Query 036168
Match_columns 846
No_of_seqs 706 out of 4435
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.2E-81 1.6E-85 718.2 45.2 693 11-732 8-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 5E-61 1.1E-65 586.8 51.1 647 118-820 134-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-41 2.6E-46 357.8 14.9 279 169-455 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 7E-22 1.5E-26 243.4 18.0 277 526-815 70-367 (968)
5 PLN00113 leucine-rich repeat r 99.9 8.6E-22 1.9E-26 242.5 14.8 305 527-846 142-462 (968)
6 KOG0444 Cytoskeletal regulator 99.8 5.6E-22 1.2E-26 207.0 -1.3 200 525-733 32-259 (1255)
7 PLN03210 Resistant to P. syrin 99.8 3.5E-19 7.5E-24 219.2 20.1 285 523-819 587-945 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 4.7E-21 1E-25 200.2 -2.6 263 542-823 118-381 (1255)
9 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.5E-23 180.5 2.9 274 526-816 126-428 (873)
10 KOG4194 Membrane glycoprotein 99.7 1.3E-18 2.8E-23 181.1 1.5 276 526-817 174-452 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 4.5E-18 9.7E-23 169.7 -7.5 245 546-815 64-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 2.7E-17 5.9E-22 164.1 -5.3 225 571-815 62-286 (565)
13 PRK04841 transcriptional regul 99.6 2.4E-13 5.2E-18 167.0 24.6 300 160-509 10-332 (903)
14 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.7E-21 140.9 -4.5 128 599-729 32-160 (264)
15 KOG0617 Ras suppressor protein 99.5 3.5E-16 7.5E-21 138.1 -4.6 141 573-716 52-193 (264)
16 KOG0618 Serine/threonine phosp 99.5 1.5E-15 3.2E-20 167.4 -2.4 66 542-611 60-125 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-14 6.8E-19 152.4 6.1 189 542-730 15-232 (319)
18 PRK00411 cdc6 cell division co 99.5 4.5E-11 9.7E-16 131.6 30.0 324 159-500 25-376 (394)
19 PRK15387 E3 ubiquitin-protein 99.4 6.5E-13 1.4E-17 151.7 13.8 235 525-815 222-456 (788)
20 KOG0618 Serine/threonine phosp 99.4 1.3E-14 2.8E-19 160.1 -1.2 244 550-817 241-489 (1081)
21 PRK15370 E3 ubiquitin-protein 99.4 4.2E-13 9.1E-18 154.4 10.5 224 550-815 199-426 (754)
22 PRK15370 E3 ubiquitin-protein 99.4 4.5E-13 9.7E-18 154.2 8.3 201 577-815 199-399 (754)
23 TIGR02928 orc1/cdc6 family rep 99.4 5.8E-10 1.2E-14 121.5 30.6 306 161-482 12-351 (365)
24 PRK15387 E3 ubiquitin-protein 99.4 3.3E-12 7.2E-17 146.0 12.5 234 550-846 222-455 (788)
25 cd00116 LRR_RI Leucine-rich re 99.3 5.4E-13 1.2E-17 142.8 5.1 240 570-817 16-291 (319)
26 KOG4237 Extracellular matrix p 99.3 1.7E-13 3.7E-18 137.3 0.4 240 566-818 80-360 (498)
27 COG2909 MalT ATP-dependent tra 99.3 1.2E-10 2.5E-15 129.2 21.2 304 161-512 16-341 (894)
28 TIGR00635 ruvB Holliday juncti 99.3 9.8E-11 2.1E-15 123.9 17.8 266 164-483 4-291 (305)
29 PRK00080 ruvB Holliday junctio 99.3 1.7E-10 3.7E-15 122.7 18.1 267 163-483 24-312 (328)
30 TIGR03015 pepcterm_ATPase puta 99.3 1.1E-09 2.4E-14 113.8 23.6 184 191-379 43-242 (269)
31 PF01637 Arch_ATPase: Archaeal 99.2 5.8E-11 1.2E-15 120.8 12.1 198 166-374 1-233 (234)
32 PTZ00112 origin recognition co 99.1 1.4E-08 2.9E-13 113.8 24.6 306 161-481 752-1086(1164)
33 PF05729 NACHT: NACHT domain 99.1 6.7E-10 1.4E-14 106.2 12.4 147 192-343 1-163 (166)
34 COG3899 Predicted ATPase [Gene 99.1 2.6E-09 5.7E-14 125.9 18.4 321 165-509 1-386 (849)
35 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.3E-16 129.0 -3.4 156 569-730 90-245 (722)
36 PF05496 RuvB_N: Holliday junc 99.0 7.1E-09 1.5E-13 98.9 13.9 186 163-381 23-227 (233)
37 KOG4237 Extracellular matrix p 99.0 6E-11 1.3E-15 119.3 -0.2 134 521-659 63-199 (498)
38 KOG3207 Beta-tubulin folding c 99.0 6.7E-11 1.5E-15 120.7 -0.3 185 544-730 115-312 (505)
39 COG2256 MGS1 ATPase related to 99.0 1.9E-08 4.1E-13 102.7 16.8 177 164-372 24-209 (436)
40 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.2E-16 127.1 -4.3 178 542-729 90-270 (722)
41 COG1474 CDC6 Cdc6-related prot 98.9 4.1E-07 8.8E-12 96.6 25.2 300 161-482 14-335 (366)
42 PRK13342 recombination factor 98.9 2.7E-08 5.9E-13 109.1 15.1 182 164-378 12-199 (413)
43 PRK06893 DNA replication initi 98.9 7.5E-08 1.6E-12 96.5 16.5 156 191-379 39-207 (229)
44 KOG3207 Beta-tubulin folding c 98.9 9.2E-10 2E-14 112.5 2.7 203 525-729 121-336 (505)
45 KOG4658 Apoptotic ATPase [Sign 98.8 2.9E-09 6.3E-14 125.0 6.3 130 575-705 543-678 (889)
46 COG2255 RuvB Holliday junction 98.8 1.5E-07 3.2E-12 91.6 16.3 270 164-484 26-314 (332)
47 COG4886 Leucine-rich repeat (L 98.8 2.9E-09 6.2E-14 117.4 4.8 153 574-730 113-266 (394)
48 PRK14961 DNA polymerase III su 98.8 2.3E-07 5E-12 99.8 19.2 199 164-375 16-220 (363)
49 KOG1909 Ran GTPase-activating 98.8 1.8E-09 3.9E-14 107.5 1.6 84 646-729 155-251 (382)
50 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.9E-14 105.5 0.6 80 647-729 283-362 (490)
51 PRK07003 DNA polymerase III su 98.8 3.7E-07 8E-12 102.3 19.7 196 164-376 16-222 (830)
52 PF13401 AAA_22: AAA domain; P 98.8 2.6E-08 5.7E-13 90.7 9.1 118 190-309 3-125 (131)
53 TIGR03420 DnaA_homol_Hda DnaA 98.8 1.5E-07 3.2E-12 95.0 15.1 172 169-379 22-205 (226)
54 PRK04195 replication factor C 98.8 3.6E-07 7.8E-12 102.4 19.5 248 164-454 14-271 (482)
55 PF14580 LRR_9: Leucine-rich r 98.7 5.5E-09 1.2E-13 97.9 3.7 102 576-681 18-123 (175)
56 PRK14949 DNA polymerase III su 98.7 2.3E-07 5.1E-12 106.0 17.2 181 164-375 16-220 (944)
57 PRK12402 replication factor C 98.7 2.8E-07 6.2E-12 99.3 17.3 200 164-375 15-226 (337)
58 COG4886 Leucine-rich repeat (L 98.7 8E-09 1.7E-13 113.9 5.2 146 581-730 97-243 (394)
59 PRK14960 DNA polymerase III su 98.7 3.2E-07 7E-12 101.7 17.5 195 164-375 15-219 (702)
60 PRK14963 DNA polymerase III su 98.7 4.9E-08 1.1E-12 108.2 11.3 196 164-373 14-215 (504)
61 PF13191 AAA_16: AAA ATPase do 98.7 3.9E-08 8.4E-13 95.8 9.1 51 165-218 1-51 (185)
62 PTZ00202 tuzin; Provisional 98.7 6.5E-07 1.4E-11 93.3 18.1 172 158-343 256-434 (550)
63 KOG4341 F-box protein containi 98.7 1.2E-09 2.7E-14 111.0 -1.8 280 544-841 158-457 (483)
64 PF14580 LRR_9: Leucine-rich r 98.7 6.3E-09 1.4E-13 97.5 1.8 139 585-729 5-150 (175)
65 PRK14956 DNA polymerase III su 98.7 3.2E-07 7E-12 98.9 14.8 198 164-374 18-221 (484)
66 PRK14957 DNA polymerase III su 98.7 7.6E-07 1.7E-11 98.9 18.1 184 164-375 16-221 (546)
67 PRK05564 DNA polymerase III su 98.7 6.9E-07 1.5E-11 94.4 17.1 181 164-375 4-190 (313)
68 PRK12323 DNA polymerase III su 98.6 6.7E-07 1.5E-11 99.0 16.6 197 164-375 16-225 (700)
69 PRK06645 DNA polymerase III su 98.6 1.3E-06 2.8E-11 96.5 19.0 196 164-373 21-227 (507)
70 PRK00440 rfc replication facto 98.6 1.3E-06 2.8E-11 93.3 18.5 184 164-375 17-203 (319)
71 TIGR02903 spore_lon_C ATP-depe 98.6 7E-06 1.5E-10 94.0 24.1 203 164-378 154-398 (615)
72 cd00009 AAA The AAA+ (ATPases 98.6 4.9E-07 1.1E-11 84.3 12.5 125 167-311 1-131 (151)
73 PLN03025 replication factor C 98.6 2.2E-06 4.8E-11 90.8 18.7 186 164-375 13-200 (319)
74 KOG2028 ATPase related to the 98.6 5.7E-07 1.2E-11 90.0 13.0 179 165-371 139-332 (554)
75 PRK13341 recombination factor 98.6 8.9E-07 1.9E-11 102.1 16.6 176 164-374 28-216 (725)
76 KOG1259 Nischarin, modulator o 98.6 7.4E-09 1.6E-13 100.5 -0.4 128 575-707 282-411 (490)
77 PRK14964 DNA polymerase III su 98.6 1.9E-06 4E-11 94.4 18.1 183 164-373 13-215 (491)
78 PRK07994 DNA polymerase III su 98.6 1.1E-06 2.4E-11 99.2 16.6 196 164-376 16-221 (647)
79 KOG4341 F-box protein containi 98.6 4.7E-09 1E-13 106.9 -2.3 262 551-822 139-419 (483)
80 KOG2120 SCF ubiquitin ligase, 98.6 2.8E-09 6E-14 103.5 -3.8 60 579-638 187-248 (419)
81 PRK14951 DNA polymerase III su 98.6 1.5E-06 3.3E-11 97.8 17.2 198 164-375 16-225 (618)
82 KOG1909 Ran GTPase-activating 98.6 2.7E-08 5.8E-13 99.3 2.8 205 525-730 30-281 (382)
83 TIGR02397 dnaX_nterm DNA polym 98.6 3.7E-06 8E-11 91.3 19.8 186 163-376 13-219 (355)
84 PRK14958 DNA polymerase III su 98.6 1.4E-06 3.1E-11 96.9 16.6 181 164-375 16-220 (509)
85 PRK14962 DNA polymerase III su 98.6 2.3E-06 5E-11 94.2 17.8 183 164-378 14-222 (472)
86 PRK05896 DNA polymerase III su 98.6 2.1E-06 4.5E-11 95.5 17.3 192 164-372 16-217 (605)
87 PRK08691 DNA polymerase III su 98.6 1.3E-06 2.7E-11 98.1 15.7 199 164-375 16-220 (709)
88 PRK07471 DNA polymerase III su 98.6 3.9E-06 8.4E-11 89.4 18.8 198 163-376 18-239 (365)
89 COG3903 Predicted ATPase [Gene 98.5 1.7E-07 3.7E-12 96.6 8.0 293 189-509 12-314 (414)
90 PRK09112 DNA polymerase III su 98.5 1.9E-06 4.1E-11 91.2 15.9 199 162-376 21-241 (351)
91 PRK08084 DNA replication initi 98.5 4.1E-06 8.8E-11 84.3 17.1 156 191-379 45-213 (235)
92 PRK08727 hypothetical protein; 98.5 3.6E-06 7.7E-11 84.6 16.6 151 192-375 42-204 (233)
93 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-08 2.6E-13 99.2 -1.5 163 566-730 199-374 (419)
94 PRK07940 DNA polymerase III su 98.5 3.8E-06 8.2E-11 90.3 17.3 182 164-375 5-213 (394)
95 PF13173 AAA_14: AAA domain 98.5 6.3E-07 1.4E-11 80.9 9.7 121 192-334 3-126 (128)
96 PRK14969 DNA polymerase III su 98.5 2.3E-06 5E-11 96.0 15.9 178 164-372 16-217 (527)
97 TIGR00678 holB DNA polymerase 98.5 4.8E-06 1E-10 81.0 16.2 92 269-371 95-187 (188)
98 PRK08903 DnaA regulatory inact 98.5 5.2E-06 1.1E-10 83.5 16.4 155 191-379 42-203 (227)
99 PLN03150 hypothetical protein; 98.4 3.2E-07 6.9E-12 105.9 7.7 109 602-710 420-530 (623)
100 PRK14955 DNA polymerase III su 98.4 5.1E-06 1.1E-10 90.6 16.3 200 164-374 16-227 (397)
101 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 104.6 7.9 107 625-731 419-527 (623)
102 PRK09111 DNA polymerase III su 98.4 9.5E-06 2.1E-10 91.8 17.7 200 163-376 23-234 (598)
103 PRK14952 DNA polymerase III su 98.4 1.2E-05 2.7E-10 90.3 18.4 197 164-377 13-222 (584)
104 PRK14959 DNA polymerase III su 98.4 1.2E-05 2.5E-10 90.1 17.5 198 164-379 16-225 (624)
105 KOG2227 Pre-initiation complex 98.4 6.6E-06 1.4E-10 85.9 14.2 217 161-379 147-376 (529)
106 PRK14950 DNA polymerase III su 98.4 1.6E-05 3.5E-10 91.0 19.0 197 164-377 16-223 (585)
107 PRK07133 DNA polymerase III su 98.4 1.7E-05 3.7E-10 90.2 18.6 195 164-374 18-218 (725)
108 PRK14970 DNA polymerase III su 98.4 1.5E-05 3.3E-10 86.5 17.8 184 164-374 17-208 (367)
109 PRK07764 DNA polymerase III su 98.3 1.6E-05 3.5E-10 93.0 18.4 193 164-373 15-219 (824)
110 PRK08451 DNA polymerase III su 98.3 2E-05 4.4E-10 87.2 18.1 182 164-376 14-219 (535)
111 PF00308 Bac_DnaA: Bacterial d 98.3 1.5E-05 3.3E-10 78.9 15.5 189 166-379 11-212 (219)
112 TIGR01242 26Sp45 26S proteasom 98.3 5.4E-06 1.2E-10 89.7 13.4 183 162-369 120-328 (364)
113 PRK09087 hypothetical protein; 98.3 6.8E-06 1.5E-10 81.7 13.0 146 191-379 44-199 (226)
114 PRK14953 DNA polymerase III su 98.3 2.7E-05 5.8E-10 86.4 19.0 181 164-376 16-221 (486)
115 PRK14087 dnaA chromosomal repl 98.3 2.6E-05 5.5E-10 86.0 18.2 171 191-379 141-323 (450)
116 cd01128 rho_factor Transcripti 98.3 9.3E-07 2E-11 88.6 6.3 90 191-281 16-114 (249)
117 PRK14954 DNA polymerase III su 98.3 3E-05 6.4E-10 87.9 18.9 199 164-372 16-225 (620)
118 PRK05642 DNA replication initi 98.3 2.6E-05 5.7E-10 78.3 16.5 156 191-379 45-212 (234)
119 CHL00181 cbbX CbbX; Provisiona 98.3 7.3E-05 1.6E-09 77.3 19.3 140 192-347 60-213 (287)
120 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 67.2 4.3 59 577-635 1-60 (61)
121 PRK14971 DNA polymerase III su 98.2 4.7E-05 1E-09 86.9 18.7 179 164-374 17-221 (614)
122 PRK14948 DNA polymerase III su 98.2 5.4E-05 1.2E-09 86.4 19.1 198 164-376 16-223 (620)
123 PRK09376 rho transcription ter 98.2 2.8E-06 6.2E-11 88.5 8.0 101 175-281 158-267 (416)
124 PRK03992 proteasome-activating 98.2 1E-05 2.2E-10 87.8 12.4 182 162-368 129-336 (389)
125 PRK06305 DNA polymerase III su 98.2 6.8E-05 1.5E-09 82.7 18.8 177 164-372 17-219 (451)
126 PRK15386 type III secretion pr 98.2 6.9E-06 1.5E-10 86.7 9.5 138 573-729 48-187 (426)
127 PRK06647 DNA polymerase III su 98.2 7.2E-05 1.6E-09 84.4 18.1 195 164-375 16-220 (563)
128 TIGR02880 cbbX_cfxQ probable R 98.2 0.0001 2.2E-09 76.3 17.9 137 193-345 60-210 (284)
129 PHA02544 44 clamp loader, smal 98.2 3.7E-05 8E-10 81.8 15.0 150 163-341 20-171 (316)
130 KOG2543 Origin recognition com 98.2 7.4E-05 1.6E-09 76.2 15.9 169 162-342 4-192 (438)
131 KOG2982 Uncharacterized conser 98.2 5.5E-07 1.2E-11 87.8 0.9 82 718-810 198-285 (418)
132 PF13855 LRR_8: Leucine rich r 98.1 2.6E-06 5.6E-11 65.3 4.3 59 600-659 1-60 (61)
133 PRK14965 DNA polymerase III su 98.1 6.5E-05 1.4E-09 85.6 17.5 194 164-375 16-221 (576)
134 PF05673 DUF815: Protein of un 98.1 0.00012 2.6E-09 71.4 16.6 125 161-312 24-153 (249)
135 TIGR02881 spore_V_K stage V sp 98.1 6.2E-05 1.3E-09 77.3 15.7 164 165-345 7-193 (261)
136 KOG0989 Replication factor C, 98.1 2.9E-05 6.2E-10 76.9 12.3 192 163-376 35-231 (346)
137 PF05621 TniB: Bacterial TniB 98.1 0.00014 3.1E-09 73.4 17.5 200 171-373 44-259 (302)
138 PRK05563 DNA polymerase III su 98.1 0.00014 3E-09 82.5 18.8 193 164-373 16-218 (559)
139 COG3267 ExeA Type II secretory 98.1 0.00024 5.2E-09 69.0 17.3 180 191-378 51-248 (269)
140 PRK11331 5-methylcytosine-spec 98.1 2E-05 4.4E-10 84.2 11.0 120 164-295 175-298 (459)
141 PRK07399 DNA polymerase III su 98.1 0.00021 4.5E-09 74.8 17.7 197 164-375 4-221 (314)
142 PRK06620 hypothetical protein; 98.0 0.0001 2.2E-09 72.7 13.6 140 192-378 45-192 (214)
143 TIGR00362 DnaA chromosomal rep 98.0 0.00024 5.1E-09 78.2 17.9 166 191-375 136-310 (405)
144 TIGR00767 rho transcription te 98.0 2.2E-05 4.7E-10 82.6 9.0 89 192-281 169-266 (415)
145 KOG0531 Protein phosphatase 1, 98.0 1.5E-06 3.3E-11 95.9 0.4 108 572-683 90-198 (414)
146 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.6E-11 96.7 -0.6 127 575-706 70-197 (414)
147 PF14516 AAA_35: AAA-like doma 98.0 0.002 4.4E-08 68.4 23.7 205 161-381 8-245 (331)
148 PRK05707 DNA polymerase III su 98.0 0.00022 4.7E-09 75.1 15.9 171 189-375 20-203 (328)
149 TIGR02639 ClpA ATP-dependent C 98.0 6.1E-05 1.3E-09 88.9 13.1 159 164-343 182-358 (731)
150 TIGR03345 VI_ClpV1 type VI sec 97.9 6.9E-05 1.5E-09 89.1 13.2 184 164-368 187-389 (852)
151 KOG1859 Leucine-rich repeat pr 97.9 4.4E-07 9.5E-12 98.8 -4.9 175 525-707 109-291 (1096)
152 PRK00149 dnaA chromosomal repl 97.9 0.00037 8.1E-09 77.7 18.1 164 191-375 148-322 (450)
153 PRK15386 type III secretion pr 97.9 2.5E-05 5.5E-10 82.5 7.7 161 620-817 48-213 (426)
154 PRK14088 dnaA chromosomal repl 97.9 0.00034 7.4E-09 77.1 16.4 167 191-376 130-306 (440)
155 PTZ00361 26 proteosome regulat 97.9 6.2E-05 1.4E-09 81.7 10.3 162 164-345 183-369 (438)
156 PF00004 AAA: ATPase family as 97.9 4.5E-05 9.8E-10 69.4 7.6 97 194-310 1-112 (132)
157 PRK10536 hypothetical protein; 97.9 0.00028 6E-09 69.9 13.4 132 164-310 55-213 (262)
158 PRK12422 chromosomal replicati 97.8 0.00043 9.4E-09 76.1 16.4 158 191-369 141-307 (445)
159 CHL00095 clpC Clp protease ATP 97.8 0.00024 5.2E-09 85.0 15.3 159 164-342 179-353 (821)
160 PRK14086 dnaA chromosomal repl 97.8 0.00023 4.9E-09 79.6 13.7 162 192-375 315-488 (617)
161 TIGR03689 pup_AAA proteasome A 97.8 0.00023 4.9E-09 78.6 13.4 169 164-343 182-378 (512)
162 KOG1859 Leucine-rich repeat pr 97.8 8.3E-07 1.8E-11 96.7 -5.8 153 572-731 104-291 (1096)
163 COG0542 clpA ATP-binding subun 97.8 0.00079 1.7E-08 76.9 17.1 124 163-297 490-620 (786)
164 PTZ00454 26S protease regulato 97.8 0.00033 7.1E-09 75.7 13.6 183 163-369 144-351 (398)
165 TIGR00602 rad24 checkpoint pro 97.7 0.00027 5.9E-09 80.2 13.1 52 162-214 82-133 (637)
166 TIGR00763 lon ATP-dependent pr 97.7 0.00056 1.2E-08 81.4 16.4 167 163-343 319-505 (775)
167 PRK11034 clpA ATP-dependent Cl 97.7 0.0008 1.7E-08 78.5 17.1 159 164-343 186-362 (758)
168 CHL00176 ftsH cell division pr 97.7 0.00073 1.6E-08 77.4 16.2 179 164-367 183-386 (638)
169 smart00382 AAA ATPases associa 97.7 0.00023 4.9E-09 65.6 10.1 88 192-283 3-91 (148)
170 PRK08116 hypothetical protein; 97.7 0.00025 5.4E-09 72.6 10.8 104 192-310 115-221 (268)
171 PRK08769 DNA polymerase III su 97.7 0.0019 4E-08 67.4 16.8 176 172-376 12-209 (319)
172 PRK08058 DNA polymerase III su 97.7 0.0011 2.4E-08 70.3 15.5 163 165-341 6-180 (329)
173 COG0466 Lon ATP-dependent Lon 97.6 0.00042 9.1E-09 76.8 12.1 167 162-343 321-508 (782)
174 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00069 1.5E-08 81.4 14.7 160 164-343 173-349 (852)
175 PRK06871 DNA polymerase III su 97.6 0.0031 6.8E-08 65.9 17.6 178 173-372 11-200 (325)
176 PRK10865 protein disaggregatio 97.6 0.00083 1.8E-08 80.3 14.8 159 164-343 178-354 (857)
177 COG1222 RPT1 ATP-dependent 26S 97.6 0.0023 5E-08 65.2 15.4 181 164-369 151-357 (406)
178 PF12799 LRR_4: Leucine Rich r 97.6 8.6E-05 1.9E-09 51.9 3.9 35 577-611 1-35 (44)
179 COG5238 RNA1 Ran GTPase-activa 97.6 7E-05 1.5E-09 72.5 4.3 42 569-610 84-130 (388)
180 KOG1514 Origin recognition com 97.6 0.0023 5.1E-08 70.8 16.4 213 162-379 394-625 (767)
181 PRK10787 DNA-binding ATP-depen 97.6 0.00045 9.8E-09 81.2 11.8 168 162-343 320-506 (784)
182 TIGR02640 gas_vesic_GvpN gas v 97.6 0.002 4.4E-08 66.0 15.3 109 192-310 22-161 (262)
183 KOG3665 ZYG-1-like serine/thre 97.5 4.6E-05 1E-09 87.8 3.4 129 600-729 122-260 (699)
184 KOG4579 Leucine-rich repeat (L 97.5 7.5E-06 1.6E-10 70.8 -2.4 101 579-681 29-133 (177)
185 PRK10865 protein disaggregatio 97.5 0.0015 3.3E-08 78.2 15.9 139 163-309 567-720 (857)
186 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0015 3.2E-08 78.6 15.5 137 163-309 564-717 (852)
187 PRK08181 transposase; Validate 97.5 0.00064 1.4E-08 69.1 10.2 101 192-310 107-209 (269)
188 COG0593 DnaA ATPase involved i 97.5 0.0037 8.1E-08 66.5 16.0 140 190-349 112-263 (408)
189 PRK06090 DNA polymerase III su 97.5 0.0076 1.6E-07 62.8 18.1 166 173-375 12-201 (319)
190 PF13177 DNA_pol3_delta2: DNA 97.5 0.0018 4E-08 60.8 12.4 137 168-330 1-161 (162)
191 KOG2982 Uncharacterized conser 97.5 5.6E-05 1.2E-09 74.2 2.0 210 621-844 68-287 (418)
192 COG2812 DnaX DNA polymerase II 97.5 0.00044 9.6E-09 75.7 9.1 188 164-370 16-215 (515)
193 TIGR02639 ClpA ATP-dependent C 97.4 0.0025 5.5E-08 75.4 16.2 123 163-296 453-579 (731)
194 KOG1947 Leucine rich repeat pr 97.4 3.7E-05 8E-10 87.6 0.8 63 758-822 380-445 (482)
195 TIGR02902 spore_lonB ATP-depen 97.4 0.0008 1.7E-08 76.1 11.0 171 164-345 65-278 (531)
196 KOG1947 Leucine rich repeat pr 97.4 3.6E-05 7.9E-10 87.6 0.3 39 784-822 380-419 (482)
197 TIGR01241 FtsH_fam ATP-depende 97.4 0.0025 5.4E-08 72.0 14.8 181 163-368 54-259 (495)
198 PRK07993 DNA polymerase III su 97.4 0.0011 2.4E-08 70.0 11.1 180 173-374 11-203 (334)
199 PRK12377 putative replication 97.4 0.0004 8.6E-09 69.7 7.3 102 191-309 101-205 (248)
200 PF12799 LRR_4: Leucine Rich r 97.4 0.00024 5.2E-09 49.7 3.8 34 601-635 2-35 (44)
201 PF02562 PhoH: PhoH-like prote 97.3 0.00085 1.8E-08 64.7 8.4 132 168-311 4-157 (205)
202 PF10443 RNA12: RNA12 protein; 97.3 0.031 6.6E-07 59.5 20.4 205 169-386 1-289 (431)
203 COG2607 Predicted ATPase (AAA+ 97.3 0.0021 4.6E-08 61.7 10.6 122 162-310 58-183 (287)
204 COG5238 RNA1 Ran GTPase-activa 97.3 0.00049 1.1E-08 66.9 6.3 245 546-793 26-316 (388)
205 TIGR01243 CDC48 AAA family ATP 97.3 0.0037 8E-08 74.3 15.2 182 164-369 453-657 (733)
206 PRK04296 thymidine kinase; Pro 97.3 0.00081 1.7E-08 65.2 8.0 113 192-311 3-117 (190)
207 COG0470 HolB ATPase involved i 97.3 0.0022 4.7E-08 68.7 12.1 145 165-331 2-169 (325)
208 PRK08118 topology modulation p 97.3 0.00046 9.9E-09 65.2 6.0 34 193-226 3-37 (167)
209 PRK06526 transposase; Provisio 97.3 0.00057 1.2E-08 69.1 7.0 100 192-310 99-201 (254)
210 PLN00020 ribulose bisphosphate 97.3 0.0043 9.3E-08 64.4 13.3 26 189-214 146-171 (413)
211 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0013 2.8E-08 78.5 11.1 137 163-309 565-718 (852)
212 KOG3665 ZYG-1-like serine/thre 97.3 0.00018 3.8E-09 83.1 3.8 132 526-661 123-263 (699)
213 PRK07952 DNA replication prote 97.3 0.0019 4.1E-08 64.7 10.3 103 191-309 99-204 (244)
214 PRK08939 primosomal protein Dn 97.2 0.002 4.3E-08 67.2 10.8 122 168-309 135-260 (306)
215 COG1373 Predicted ATPase (AAA+ 97.2 0.0061 1.3E-07 66.3 14.9 150 193-374 39-191 (398)
216 PRK06921 hypothetical protein; 97.2 0.0019 4.1E-08 66.0 10.3 101 191-310 117-225 (266)
217 PRK13531 regulatory ATPase Rav 97.2 0.0012 2.6E-08 71.6 8.9 154 164-342 20-193 (498)
218 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0089 1.9E-07 65.1 15.1 166 163-348 189-379 (802)
219 PF04665 Pox_A32: Poxvirus A32 97.2 0.0013 2.8E-08 64.9 8.4 37 191-229 13-49 (241)
220 KOG2004 Mitochondrial ATP-depe 97.2 0.0031 6.7E-08 69.8 11.9 108 162-281 409-516 (906)
221 PRK04132 replication factor C 97.2 0.0092 2E-07 70.0 16.6 158 199-377 574-733 (846)
222 KOG1969 DNA replication checkp 97.2 0.0015 3.2E-08 72.5 9.3 89 189-295 324-412 (877)
223 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00034 7.5E-09 72.9 4.4 51 165-215 52-102 (361)
224 PRK09183 transposase/IS protei 97.2 0.0012 2.5E-08 67.4 8.1 101 192-310 103-206 (259)
225 PF00158 Sigma54_activat: Sigm 97.2 0.0013 2.7E-08 62.1 7.5 133 166-310 1-144 (168)
226 KOG2035 Replication factor C, 97.1 0.0025 5.4E-08 62.4 9.4 187 166-375 15-228 (351)
227 CHL00095 clpC Clp protease ATP 97.1 0.0026 5.7E-08 76.3 11.9 140 163-310 508-662 (821)
228 PF00910 RNA_helicase: RNA hel 97.1 0.0016 3.4E-08 56.4 7.4 21 194-214 1-21 (107)
229 TIGR01243 CDC48 AAA family ATP 97.1 0.0041 8.8E-08 74.0 13.4 183 164-370 178-382 (733)
230 KOG4579 Leucine-rich repeat (L 97.1 8.1E-05 1.8E-09 64.6 -0.6 92 572-665 48-140 (177)
231 PF14532 Sigma54_activ_2: Sigm 97.1 0.00084 1.8E-08 61.4 6.0 108 167-310 1-110 (138)
232 KOG1644 U2-associated snRNP A' 97.1 0.00065 1.4E-08 63.3 5.0 14 715-728 136-149 (233)
233 PF07728 AAA_5: AAA domain (dy 97.1 0.00025 5.3E-09 65.2 2.4 90 194-296 2-91 (139)
234 COG1223 Predicted ATPase (AAA+ 97.1 0.013 2.8E-07 56.9 13.8 180 164-368 121-318 (368)
235 PF07693 KAP_NTPase: KAP famil 97.1 0.025 5.3E-07 60.5 18.1 43 170-215 2-44 (325)
236 PRK06964 DNA polymerase III su 97.1 0.0047 1E-07 65.0 11.8 94 269-375 131-225 (342)
237 PRK08699 DNA polymerase III su 97.1 0.0077 1.7E-07 63.4 13.3 72 269-342 112-184 (325)
238 KOG0991 Replication factor C, 97.1 0.0055 1.2E-07 58.3 10.6 104 163-294 26-137 (333)
239 PF01695 IstB_IS21: IstB-like 97.1 0.00087 1.9E-08 63.9 5.5 101 191-310 47-150 (178)
240 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0074 1.6E-07 67.0 13.3 183 164-369 228-429 (489)
241 KOG0744 AAA+-type ATPase [Post 97.0 0.0068 1.5E-07 60.8 11.2 80 191-280 177-260 (423)
242 PRK12608 transcription termina 97.0 0.0044 9.5E-08 65.1 10.2 102 172-279 119-229 (380)
243 PRK11889 flhF flagellar biosyn 97.0 0.011 2.5E-07 62.2 13.1 107 189-297 239-349 (436)
244 KOG0730 AAA+-type ATPase [Post 97.0 0.018 3.9E-07 63.7 15.0 174 163-356 433-628 (693)
245 PRK07261 topology modulation p 97.0 0.0017 3.8E-08 61.6 6.6 64 193-279 2-66 (171)
246 PRK11034 clpA ATP-dependent Cl 97.0 0.0039 8.4E-08 72.9 10.6 122 164-296 458-583 (758)
247 TIGR01650 PD_CobS cobaltochela 96.9 0.022 4.7E-07 59.1 14.6 163 163-343 44-233 (327)
248 COG2884 FtsE Predicted ATPase 96.9 0.01 2.3E-07 55.0 10.3 60 258-317 143-204 (223)
249 PRK06835 DNA replication prote 96.9 0.004 8.6E-08 65.4 8.8 103 192-310 184-289 (329)
250 KOG0734 AAA+-type ATPase conta 96.9 0.015 3.3E-07 62.3 12.8 50 164-214 304-360 (752)
251 KOG0741 AAA+-type ATPase [Post 96.8 0.014 3.1E-07 62.4 12.6 153 189-365 536-704 (744)
252 PHA00729 NTP-binding motif con 96.8 0.0049 1.1E-07 60.2 8.5 25 190-214 16-40 (226)
253 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.016 3.4E-07 53.5 11.3 117 192-311 3-139 (159)
254 PRK05541 adenylylsulfate kinas 96.8 0.0047 1E-07 59.2 8.3 37 189-227 5-41 (176)
255 PHA02244 ATPase-like protein 96.8 0.01 2.3E-07 62.1 11.0 99 193-309 121-230 (383)
256 cd01120 RecA-like_NTPases RecA 96.8 0.011 2.3E-07 55.9 10.5 40 193-234 1-40 (165)
257 KOG0733 Nuclear AAA ATPase (VC 96.8 0.028 6.2E-07 61.4 14.1 135 191-345 545-694 (802)
258 TIGR02237 recomb_radB DNA repa 96.7 0.0048 1E-07 61.1 8.0 48 189-239 10-57 (209)
259 PRK09361 radB DNA repair and r 96.7 0.0065 1.4E-07 60.9 9.0 46 189-237 21-66 (225)
260 PTZ00494 tuzin-like protein; P 96.7 0.2 4.3E-06 53.2 19.4 173 159-343 366-544 (664)
261 PF03215 Rad17: Rad17 cell cyc 96.7 0.013 2.8E-07 65.5 11.7 59 165-228 20-78 (519)
262 PRK11608 pspF phage shock prot 96.6 0.007 1.5E-07 64.2 8.9 134 164-309 6-150 (326)
263 COG1484 DnaC DNA replication p 96.6 0.0083 1.8E-07 60.8 9.1 81 191-288 105-185 (254)
264 TIGR01817 nifA Nif-specific re 96.6 0.019 4.1E-07 65.7 13.1 134 162-309 194-340 (534)
265 PF13207 AAA_17: AAA domain; P 96.6 0.0013 2.8E-08 58.6 2.8 22 193-214 1-22 (121)
266 KOG1051 Chaperone HSP104 and r 96.6 0.014 3E-07 68.0 11.6 123 164-297 562-687 (898)
267 COG1875 NYN ribonuclease and A 96.6 0.0073 1.6E-07 61.8 8.1 133 167-310 227-388 (436)
268 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.023 5E-07 56.4 11.4 124 192-315 31-204 (254)
269 cd01393 recA_like RecA is a b 96.6 0.012 2.6E-07 59.1 9.9 89 189-280 17-124 (226)
270 KOG0731 AAA+-type ATPase conta 96.6 0.058 1.2E-06 61.7 15.7 184 164-371 311-520 (774)
271 KOG2228 Origin recognition com 96.5 0.033 7.2E-07 56.5 12.2 175 164-343 24-219 (408)
272 cd01394 radB RadB. The archaea 96.5 0.01 2.3E-07 59.1 9.0 43 189-233 17-59 (218)
273 PRK15455 PrkA family serine pr 96.5 0.0016 3.5E-08 71.5 3.3 50 165-214 77-126 (644)
274 COG0542 clpA ATP-binding subun 96.5 0.0062 1.4E-07 69.8 8.0 159 164-343 170-346 (786)
275 cd03214 ABC_Iron-Siderophores_ 96.5 0.03 6.6E-07 53.8 11.8 121 192-315 26-163 (180)
276 PRK06696 uridine kinase; Valid 96.5 0.0029 6.4E-08 63.2 4.9 44 168-214 2-45 (223)
277 PRK10733 hflB ATP-dependent me 96.5 0.025 5.4E-07 65.8 13.1 162 164-345 152-337 (644)
278 PRK06067 flagellar accessory p 96.5 0.021 4.5E-07 57.6 11.1 87 189-280 23-130 (234)
279 cd03247 ABCC_cytochrome_bd The 96.5 0.013 2.8E-07 56.2 9.2 117 192-314 29-161 (178)
280 PRK15429 formate hydrogenlyase 96.5 0.012 2.6E-07 69.5 10.7 135 164-310 376-521 (686)
281 KOG0728 26S proteasome regulat 96.5 0.092 2E-06 50.7 14.3 160 165-345 147-333 (404)
282 TIGR02974 phageshock_pspF psp 96.5 0.014 3E-07 61.9 10.0 131 166-309 1-143 (329)
283 PF00448 SRP54: SRP54-type pro 96.5 0.011 2.4E-07 57.3 8.4 55 191-247 1-56 (196)
284 PF13604 AAA_30: AAA domain; P 96.5 0.0062 1.4E-07 59.3 6.8 105 191-310 18-131 (196)
285 cd03223 ABCD_peroxisomal_ALDP 96.5 0.036 7.7E-07 52.5 11.7 117 192-314 28-152 (166)
286 TIGR03499 FlhF flagellar biosy 96.5 0.012 2.6E-07 61.0 9.0 39 190-229 193-232 (282)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.03 6.6E-07 51.5 10.8 104 192-315 27-132 (144)
288 cd00544 CobU Adenosylcobinamid 96.4 0.0088 1.9E-07 56.4 7.1 79 194-279 2-82 (169)
289 cd01131 PilT Pilus retraction 96.4 0.012 2.6E-07 57.5 8.3 111 192-314 2-113 (198)
290 cd00983 recA RecA is a bacter 96.4 0.0065 1.4E-07 63.2 6.7 84 189-279 53-142 (325)
291 PRK05703 flhF flagellar biosyn 96.4 0.04 8.7E-07 60.4 13.1 103 191-295 221-326 (424)
292 KOG2739 Leucine-rich acidic nu 96.4 0.0007 1.5E-08 66.0 -0.4 83 623-705 64-153 (260)
293 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.011 2.3E-07 59.9 8.1 50 189-238 17-70 (235)
294 KOG0652 26S proteasome regulat 96.4 0.051 1.1E-06 52.7 11.8 50 164-213 171-227 (424)
295 PRK14974 cell division protein 96.4 0.051 1.1E-06 57.2 13.1 112 190-305 139-259 (336)
296 cd03216 ABC_Carb_Monos_I This 96.4 0.016 3.4E-07 54.7 8.6 116 192-315 27-147 (163)
297 KOG2739 Leucine-rich acidic nu 96.4 0.0013 2.7E-08 64.3 1.1 106 573-680 39-152 (260)
298 PRK12724 flagellar biosynthesi 96.3 0.021 4.6E-07 61.1 10.1 24 191-214 223-246 (432)
299 TIGR02012 tigrfam_recA protein 96.3 0.012 2.6E-07 61.2 8.1 85 189-280 53-143 (321)
300 PRK00771 signal recognition pa 96.3 0.044 9.6E-07 59.9 12.8 87 190-279 94-184 (437)
301 PRK05022 anaerobic nitric oxid 96.3 0.023 5E-07 64.4 11.1 136 163-310 186-332 (509)
302 KOG1644 U2-associated snRNP A' 96.3 0.0054 1.2E-07 57.4 4.8 58 647-704 87-149 (233)
303 PF08423 Rad51: Rad51; InterP 96.3 0.012 2.6E-07 59.8 7.9 55 191-246 38-96 (256)
304 PF13671 AAA_33: AAA domain; P 96.3 0.012 2.6E-07 54.1 7.3 21 193-213 1-21 (143)
305 PRK08233 hypothetical protein; 96.3 0.011 2.4E-07 57.0 7.2 24 191-214 3-26 (182)
306 cd03230 ABC_DR_subfamily_A Thi 96.3 0.021 4.7E-07 54.4 9.0 119 192-316 27-161 (173)
307 COG0464 SpoVK ATPases of the A 96.3 0.051 1.1E-06 61.7 13.6 160 164-344 242-424 (494)
308 TIGR00708 cobA cob(I)alamin ad 96.3 0.021 4.6E-07 53.4 8.4 117 191-310 5-140 (173)
309 PRK09354 recA recombinase A; P 96.2 0.016 3.5E-07 60.8 8.4 85 189-280 58-148 (349)
310 COG1618 Predicted nucleotide k 96.2 0.0043 9.4E-08 55.8 3.5 25 191-215 5-29 (179)
311 cd01122 GP4d_helicase GP4d_hel 96.2 0.063 1.4E-06 55.6 12.9 54 191-247 30-83 (271)
312 PRK14722 flhF flagellar biosyn 96.2 0.045 9.7E-07 58.3 11.7 89 191-281 137-226 (374)
313 COG4608 AppF ABC-type oligopep 96.2 0.029 6.2E-07 55.8 9.4 125 191-318 39-178 (268)
314 PRK07132 DNA polymerase III su 96.2 0.24 5.2E-06 51.4 16.6 153 191-374 18-184 (299)
315 TIGR02238 recomb_DMC1 meiotic 96.2 0.019 4.1E-07 60.0 8.5 57 189-246 94-154 (313)
316 cd03228 ABCC_MRP_Like The MRP 96.2 0.033 7.1E-07 53.0 9.6 119 192-315 29-160 (171)
317 cd01133 F1-ATPase_beta F1 ATP 96.1 0.034 7.3E-07 56.3 9.8 86 192-279 70-172 (274)
318 cd03222 ABC_RNaseL_inhibitor T 96.1 0.041 8.8E-07 52.4 9.8 103 192-316 26-138 (177)
319 PRK05439 pantothenate kinase; 96.1 0.033 7.2E-07 57.7 9.9 82 189-271 84-166 (311)
320 PRK13695 putative NTPase; Prov 96.1 0.012 2.6E-07 56.2 6.4 22 193-214 2-23 (174)
321 COG0572 Udk Uridine kinase [Nu 96.1 0.012 2.5E-07 56.9 6.0 26 189-214 6-31 (218)
322 PF07724 AAA_2: AAA domain (Cd 96.1 0.0058 1.3E-07 57.8 4.0 89 191-296 3-105 (171)
323 COG1136 SalX ABC-type antimicr 96.1 0.086 1.9E-06 51.6 12.0 58 260-317 150-210 (226)
324 cd03238 ABC_UvrA The excision 96.1 0.034 7.4E-07 52.8 9.0 113 192-314 22-153 (176)
325 PRK12723 flagellar biosynthesi 96.0 0.045 9.8E-07 58.8 10.8 106 190-297 173-283 (388)
326 TIGR00554 panK_bact pantothena 96.0 0.029 6.3E-07 57.7 9.0 25 189-213 60-84 (290)
327 PLN03187 meiotic recombination 96.0 0.04 8.7E-07 58.1 10.1 57 189-246 124-184 (344)
328 cd03246 ABCC_Protease_Secretio 96.0 0.033 7.2E-07 53.1 8.8 118 192-314 29-160 (173)
329 cd03115 SRP The signal recogni 96.0 0.057 1.2E-06 51.5 10.5 22 193-214 2-23 (173)
330 KOG0735 AAA+-type ATPase [Post 96.0 0.026 5.6E-07 62.7 8.8 73 190-280 430-504 (952)
331 KOG0729 26S proteasome regulat 96.0 0.021 4.4E-07 55.6 7.1 50 164-213 177-233 (435)
332 cd03229 ABC_Class3 This class 96.0 0.032 6.9E-07 53.5 8.5 120 192-315 27-166 (178)
333 PF08298 AAA_PrkA: PrkA AAA do 96.0 0.0085 1.8E-07 62.0 4.7 52 163-214 60-111 (358)
334 PRK09270 nucleoside triphospha 96.0 0.033 7.2E-07 55.9 9.0 26 189-214 31-56 (229)
335 COG0714 MoxR-like ATPases [Gen 95.9 0.026 5.5E-07 60.2 8.5 109 164-295 24-137 (329)
336 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.023 5E-07 55.5 7.4 122 191-319 29-160 (204)
337 cd02025 PanK Pantothenate kina 95.9 0.028 6.1E-07 55.8 8.1 22 193-214 1-22 (220)
338 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.021 4.5E-07 56.4 7.2 23 191-213 29-51 (213)
339 KOG0735 AAA+-type ATPase [Post 95.9 0.16 3.5E-06 56.8 14.3 182 164-369 667-870 (952)
340 PRK08533 flagellar accessory p 95.9 0.061 1.3E-06 53.8 10.5 48 191-242 24-71 (230)
341 COG1120 FepC ABC-type cobalami 95.9 0.087 1.9E-06 52.7 11.3 128 191-318 28-207 (258)
342 TIGR02239 recomb_RAD51 DNA rep 95.9 0.039 8.5E-07 57.9 9.4 57 189-246 94-154 (316)
343 PRK07667 uridine kinase; Provi 95.9 0.01 2.2E-07 57.8 4.6 38 173-214 3-40 (193)
344 PF00485 PRK: Phosphoribulokin 95.9 0.029 6.3E-07 54.7 7.9 78 193-272 1-85 (194)
345 cd01124 KaiC KaiC is a circadi 95.8 0.064 1.4E-06 51.9 10.3 44 194-241 2-45 (187)
346 cd01125 repA Hexameric Replica 95.8 0.085 1.8E-06 53.4 11.5 22 193-214 3-24 (239)
347 TIGR00959 ffh signal recogniti 95.8 0.075 1.6E-06 58.0 11.5 25 190-214 98-122 (428)
348 COG0468 RecA RecA/RadA recombi 95.8 0.035 7.6E-07 56.4 8.4 88 189-279 58-150 (279)
349 PRK05800 cobU adenosylcobinami 95.8 0.018 3.8E-07 54.5 5.8 80 193-279 3-85 (170)
350 PRK04301 radA DNA repair and r 95.8 0.056 1.2E-06 57.2 10.1 57 189-246 100-160 (317)
351 cd03215 ABC_Carb_Monos_II This 95.8 0.051 1.1E-06 52.4 9.0 53 263-315 115-169 (182)
352 PRK12727 flagellar biosynthesi 95.7 0.053 1.1E-06 59.8 9.9 24 191-214 350-373 (559)
353 PRK10867 signal recognition pa 95.7 0.088 1.9E-06 57.4 11.5 25 190-214 99-123 (433)
354 PRK10820 DNA-binding transcrip 95.7 0.033 7.2E-07 63.2 8.7 133 164-310 204-349 (520)
355 PF13238 AAA_18: AAA domain; P 95.7 0.0067 1.4E-07 54.6 2.5 21 194-214 1-21 (129)
356 smart00534 MUTSac ATPase domai 95.7 0.067 1.4E-06 51.6 9.5 21 193-213 1-21 (185)
357 PF01583 APS_kinase: Adenylyls 95.7 0.016 3.5E-07 53.2 4.8 36 191-228 2-37 (156)
358 PLN03186 DNA repair protein RA 95.7 0.061 1.3E-06 56.9 9.8 57 189-246 121-181 (342)
359 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.084 1.8E-06 53.3 10.5 50 189-242 19-68 (237)
360 PF05659 RPW8: Arabidopsis bro 95.6 0.15 3.3E-06 46.4 11.0 110 2-132 3-115 (147)
361 TIGR00382 clpX endopeptidase C 95.6 0.089 1.9E-06 57.0 11.0 52 162-213 75-138 (413)
362 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.05 1.1E-06 55.6 8.8 41 189-231 34-74 (259)
363 KOG1532 GTPase XAB1, interacts 95.6 0.048 1E-06 53.5 8.0 27 189-215 17-43 (366)
364 KOG0739 AAA+-type ATPase [Post 95.6 0.25 5.5E-06 49.3 12.8 96 164-280 133-235 (439)
365 TIGR02858 spore_III_AA stage I 95.6 0.096 2.1E-06 53.5 10.5 115 191-315 111-234 (270)
366 TIGR02329 propionate_PrpR prop 95.6 0.044 9.6E-07 61.6 8.8 131 164-309 212-357 (526)
367 TIGR00390 hslU ATP-dependent p 95.5 0.029 6.3E-07 59.8 6.8 52 163-214 11-70 (441)
368 cd02019 NK Nucleoside/nucleoti 95.5 0.0091 2E-07 46.8 2.4 22 193-214 1-22 (69)
369 cd03263 ABC_subfamily_A The AB 95.5 0.15 3.3E-06 50.8 11.8 54 263-316 144-198 (220)
370 PRK05986 cob(I)alamin adenolsy 95.5 0.057 1.2E-06 51.3 8.0 117 191-310 22-158 (191)
371 COG1126 GlnQ ABC-type polar am 95.5 0.16 3.4E-06 48.6 10.7 59 260-318 144-204 (240)
372 PRK12726 flagellar biosynthesi 95.5 0.15 3.3E-06 53.8 11.8 104 190-295 205-312 (407)
373 PF12775 AAA_7: P-loop contain 95.5 0.009 2E-07 61.2 2.8 91 174-283 23-113 (272)
374 cd03283 ABC_MutS-like MutS-lik 95.5 0.11 2.5E-06 50.5 10.4 22 192-213 26-47 (199)
375 TIGR02236 recomb_radA DNA repa 95.5 0.071 1.5E-06 56.3 9.7 56 189-245 93-152 (310)
376 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.062 1.3E-06 50.3 8.3 116 192-316 26-146 (157)
377 PRK11388 DNA-binding transcrip 95.5 0.051 1.1E-06 63.8 9.4 131 164-309 325-466 (638)
378 COG4088 Predicted nucleotide k 95.5 0.047 1E-06 51.4 7.0 23 192-214 2-24 (261)
379 KOG3347 Predicted nucleotide k 95.5 0.019 4.1E-07 50.9 4.2 68 192-269 8-75 (176)
380 PRK00889 adenylylsulfate kinas 95.4 0.099 2.2E-06 50.0 9.7 26 190-215 3-28 (175)
381 PRK05480 uridine/cytidine kina 95.4 0.012 2.5E-07 58.3 3.3 26 189-214 4-29 (209)
382 PF13306 LRR_5: Leucine rich r 95.4 0.052 1.1E-06 48.8 7.3 58 572-632 7-66 (129)
383 COG0563 Adk Adenylate kinase a 95.4 0.019 4.2E-07 54.5 4.5 22 193-214 2-23 (178)
384 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.19 4.2E-06 50.4 12.2 114 189-309 18-165 (229)
385 KOG0743 AAA+-type ATPase [Post 95.4 0.29 6.4E-06 52.2 13.5 154 191-379 235-413 (457)
386 KOG2123 Uncharacterized conser 95.4 0.0011 2.5E-08 64.6 -3.8 57 645-701 60-123 (388)
387 TIGR00064 ftsY signal recognit 95.4 0.086 1.9E-06 54.1 9.6 39 189-229 70-108 (272)
388 PRK06731 flhF flagellar biosyn 95.4 0.18 3.8E-06 51.4 11.6 104 191-296 75-182 (270)
389 PRK06547 hypothetical protein; 95.4 0.02 4.3E-07 54.3 4.5 26 189-214 13-38 (172)
390 cd03240 ABC_Rad50 The catalyti 95.4 0.13 2.9E-06 50.4 10.5 53 263-315 132-188 (204)
391 PRK06762 hypothetical protein; 95.4 0.012 2.6E-07 55.8 3.1 24 191-214 2-25 (166)
392 PRK15424 propionate catabolism 95.4 0.042 9E-07 61.8 7.7 47 164-214 219-265 (538)
393 TIGR00235 udk uridine kinase. 95.4 0.014 3E-07 57.6 3.6 26 189-214 4-29 (207)
394 PTZ00301 uridine kinase; Provi 95.4 0.021 4.5E-07 56.0 4.8 23 191-213 3-25 (210)
395 KOG2123 Uncharacterized conser 95.3 0.0027 5.8E-08 62.2 -1.5 81 572-654 36-123 (388)
396 cd03268 ABC_BcrA_bacitracin_re 95.3 0.094 2E-06 51.8 9.4 54 263-316 137-192 (208)
397 PRK13539 cytochrome c biogenes 95.3 0.12 2.7E-06 50.9 10.1 61 264-330 139-201 (207)
398 TIGR00150 HI0065_YjeE ATPase, 95.3 0.024 5.3E-07 50.5 4.5 41 171-215 6-46 (133)
399 PRK10463 hydrogenase nickel in 95.3 0.074 1.6E-06 54.3 8.5 26 189-214 102-127 (290)
400 cd03235 ABC_Metallic_Cations A 95.3 0.19 4.1E-06 49.8 11.5 22 192-213 26-47 (213)
401 TIGR03771 anch_rpt_ABC anchore 95.3 0.21 4.5E-06 50.0 11.7 53 263-315 124-178 (223)
402 PF00006 ATP-synt_ab: ATP synt 95.3 0.065 1.4E-06 52.6 7.8 82 192-279 16-114 (215)
403 COG1066 Sms Predicted ATP-depe 95.2 0.037 8.1E-07 57.9 6.2 82 191-281 93-179 (456)
404 COG4618 ArpD ABC-type protease 95.2 0.087 1.9E-06 56.7 9.1 21 192-212 363-383 (580)
405 KOG0736 Peroxisome assembly fa 95.2 0.51 1.1E-05 53.5 15.2 179 164-367 672-877 (953)
406 PRK05917 DNA polymerase III su 95.2 0.27 5.8E-06 50.4 12.4 132 173-330 6-154 (290)
407 COG0465 HflB ATP-dependent Zn 95.2 0.23 5E-06 55.7 12.8 185 161-370 147-356 (596)
408 PF07726 AAA_3: ATPase family 95.2 0.0092 2E-07 52.2 1.5 27 194-222 2-28 (131)
409 KOG0727 26S proteasome regulat 95.2 0.98 2.1E-05 44.0 15.0 51 164-214 155-212 (408)
410 PRK13949 shikimate kinase; Pro 95.2 0.14 3.1E-06 48.4 9.7 22 193-214 3-24 (169)
411 TIGR03522 GldA_ABC_ATP gliding 95.2 0.26 5.5E-06 51.8 12.6 54 263-316 144-198 (301)
412 PRK11248 tauB taurine transpor 95.2 0.31 6.8E-06 49.8 13.0 22 192-213 28-49 (255)
413 COG1428 Deoxynucleoside kinase 95.2 0.013 2.8E-07 55.7 2.5 25 191-215 4-28 (216)
414 PTZ00035 Rad51 protein; Provis 95.2 0.15 3.2E-06 54.2 10.7 57 189-246 116-176 (337)
415 PTZ00088 adenylate kinase 1; P 95.2 0.017 3.8E-07 57.4 3.6 22 193-214 8-29 (229)
416 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.23 4.9E-06 50.4 11.6 125 192-316 26-182 (246)
417 PF03308 ArgK: ArgK protein; 95.1 0.036 7.9E-07 54.8 5.6 41 172-216 14-54 (266)
418 KOG2170 ATPase of the AAA+ sup 95.1 0.088 1.9E-06 52.8 8.1 115 165-296 83-204 (344)
419 cd02027 APSK Adenosine 5'-phos 95.1 0.2 4.3E-06 46.3 10.3 22 193-214 1-22 (149)
420 COG2842 Uncharacterized ATPase 95.1 0.22 4.8E-06 50.2 11.0 125 163-300 71-195 (297)
421 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.26 5.7E-06 49.2 11.8 23 192-214 49-71 (224)
422 TIGR01069 mutS2 MutS2 family p 95.1 0.21 4.4E-06 59.2 12.6 24 191-214 322-345 (771)
423 cd03285 ABC_MSH2_euk MutS2 hom 95.1 0.013 2.9E-07 58.2 2.4 23 191-213 30-52 (222)
424 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.11 2.3E-06 51.0 8.8 120 192-315 27-169 (200)
425 COG1703 ArgK Putative periplas 95.1 0.029 6.4E-07 56.2 4.7 61 174-238 38-98 (323)
426 KOG0651 26S proteasome regulat 95.1 0.092 2E-06 52.7 8.0 25 190-214 165-189 (388)
427 PRK05201 hslU ATP-dependent pr 95.0 0.053 1.2E-06 57.9 6.8 52 163-214 14-73 (443)
428 PRK09544 znuC high-affinity zi 95.0 0.19 4.2E-06 51.1 10.8 23 192-214 31-53 (251)
429 PRK13543 cytochrome c biogenes 95.0 0.28 6.1E-06 48.6 11.8 23 192-214 38-60 (214)
430 TIGR03574 selen_PSTK L-seryl-t 95.0 0.1 2.3E-06 53.1 8.9 22 193-214 1-22 (249)
431 COG1936 Predicted nucleotide k 95.0 0.018 3.9E-07 52.8 2.7 20 193-212 2-21 (180)
432 cd03244 ABCC_MRP_domain2 Domai 95.0 0.26 5.7E-06 49.2 11.5 22 192-213 31-52 (221)
433 PF10236 DAP3: Mitochondrial r 95.0 1.3 2.9E-05 46.4 17.1 49 324-372 258-306 (309)
434 cd03287 ABC_MSH3_euk MutS3 hom 94.9 0.17 3.8E-06 50.0 9.9 112 191-316 31-160 (222)
435 PRK14721 flhF flagellar biosyn 94.9 0.13 2.8E-06 55.8 9.6 24 191-214 191-214 (420)
436 cd03264 ABC_drug_resistance_li 94.9 0.16 3.5E-06 50.2 9.9 21 193-213 27-47 (211)
437 PF00154 RecA: recA bacterial 94.9 0.052 1.1E-06 56.3 6.3 88 189-279 51-140 (322)
438 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.26 5.6E-06 61.9 12.9 25 190-214 1629-1653(2281)
439 PF01078 Mg_chelatase: Magnesi 94.9 0.035 7.6E-07 53.3 4.6 41 164-212 3-43 (206)
440 PRK03839 putative kinase; Prov 94.9 0.019 4E-07 55.3 2.8 22 193-214 2-23 (180)
441 PRK04040 adenylate kinase; Pro 94.9 0.019 4.2E-07 55.3 2.9 24 191-214 2-25 (188)
442 TIGR01425 SRP54_euk signal rec 94.9 0.25 5.4E-06 53.6 11.6 25 190-214 99-123 (429)
443 cd01121 Sms Sms (bacterial rad 94.9 0.062 1.3E-06 57.7 6.9 81 191-279 82-167 (372)
444 cd03226 ABC_cobalt_CbiO_domain 94.8 0.17 3.8E-06 49.7 9.7 53 263-315 137-191 (205)
445 PRK06002 fliI flagellum-specif 94.8 0.06 1.3E-06 58.5 6.7 85 192-279 166-263 (450)
446 COG1102 Cmk Cytidylate kinase 94.8 0.027 5.8E-07 50.9 3.3 42 193-247 2-43 (179)
447 cd03369 ABCC_NFT1 Domain 2 of 94.8 0.42 9.1E-06 47.1 12.3 53 263-315 136-189 (207)
448 PRK04328 hypothetical protein; 94.8 0.13 2.9E-06 52.1 8.9 41 190-232 22-62 (249)
449 PF08433 KTI12: Chromatin asso 94.8 0.065 1.4E-06 54.7 6.5 23 192-214 2-24 (270)
450 TIGR01360 aden_kin_iso1 adenyl 94.8 0.023 5E-07 55.1 3.2 23 191-213 3-25 (188)
451 PRK10923 glnG nitrogen regulat 94.8 0.1 2.2E-06 59.0 8.8 135 164-310 138-283 (469)
452 PRK06995 flhF flagellar biosyn 94.8 0.21 4.5E-06 55.2 10.7 39 191-229 256-294 (484)
453 PRK00625 shikimate kinase; Pro 94.7 0.02 4.4E-07 54.2 2.6 22 193-214 2-23 (173)
454 TIGR03740 galliderm_ABC gallid 94.7 0.17 3.7E-06 50.6 9.4 54 263-316 135-190 (223)
455 cd03232 ABC_PDR_domain2 The pl 94.7 0.16 3.5E-06 49.4 9.0 22 192-213 34-55 (192)
456 TIGR03575 selen_PSTK_euk L-ser 94.7 0.088 1.9E-06 55.4 7.5 22 194-215 2-23 (340)
457 TIGR01420 pilT_fam pilus retra 94.7 0.11 2.4E-06 55.6 8.4 111 192-313 123-233 (343)
458 COG0488 Uup ATPase components 94.7 1.6 3.5E-05 49.2 17.8 125 192-318 349-504 (530)
459 TIGR02868 CydC thiol reductant 94.7 0.24 5.2E-06 56.9 11.9 23 191-213 361-383 (529)
460 PF13481 AAA_25: AAA domain; P 94.7 0.16 3.5E-06 49.4 9.0 41 192-232 33-81 (193)
461 PRK13948 shikimate kinase; Pro 94.7 0.21 4.6E-06 47.7 9.4 26 189-214 8-33 (182)
462 COG1419 FlhF Flagellar GTP-bin 94.7 0.41 8.8E-06 50.8 12.1 105 191-297 203-310 (407)
463 cd03278 ABC_SMC_barmotin Barmo 94.7 0.33 7.3E-06 47.2 11.0 20 193-212 24-43 (197)
464 PRK14723 flhF flagellar biosyn 94.7 0.24 5.2E-06 57.5 11.4 88 191-280 185-273 (767)
465 PRK07276 DNA polymerase III su 94.7 1.3 2.9E-05 45.6 15.6 69 269-340 103-172 (290)
466 PRK00279 adk adenylate kinase; 94.7 0.091 2E-06 52.2 7.2 21 193-213 2-22 (215)
467 cd02028 UMPK_like Uridine mono 94.6 0.057 1.2E-06 51.7 5.4 22 193-214 1-22 (179)
468 PRK13765 ATP-dependent proteas 94.6 0.049 1.1E-06 62.4 5.6 75 163-247 30-104 (637)
469 TIGR03880 KaiC_arch_3 KaiC dom 94.6 0.26 5.7E-06 49.2 10.4 41 190-232 15-55 (224)
470 PRK00131 aroK shikimate kinase 94.6 0.025 5.4E-07 54.1 2.8 24 191-214 4-27 (175)
471 cd03254 ABCC_Glucan_exporter_l 94.5 0.34 7.4E-06 48.6 11.2 53 263-315 150-203 (229)
472 TIGR01818 ntrC nitrogen regula 94.5 0.3 6.6E-06 55.1 12.0 134 165-310 135-279 (463)
473 PRK10875 recD exonuclease V su 94.5 0.16 3.4E-06 58.3 9.5 114 192-308 168-300 (615)
474 cd01135 V_A-ATPase_B V/A-type 94.5 0.11 2.4E-06 52.4 7.4 88 192-279 70-175 (276)
475 TIGR01188 drrA daunorubicin re 94.5 0.42 9.1E-06 50.3 12.2 22 192-213 20-41 (302)
476 PRK10416 signal recognition pa 94.5 0.16 3.5E-06 53.3 8.9 26 190-215 113-138 (318)
477 COG3640 CooC CO dehydrogenase 94.5 0.049 1.1E-06 52.6 4.5 41 193-234 2-42 (255)
478 PF13479 AAA_24: AAA domain 94.5 0.13 2.7E-06 51.0 7.7 20 192-211 4-23 (213)
479 PRK15453 phosphoribulokinase; 94.5 0.16 3.5E-06 51.3 8.4 25 189-213 3-27 (290)
480 PF06309 Torsin: Torsin; Inte 94.5 0.063 1.4E-06 46.9 4.7 47 165-214 26-76 (127)
481 PF13245 AAA_19: Part of AAA d 94.4 0.072 1.6E-06 42.5 4.7 21 192-212 11-31 (76)
482 TIGR00764 lon_rel lon-related 94.4 0.077 1.7E-06 61.1 6.8 75 163-247 17-91 (608)
483 PF06745 KaiC: KaiC; InterPro 94.4 0.096 2.1E-06 52.5 6.9 43 189-232 17-59 (226)
484 cd03284 ABC_MutS1 MutS1 homolo 94.4 0.18 4E-06 49.9 8.6 21 192-212 31-51 (216)
485 cd03213 ABCG_EPDR ABCG transpo 94.4 0.28 6.1E-06 47.7 9.9 23 192-214 36-58 (194)
486 COG2274 SunT ABC-type bacterio 94.4 0.33 7.3E-06 56.6 11.8 22 192-213 500-521 (709)
487 cd00984 DnaB_C DnaB helicase C 94.4 0.25 5.4E-06 50.1 9.8 53 191-246 13-65 (242)
488 PF13306 LRR_5: Leucine rich r 94.4 0.079 1.7E-06 47.6 5.5 104 544-657 6-112 (129)
489 PHA02624 large T antigen; Prov 94.3 0.25 5.3E-06 55.2 10.1 39 171-213 415-453 (647)
490 cd02024 NRK1 Nicotinamide ribo 94.3 0.026 5.6E-07 54.0 2.3 22 193-214 1-22 (187)
491 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.025 5.5E-07 54.6 2.3 21 193-213 1-21 (183)
492 PRK13537 nodulation ABC transp 94.3 0.47 1E-05 49.9 12.0 22 192-213 34-55 (306)
493 cd03233 ABC_PDR_domain1 The pl 94.3 0.47 1E-05 46.5 11.2 23 192-214 34-56 (202)
494 cd02021 GntK Gluconate kinase 94.3 0.028 6.1E-07 52.2 2.4 22 193-214 1-22 (150)
495 PRK13545 tagH teichoic acids e 94.3 0.61 1.3E-05 51.9 12.9 122 192-316 51-209 (549)
496 cd02023 UMPK Uridine monophosp 94.3 0.027 5.8E-07 55.2 2.4 22 193-214 1-22 (198)
497 COG1643 HrpA HrpA-like helicas 94.3 0.37 8.1E-06 56.7 11.9 131 170-311 52-206 (845)
498 cd03253 ABCC_ATM1_transporter 94.2 0.4 8.7E-06 48.4 11.0 53 263-315 148-201 (236)
499 cd00227 CPT Chloramphenicol (C 94.2 0.032 7E-07 53.3 2.8 23 192-214 3-25 (175)
500 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.12 2.5E-06 55.3 7.2 107 189-314 60-171 (362)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-81 Score=718.21 Aligned_cols=693 Identities=29% Similarity=0.441 Sum_probs=540.0
Q ss_pred HHHHHHHHHHHHHHhHhccHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 036168 11 LMEKLGSRAFEELSLFYCVKNDAEKLKETLTTVKCVVLDAEEKQVHNHQLRDWLEKLKDACYDAEDLLDDFEVEALRRQV 90 (846)
Q Consensus 11 ~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~ 90 (846)
.++|+.+.+.++...+.+.++.+..|+++|..++++++||+.++.....+..|.+.+++++|+++|.++.|.......+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999999999999999999889999999999999999999999999988766543
Q ss_pred hhccc-ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCcccc-ccccccCCcccCccCCcccc
Q 036168 91 MKQRS-IGRNLRNFFGSSNPIAFRCRMGHQIKKIRERFDEIANMMHKFNLTPGLDDRRR-RAVQEREPSHSFVLPSEIIG 168 (846)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vG 168 (846)
+..-. .....+.. +-..+++..+..+..+.+++..+.+.+..++.......... ..........+...... ||
T Consensus 88 ~~~l~~~~~~~~~~----c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG 162 (889)
T KOG4658|consen 88 NDLLSTRSVERQRL----CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VG 162 (889)
T ss_pred hHHhhhhHHHHHHH----hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-cc
Confidence 21100 00001111 11145566666777777777777666666654332111111 01101111222223334 99
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchh-hhccCCeeEEEEecCcccHHHHHHHHHHHhc
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQS-VQEHFKLKIWICVSEDFEQRQIMTKIIKSIT 247 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 247 (846)
.+..++++.+.|.+.+ ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++.+|+..++
T Consensus 163 ~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 163 LETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred HHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 9999999999998743 37999999999999999999999987 9999999999999999999999999999987
Q ss_pred CCC--CCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH-hCCCCCCCc
Q 036168 248 GQN--PGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI-MGTMRGTAG 324 (846)
Q Consensus 248 ~~~--~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~-~~~~~~~~~ 324 (846)
... +.....++++..|.+.|++|||+|||||||+.. .|+.+...+|....||+|++|||+..|+.. ++.. ..
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~---~~ 311 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD---YP 311 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC---cc
Confidence 533 333345788999999999999999999999874 499999999999899999999999999988 5553 48
Q ss_pred EecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhccc----c
Q 036168 325 YKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKL----E 400 (846)
Q Consensus 325 ~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~----~ 400 (846)
+++..|+.+|||+||++.++.......+.+.++|++|+++|+|+|||+.++|+.|+.+++..+|+.+.....+.+ .
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 999999999999999999988766656678999999999999999999999999999999999999987665542 2
Q ss_pred ccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCccc
Q 036168 401 QKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQD 480 (846)
Q Consensus 401 ~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~ 480 (846)
+..+.+..++.+||+.||++.|.||+|||+||+|+.|+.+.|+.+|+||||+.+...+..++++|+.|+.+|++++|++.
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 23467899999999999999999999999999999999999999999999999876788999999999999999999998
Q ss_pred ccCCCCCCCcceeEEEEchHHHHHHHHhhc-----cccEEecCCC-------CCCCCceeEEEEEcCCCCcchhhhhhcc
Q 036168 481 FTNGMLPEGFEIFFFKMHDLMHDLAQLVAK-----GEFLILGSDC-------QSIPKRVRHLSFVGANTSINDFSSLLSD 548 (846)
Q Consensus 481 ~~~~~~~~~~~~~~~~mH~lv~~~~~~~~~-----~e~~~~~~~~-------~~~~~~~r~l~~~~~~~~~~~~~~~~~~ 548 (846)
.... ++..+|+|||++|++|.+++. .+..++..+. ..-+..+|++++..+.... ...-..
T Consensus 472 ~~~~-----~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~ 543 (889)
T KOG4658|consen 472 ERDE-----GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSE 543 (889)
T ss_pred cccc-----cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCC
Confidence 7654 566799999999999999998 5555554431 1123578999998876531 233455
Q ss_pred cccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCC-hhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCc
Q 036168 549 SRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSA-IEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQ 627 (846)
Q Consensus 549 ~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 627 (846)
+++|++|.+..+.. ........+|..++.|++|||++|. +..+|..++.+.|||||+|+++ .+..+|..+.+|+.|.
T Consensus 544 ~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 66899999985431 1234455678999999999999764 5699999999999999999975 5889999999999999
Q ss_pred EEecCCcCCCccccccccccCCCcEEEeccccccccc---ccCCCCCCCCEeccccccCcccchhhccCCCCcC----EE
Q 036168 628 TVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE---SGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLR----TI 700 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L 700 (846)
+||+..+.....+|.....|++|++|.+.......-. ..+.++.+|+.|....... .+...+..++.|+ .+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence 9999998877777877788999999999765422111 2234444444444433222 1122233344444 22
Q ss_pred EeecCCCCccccccccCCCCcCeEecccCccc
Q 036168 701 FIADCPRLISLPPAVKYLSSLETLMLEDCESL 732 (846)
Q Consensus 701 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 732 (846)
.+.+| .....+..+..+.+|+.|.+.+|...
T Consensus 700 ~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 700 SIEGC-SKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhccc-ccceeecccccccCcceEEEEcCCCc
Confidence 22222 33445556677788888888887654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-61 Score=586.81 Aligned_cols=647 Identities=22% Similarity=0.334 Sum_probs=439.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccCCCccc-----cccccccCCcccCccCCccccchHHHHHHHHHHhcCCCCCCccee
Q 036168 118 HQIKKIRERFDEIANMMHKFNLTPGLDDRR-----RRAVQEREPSHSFVLPSEIIGRDEDREKIIELLMQTNDGESETVS 192 (846)
Q Consensus 118 ~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 192 (846)
.++++|++++.+++...+ +.......+.. ...+...-...+..+...+|||+++++++..+|.... ..++
T Consensus 134 ~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 468999999999988643 22211000000 0111111112334456789999999999999885432 5689
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe---cCcc-----------c-HHHHHHHHHHHhcCCCC-CCCCH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV---SEDF-----------E-QRQIMTKIIKSITGQNP-GDLDT 256 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~-~~~~~ 256 (846)
+|+|+||||+||||||+++|+ +...+|+..+|+.. +... . ...++.+++.++..... ....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC-
Confidence 999999999999999999998 57778988887742 1110 0 12345555555533221 1111
Q ss_pred HHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCCCCCCcEecCCCChHHHH
Q 036168 257 DQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGTMRGTAGYKLEGLPYESCL 336 (846)
Q Consensus 257 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~ 336 (846)
...++++++++|+||||||||+. .+|+.+.....+.++||+||||||++.++..++.. +.|+++.+++++||
T Consensus 286 ---~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 286 ---LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELAL 357 (1153)
T ss_pred ---HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHH
Confidence 14567788999999999999754 67888887777778999999999999998776543 38999999999999
Q ss_pred HHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhccccccCCCchHHHHHhHhc
Q 036168 337 SLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQ 416 (846)
Q Consensus 337 ~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~ 416 (846)
+||+++||.... +.+++.+++++|+++|+|+|||++++|+.|+.+ +..+|+.++...... ....|..+|++||+.
T Consensus 358 ~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~ 432 (1153)
T PLN03210 358 EMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDG 432 (1153)
T ss_pred HHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhc
Confidence 999999997643 244688999999999999999999999999964 678999988765432 245799999999999
Q ss_pred CCh-hhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEE
Q 036168 417 LPP-HLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFF 495 (846)
Q Consensus 417 L~~-~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~ 495 (846)
|++ ..|.||+++|+||.+..++ .+..|.+.+.... +..++.|++++||+...+ .+
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~~----------~~ 488 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRED----------IV 488 (1153)
T ss_pred cCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcCC----------eE
Confidence 987 5999999999999987654 3667777654421 123899999999986432 48
Q ss_pred EEchHHHHHHHHhhccccE-------EecCC-------CCCCCCceeEEEEEcCCCCcc-hhhhhhcccccceEEEeccC
Q 036168 496 KMHDLMHDLAQLVAKGEFL-------ILGSD-------CQSIPKRVRHLSFVGANTSIN-DFSSLLSDSRRARTILFPIN 560 (846)
Q Consensus 496 ~mH~lv~~~~~~~~~~e~~-------~~~~~-------~~~~~~~~r~l~~~~~~~~~~-~~~~~~~~~~~lr~l~l~~~ 560 (846)
.|||++|+||+++++.+.. ..... .......++.+++........ -....+.++++|+.|.+..+
T Consensus 489 ~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence 9999999999999876531 11100 011234566666654332211 11234666777776665422
Q ss_pred CCc--------ch-------------------hHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcc
Q 036168 561 DEK--------TN-------------------QSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKI 613 (846)
Q Consensus 561 ~~~--------~~-------------------~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 613 (846)
... .+ ...++..| .+.+|+.|+|++|.+..+|..+..+++|++|+|++|..+
T Consensus 569 ~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence 100 00 01111112 346788888888888888888888888999998887777
Q ss_pred cccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc-cccccccCCCCCCCCEeccccccCcccchhh--
Q 036168 614 KKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ-KSLLESGIGCLSSLRFLMISDCENLEYLFDD-- 690 (846)
Q Consensus 614 ~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 690 (846)
+.+|. ++.+++|++|++++|..+..+|..+.++++|+.|++++|. +..+|..+ ++++|+.|++++|..+..+|..
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~ 725 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIST 725 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccC
Confidence 77775 7788888888888888888888888888888888888763 44555544 5677777777776544332211
Q ss_pred ------------------c------------------------------cCCCCcCEEEeecCCCCccccccccCCCCcC
Q 036168 691 ------------------I------------------------------DQLCVLRTIFIADCPRLISLPPAVKYLSSLE 722 (846)
Q Consensus 691 ------------------l------------------------------~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~ 722 (846)
+ ...++|+.|++++|+.+..+|..++++++|+
T Consensus 726 nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred CcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 0 0123566777777766777777777888888
Q ss_pred eEecccCcccchhhhhhcccccccc------c---CCC-----CCcccceEEccCCCCCCCCchhhhcCCCCccceeecc
Q 036168 723 TLMLEDCESLTLNLKIEMEGEESHC------D---RNK-----TRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIR 788 (846)
Q Consensus 723 ~L~l~~~~~l~~~~~~~~~~~~~~~------~---~~l-----~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~ 788 (846)
.|++++|..++.. +...... . ..+ ...+|+.|++++ ..+..+|.++ ..+++|++|+|+
T Consensus 806 ~L~Ls~C~~L~~L-----P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si--~~l~~L~~L~L~ 877 (1153)
T PLN03210 806 HLEIENCINLETL-----PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGIEEVPWWI--EKFSNLSFLDMN 877 (1153)
T ss_pred EEECCCCCCcCee-----CCCCCccccCEEECCCCCccccccccccccCEeECCC-CCCccChHHH--hcCCCCCEEECC
Confidence 8888887655411 1000000 0 000 011344455544 2444566665 667777777777
Q ss_pred cccccccCCcCCCCCCCcceeeccCCcccccc
Q 036168 789 NCPNFMALPESLRNLEALETLAIGGCPALSER 820 (846)
Q Consensus 789 ~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 820 (846)
+|+.+..+|..+..+++|+.|++++|++|...
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 77777777776777777777777777777644
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-41 Score=357.81 Aligned_cols=279 Identities=36% Similarity=0.625 Sum_probs=223.0
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG 248 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 248 (846)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++...+.+|+.++|+.++...+..+++.+|+..+..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998754 458999999999999999999999987788999999999999999999999999999975
Q ss_pred CCC---CCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCCCCCCcE
Q 036168 249 QNP---GDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGTMRGTAGY 325 (846)
Q Consensus 249 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~~~ 325 (846)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+... ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~ 152 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVI 152 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc--cccc
Confidence 532 4567888999999999999999999999765 57888888888777899999999999887665431 2479
Q ss_pred ecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHHHHhhhhccccc---c
Q 036168 326 KLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLEQ---K 402 (846)
Q Consensus 326 ~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~ 402 (846)
++++|+.++|++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+.+........ .
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999997655222344567889999999999999999999997666778899887665444322 3
Q ss_pred CCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCC
Q 036168 403 KNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSP 455 (846)
Q Consensus 403 ~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~ 455 (846)
...+..++.+||+.||++.|.||+|||+||+++.|+.+.++++|+++|++...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 45688999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=7e-22 Score=243.37 Aligned_cols=277 Identities=21% Similarity=0.242 Sum_probs=134.9
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChh-hhhhhhcccCccCe
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIE-VLSREIGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~ 604 (846)
.++.+.+..+... ...+..+..+++|+.|.+..+... ..++...+..+++|++|+|++|.+. .+|. +.+++|++
T Consensus 70 ~v~~L~L~~~~i~-~~~~~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNIS-GKISSAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCcc-ccCChHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4555555544332 122344556666666666543321 1233334445566666666665554 2221 33455555
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEeccccccC
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISDCEN 683 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 683 (846)
|+|++|.....+|..++.+++|++|++++|.....+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 555555444445555555555555555555444445555555555555555555444 3444455555555555555544
Q ss_pred cccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccch-------------------hhhhhccccc
Q 036168 684 LEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTL-------------------NLKIEMEGEE 744 (846)
Q Consensus 684 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~-------------------~~~~~~~~~~ 744 (846)
...+|..++.+++|+.|++++|.....+|..+.++++|++|++++|..... .+....+.
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-- 302 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-- 302 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh--
Confidence 444455555555555555555544444455555555555555554421110 00000000
Q ss_pred ccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 745 SHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 745 ~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
......+|+.++++++.....+|.++ ..+++|+.|+|++|...+.+|..++.+++|+.|++++|.
T Consensus 303 ----~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 303 ----LVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ----hHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 00011245555555444333444444 455666666666665555555555566666666666554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=8.6e-22 Score=242.54 Aligned_cols=305 Identities=17% Similarity=0.159 Sum_probs=145.4
Q ss_pred eeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChh-hhhhhhcccCccCee
Q 036168 527 VRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIE-VLSREIGNLKHLRYL 605 (846)
Q Consensus 527 ~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L 605 (846)
++.+.+..+... ...+..+..+++|+.|.+..+.. ...++..+.++++|++|+|++|.+. .+|..++++++|++|
T Consensus 142 L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 142 LETLDLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCEEECcCCccc-ccCChHHhcCCCCCEEECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 444444433322 12333444555555555543221 1122333445555555555555544 344455555555555
Q ss_pred eccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEeccccccCc
Q 036168 606 DLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 606 ~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
+|++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.+. .+|..+..+++|++|++++|...
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555444445555555555555555555444444555555555555555555443 33444445555555555554444
Q ss_pred ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhccccc--------------ccccCC
Q 036168 685 EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEE--------------SHCDRN 750 (846)
Q Consensus 685 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--------------~~~~~~ 750 (846)
..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.... .+........ ..+...
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC-cCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 4444444555555555555554444444444455555555555443111 0000000000 000000
Q ss_pred CCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCC
Q 036168 751 KTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWP 830 (846)
Q Consensus 751 l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 830 (846)
....+|+.+++.+++-...+|.++ ..+++|+.|+|++|...+.+|..+..+++|+.|++++|.... ....
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~~~ 446 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG--------RINS 446 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC--------ccCh
Confidence 001134455555444333455555 566777777777776666667667777777777777764221 1111
Q ss_pred cccccceeeeCCCCCC
Q 036168 831 KIAHIPQVCLEDESDN 846 (846)
Q Consensus 831 ~i~~i~~l~~~~~~~n 846 (846)
.+..+++++.+++++|
T Consensus 447 ~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 447 RKWDMPSLQMLSLARN 462 (968)
T ss_pred hhccCCCCcEEECcCc
Confidence 2335566777776665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.6e-22 Score=207.00 Aligned_cols=200 Identities=23% Similarity=0.301 Sum_probs=105.6
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCC-------------------------ce
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQ-------------------------FL 579 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~-------------------------~L 579 (846)
..++++.+... ...++|..+..+.+|..|.+..+.. ..+.+.++.++ .|
T Consensus 32 t~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 32 TQMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hheeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 34566655433 3345666667777776666553221 11222233444 44
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhh-hcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSI-CELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
.+||||+|.+...|..+..-+++-.|+||+|+ +..+|..+ -+|..|-+||||+|+ ++.+|..+..|.+|++|+|++|
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCC
Confidence 44444444444444444444444444444332 34444322 244444445554433 4444444455555555555554
Q ss_pred ccccc-cccCCCCCCCCEeccccccC-cccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccc
Q 036168 659 QKSLL-ESGIGCLSSLRFLMISDCEN-LEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLT 733 (846)
Q Consensus 659 ~~~~~-~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 733 (846)
.+... ...+-.+++|++|.+++.+. +..+|.++..+.||+.++++.| .+..+|..+.++++|+.|+||+|...+
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceee
Confidence 44311 01122334444444443221 2346777788888888888876 577888888888999999999886543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=3.5e-19 Score=219.16 Aligned_cols=285 Identities=24% Similarity=0.275 Sum_probs=173.9
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCC-hhhhhhhhcccCc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSA-IEVLSREIGNLKH 601 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~l~~ 601 (846)
+|..+|.+.+..+... .+|..+ ...+|+.|.+..+.. ..++..+..+++|+.|+|+++. +..+| .++.+++
T Consensus 587 lp~~Lr~L~~~~~~l~--~lP~~f-~~~~L~~L~L~~s~l----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~ 658 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLR--CMPSNF-RPENLVKLQMQGSKL----EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN 658 (1153)
T ss_pred cCcccEEEEecCCCCC--CCCCcC-CccCCcEEECcCccc----cccccccccCCCCCEEECCCCCCcCcCC-ccccCCc
Confidence 4556777776654322 233222 345566665553221 1122234455666666666543 33443 3555566
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCC---------------------cEEEeccccc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNL---------------------RMFVVSTKQK 660 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L---------------------~~L~l~~~~~ 660 (846)
|+.|+|++|..+..+|..++++++|+.|++++|..++.+|..+ ++++| +.|++++|.+
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc
Confidence 6666666665555666666666666666666665555555443 34444 4444444444
Q ss_pred ccccccC------------------------------CCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcc
Q 036168 661 SLLESGI------------------------------GCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLIS 710 (846)
Q Consensus 661 ~~~~~~~------------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 710 (846)
..+|..+ ..+++|+.|++++|..+..+|..++++++|+.|+|++|..++.
T Consensus 738 ~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 4444321 1134788888888888888999999999999999999999999
Q ss_pred ccccccCCCCcCeEecccCcccchhhhh--hc-------ccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCc
Q 036168 711 LPPAVKYLSSLETLMLEDCESLTLNLKI--EM-------EGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKT 781 (846)
Q Consensus 711 l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~-------~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~ 781 (846)
+|..+ ++++|+.|++++|..+...... .. ......+.......+|+.|++.+|+.+..+|... ..+++
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~ 894 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKH 894 (1153)
T ss_pred eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccC
Confidence 99876 7899999999999776521100 00 0000001011122379999999999999998776 78999
Q ss_pred cceeecccccccccCCcC-------------CCCCCCcceeeccCCccccc
Q 036168 782 LKTLIIRNCPNFMALPES-------------LRNLEALETLAIGGCPALSE 819 (846)
Q Consensus 782 L~~L~L~~~~~l~~lp~~-------------~~~l~~L~~L~l~~c~~l~~ 819 (846)
|+.|++++|..+..++-. ...+|....+.+.+|.++..
T Consensus 895 L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 895 LETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 999999999888754320 01233445566777766653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=4.7e-21 Score=200.17 Aligned_cols=263 Identities=23% Similarity=0.260 Sum_probs=160.2
Q ss_pred hhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhh
Q 036168 542 FSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSIC 621 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 621 (846)
.|..+...+++-.|.++.++. ..++...|.++..|-.||||+|.+..+|+.+..+.+|+.|.|++|...----..+-
T Consensus 118 vP~~LE~AKn~iVLNLS~N~I---etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNI---ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred cchhhhhhcCcEEEEcccCcc---ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc
Confidence 334444444444454443332 33444455555566666666666666666666666666666665542111001122
Q ss_pred cCCCCcEEecCCcC-CCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEE
Q 036168 622 ELHSLQTVCLGGCR-ELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTI 700 (846)
Q Consensus 622 ~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 700 (846)
.+++|++|.+++.. .+..+|.++..+.||+.+++|.|.+..+|..+-++++|+.|+|++|. ++.+....+...+|++|
T Consensus 195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETL 273 (1255)
T ss_pred cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhh
Confidence 34455555555533 23446666777777777777777777777777777777777777754 33444455556677777
Q ss_pred EeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCC
Q 036168 701 FIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTK 780 (846)
Q Consensus 701 ~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~ 780 (846)
+++.| .++.+|..++.+++|+.|.+.+|. ++ ..+.++..-...+|..+...+ +.+.-.|+.+ ..|+
T Consensus 274 NlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~---------FeGiPSGIGKL~~Levf~aan-N~LElVPEgl--cRC~ 339 (1255)
T KOG0444|consen 274 NLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LT---------FEGIPSGIGKLIQLEVFHAAN-NKLELVPEGL--CRCV 339 (1255)
T ss_pred ccccc-hhccchHHHhhhHHHHHHHhccCc-cc---------ccCCccchhhhhhhHHHHhhc-cccccCchhh--hhhH
Confidence 77776 366778888888888888877663 22 111111111112444444443 4455678888 8899
Q ss_pred ccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCC
Q 036168 781 TLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKP 823 (846)
Q Consensus 781 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~ 823 (846)
.|+.|.|+.| .+-.+|+.+.-++.|+.|++..||+|.-...+
T Consensus 340 kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 340 KLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred HHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 9999999987 46678999999999999999999988754443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-18 Score=180.48 Aligned_cols=274 Identities=19% Similarity=0.140 Sum_probs=144.9
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCe
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~ 604 (846)
.+.++.+..+.... .-...+..++-||+|.++.+.. ..+...+|..-.+++.|+|++|.|+.+- ..|.++.+|..
T Consensus 126 hl~~L~L~~N~I~s-v~se~L~~l~alrslDLSrN~i---s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 126 HLEKLDLRHNLISS-VTSEELSALPALRSLDLSRNLI---SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred ceeEEeeecccccc-ccHHHHHhHhhhhhhhhhhchh---hcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 45666666554331 1123455566666666653322 2333345566666777777777776543 34666677777
Q ss_pred eeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccc-cccccccCCC------------------------cEEEeccc
Q 036168 605 LDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEEL-PKDIRYLVNL------------------------RMFVVSTK 658 (846)
Q Consensus 605 L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L------------------------~~L~l~~~ 658 (846)
|.|+.|. ++.+| ..|.+|++|+.|+|..|.. +.. ...|..|++| ++|+|..|
T Consensus 202 lkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 202 LKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eecccCc-ccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 7777664 44444 4455577777777776652 211 2223333333 33333333
Q ss_pred cccccc-ccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhh
Q 036168 659 QKSLLE-SGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLK 737 (846)
Q Consensus 659 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~ 737 (846)
++..+. .++.+|++|+.|+++.|..-..-+.....+++|+.|+|+.|....--+..|..+..|++|.|++|..-.
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~---- 355 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH---- 355 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH----
Confidence 333221 223344444444444443333333444444555555555543222222334444555555555542110
Q ss_pred hhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC-cCCCCCCCcceeeccCCcc
Q 036168 738 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP-ESLRNLEALETLAIGGCPA 816 (846)
Q Consensus 738 ~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~ 816 (846)
+....+....++..++|+++.|+.|-.- -...+ ..+++|+.|.|.||+ ++.+| ..|.++++|++|+|.+|+.
T Consensus 356 --l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f--~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 356 --LAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAF--NGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred --HHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhh--ccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 1112222334555667777777765432 22223 568899999998884 56665 3577888999999988873
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.3e-18 Score=181.13 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=210.8
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCe
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~ 604 (846)
.+.++.+..+....- -...|..+..|-+|.+..+.. ..++...|+++++|+.|+|..|.+..+ .-.|.++++|+.
T Consensus 174 ni~~L~La~N~It~l-~~~~F~~lnsL~tlkLsrNri---ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTL-ETGHFDSLNSLLTLKLSRNRI---TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CceEEeecccccccc-ccccccccchheeeecccCcc---cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 567777776655422 235677788888888875443 345667889999999999999999855 567999999999
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEeccccccC
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISDCEN 683 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 683 (846)
|.|..|....--...|..|.++++|+|+.|+....-...+-+|+.|++|++|+|.+. ..+..+..+++|+.|+|+.|..
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 999988644444566889999999999998855555567789999999999999998 4457788999999999999887
Q ss_pred cccchhhccCCCCcCEEEeecCCCCcccc-ccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEcc
Q 036168 684 LEYLFDDIDQLCVLRTIFIADCPRLISLP-PAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVE 762 (846)
Q Consensus 684 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~ 762 (846)
.+.-+..|..+..|+.|+|++|+ +..+. ..|..+++|++|+|++|.. .+.+.... .. .....+|+.|.+.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~l-----s~~IEDaa-~~--f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNEL-----SWCIEDAA-VA--FNGLPSLRKLRLT 400 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeE-----EEEEecch-hh--hccchhhhheeec
Confidence 77667889999999999999985 45444 4478899999999999842 22222111 11 1113377888887
Q ss_pred CCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccc
Q 036168 763 GLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPAL 817 (846)
Q Consensus 763 ~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 817 (846)
+ +++..+|...+ ..+++|+.|+|.+|.+.+.-|..|..+ .|++|.+..-.-+
T Consensus 401 g-Nqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 401 G-NQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred C-ceeeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 7 56667776443 789999999999999888888888888 8999987654433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=4.5e-18 Score=169.67 Aligned_cols=245 Identities=24% Similarity=0.302 Sum_probs=178.5
Q ss_pred hcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCC
Q 036168 546 LSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHS 625 (846)
Q Consensus 546 ~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 625 (846)
+.++..+.++.+..+. ...++..+..+..+..|+.++|.+..+|..++.+..|+.|+.+.|. ...+|++++.+..
T Consensus 64 l~nL~~l~vl~~~~n~----l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNK----LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLD 138 (565)
T ss_pred hhcccceeEEEeccch----hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhh
Confidence 4445555555554222 2344556677777888888888888888888888888888888764 6677777888888
Q ss_pred CcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 626 LQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 626 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
|+.|+..+|. +..+|.++.++.+|..|++.+|.+..+|+..-.++.|++|+... +.++.+|+.++.+.+|..|++..|
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc
Confidence 8888887655 67778888888888888888888887766666688888888766 456778888888888888888887
Q ss_pred CCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcccee
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTL 785 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L 785 (846)
.+..+| .|..|..|.+|+++.|..-. .+.+.... ..+|..|++.+ +.+++.|..+ .-+.+|++|
T Consensus 217 -ki~~lP-ef~gcs~L~Elh~g~N~i~~------lpae~~~~-----L~~l~vLDLRd-Nklke~Pde~--clLrsL~rL 280 (565)
T KOG0472|consen 217 -KIRFLP-EFPGCSLLKELHVGENQIEM------LPAEHLKH-----LNSLLVLDLRD-NKLKEVPDEI--CLLRSLERL 280 (565)
T ss_pred -ccccCC-CCCccHHHHHHHhcccHHHh------hHHHHhcc-----cccceeeeccc-cccccCchHH--HHhhhhhhh
Confidence 466777 57888888888888763211 11111111 11556666665 4566778777 678899999
Q ss_pred ecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 786 IIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 786 ~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
|+++| .++.+|..++++ .|+.|-+.|||
T Consensus 281 DlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 281 DLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 99998 567889899999 99999999998
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=2.7e-17 Score=164.11 Aligned_cols=225 Identities=26% Similarity=0.312 Sum_probs=187.4
Q ss_pred HhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCC
Q 036168 571 SCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNL 650 (846)
Q Consensus 571 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 650 (846)
.-+.++..|.+|++++|.+..+|++++.+..++.|+.+.|+ +..+|+.++.+.+|..|+.+.|. ...+|.+++.+..|
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDL 139 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhh
Confidence 34678899999999999999999999999999999999875 88999999999999999999976 67788899999999
Q ss_pred cEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 651 RMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 651 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
..|+..+|+++.+|.++.++.+|..|++.+|... .+|+..-.++.|++|+...| .++.+|+.++.+.+|+.|++..|.
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc
Confidence 9999999999999999999999999999997654 45555555999999998876 689999999999999999999985
Q ss_pred ccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceee
Q 036168 731 SLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLA 810 (846)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 810 (846)
...+. ++++ +-.|+.++++. +.+..+|.... ..+++|..|||++| .++.+|..+..+.+|+.||
T Consensus 218 i~~lP---ef~g----------cs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 218 IRFLP---EFPG----------CSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLD 281 (565)
T ss_pred cccCC---CCCc----------cHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhc
Confidence 43211 1111 22355555543 34455665552 58999999999998 6889999999999999999
Q ss_pred ccCCc
Q 036168 811 IGGCP 815 (846)
Q Consensus 811 l~~c~ 815 (846)
+++|.
T Consensus 282 lSNN~ 286 (565)
T KOG0472|consen 282 LSNND 286 (565)
T ss_pred ccCCc
Confidence 99985
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.56 E-value=2.4e-13 Score=166.97 Aligned_cols=300 Identities=14% Similarity=0.122 Sum_probs=184.4
Q ss_pred CccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHH
Q 036168 160 FVLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQI 238 (846)
Q Consensus 160 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~ 238 (846)
|..+..+|-|+.-.+.+. .. ...+++.|+|++|.||||++..+.+. ++.++|+++... .++...
T Consensus 10 p~~~~~~~~R~rl~~~l~----~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f 74 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLS----GA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERF 74 (903)
T ss_pred CCCccccCcchHHHHHHh----cc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHH
Confidence 344566777876555443 21 34679999999999999999998752 235889998644 455566
Q ss_pred HHHHHHHhcCCCC-------------CCCCHHHHHHHHHHHhc--CceEEEEeeccCCCChhhHH-HHHHhhCCCCCCcE
Q 036168 239 MTKIIKSITGQNP-------------GDLDTDQLRRILRDRLN--GEIYLLVMDDVWNEDPKVWD-ELKSLLLGSAKGSK 302 (846)
Q Consensus 239 ~~~i~~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ 302 (846)
...++..+..... ...+...+...+...+. +.+++|||||++..+..... .+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 6666666631110 11222333333333332 67899999999876544433 44455555566778
Q ss_pred EEEeCCChHHHHHhCCCCCCCcEecC----CCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 303 ILVTTRSNKVASIMGTMRGTAGYKLE----GLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 303 iiiTtR~~~~~~~~~~~~~~~~~~l~----~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
+|||||..................+. +|+.+|+.++|...... .. ..+.+.+|.+.|+|+|+++..++..
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~---~~---~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS---PI---EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC---CC---CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999984211110000001134555 99999999999876521 11 2255689999999999999999887
Q ss_pred hcCCCCHHHHHHHHhhhhccccc-cCCCchHHH-HHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCC
Q 036168 379 LYGSTDEHYWEYVRDNEIWKLEQ-KKNDILPAL-RLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPN 456 (846)
Q Consensus 379 l~~~~~~~~w~~~~~~~~~~~~~-~~~~v~~~l-~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~ 456 (846)
+........ .. ...+.. ....+...+ .-.++.||+..+..+...|+++ .++.. +... +..
T Consensus 229 ~~~~~~~~~--~~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~-----l~~--- 290 (903)
T PRK04841 229 ARQNNSSLH--DS----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVR-----VTG--- 290 (903)
T ss_pred HhhCCCchh--hh----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHH-----HcC---
Confidence 754322100 00 011111 122355544 3348999999999999999986 33332 2211 111
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHHHhh
Q 036168 457 ENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQLVA 509 (846)
Q Consensus 457 ~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~~~~ 509 (846)
.+.+...+++|.+.+++....+. ...+|++|++++++.+...
T Consensus 291 -----~~~~~~~L~~l~~~~l~~~~~~~------~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -----EENGQMRLEELERQGLFIQRMDD------SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -----CCcHHHHHHHHHHCCCeeEeecC------CCCEEehhHHHHHHHHHHH
Confidence 11245779999999997533221 1246888999999987765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-16 Score=140.91 Aligned_cols=128 Identities=28% Similarity=0.459 Sum_probs=63.7
Q ss_pred cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEecc
Q 036168 599 LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMI 678 (846)
Q Consensus 599 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 678 (846)
+.+++.|.|++|. ++.+|+.+..+.+|+.|++++|. ++.+|..++.+++|++|+++-|.+..+|.+|+.++.|+.|++
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 4444444444432 44444445555555555554433 444555555555555555555555555555555555555555
Q ss_pred ccccCc-ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 679 SDCENL-EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 679 ~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
..|+.. ..+|..|..+..|+-|++++| ..+.+|..++++++|+.|.+..|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccC
Confidence 544332 234445555555555555554 34455555555555555555544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.5e-16 Score=138.08 Aligned_cols=141 Identities=28% Similarity=0.454 Sum_probs=81.1
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCC-ccccccccccCCCc
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCREL-EELPKDIRYLVNLR 651 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~ 651 (846)
+..+.+|++|++++|.++.+|.+++.+++|+.|++.-| .+..+|..|+.++-|+.|||++|+.. ..+|..|..++.|+
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 44555666666666666666666666666666666544 35555666666666666666655432 23555565666666
Q ss_pred EEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcccccccc
Q 036168 652 MFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVK 716 (846)
Q Consensus 652 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 716 (846)
.|+++.|.+..+|..++.+++||.|.+.+|..+ ++|..++.++.|+.|.|.+| .++.+|+.++
T Consensus 131 alyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn-rl~vlppel~ 193 (264)
T KOG0617|consen 131 ALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN-RLTVLPPELA 193 (264)
T ss_pred HHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence 666666666666666666666666666654333 35566666666666666655 3444554433
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=1.5e-15 Score=167.39 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=40.9
Q ss_pred hhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCC
Q 036168 542 FSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHD 611 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~ 611 (846)
++..+....+|+.|.+..+. ....+...+++++|++|.|.+|.+..+|.++..+++|++|++++|.
T Consensus 60 fp~~it~l~~L~~ln~s~n~----i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNY----IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred CCchhhhHHHHhhcccchhh----HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 45555556666666555222 2333455566777777777777777777777777777777777654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=3.2e-14 Score=152.41 Aligned_cols=189 Identities=20% Similarity=0.143 Sum_probs=120.4
Q ss_pred hhhhhcccccceEEEeccCCCcc-hhHHHHHhhccCCceeEEEeCCCChh-------hhhhhhcccCccCeeeccCCCcc
Q 036168 542 FSSLLSDSRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSDSAIE-------VLSREIGNLKHLRYLDLSGHDKI 613 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~-------~l~~~~~~l~~L~~L~L~~~~~~ 613 (846)
....+..+.+++.+.+..+.... ....+...+...+.++.|+++++.+. .++..+..+++|++|++++|...
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34555666667788777544321 12234555667777888888776554 23455667778888888877655
Q ss_pred cccchhhhcCCC---CcEEecCCcCCCc----ccccccccc-CCCcEEEecccccc-----cccccCCCCCCCCEecccc
Q 036168 614 KKLPNSICELHS---LQTVCLGGCRELE----ELPKDIRYL-VNLRMFVVSTKQKS-----LLESGIGCLSSLRFLMISD 680 (846)
Q Consensus 614 ~~lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~ 680 (846)
...+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 555555555554 8888888876432 223344555 78888888888766 2333455667788888887
Q ss_pred ccCcc----cchhhccCCCCcCEEEeecCCCC----ccccccccCCCCcCeEecccCc
Q 036168 681 CENLE----YLFDDIDQLCVLRTIFIADCPRL----ISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 681 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
|.... .++..+..+++|+.|++++|... ..++..+..+++|++|++++|.
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 65442 23444556678888888887532 1234456667788888888874
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=4.5e-11 Score=131.59 Aligned_cols=324 Identities=15% Similarity=0.104 Sum_probs=187.8
Q ss_pred cCccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHH
Q 036168 159 SFVLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 159 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 238 (846)
+...|..++||++++++|...+...-.+ .....+.|+|++|+|||++++.+++........-..+++++....+...+
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 3346788999999999999998554222 33456789999999999999999985433322234667777777788889
Q ss_pred HHHHHHHhcCCC--CCCCCHHHHHHHHHHHhc--CceEEEEeeccCCCC----hhhHHHHHHhhCCCCCCcE--EEEeCC
Q 036168 239 MTKIIKSITGQN--PGDLDTDQLRRILRDRLN--GEIYLLVMDDVWNED----PKVWDELKSLLLGSAKGSK--ILVTTR 308 (846)
Q Consensus 239 ~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iiiTtR 308 (846)
+..++.++.+.. ....+.+++...+.+.+. +++.+||||+++... .+.+..+...+... ++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 999999986522 223356677777777764 456899999997532 22333333333222 2333 666666
Q ss_pred ChHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhhccCC--CCCCc-chHHHHHHHHHhhCCCchHHHHHhhhh--
Q 036168 309 SNKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCAFKEG--QHKHP-NLVKIGEEIVKKCGGIPLAVRTLGSLL-- 379 (846)
Q Consensus 309 ~~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~--~~~~~-~~~~~~~~i~~~~~g~Plai~~~~~~l-- 379 (846)
...+..... .......+.+++++.++..+++..++.... ...++ .+..+++......|..+.|+.++-.+.
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 554333211 111123679999999999999998763221 11122 222233333333455667776654322
Q ss_pred c--CC---CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCC--CcccChhHHHHHH--HHcC
Q 036168 380 Y--GS---TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPK--DYDFTSVLLIRFW--MAHG 450 (846)
Q Consensus 380 ~--~~---~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~--~~~~~~~~li~~w--~a~g 450 (846)
+ .. -+.+....+.+.. -.....-.+..||.+.|..+..++...+ ...+....+.... +++.
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 11 1233333322211 1223455688999999988877663321 1234444444322 2221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchH
Q 036168 451 LLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDL 500 (846)
Q Consensus 451 ~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~l 500 (846)
+-. ..........|++.|.+.++|.....+... .|+.+.++++.-
T Consensus 332 ~~~----~~~~~~~~~~~l~~L~~~glI~~~~~~~g~-~g~~~~~~~~~~ 376 (394)
T PRK00411 332 LGY----EPRTHTRFYEYINKLDMLGIINTRYSGKGG-RGRTRLISLSYD 376 (394)
T ss_pred cCC----CcCcHHHHHHHHHHHHhcCCeEEEEecCCC-CCCeEEEEecCC
Confidence 111 111234467799999999999865422111 255556665543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=6.5e-13 Score=151.75 Aligned_cols=235 Identities=23% Similarity=0.231 Sum_probs=149.4
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
..++.|.+..+... .++ ...++|++|.+..|.... ++. ..++|+.|++++|.+..+|.. +.+|+.
T Consensus 222 ~~L~~L~L~~N~Lt--~LP---~lp~~Lk~LdLs~N~Lts----LP~---lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~ 286 (788)
T PRK15387 222 AHITTLVIPDNNLT--SLP---ALPPELRTLEVSGNQLTS----LPV---LPPGLLELSIFSNPLTHLPAL---PSGLCK 286 (788)
T ss_pred cCCCEEEccCCcCC--CCC---CCCCCCcEEEecCCccCc----ccC---cccccceeeccCCchhhhhhc---hhhcCE
Confidence 45667776665443 122 234678888887543321 111 235788888888888877753 356778
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCc
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
|++++|. ++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|. +
T Consensus 287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~-L 354 (788)
T PRK15387 287 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ-L 354 (788)
T ss_pred EECcCCc-ccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCcccccccc---ccccceEecCCCc-c
Confidence 8888774 5666652 4678888888875 4555542 23577778888888776642 3578888888754 4
Q ss_pred ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCC
Q 036168 685 EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGL 764 (846)
Q Consensus 685 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~ 764 (846)
..+|.. .++|+.|++++|. +..+|.. .++|+.|++++|..-. .+. . .-+|+.|+++++
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~------LP~----l-----~s~L~~LdLS~N 412 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTS------LPV----L-----PSELKELMVSGN 412 (788)
T ss_pred CCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccC------CCC----c-----ccCCCEEEccCC
Confidence 445542 3567778887764 5566653 3568888888874211 110 0 124666666663
Q ss_pred CCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 765 PPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 765 ~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
.+..+|.. ..+|+.|++++|. ++.+|..+.++++|+.|+|++|+
T Consensus 413 -~LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 413 -RLTSLPML-----PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -cCCCCCcc-----hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 34455532 2467888888874 55788888888888888888886
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=1.3e-14 Score=160.10 Aligned_cols=244 Identities=23% Similarity=0.254 Sum_probs=160.1
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTV 629 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 629 (846)
.++.++.+..+. ...++..+..+.+|+.|+..+|.+..+|..+....+|++|.+..|. ++.+|+...++++|++|
T Consensus 241 ~nl~~~dis~n~----l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNN----LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhh----hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeee
Confidence 455555554221 2233356667777777777777777777777777777777777653 66777767777777777
Q ss_pred ecCCcCCCccccccc-cccC-CCcEEEeccccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 630 CLGGCRELEELPKDI-RYLV-NLRMFVVSTKQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 630 ~l~~~~~~~~~p~~~-~~l~-~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
+|..|. +..+|..+ ..+. .|+.|+.+.|.+...|.. =...+.|+.|++.+|.......+.+.++++|+.|+|++|.
T Consensus 316 dL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 777755 55555533 2222 256666666666655421 2345678889999988877777889999999999999984
Q ss_pred CCcccccc-ccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcccee
Q 036168 707 RLISLPPA-VKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTL 785 (846)
Q Consensus 707 ~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L 785 (846)
+.++|+. +.++..|+.|+||||..-++. ..... .-.|+.|...+ +.+..+|+ + ..++.|+.+
T Consensus 395 -L~~fpas~~~kle~LeeL~LSGNkL~~Lp-------~tva~-----~~~L~tL~ahs-N~l~~fPe-~--~~l~qL~~l 457 (1081)
T KOG0618|consen 395 -LNSFPASKLRKLEELEELNLSGNKLTTLP-------DTVAN-----LGRLHTLRAHS-NQLLSFPE-L--AQLPQLKVL 457 (1081)
T ss_pred -cccCCHHHHhchHHhHHHhcccchhhhhh-------HHHHh-----hhhhHHHhhcC-Cceeechh-h--hhcCcceEE
Confidence 6777765 788999999999999543311 11111 11333333332 33445553 3 578999999
Q ss_pred ecccccccc-cCCcCCCCCCCcceeeccCCccc
Q 036168 786 IIRNCPNFM-ALPESLRNLEALETLAIGGCPAL 817 (846)
Q Consensus 786 ~L~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l 817 (846)
|++.|.... .+|.... -|+|++|+++||+.+
T Consensus 458 DlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred ecccchhhhhhhhhhCC-CcccceeeccCCccc
Confidence 999886544 3443222 289999999999853
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=4.2e-13 Score=154.44 Aligned_cols=224 Identities=19% Similarity=0.240 Sum_probs=142.2
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTV 629 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 629 (846)
+.++.|.+..+... .++... +++|+.|++++|.+..+|..+. .+|+.|+|++|. +..+|..+. .+|++|
T Consensus 199 ~~L~~L~Ls~N~Lt---sLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELK---SLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCC---cCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEE
Confidence 35666666644332 122221 2478888888888877776554 468888888775 557776554 478888
Q ss_pred ecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCc
Q 036168 630 CLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLI 709 (846)
Q Consensus 630 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 709 (846)
++++|. +..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.. ..+|..+ .++|+.|++++|. +.
T Consensus 268 ~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~-Lt 338 (754)
T PRK15370 268 DLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPETL--PPGLKTLEAGENA-LT 338 (754)
T ss_pred ECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCccc--cccceeccccCCc-cc
Confidence 888765 556776553 478888888888777665442 4678888887644 3455433 3578888888774 55
Q ss_pred cccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeeccc
Q 036168 710 SLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRN 789 (846)
Q Consensus 710 ~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~ 789 (846)
.+|..+ .++|+.|++++|.... + +... ..+|+.|+++++ .+..+|..+ . ++|+.|++++
T Consensus 339 ~LP~~l--~~sL~~L~Ls~N~L~~--L----P~~l--------p~~L~~LdLs~N-~Lt~LP~~l--~--~sL~~LdLs~ 397 (754)
T PRK15370 339 SLPASL--PPELQVLDVSKNQITV--L----PETL--------PPTITTLDVSRN-ALTNLPENL--P--AALQIMQASR 397 (754)
T ss_pred cCChhh--cCcccEEECCCCCCCc--C----Chhh--------cCCcCEEECCCC-cCCCCCHhH--H--HHHHHHhhcc
Confidence 576654 3678888888874221 1 1100 125677777764 455666654 1 3688888888
Q ss_pred ccccccCCcCC----CCCCCcceeeccCCc
Q 036168 790 CPNFMALPESL----RNLEALETLAIGGCP 815 (846)
Q Consensus 790 ~~~l~~lp~~~----~~l~~L~~L~l~~c~ 815 (846)
|. +..+|..+ ..++.+..|++.+||
T Consensus 398 N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 398 NN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 75 44666543 345778888888887
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=4.5e-13 Score=154.18 Aligned_cols=201 Identities=19% Similarity=0.290 Sum_probs=148.7
Q ss_pred CceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEec
Q 036168 577 QFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 656 (846)
+.|+.|+|++|.++.+|..+. .+|++|++++|. ++.+|..+. .+|+.|+|++|. +..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 468999999999999887665 589999999875 667887554 479999999987 557787654 589999999
Q ss_pred ccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhh
Q 036168 657 TKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNL 736 (846)
Q Consensus 657 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~ 736 (846)
+|.+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+ .++|+.|++++|..-.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt~--- 339 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENALTS--- 339 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCcccc---
Confidence 999988876553 589999999874 445665443 478999999885 55677654 3689999999884221
Q ss_pred hhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 737 KIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 737 ~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
++... ..+|+.|+++++ .+..+|..+ .++|+.|+|++|. +..+|..+. ++|+.|++++|.
T Consensus 340 ---LP~~l--------~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 340 ---LPASL--------PPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred ---CChhh--------cCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC
Confidence 11110 126778888775 455677554 3689999999985 557776543 479999999885
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=5.8e-10 Score=121.48 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=177.9
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh-ccC---CeeEEEEecCcccHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ-EHF---KLKIWICVSEDFEQR 236 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~ 236 (846)
..|..++||++++++|...+.....+ .....+.|+|++|+|||++++.+++..... ... -..+|+++....+..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 45668999999999999998753222 334678999999999999999999853211 111 135688887777788
Q ss_pred HHHHHHHHHhc--CCC--CCCCCHHHHHHHHHHHh--cCceEEEEeeccCCCC---hhhHHHHHHhh-CCCC--CCcEEE
Q 036168 237 QIMTKIIKSIT--GQN--PGDLDTDQLRRILRDRL--NGEIYLLVMDDVWNED---PKVWDELKSLL-LGSA--KGSKIL 304 (846)
Q Consensus 237 ~~~~~i~~~l~--~~~--~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ii 304 (846)
.++..++.++. +.. ....+..+....+.+.+ .+++++||||+++... ......+.... .... ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 89999999884 211 12234555666666666 3567899999997652 11122222221 1111 233455
Q ss_pred EeCCChHHHHHh----CCCCCCCcEecCCCChHHHHHHHHHhhccC--CCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 305 VTTRSNKVASIM----GTMRGTAGYKLEGLPYESCLSLFMKCAFKE--GQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 305 iTtR~~~~~~~~----~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~--~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
.+|+........ ........+.+++++.++..+++..++... ....+++..+.+.+++....|.|..+..+...
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555544332211 111112368899999999999999887421 11122333445566777778988554333221
Q ss_pred h-----cCC---CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCC--CCcccChhHHHHHHH-
Q 036168 379 L-----YGS---TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYDFTSVLLIRFWM- 447 (846)
Q Consensus 379 l-----~~~---~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~~~~~~li~~w~- 447 (846)
. ..+ -+.+..+.+.... -.....-+...||.+.+..+..++..- ++..+....+...+.
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 111 1122222211111 112344567889999887776665221 333456666655331
Q ss_pred -HcCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccc
Q 036168 448 -AHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 448 -a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
++.+ . ...........+++.|...|+|....
T Consensus 320 ~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 1211 1 11233567788999999999998754
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.3e-12 Score=146.01 Aligned_cols=234 Identities=22% Similarity=0.212 Sum_probs=160.1
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTV 629 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 629 (846)
++++.|.+..+.... ++ ..+++|++|+|++|.++.+|.. .++|+.|++++|. +..+|..+ .+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~----LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTS----LP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPALP---SGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCC----CC---CCCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhch---hhcCEE
Confidence 368888887544321 11 2357899999999999988753 4689999999875 66777633 578899
Q ss_pred ecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCc
Q 036168 630 CLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLI 709 (846)
Q Consensus 630 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 709 (846)
++++|. +..+|.. +++|+.|++++|.+..+|.. ..+|+.|++++|.. ..+|. ..++|+.|++++|. +.
T Consensus 288 ~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~---lp~~Lq~LdLS~N~-Ls 355 (788)
T PRK15387 288 WIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQL-TSLPT---LPSGLQELSVSDNQ-LA 355 (788)
T ss_pred ECcCCc-ccccccc---ccccceeECCCCccccCCCC---cccccccccccCcc-ccccc---cccccceEecCCCc-cC
Confidence 999986 5667753 47899999999999887753 34678888888654 44553 22589999999884 66
Q ss_pred cccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeeccc
Q 036168 710 SLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRN 789 (846)
Q Consensus 710 ~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~ 789 (846)
.+|.. .++|+.|++++|..-. ++. . ..+|+.|+++++ .+..+|. ..++|+.|++++
T Consensus 356 ~LP~l---p~~L~~L~Ls~N~L~~------LP~----l-----~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~ 411 (788)
T PRK15387 356 SLPTL---PSELYKLWAYNNRLTS------LPA----L-----PSGLKELIVSGN-RLTSLPV-----LPSELKELMVSG 411 (788)
T ss_pred CCCCC---Ccccceehhhcccccc------Ccc----c-----ccccceEEecCC-cccCCCC-----cccCCCEEEccC
Confidence 77763 3578889998874221 111 0 124667777663 4445553 236899999999
Q ss_pred ccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 790 CPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 790 ~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
|. ++.+|.. +.+|+.|++++|. ++.. ...+..++++..+++++|
T Consensus 412 N~-LssIP~l---~~~L~~L~Ls~Nq-Lt~L--------P~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 412 NR-LTSLPML---PSGLLSLSVYRNQ-LTRL--------PESLIHLSSETTVNLEGN 455 (788)
T ss_pred Cc-CCCCCcc---hhhhhhhhhccCc-cccc--------ChHHhhccCCCeEECCCC
Confidence 96 5567863 3578899999876 3322 112445666667777766
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=5.4e-13 Score=142.83 Aligned_cols=240 Identities=19% Similarity=0.114 Sum_probs=165.8
Q ss_pred HHhhccCCceeEEEeCCCChh-----hhhhhhcccCccCeeeccCCCcc------cccchhhhcCCCCcEEecCCcCCCc
Q 036168 570 TSCISKSQFLRVIDLSDSAIE-----VLSREIGNLKHLRYLDLSGHDKI------KKLPNSICELHSLQTVCLGGCRELE 638 (846)
Q Consensus 570 ~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~~~------~~lp~~~~~l~~L~~L~l~~~~~~~ 638 (846)
...+..+..|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 355667778999999999984 46667788889999999987644 2345667789999999999988665
Q ss_pred cccccccccCC---CcEEEecccccc-----cccccCCCC-CCCCEeccccccCcc----cchhhccCCCCcCEEEeecC
Q 036168 639 ELPKDIRYLVN---LRMFVVSTKQKS-----LLESGIGCL-SSLRFLMISDCENLE----YLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 639 ~~p~~~~~l~~---L~~L~l~~~~~~-----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 705 (846)
..+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++..+..+++|+.|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 55655555555 999999999876 223345566 899999999987652 34556778889999999998
Q ss_pred CCCc----cccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCC----CCchhhhcC
Q 036168 706 PRLI----SLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL----ELPQWLLQG 777 (846)
Q Consensus 706 ~~~~----~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~----~l~~~~~~~ 777 (846)
.... .++..+..+++|+.|++++|..-.... ... ........+|+.+++++++-.. .+...+. .
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l------~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-~ 247 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-SAL------AETLASLKSLEVLNLGDNNLTDAGAAALASALL-S 247 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-HHH------HHHhcccCCCCEEecCCCcCchHHHHHHHHHHh-c
Confidence 6542 344455667899999999985321100 000 0001112378888888864221 1111111 1
Q ss_pred CCCccceeeccccccc----ccCCcCCCCCCCcceeeccCCccc
Q 036168 778 STKTLKTLIIRNCPNF----MALPESLRNLEALETLAIGGCPAL 817 (846)
Q Consensus 778 ~l~~L~~L~L~~~~~l----~~lp~~~~~l~~L~~L~l~~c~~l 817 (846)
..+.|++|++++|... ..++..+..+++|+.|++++|.--
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 3479999999999654 133344566789999999998743
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=1.7e-13 Score=137.27 Aligned_cols=240 Identities=20% Similarity=0.167 Sum_probs=163.6
Q ss_pred hHHHHHhhccCCceeEEEeCCCChhh-hhhhhcccCccCeeeccCCCcccccch-hhhcCCCCcEEecCCcCCCcccccc
Q 036168 566 QSILTSCISKSQFLRVIDLSDSAIEV-LSREIGNLKHLRYLDLSGHDKIKKLPN-SICELHSLQTVCLGGCRELEELPKD 643 (846)
Q Consensus 566 ~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~ 643 (846)
..+++.+|+.+++|+.|||++|.|+. -|..|.++..|..|-+.+++.++.+|. .|.+|..|+.|.+.-|...-.....
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 56778899999999999999999985 467899999999988888777888884 5788999999998887765566677
Q ss_pred ccccCCCcEEEecccccccccc-cCCCCCCCCEeccccccCcc------------cchhhccCCC---------------
Q 036168 644 IRYLVNLRMFVVSTKQKSLLES-GIGCLSSLRFLMISDCENLE------------YLFDDIDQLC--------------- 695 (846)
Q Consensus 644 ~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~--------------- 695 (846)
+..+++|..|.+..|.+..++. .+..+.+++++.+..|..+. ..|..++...
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 8899999999999988887665 67788888888877665211 1111221111
Q ss_pred -------CcCEE---EeecCCCCcccc-ccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCC
Q 036168 696 -------VLRTI---FIADCPRLISLP-PAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGL 764 (846)
Q Consensus 696 -------~L~~L---~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~ 764 (846)
+++.+ ..+.|......| ..|..+++|++|+|++|..-. . ....+.....+..+.|..+.|..
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i-----~~~aFe~~a~l~eL~L~~N~l~~- 312 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-I-----EDGAFEGAAELQELYLTRNKLEF- 312 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-h-----hhhhhcchhhhhhhhcCcchHHH-
Confidence 11111 111222222222 237788999999999885322 1 11111111222233444444433
Q ss_pred CCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCcccc
Q 036168 765 PPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALS 818 (846)
Q Consensus 765 ~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 818 (846)
+...++ ..+..|+.|+|.+|++...-|..|..+.+|.+|++-.||-..
T Consensus 313 -----v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 313 -----VSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred -----HHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 322222 688999999999999888889889999999999999888443
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.32 E-value=1.2e-10 Score=129.16 Aligned_cols=304 Identities=18% Similarity=0.206 Sum_probs=193.6
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIM 239 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~ 239 (846)
..+...|-|..- .+.|... ...|.+.|..++|.|||||+..+... ...-..+.|.++.+.. ++....
T Consensus 16 ~~~~~~v~R~rL----~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 16 VRPDNYVVRPRL----LDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred CCcccccccHHH----HHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHH
Confidence 345566666664 4445432 45789999999999999999988751 1122458999987654 566777
Q ss_pred HHHHHHhcCCCC-------------CCCCHHHHHHHHHHHhc--CceEEEEeeccCCCChhh-HHHHHHhhCCCCCCcEE
Q 036168 240 TKIIKSITGQNP-------------GDLDTDQLRRILRDRLN--GEIYLLVMDDVWNEDPKV-WDELKSLLLGSAKGSKI 303 (846)
Q Consensus 240 ~~i~~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~i 303 (846)
..++..+..-.+ ...+...+.+.+..-+. .++..+||||.+...... .+.+.-++...+++-..
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 777777752211 22344445555555443 467999999987654333 33445555667778899
Q ss_pred EEeCCChHHHHHhCCCCCCCcEecC----CCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 304 LVTTRSNKVASIMGTMRGTAGYKLE----GLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 304 iiTtR~~~~~~~~~~~~~~~~~~l~----~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
|||||.+.-.......-.....+++ .|+.+|+.++|..... .+-....++.+.+..+|.+-|+..++=.+
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999987533221111111233333 5899999999997651 22223556899999999999999999888
Q ss_pred cCCCCHHHHHHHHhhhhccccccCCCchH-HHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCC
Q 036168 380 YGSTDEHYWEYVRDNEIWKLEQKKNDILP-ALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNEN 458 (846)
Q Consensus 380 ~~~~~~~~w~~~~~~~~~~~~~~~~~v~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~ 458 (846)
+.+.+.+.--. .+.+...-+.+ ...--++.||++.|..++-+|+++.- ...|+...
T Consensus 238 ~~~~~~~q~~~-------~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------------ 294 (894)
T COG2909 238 RNNTSAEQSLR-------GLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------------ 294 (894)
T ss_pred cCCCcHHHHhh-------hccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------------
Confidence 73333221111 11111111111 23456789999999999999998652 12233221
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHHHhhccc
Q 036168 459 EEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQLVAKGE 512 (846)
Q Consensus 459 ~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~~~~~~e 512 (846)
+.++.+..++++|..++|+-..-+ +...+|+.|.++.+|.+.-...+
T Consensus 295 -tg~~ng~amLe~L~~~gLFl~~Ld------d~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 295 -TGEENGQAMLEELERRGLFLQRLD------DEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred -hcCCcHHHHHHHHHhCCCceeeec------CCCceeehhHHHHHHHHhhhccc
Confidence 123447788999999999864433 23468999999999987766543
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.29 E-value=9.8e-11 Score=123.89 Aligned_cols=266 Identities=17% Similarity=0.144 Sum_probs=144.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+|||+++.+++|..++....... ..+..+.|+|++|+|||+||+.+++.. ...+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 469999999999999886432211 335568899999999999999998742 2111 11111111111 1111112
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhC-------------------CCCCCcEEE
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLL-------------------GSAKGSKIL 304 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~ii 304 (846)
..+ +...+|++|+++.......+.+...+. ...+.+-|.
T Consensus 77 ~~~----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 77 TNL----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred Hhc----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 211 122355566554433322222322211 112244455
Q ss_pred EeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCC
Q 036168 305 VTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTD 384 (846)
Q Consensus 305 iTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 384 (846)
.||+...+....... ....+.+.+++.++..+++.+.+...+...+ .+.+..|++.|+|.|..+..++..+
T Consensus 135 ~t~~~~~l~~~l~sR-~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~----- 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRDR-FGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV----- 205 (305)
T ss_pred ecCCccccCHHHHhh-cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH-----
Confidence 667764433322111 1236799999999999999988854433222 3567899999999998776665543
Q ss_pred HHHHHHHHhhhhcccc-ccCCCchHHHHHhHhcCChhhHHHHh-HhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHH
Q 036168 385 EHYWEYVRDNEIWKLE-QKKNDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPE 462 (846)
Q Consensus 385 ~~~w~~~~~~~~~~~~-~~~~~v~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e 462 (846)
|..........+. ..-......+...|..++++.+..+. .++.+..+ .+....+.... | .+ .
T Consensus 206 ---~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~-~ 269 (305)
T TIGR00635 206 ---RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------ED-A 269 (305)
T ss_pred ---HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CC-c
Confidence 1111000000000 00011122245567888888888776 55666543 44544443222 1 11 2
Q ss_pred HHHHHHHH-HHHhcCCcccccC
Q 036168 463 NIGVRYLN-ELLSRSFFQDFTN 483 (846)
Q Consensus 463 ~~~~~~l~-~L~~~~ll~~~~~ 483 (846)
..++..++ .|++++||+....
T Consensus 270 ~~~~~~~e~~Li~~~li~~~~~ 291 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQRTPR 291 (305)
T ss_pred chHHHhhhHHHHHcCCcccCCc
Confidence 34556677 6999999975443
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.26 E-value=1.7e-10 Score=122.72 Aligned_cols=267 Identities=18% Similarity=0.163 Sum_probs=147.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-.+|+|+++.++.+..++....... .....+.|+|++|+||||+|+.+++... ..+ .++.. ........+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~-~~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSG-PALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEec-ccccChHHHHHH
Confidence 4679999999999988886432111 3356788999999999999999988432 111 11211 111111112222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCC-------------------CCCCcEE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLG-------------------SAKGSKI 303 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~i 303 (846)
+..+ ++.-+|++|+++.......+.+...+.. -.+.+-|
T Consensus 97 l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 97 LTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 2211 1234666776654332222323222211 0123445
Q ss_pred EEeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCC
Q 036168 304 LVTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGST 383 (846)
Q Consensus 304 iiTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 383 (846)
..|++...+....... ....+.+.+++.++..+++.+.+...+...+ .+.+..|++.|+|.|..+..+...+.
T Consensus 155 ~at~~~~~l~~~L~sR-f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~--- 227 (328)
T PRK00080 155 GATTRAGLLTSPLRDR-FGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR--- 227 (328)
T ss_pred eecCCcccCCHHHHHh-cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence 5566644333222111 1236899999999999999988865443322 36788999999999976665555432
Q ss_pred CHHHHHHHHhhhhcccc-ccCCCchHHHHHhHhcCChhhHHHHh-HhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCH
Q 036168 384 DEHYWEYVRDNEIWKLE-QKKNDILPALRLSYDQLPPHLKQCFA-YCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEP 461 (846)
Q Consensus 384 ~~~~w~~~~~~~~~~~~-~~~~~v~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~ 461 (846)
.|....... .+. ..-......+...+..|++..+..+. ....|+.+ .+..+.+...+ +.+
T Consensus 228 ---~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~- 289 (328)
T PRK00080 228 ---DFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEE- 289 (328)
T ss_pred ---HHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCC-
Confidence 122111000 000 00011223455667888888888886 66677665 45555554322 111
Q ss_pred HHHHHHHHH-HHHhcCCcccccC
Q 036168 462 ENIGVRYLN-ELLSRSFFQDFTN 483 (846)
Q Consensus 462 e~~~~~~l~-~L~~~~ll~~~~~ 483 (846)
.+.++..++ .|++.+||+....
T Consensus 290 ~~~~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 290 RDTIEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred cchHHHHhhHHHHHcCCcccCCc
Confidence 123444456 8999999975543
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=1.1e-09 Score=113.78 Aligned_cols=184 Identities=22% Similarity=0.223 Sum_probs=118.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh---
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL--- 267 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 267 (846)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..+...++... ...+.......+.+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~-~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLET-EGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999998753311 11 12233 3334567788888887775432 2233333333433322
Q ss_pred --cCceEEEEeeccCCCChhhHHHHHHhhCCC---CCCcEEEEeCCChHHHHHhCC-------CCCCCcEecCCCChHHH
Q 036168 268 --NGEIYLLVMDDVWNEDPKVWDELKSLLLGS---AKGSKILVTTRSNKVASIMGT-------MRGTAGYKLEGLPYESC 335 (846)
Q Consensus 268 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---~~gs~iiiTtR~~~~~~~~~~-------~~~~~~~~l~~l~~~~a 335 (846)
.+++.++|+||+|..+...++.+....... .....|++|.... ....... ......+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 678899999999988777777776543321 2223456665533 2222111 00123578999999999
Q ss_pred HHHHHHhhccCCCCCC-cchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 336 LSLFMKCAFKEGQHKH-PNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 336 ~~L~~~~a~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
.+++...+...+.... .-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887754432211 2234778999999999999999998776
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=5.8e-11 Score=120.84 Aligned_cols=198 Identities=21% Similarity=0.243 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH---
Q 036168 166 IIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI--- 242 (846)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 242 (846)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhhH-HHHHHHH
Confidence 799999999999998652 246899999999999999999988431 1122 344444433332221 1111
Q ss_pred -------HHHhc----CCCC------CCCCHHHHHHHHHHHh--cCceEEEEeeccCCCC------hhhHHHHHHhhCC-
Q 036168 243 -------IKSIT----GQNP------GDLDTDQLRRILRDRL--NGEIYLLVMDDVWNED------PKVWDELKSLLLG- 296 (846)
Q Consensus 243 -------~~~l~----~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~- 296 (846)
...+. .... ...........+.+.+ .+++++||+||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111 1110 0111122222333333 2345999999986543 2223334444433
Q ss_pred -CCCCcEEEEeCCChHHHHHh-C----CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch
Q 036168 297 -SAKGSKILVTTRSNKVASIM-G----TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL 370 (846)
Q Consensus 297 -~~~gs~iiiTtR~~~~~~~~-~----~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (846)
......+|+++......... . .......+.+++|+.+++++++...+... ..- +.-.+..++|+..+||+|.
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHH
Confidence 22333455555555444331 1 11123359999999999999999876333 111 2234556899999999999
Q ss_pred HHHH
Q 036168 371 AVRT 374 (846)
Q Consensus 371 ai~~ 374 (846)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.12 E-value=1.4e-08 Score=113.80 Aligned_cols=306 Identities=12% Similarity=0.098 Sum_probs=167.2
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh---hccCC--eeEEEEecCcccH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV---QEHFK--LKIWICVSEDFEQ 235 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~ 235 (846)
..|..+.||++++++|...|...-.+. ....++.|+|++|.|||++++.|.+.... ....+ .+++|++..-.+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 456789999999999999987654332 22357789999999999999999874321 11222 3567887777788
Q ss_pred HHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc---CceEEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEE--eCC
Q 036168 236 RQIMTKIIKSITGQNP-GDLDTDQLRRILRDRLN---GEIYLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILV--TTR 308 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iii--TtR 308 (846)
..++..|..++.+..+ ......+....+...+. ....+||||+++......-+.|...+.+ ...+++|+| +|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 8899999988854332 23344455555555542 2245999999965432222334444332 223555544 443
Q ss_pred ChHHH----HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCc-chHHHHHHHHHhhCCCchHHHHHhhhhcCCC
Q 036168 309 SNKVA----SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHP-NLVKIGEEIVKKCGGIPLAVRTLGSLLYGST 383 (846)
Q Consensus 309 ~~~~~----~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~-~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 383 (846)
..+.. ..+...-....+...|++.++-.+++..++.......++ .++-+|+.++...|-.-.||.++-.+.....
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 32211 112111112246779999999999999998543222223 2333444444444445566665544443211
Q ss_pred C----HHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCC---CcccChhHHHHHH--HHc--C-C
Q 036168 384 D----EHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPK---DYDFTSVLLIRFW--MAH--G-L 451 (846)
Q Consensus 384 ~----~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~---~~~~~~~~li~~w--~a~--g-~ 451 (846)
. .+.-..+... + ....+.-....||.+.|..+..+...-. ...++...+.... +++ | .
T Consensus 991 gskVT~eHVrkAlee----i------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQ----L------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHH----H------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 0 1111111100 0 0112334456788888877765443212 2235554444322 222 1 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcccc
Q 036168 452 LQSPNENEEPENIGVRYLNELLSRSFFQDF 481 (846)
Q Consensus 452 i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~ 481 (846)
+. .....+ ....++.+|...|+|-..
T Consensus 1061 iG---v~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1061 IG---MCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred cC---CCCcHH-HHHHHHHHHHhcCeEEec
Confidence 11 111223 567778888888877543
No 33
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=6.7e-10 Score=106.18 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=89.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhcc----CCeeEEEEecCcccHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEH----FKLKIWICVSEDFEQR---QIMTKIIKSITGQNPGDLDTDQLRRILR 264 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 264 (846)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+........ .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH-
Confidence 57899999999999999999875433322 3456677665544332 33333333332111 1111111111
Q ss_pred HHhcCceEEEEeeccCCCChh-------hHHH-HHHhhCC-CCCCcEEEEeCCChHHHHHhCCCCCCCcEecCCCChHHH
Q 036168 265 DRLNGEIYLLVMDDVWNEDPK-------VWDE-LKSLLLG-SAKGSKILVTTRSNKVASIMGTMRGTAGYKLEGLPYESC 335 (846)
Q Consensus 265 ~~l~~kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iiiTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a 335 (846)
..+.++++||+|++++.... .+.. +...+.. ..++.++|||+|................+.+.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12578999999999654321 1222 3334443 367899999999877643322222234799999999999
Q ss_pred HHHHHHhh
Q 036168 336 LSLFMKCA 343 (846)
Q Consensus 336 ~~L~~~~a 343 (846)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=2.6e-09 Score=125.87 Aligned_cols=321 Identities=15% Similarity=0.192 Sum_probs=186.6
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeE---EEEecCcc---cHHHH
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKI---WICVSEDF---EQRQI 238 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~---~~~~~ 238 (846)
.++||+.+++.|...+.....+ ...++.+.|..|||||+|+++|... +...+...+ +-...... ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g---~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKG---RGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCC---CeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 3799999999999999877654 3569999999999999999999874 322221111 11111221 12344
Q ss_pred HHHHHHHhcCCC------------------------------------CC-----CCCHHH-----HHHHHHHHh-cCce
Q 036168 239 MTKIIKSITGQN------------------------------------PG-----DLDTDQ-----LRRILRDRL-NGEI 271 (846)
Q Consensus 239 ~~~i~~~l~~~~------------------------------------~~-----~~~~~~-----~~~~l~~~l-~~kr 271 (846)
+++++.++.... +. ...... ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 444444431100 00 001111 112222233 4569
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCC----CcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccC
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAK----GSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKE 346 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~----gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~ 346 (846)
.++|+||+++.|....+-+......... ...|..+..... .............+.+.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999988887776665555443321 112333332222 22222233334589999999999999999877332
Q ss_pred CCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCC------CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChh
Q 036168 347 GQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGS------TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPH 420 (846)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~ 420 (846)
. ....+....|+++..|+|+.+..+-..+... .+...|+.-.. ........+.+.+.+....+.||..
T Consensus 236 ~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~--~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 K----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA--SLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred c----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH--hcCCchhhHHHHHHHHHHHhcCCHH
Confidence 2 2233667899999999999999999998763 23333432110 0111111223556788999999999
Q ss_pred hHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCccee-EEEEch
Q 036168 421 LKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIF-FFKMHD 499 (846)
Q Consensus 421 ~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~-~~~mH~ 499 (846)
.|+.+...||+...|+ ...|...+ .......+...++.|....++............... |-..|+
T Consensus 310 t~~Vl~~AA~iG~~F~--l~~La~l~-----------~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGNRFD--LDTLAALA-----------EDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCccCC--HHHHHHHH-----------hhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999987655 44444333 123445566666666655554322111111111111 236788
Q ss_pred HHHHHHHHhh
Q 036168 500 LMHDLAQLVA 509 (846)
Q Consensus 500 lv~~~~~~~~ 509 (846)
.+++.+-...
T Consensus 377 ~vqqaaY~~i 386 (849)
T COG3899 377 RVQQAAYNLI 386 (849)
T ss_pred HHHHHHhccC
Confidence 8888765443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.5e-11 Score=129.04 Aligned_cols=156 Identities=28% Similarity=0.408 Sum_probs=131.5
Q ss_pred HHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccC
Q 036168 569 LTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLV 648 (846)
Q Consensus 569 ~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 648 (846)
++..+..|-.|+.+.|..|.+..+|..++++..|.+|+|+.|. +..+|..++.|+ |+.|-+++|+ ++.+|..++.+.
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~ 166 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLP 166 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccch
Confidence 3444556677888889999999999999999999999999775 788888888886 8889888765 788899999999
Q ss_pred CCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEeccc
Q 036168 649 NLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLED 728 (846)
Q Consensus 649 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 728 (846)
+|.+|+.+.|.+..+|..++.+.+|+.|++..|. +..+|..+..| .|..|++++| ++..+|-.|.+|+.|++|-|.+
T Consensus 167 tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred hHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeecc
Confidence 9999999999999999999999999999998864 45677887755 4888999866 6788999999999999999998
Q ss_pred Cc
Q 036168 729 CE 730 (846)
Q Consensus 729 ~~ 730 (846)
|+
T Consensus 244 NP 245 (722)
T KOG0532|consen 244 NP 245 (722)
T ss_pred CC
Confidence 85
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.00 E-value=7.1e-09 Score=98.87 Aligned_cols=186 Identities=22% Similarity=0.231 Sum_probs=106.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-.+|||.+.-++.+.-++....... .....+.+||++|.||||||+-+++. ....|. +.+. ...+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg-~~i~-------- 87 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSG-PAIE-------- 87 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEEC-CC----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccc-hhhh--------
Confidence 3679999998888766654322111 44678899999999999999999984 333331 2221 1110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC--------CCCc-----------EE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS--------AKGS-----------KI 303 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs-----------~i 303 (846)
...++...+.. ++ ++-+|++|+++.....+.+.|.+.+.++ ++++ -|
T Consensus 88 ------------k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 88 ------------KAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ------------hHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11122222221 22 3458888999998888888888876543 2222 23
Q ss_pred EEeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcC
Q 036168 304 LVTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYG 381 (846)
Q Consensus 304 iiTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 381 (846)
=.|||...+........ .....+...+.+|-..+..+.+..-+. +-..+.+.+|+.++.|-|.-..-+-..+++
T Consensus 154 gATTr~g~ls~pLrdRF-gi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRF-GIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEESSGCCTSHCCCTTS-SEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeccccccchhHHhhc-ceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 35787654444333221 123579999999999999987744332 334578899999999999877777666653
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.99 E-value=6e-11 Score=119.29 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=103.0
Q ss_pred CCCCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCC-CChhhhhh-hhcc
Q 036168 521 QSIPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSD-SAIEVLSR-EIGN 598 (846)
Q Consensus 521 ~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~l~~-~~~~ 598 (846)
.++|...-.+.+..+.+.. -.+..|+.+++||.|.++.+.. ..+-+..|.+++.|..|-+-+ |.|+.+|. .|++
T Consensus 63 ~~LP~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNI---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCCCcceEEEeccCCccc-CChhhccchhhhceecccccch---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 3467777778887776542 2357789999999999986554 456678899999888777766 89998885 4888
Q ss_pred cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccc-cccccCCCcEEEecccc
Q 036168 599 LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPK-DIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 599 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~ 659 (846)
+..|+.|.+.-|...-.....|..+++|..|.+.+|. +..++. .+..+..++++.+..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 9999999998876555666778899999999998865 555555 67788888888876665
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.7e-11 Score=120.65 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred hhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChh---hhhhhhcccCccCeeeccCCCcccccch-h
Q 036168 544 SLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIE---VLSREIGNLKHLRYLDLSGHDKIKKLPN-S 619 (846)
Q Consensus 544 ~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~l~~~~~~l~~L~~L~L~~~~~~~~lp~-~ 619 (846)
.--.++++||.+.+.++....... ......|++++.|||+.|-+. .+-.-...+++|+.|+|+.|....-... .
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~--~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGI--EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHhhhHHhhhheeecCccccccch--hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 334566777777777554432211 134566778888888877654 3334455677888888877653321111 1
Q ss_pred hhcCCCCcEEecCCcCCCcc-ccccccccCCCcEEEecccc-cccccccCCCCCCCCEeccccccCcccc-hhhccCCCC
Q 036168 620 ICELHSLQTVCLGGCRELEE-LPKDIRYLVNLRMFVVSTKQ-KSLLESGIGCLSSLRFLMISDCENLEYL-FDDIDQLCV 696 (846)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~ 696 (846)
-..+++|+.|.|+.|..... +-..+..+|+|..|++..|. +.........+..|++|+|++|+.+... ....+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 12456777777777764321 22333556777777777663 2222223344566777777776654321 134566777
Q ss_pred cCEEEeecCCCCc-ccccc-----ccCCCCcCeEecccCc
Q 036168 697 LRTIFIADCPRLI-SLPPA-----VKYLSSLETLMLEDCE 730 (846)
Q Consensus 697 L~~L~l~~~~~~~-~l~~~-----~~~l~~L~~L~l~~~~ 730 (846)
|+.|+++.|..-. ..|+. ...+++|++|+++.|+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 7777777664321 12222 2345666666666664
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.9e-08 Score=102.69 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=107.2
Q ss_pred CccccchHHH---HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDR---EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
+++||.+.-+ .-|..++.. ..+..+.+||++|+||||||+.+... ....| ..++...+-..-++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHH
Confidence 3455555433 234444433 44667789999999999999999873 33333 23333333222233
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE--eCCChHHHHHhCC
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV--TTRSNKVASIMGT 318 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~~~~~~~~ 318 (846)
++++.. -+....+++.+|++|.|+..+..+-+.+.+.+. .|.-|+| ||-|+...-.-..
T Consensus 91 ~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH
Confidence 333221 112335889999999999887777666666554 4666666 6666643221111
Q ss_pred CCCCCcEecCCCChHHHHHHHHHhhccCCCCCC---c-chHHHHHHHHHhhCCCchHH
Q 036168 319 MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKH---P-NLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 319 ~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~---~-~~~~~~~~i~~~~~g~Plai 372 (846)
..+..++.+++|+.++-..++.+.+......-. . -..++...++..++|--.++
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 223458999999999999999984432222111 1 12346678899999877553
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.9e-11 Score=127.09 Aligned_cols=178 Identities=22% Similarity=0.308 Sum_probs=143.3
Q ss_pred hhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhh
Q 036168 542 FSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSIC 621 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~ 621 (846)
++.....+..|.++++..+.+ ..++.++.++..|.+|+|+.|.+..+|..++.|+ |+.|-+++| +++.+|..++
T Consensus 90 lp~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig 163 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIG 163 (722)
T ss_pred CchHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccc
Confidence 344445555666666653332 3456678899999999999999999999999876 999999955 6899999999
Q ss_pred cCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEE
Q 036168 622 ELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIF 701 (846)
Q Consensus 622 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 701 (846)
.+..|..|+.+.|. +..+|..++.+.+|+.|++..|.+..+|..+..| .|..|+++. +.+..+|-.|.+|..|++|-
T Consensus 164 ~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchhhhhhhhheeee
Confidence 99999999999876 7788999999999999999999999999888855 588999985 56778999999999999999
Q ss_pred eecCCCCcccccccc---CCCCcCeEecccC
Q 036168 702 IADCPRLISLPPAVK---YLSSLETLMLEDC 729 (846)
Q Consensus 702 l~~~~~~~~l~~~~~---~l~~L~~L~l~~~ 729 (846)
|.+|+ +.+-|..++ ...--++|+..-|
T Consensus 241 LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 241 LENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 99885 566666553 2233456777666
No 41
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.1e-07 Score=96.61 Aligned_cols=300 Identities=18% Similarity=0.170 Sum_probs=177.0
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
..|..+.+|+++++++...|...-.+ ..+.-+.|+|.+|+|||+.++.+++.......=..+++|++....++.+++.
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34556999999999999998776544 3344589999999999999999998533221111278999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhc--CceEEEEeeccCCCChhhHHHHHHhhCCCCC-CcE--EEEeCCChHHHHH
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLN--GEIYLLVMDDVWNEDPKVWDELKSLLLGSAK-GSK--ILVTTRSNKVASI 315 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~--iiiTtR~~~~~~~ 315 (846)
+|+..+...+.......+....+.+.+. ++.+++|||+++......-+.+...+..... .++ ||..+.+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997555556677777888887774 5789999999965322111444454443322 343 3444444433322
Q ss_pred h----CCCCCCCcEecCCCChHHHHHHHHHhhccC---CCCCCcchHHHHHHHHHhhCC-CchHHHHHhhhh--cCC---
Q 036168 316 M----GTMRGTAGYKLEGLPYESCLSLFMKCAFKE---GQHKHPNLVKIGEEIVKKCGG-IPLAVRTLGSLL--YGS--- 382 (846)
Q Consensus 316 ~----~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~---~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l--~~~--- 382 (846)
. ...-+...+..+|-+.++-.+++..++-.. +. .+++..+.+..++..-+| .-.|+..+-.+. +.+
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 2 222223457889999999999999887432 22 233344444444444444 444554443222 111
Q ss_pred --CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHH--HHHHcCCCCCCCCC
Q 036168 383 --TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIR--FWMAHGLLQSPNEN 458 (846)
Q Consensus 383 --~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~--~w~a~g~i~~~~~~ 458 (846)
-..+.-..... .--.....-....||.+.|..+...+..- ..+....+-. .++...+ .
T Consensus 251 ~~v~~~~v~~a~~----------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~------~ 312 (366)
T COG1474 251 RKVSEDHVREAQE----------EIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERL------R 312 (366)
T ss_pred CCcCHHHHHHHHH----------HhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh------C
Confidence 01111011100 00112344457888888887765554442 2333333321 2222211 1
Q ss_pred CCHHHHHHHHHHHHHhcCCccccc
Q 036168 459 EEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 459 ~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
. .+.....++++|...+++....
T Consensus 313 ~-~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 313 T-SQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred c-hHHHHHHHHHHHHhcCeEEeee
Confidence 1 3344567788888888887544
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.88 E-value=2.7e-08 Score=109.09 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=109.7
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREK---IIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
.++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++.. ... |+.++.......-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHH
Confidence 468898887666 7777754 335578889999999999999998742 222 222222211111122
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE--eCCChHHHHHhC
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRD-RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV--TTRSNKVASIMG 317 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~~~~~~~ 317 (846)
+++.. ... ...+++.+|++|+++.....+.+.+...+.. |..++| ||.+....-...
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22221 111 1245778999999988777677777776654 444444 344432211001
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
...+...+.+.+++.++...++.+.+........+-..+..+.|++.|+|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1112347999999999999999986533211100222466788999999999876555433
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=7.5e-08 Score=96.45 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=96.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
.+.+.|+|++|+|||+|++.+++.. ......+.|+++.... .... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-c
Confidence 3578999999999999999999853 2223345677653110 0000 1111122 2
Q ss_pred eEEEEeeccCCCC-hhhHH-HHHHhhCCC-CCCcEEEE-eCCC---------hHHHHHhCCCCCCCcEecCCCChHHHHH
Q 036168 271 IYLLVMDDVWNED-PKVWD-ELKSLLLGS-AKGSKILV-TTRS---------NKVASIMGTMRGTAGYKLEGLPYESCLS 337 (846)
Q Consensus 271 r~LlVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iii-TtR~---------~~~~~~~~~~~~~~~~~l~~l~~~~a~~ 337 (846)
.-+||+||+|... ...|+ .+...+... ..|..+|| |++. +++...+... ..+++++++.++.++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKII 168 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHHH
Confidence 2499999998642 33454 344444322 23555544 5543 3444444433 378999999999999
Q ss_pred HHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 338 LFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 338 L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
++.+.++..+...+ .++..-|++++.|..-.+..+-..+
T Consensus 169 iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999875543322 3677899999998887776665444
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.2e-10 Score=112.53 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=141.4
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhh--hcccCcc
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSRE--IGNLKHL 602 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~--~~~l~~L 602 (846)
+++|.+++..............+.|++++.|.++.+-. ............+|+|+.|+|+.|.+.....+ -..+++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~-~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF-HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhH-HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 35777777766554322225678899999999884332 23444556778999999999999987633322 2357899
Q ss_pred CeeeccCCCccc-ccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccc--ccCCCCCCCCEeccc
Q 036168 603 RYLDLSGHDKIK-KLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE--SGIGCLSSLRFLMIS 679 (846)
Q Consensus 603 ~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 679 (846)
+.|.|++|.... .+...+..+|+|+.|.|..|..+..-......+..|+.|+|++|.+...+ ...+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999997542 34444567899999999998644433344566788999999999988666 457889999999999
Q ss_pred cccCccc-chhh-----ccCCCCcCEEEeecCCC--CccccccccCCCCcCeEecccC
Q 036168 680 DCENLEY-LFDD-----IDQLCVLRTIFIADCPR--LISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 680 ~~~~~~~-~~~~-----l~~l~~L~~L~l~~~~~--~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
.|...+. .|+. ...+++|++|++..|+. ..++ ..+..+++|+.|.+..|
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLN 336 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcccccccc-chhhccchhhhhhcccc
Confidence 8764331 2222 35689999999999865 2222 22455667777776554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=2.9e-09 Score=125.00 Aligned_cols=130 Identities=28% Similarity=0.358 Sum_probs=93.2
Q ss_pred cCCceeEEEeCCCC--hhhhhhh-hcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCc
Q 036168 575 KSQFLRVIDLSDSA--IEVLSRE-IGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLR 651 (846)
Q Consensus 575 ~~~~L~~L~L~~~~--~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 651 (846)
.++.|+.|-+..|. +..++.. |..+++|++|||++|.....+|..++.|-+|++|+++++. +..+|..+.+|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 45578888888775 5555443 6678888888888888888888888888888888888754 778888888888888
Q ss_pred EEEecccccc-cccccCCCCCCCCEecccccc--CcccchhhccCCCCcCEEEeecC
Q 036168 652 MFVVSTKQKS-LLESGIGCLSSLRFLMISDCE--NLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 652 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
+|++..+... .+|.....+++|++|.+.... ........+.++.+|+.|.+..+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 8888876654 334444558888888876643 11223344566677777766544
No 46
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.5e-07 Score=91.58 Aligned_cols=270 Identities=19% Similarity=0.198 Sum_probs=153.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+|||.+.-.+++.=.+..+.... ...-.+.++|++|.||||||.-+++. ....+. ++......
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----eccccccc---------
Confidence 579999999988887776554332 56789999999999999999999884 332221 11111111
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCC--------CCCCcEEE-----------
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLG--------SAKGSKIL----------- 304 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~ii----------- 304 (846)
...++...+.. |+ +.=+|++|.++.......+.+.+.+.+ .++++|.|
T Consensus 90 -----------K~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 90 -----------KPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred -----------ChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 11222222221 22 223677899988777666666666543 24555544
Q ss_pred EeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCC
Q 036168 305 VTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTD 384 (846)
Q Consensus 305 iTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 384 (846)
.|||...+........ ..+..+.-.+.+|-.++..+.+..-+... ..+.+.+|+++..|-|.-..-+-+.++.
T Consensus 157 ATTr~G~lt~PLrdRF-Gi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRVRD--- 229 (332)
T COG2255 157 ATTRAGMLTNPLRDRF-GIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRVRD--- 229 (332)
T ss_pred eccccccccchhHHhc-CCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHHHH---
Confidence 6888755443332221 23678888999999999998884443332 2367899999999999877666555542
Q ss_pred HHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHHHH
Q 036168 385 EHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPENI 464 (846)
Q Consensus 385 ~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e~~ 464 (846)
+..+.....-.. ...+.....|.+--..|+...+..+..+.-.+.|-.+..+.+... .|- ...+.|++
T Consensus 230 ---fa~V~~~~~I~~-~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~---lge-----~~~TiEdv 297 (332)
T COG2255 230 ---FAQVKGDGDIDR-DIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAA---LGE-----DRDTIEDV 297 (332)
T ss_pred ---HHHHhcCCcccH-HHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHH---hcC-----chhHHHHH
Confidence 122211100000 000112222333334455556666655554444445555544321 110 12233343
Q ss_pred HHHHHHHHHhcCCcccccCC
Q 036168 465 GVRYLNELLSRSFFQDFTNG 484 (846)
Q Consensus 465 ~~~~l~~L~~~~ll~~~~~~ 484 (846)
-+ -.|+..+|++....+
T Consensus 298 ~E---PyLiq~gfi~RTpRG 314 (332)
T COG2255 298 IE---PYLIQQGFIQRTPRG 314 (332)
T ss_pred Hh---HHHHHhchhhhCCCc
Confidence 33 347888999877654
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=2.9e-09 Score=117.40 Aligned_cols=153 Identities=31% Similarity=0.378 Sum_probs=123.4
Q ss_pred ccCCceeEEEeCCCChhhhhhhhcccC-ccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 574 SKSQFLRVIDLSDSAIEVLSREIGNLK-HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
..++.+..|++.++.+..++.....+. +|+.|++++|. +..+|..+..+++|+.|++++|. +..+|.....+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 345789999999999999888888775 99999999765 77777778899999999999876 6777777678899999
Q ss_pred EEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 653 FVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 653 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
|++++|.+..+|..+..+..|++|.+++|. ....+..+..+.++..|.+.+|. +..++..+..+++|++|++++|.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccccccceecccccc
Confidence 999999999888777777779999998865 33455677888888888877664 44556778888889999998874
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.3e-07 Score=99.84 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-...+... .+.......++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 56899999999999988653 234567899999999999999998742111111000 0000000000000000
Q ss_pred HHhcC-CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhC
Q 036168 244 KSITG-QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMG 317 (846)
Q Consensus 244 ~~l~~-~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~ 317 (846)
-.+.. ........++..+.+... ..+++-++|+|+++......++.+...+.......++|++|.+.. +.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 00000 000001222222221111 123456999999988777778888888877666777777776543 332222
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
. +...+++.+++.++..+.+...+...+... ..+.+..|++.++|.|..+...
T Consensus 168 S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 168 S--RCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred h--hceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 234799999999999998888775443222 2356788999999988654433
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=1.8e-09 Score=107.52 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=44.0
Q ss_pred ccCCCcEEEecccccccc-----cccCCCCCCCCEeccccccCcc----cchhhccCCCCcCEEEeecCCCCc----ccc
Q 036168 646 YLVNLRMFVVSTKQKSLL-----ESGIGCLSSLRFLMISDCENLE----YLFDDIDQLCVLRTIFIADCPRLI----SLP 712 (846)
Q Consensus 646 ~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~l~ 712 (846)
+-++|+.+...+|.+..- -..+...+.|+.+.+..|..-. .+...+..+++|+.|+|.+|.... .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345566666666655421 1234445566666665543321 223445666666666666664321 233
Q ss_pred ccccCCCCcCeEecccC
Q 036168 713 PAVKYLSSLETLMLEDC 729 (846)
Q Consensus 713 ~~~~~l~~L~~L~l~~~ 729 (846)
..+..+++|+.|++++|
T Consensus 235 kaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhcccchheeeccccc
Confidence 34455566666666666
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.3e-09 Score=105.53 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=35.6
Q ss_pred cCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEec
Q 036168 647 LVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLML 726 (846)
Q Consensus 647 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 726 (846)
+..|..||+++|.++.+..+..-++.++.|+++.|.... ...+..+++|+.|++++| .+..+..+-..+.+.++|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 344555555555555444444444555555555443322 122444455555555544 23333333333444444444
Q ss_pred ccC
Q 036168 727 EDC 729 (846)
Q Consensus 727 ~~~ 729 (846)
++|
T Consensus 360 a~N 362 (490)
T KOG1259|consen 360 AQN 362 (490)
T ss_pred hhh
Confidence 444
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=3.7e-07 Score=102.29 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=118.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
+++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...-...+.. ..+..+.+ .+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~s----Cr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRA----CREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHH----HHHHh
Confidence 56899999999999998653 22456679999999999999988764211111100 00000000 11110
Q ss_pred HH----h-cCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HH
Q 036168 244 KS----I-TGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VA 313 (846)
Q Consensus 244 ~~----l-~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~ 313 (846)
.. + .-........+++.+.+... ..++.-++|||+++......+..|...+.......++|+||++.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 0 00000111233333333221 124455899999998888888888888877666788888887653 22
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHHh
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTLG 376 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 376 (846)
..+. .+...+.++.++.++..+.+.+.+...+... ..+....|++.++|... |+..+-
T Consensus 164 ~TIr--SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 164 VTVL--SRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred chhh--hheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2211 1234799999999999999988775443322 23667899999999664 555433
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.77 E-value=2.6e-08 Score=90.74 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=83.9
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhc---cCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQE---HFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR 266 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 266 (846)
+.+++.|+|.+|+|||++++.+.+...... .-..++|+.+....+...+...++..+........+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999998532110 12456799998888999999999999976655556777777888887
Q ss_pred hcCce-EEEEeeccCCC-ChhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 267 LNGEI-YLLVMDDVWNE-DPKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 267 l~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
+...+ .+||+|+++.. +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76544 59999999776 6666666666555 556678777664
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.77 E-value=1.5e-07 Score=95.00 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG 248 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 248 (846)
.+..++++..++.. .....+.|+|++|+|||+||+.+++.. .......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 45567777777543 335689999999999999999998742 22233455665432211 00
Q ss_pred CCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChh-h-HHHHHHhhCC-CCCCcEEEEeCCChHH---------HHHh
Q 036168 249 QNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPK-V-WDELKSLLLG-SAKGSKILVTTRSNKV---------ASIM 316 (846)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~iiiTtR~~~~---------~~~~ 316 (846)
. .+...+.+ .-+||+||++..... . .+.+...+.. ...+..+|+||+.... ....
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 01111222 238999999765432 2 3445544432 1233478888885321 1111
Q ss_pred CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 317 GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 317 ~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
.. ...+.+.+++.++...++...+...+... -.+..+.+++.+.|+|..+..+...+
T Consensus 149 ~~---~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AW---GLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hc---CeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 23689999999999999987653333222 23566888889999998887765443
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.76 E-value=3.6e-07 Score=102.38 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=141.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.++.++++.+|+.....+ ...+.+.|+|++|+||||+|+.+++.. .|+ .+-++.+..... ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHH
Confidence 56899999999999998764322 226789999999999999999998843 233 333344433222 2233333
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh----hhHHHHHHhhCCCCCCcEEEEeCCChH-HHH-HhC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP----KVWDELKSLLLGSAKGSKILVTTRSNK-VAS-IMG 317 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~-~~~ 317 (846)
....... .....++-+||+|+++.... .....+...+... +..||+|+.+.. ... ...
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh
Confidence 2221110 00113567999999976432 3455666666532 344666665432 111 111
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCC---CHHHHHHHHhh
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGST---DEHYWEYVRDN 394 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~---~~~~w~~~~~~ 394 (846)
.....+.+.+++.++....+...+...+...+ .++...|++.++|....+......+.... +.+.-+.+..
T Consensus 150 --sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 150 --NACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred --ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 12347899999999999988887755444322 36678999999998876655444443321 1222221111
Q ss_pred hhccccccCCCchHHHHHhHh-cCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCC
Q 036168 395 EIWKLEQKKNDILPALRLSYD-QLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQS 454 (846)
Q Consensus 395 ~~~~~~~~~~~v~~~l~~sy~-~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~ 454 (846)
......++.++..-+. .-.......+.. ..++. ..+-.|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1223456666665554 222222222221 12233 34668999988754
No 55
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=5.5e-09 Score=97.93 Aligned_cols=102 Identities=28% Similarity=0.432 Sum_probs=25.2
Q ss_pred CCceeEEEeCCCChhhhhhhhc-ccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccc-cccCCCcEE
Q 036168 576 SQFLRVIDLSDSAIEVLSREIG-NLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDI-RYLVNLRMF 653 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L 653 (846)
+..++.|+|++|.|..+. .++ .+.+|+.|+|++|. ++.++. +..+++|++|++++|. ++.++..+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 334566666666666553 344 35666666666553 444443 5556666666666655 33443333 346666666
Q ss_pred Eeccccccccc--ccCCCCCCCCEeccccc
Q 036168 654 VVSTKQKSLLE--SGIGCLSSLRFLMISDC 681 (846)
Q Consensus 654 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 681 (846)
++++|.+..+. ..++.+++|+.|++.+|
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 66666554321 12334444444444444
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.3e-07 Score=105.99 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=117.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhcc-------------------CCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEH-------------------FKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 224 (846)
.++||.+..++.|.+++... .-...+.++|+.|+||||+|+.+++...-... |..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 56899999999999998653 22345689999999999999999874211111 1111
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHH---HHH-HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRI---LRD-RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
+++.... ....+.+.+. +.. -..+++-++|+|+++.........|+..+......
T Consensus 91 iEidAas---------------------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 91 IEVDAAS---------------------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred EEecccc---------------------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 1111110 1112222211 111 12466779999999988888888898888776667
Q ss_pred cEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 301 SKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 301 s~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.++|++|.+. .+...+.. +...|.+++++.++...++.+.+...+.. ...+.+..|++.++|.|.-+..+
T Consensus 150 vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7777766553 33322221 23479999999999999998876443222 22366789999999988655444
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.74 E-value=2.8e-07 Score=99.26 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccH-HHHHH-
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQ-RQIMT- 240 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~- 240 (846)
.+++|++..++.+..++.. ...+.+.++|++|+||||+|+.+.+... ...+. ..++++++.-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 5689999999999998854 2234678999999999999999987422 11121 2334443321100 00000
Q ss_pred --HHHHHhcCC-CCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-
Q 036168 241 --KIIKSITGQ-NPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK- 311 (846)
Q Consensus 241 --~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~- 311 (846)
.....+... .......+.....++... .+.+-+||+||++.........+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 000011122222222211 13345899999976665556667776665555677888875432
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+...... +...+.+.+++.++...++...+...+... ..+.++.+++.++|.+-.+...
T Consensus 168 ~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2222211 234688899999999999988775444332 2367788999999987665443
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=8e-09 Score=113.87 Aligned_cols=146 Identities=27% Similarity=0.342 Sum_probs=105.4
Q ss_pred EEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCC-CCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 581 VIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELH-SLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 581 ~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
.++++.+.+......+..++.++.|++.+| .+..+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 567777776444445566678888888865 4777777777774 88888888865 66676777888888888888888
Q ss_pred cccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 660 KSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 660 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
+..+|...+.+++|+.|++++| .+..+|..+..+..|+.|.+++|. ....+..+..+.++..|.+.+|.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce
Confidence 8888776667888888888875 455666666666668888888774 33445556677777777766653
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.2e-07 Score=101.69 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=118.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.++||.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-.. ++... .+..=...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHh
Confidence 56899999999999999753 2246778999999999999999986421110 10000 000000001110
Q ss_pred HHhc-----CCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HH
Q 036168 244 KSIT-----GQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VA 313 (846)
Q Consensus 244 ~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~ 313 (846)
..-. -........+++.+.+... ..++.-++|+|+++.........+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 0000011233333222211 235666999999998887788888888877666778888776643 22
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.... .+...+.+++++.++..+.+.+.+...+... ..+....|++.++|.+..+..+
T Consensus 163 ~TIl--SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVI--SRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHH--HhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1111 1234799999999999999988775544332 2356788999999988555433
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=4.9e-08 Score=108.17 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=118.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|..++... .-...+.++|++|+||||+|+.+++...-.+.+...+|.|.+.. ........-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 46899999999999888653 23456799999999999999999875322222222223221110 0000000000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMG 317 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~ 317 (846)
..+.. ......+.+.+ +.+.+ .+++-++|+|+++......+..+...+....+.+.+|++|... .+...+.
T Consensus 88 ~el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000 01112222222 22222 3456689999998877777888888887765566666666543 3322222
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
. +...+.+.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+.
T Consensus 165 S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 165 S--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred c--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2 2347999999999999999988765543322 3667899999999996553
No 61
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.73 E-value=3.9e-08 Score=95.82 Aligned_cols=51 Identities=24% Similarity=0.449 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ 218 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~ 218 (846)
.|+||+++++++...+.... . ...+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~-~--~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ-S--GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS-S-------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-c--CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999996222 2 456899999999999999999998854433
No 62
>PTZ00202 tuzin; Provisional
Probab=98.72 E-value=6.5e-07 Score=93.35 Aligned_cols=172 Identities=11% Similarity=0.191 Sum_probs=110.3
Q ss_pred ccCccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 158 HSFVLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 158 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
..|.+...|+||++++.+|...|...+. ..++++.|+|++|+|||||++.+..... + ..++.-.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH
Confidence 4456678999999999999999975433 2356999999999999999999986322 2 23332222 6799
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHh------cCceEEEEeeccCCCC-hhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRL------NGEIYLLVMDDVWNED-PKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
+++.++.+++.. ......++.+.|.+.+ ++++.+||+-==...+ ...+.+... |.....-|+|++----+
T Consensus 325 lLr~LL~ALGV~--p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVP--NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHh
Confidence 999999999752 2223344545554433 2677777775221111 122333222 33334457788766555
Q ss_pred HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 311 KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+.......++-..|.+++++.++|.++..+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 443333333334579999999999998877654
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.72 E-value=1.2e-09 Score=111.01 Aligned_cols=280 Identities=20% Similarity=0.224 Sum_probs=168.7
Q ss_pred hhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCC-hh--hhhhhhcccCccCeeeccCCCcccc--cch
Q 036168 544 SLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSA-IE--VLSREIGNLKHLRYLDLSGHDKIKK--LPN 618 (846)
Q Consensus 544 ~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~l~~~~~~l~~L~~L~L~~~~~~~~--lp~ 618 (846)
....+++++..|.+..+. ...+......-..|++|+.|+|..|. ++ .+-.-...|++|+||++++|..+.. +..
T Consensus 158 t~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred HHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH
Confidence 344566666666555433 34455566667789999999998854 44 2222345689999999999876653 333
Q ss_pred hhhcCCCCcEEecCCcCCCcc--ccccccccCCCcEEEecccccc-c--ccccCCCCCCCCEeccccccCcccch--hhc
Q 036168 619 SICELHSLQTVCLGGCRELEE--LPKDIRYLVNLRMFVVSTKQKS-L--LESGIGCLSSLRFLMISDCENLEYLF--DDI 691 (846)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~-~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l 691 (846)
...++.+|+.+.+.+|..... +-..-..+.-+..+++..|... . +...-..+..||.|+.++|......+ .-.
T Consensus 237 ~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 237 LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 455677788887777764332 1111134444555555454322 1 11122456788888888887765432 223
Q ss_pred cCCCCcCEEEeecCCCCcccc--ccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCC
Q 036168 692 DQLCVLRTIFIADCPRLISLP--PAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLE 769 (846)
Q Consensus 692 ~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~ 769 (846)
.+.++|+.|.+..|..++..- ..-.+++.|+.|++..|...... .+.........|+.+.++.|..+++
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---------tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---------TLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh---------hHhhhccCCchhccCChhhhhhhhh
Confidence 467888888888887654321 11246778888888887543311 1112223345677777776665543
Q ss_pred C-----chhhhcCCCCccceeeccccccccc-CCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeC
Q 036168 770 L-----PQWLLQGSTKTLKTLIIRNCPNFMA-LPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLE 841 (846)
Q Consensus 770 l-----~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~ 841 (846)
. .... ..+..|..|.|++|+.+.. .-..+..+++|+.+++.+|..++..... +..+|+|++++.
T Consensus 388 ~gi~~l~~~~--c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 388 EGIRHLSSSS--CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS------RFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhcc--ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH------HHHhhCccceeh
Confidence 3 1111 4567888899999987652 2334677889999999998876643221 124466766653
No 64
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=6.3e-09 Score=97.54 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=49.4
Q ss_pred CCCChhhhhhhhcccCccCeeeccCCCcccccchhhh-cCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccc
Q 036168 585 SDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSIC-ELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLL 663 (846)
Q Consensus 585 ~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 663 (846)
..+.+...+. +.++.+++.|+|++|. +..+. .++ .+.+|+.|++++|. ++.++ .+..+++|+.|++++|.++.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccc-cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCcc
Confidence 3344444443 4556688999999875 55554 355 57899999999877 55554 577889999999999999877
Q ss_pred cccC-CCCCCCCEeccccccCc--ccchhhccCCCCcCEEEeecCCCCcc---ccccccCCCCcCeEecccC
Q 036168 664 ESGI-GCLSSLRFLMISDCENL--EYLFDDIDQLCVLRTIFIADCPRLIS---LPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 664 ~~~~-~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~~ 729 (846)
...+ ..+++|++|++++|..- .. ...+..+++|+.|++.+|+.... -...+..+|+|+.||-...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 5444 46889999999887542 22 24567889999999998875332 1123567788888886543
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3.2e-07 Score=98.94 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=117.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..+..|..++... .-...+.++|+.|+||||+|+.+++..--..... ...+..+.+...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 56899999999999998753 2234678999999999999999987421110000 001111111111111110
Q ss_pred HHhcCCCC-CCCCHHHHH---HHHHH-HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHHHHHhC
Q 036168 244 KSITGQNP-GDLDTDQLR---RILRD-RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKVASIMG 317 (846)
Q Consensus 244 ~~l~~~~~-~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~~~~~~ 317 (846)
..+..-.. .....+.+. +.+.. ...++.-++|+|+++......+..|...+........+|++|.+ ..+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00000000 111222222 22221 12456679999999988888888888888665555555555544 33433322
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
. +...|.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..
T Consensus 170 S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 170 S--RCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred h--hhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHHHH
Confidence 2 234699999999999999888775444322 236678999999999854433
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=7.6e-07 Score=98.86 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=115.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh-------------------ccCCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ-------------------EHFKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 224 (846)
.+++|.+..++.|...+... .....+.++|+.|+||||+|+.+++...-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999988653 234567899999999999999998632110 112222
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEE
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRD-RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKI 303 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 303 (846)
+++........++ ..++.+.+.. -..+++-++|+|+++......++.|...+......+.+
T Consensus 91 ieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 2222211111111 1112222211 12356679999999888878888899888876666766
Q ss_pred EEeCCC-hHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHH
Q 036168 304 LVTTRS-NKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTL 375 (846)
Q Consensus 304 iiTtR~-~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 375 (846)
|++|.+ ..+...+. .+...+++.+++.++....+.+.+...+.. ........|++.++|.+. |+..+
T Consensus 153 IL~Ttd~~kil~tI~--SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTIL--SRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHH--HheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655544 33332221 123479999999999988888766443322 223566789999999774 44444
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=6.9e-07 Score=94.43 Aligned_cols=181 Identities=16% Similarity=0.206 Sum_probs=118.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch----hhhccCCeeEEEEe-cCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ----SVQEHFKLKIWICV-SEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 238 (846)
.+++|.+..++.+...+... .-.+...++|+.|+||||+|+.+++.. ....|.|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 45789899899999998653 335677899999999999999988632 12345555445432 22222222
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHH-HHhC
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVA-SIMG 317 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~-~~~~ 317 (846)
++++.+.+... -..+++=++|+|+++......+..+...+...++++.+|++|.+.+.. ..+.
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22232222111 112455678888887777788999999999888899999888765422 1111
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+ +...+.+.++++++....+.+... ..+ .+.++.++..++|.|..+...
T Consensus 142 S--Rc~~~~~~~~~~~~~~~~l~~~~~----~~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 S--RCQIYKLNRLSKEEIEKFISYKYN----DIK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred h--hceeeeCCCcCHHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 234789999999999888876541 111 244678899999998765433
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=6.7e-07 Score=98.95 Aligned_cols=197 Identities=15% Similarity=0.180 Sum_probs=118.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---cCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---HFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~ 240 (846)
.++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...-.. ... ...-.+..+ ...+
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~~~PCG~C----~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-ITAQPCGQC----RACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CCCCCCccc----HHHH
Confidence 56899999999999999753 2345678999999999999999886421100 000 000000000 0011
Q ss_pred HHHHH-----hcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-h
Q 036168 241 KIIKS-----ITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-N 310 (846)
Q Consensus 241 ~i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~ 310 (846)
.|... +.-........+++.+.+... ..++.-++|+|+++......+..|...+.......++|++|.+ .
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11000 000000112334443333321 1355669999999988888888888888776666676665554 4
Q ss_pred HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 311 KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+...+.+ +...+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|.-...+
T Consensus 166 kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 44333222 234799999999999998887764433222 2355678999999999755443
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.3e-06 Score=96.46 Aligned_cols=196 Identities=15% Similarity=0.200 Sum_probs=118.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCe-eEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKL-KIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 242 (846)
.+++|.+..+..|...+... .-.+.+.++|+.|+||||+|+.+++..--...... ..+..+..+.. ...+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHH
Confidence 56899999999998887653 23467889999999999999999874211111000 00000111100 0111
Q ss_pred HHHhc-----CCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE-eCCChHH
Q 036168 243 IKSIT-----GQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV-TTRSNKV 312 (846)
Q Consensus 243 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii-TtR~~~~ 312 (846)
..... -........+++.+.+... +.+++-++|+|+++......+..|...+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10000 0001112333333333221 235667899999998888888899888887666666665 4444444
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
...... +...+.+.+++.++....+...+...+...+ .+....|++.++|.+.-+.
T Consensus 172 ~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 172 PATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred hHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 443322 2347899999999999999988865443322 3566789999999875543
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.64 E-value=1.3e-06 Score=93.32 Aligned_cols=184 Identities=15% Similarity=0.190 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe--cCcccHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV--SEDFEQRQIMTK 241 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 241 (846)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45899999999999998642 234579999999999999999987421 11121 112222 2211111 1111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTMR 320 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~~ 320 (846)
.+..+....+ .....+-++++|+++.........+...+....+.+.+|+++.... +......
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s-- 151 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS-- 151 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH--
Confidence 1111110000 0012346899999976665566677777766556677877775321 1111111
Q ss_pred CCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 321 GTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+...+.+.+++.++....+...+...+...+ .+.+..+++.++|.+.-+...
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1236899999999999999888755443322 356788999999988764433
No 71
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.60 E-value=7e-06 Score=94.02 Aligned_cols=203 Identities=21% Similarity=0.235 Sum_probs=119.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC---CeeEEEEecCc---ccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF---KLKIWICVSED---FEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 237 (846)
++++|++..+..+...+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999988887743 234579999999999999999998754332222 12234444321 12222
Q ss_pred HHHHH---------------HHHhcC------------------CCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh
Q 036168 238 IMTKI---------------IKSITG------------------QNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP 284 (846)
Q Consensus 238 ~~~~i---------------~~~l~~------------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 284 (846)
+...+ +...+. .+....+ ...+..+.+.+.++++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 111110 0111122 2346677777888888888777777776
Q ss_pred hhHHHHHHhhCCCCCCcEEEE--eCCChHH-HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHH
Q 036168 285 KVWDELKSLLLGSAKGSKILV--TTRSNKV-ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEI 361 (846)
Q Consensus 285 ~~~~~l~~~l~~~~~gs~iii--TtR~~~~-~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i 361 (846)
..|+.+...+....+...|++ ||++... ...... +...+.+.+++.++.++++.+.+...+.... .++.+.|
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L 381 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELI 381 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 778777776666555555555 5664431 111111 1236788999999999999987743322111 2445566
Q ss_pred HHhhCCCchHHHHHhhh
Q 036168 362 VKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 362 ~~~~~g~Plai~~~~~~ 378 (846)
.+.+..-+.++..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 66655445666655544
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.60 E-value=4.9e-07 Score=84.35 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=73.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 167 IGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
+|++..++.+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 246889999999999999999998532 112335566554433222111111000
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC------CCCcEEEEeCCChH
Q 036168 247 TGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS------AKGSKILVTTRSNK 311 (846)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iiiTtR~~~ 311 (846)
............++.++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999764333333444433332 35778888888653
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=2.2e-06 Score=90.81 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCe-eEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKL-KIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 242 (846)
.+++|.++.++.|..++... ....+.++|++|+||||+|+.+++... ...|.. ++-++.+...... .++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46789999888888877542 234577999999999999999987421 112221 1112222221211 22222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCCC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMRG 321 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~ 321 (846)
+......... .-.++.-++|+|+++.........+...+......+++|+++... .+...... +
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--R 149 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--R 149 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--h
Confidence 2211100000 002345699999998777666666777666555567777777543 22111111 1
Q ss_pred CCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 322 TAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 322 ~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
...+++++++.++....+...+...+...+ .+....|++.++|....+...
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 237899999999999999888755544322 256789999999987554433
No 74
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.60 E-value=5.7e-07 Score=90.03 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=108.6
Q ss_pred ccccchHHHH---HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 165 EIIGRDEDRE---KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 165 ~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
++||.+..+. -|.+++.+ .....+.+||++|.||||||+.+........ ..||..+....-..-.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq------~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQ------NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRD 208 (554)
T ss_pred HhcchhhhcCcchHHHHHHHc------CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHH
Confidence 4566554332 23444433 4567788999999999999999987532221 457777666555555555
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE--eCCChHHHHHhCCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV--TTRSNKVASIMGTM 319 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~~~~~~~~~ 319 (846)
|+++-.. ...+.++|.+|++|.|+.....+-+.+ +|.-..|.-++| ||-++...-.....
T Consensus 209 ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHH
Confidence 5554311 113467889999999987655444433 444455776665 77776543221222
Q ss_pred CCCCcEecCCCChHHHHHHHHHhhcc---CCCC--CCcc-----hHHHHHHHHHhhCCCchH
Q 036168 320 RGTAGYKLEGLPYESCLSLFMKCAFK---EGQH--KHPN-----LVKIGEEIVKKCGGIPLA 371 (846)
Q Consensus 320 ~~~~~~~l~~l~~~~a~~L~~~~a~~---~~~~--~~~~-----~~~~~~~i~~~~~g~Pla 371 (846)
.+..++.++.|..++...++.+.... .... .-|+ ...+.+-++..|+|...+
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 23458999999999998888874321 1110 1111 224566777888887643
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=8.9e-07 Score=102.11 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=102.5
Q ss_pred CccccchHHHH---HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDRE---KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
++|+|.+..+. .+...+.. .....+.|+|++|+||||+|+.+++. ...+|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 56899988774 45555543 33456789999999999999999974 333331 111110 0000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE--eCCChH--HHH
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRL--NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV--TTRSNK--VAS 314 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii--TtR~~~--~~~ 314 (846)
+..+......+.+ .+++.+|||||++......++.+...+.. |+.++| ||.++. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhh
Confidence 0111111121111 24567999999987776667777665543 555555 344432 222
Q ss_pred HhCCCCCCCcEecCCCChHHHHHHHHHhhccC----CCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 315 IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKE----GQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 315 ~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~----~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
.... +...+.+++++.++...++.+.+... +.....-..+....|++.+.|....+..
T Consensus 155 aL~S--R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 155 ALVS--RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred Hhhc--cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 1111 23479999999999999998876410 0111112235668889999887654433
No 76
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=7.4e-09 Score=100.49 Aligned_cols=128 Identities=30% Similarity=0.289 Sum_probs=91.6
Q ss_pred cCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 575 KSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
....|+.|||++|.|+.+..++.-.+.++.|+++.|. +..+.. +..+++|+.|||++|. +..+-..-.++-|++.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 3456888889998888888888888888899888875 444443 7778888888888865 444444445677788888
Q ss_pred ecccccccccccCCCCCCCCEeccccccCcccc--hhhccCCCCcCEEEeecCCC
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYL--FDDIDQLCVLRTIFIADCPR 707 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~ 707 (846)
++.|.+..+ ++++.+-+|..|++.+|+. +.+ ...++++|.|+.|.+.+|+.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCc
Confidence 888877766 4677777888888887643 222 24567777777777777653
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.9e-06 Score=94.38 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=117.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchh------------------hh-ccCCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQS------------------VQ-EHFKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~f~~~ 224 (846)
.++||.+..++.|.+.+... .-.+.+.++|+.|+||||+|+.+++..- +. +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 56899999999998888653 2245788999999999999998875210 00 111123
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEE
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKIL 304 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 304 (846)
+.++.+.....++ .+++++..... -..++.-++|+|+++.........|...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333322222222 11222211100 012455689999998887777888888888777777777
Q ss_pred EeCCC-hHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 305 VTTRS-NKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 305 iTtR~-~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
++|.+ ..+...+.. +...+.+.+++.++..+.+...+...+...+ .+.+..|++.++|.+..+.
T Consensus 151 latte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 151 LATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 66644 344333322 2347899999999999999988765443322 3567889999999886443
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.1e-06 Score=99.15 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=118.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.++||.+..++.|...+... .-...+.++|+.|+||||+|+.+++..--...+.. -.+..+ ...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 56899999999999988653 22345789999999999999999874211111100 001111 1111111
Q ss_pred HHhc-----CCCCCCCCHHHHHHHHHH----HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHH
Q 036168 244 KSIT-----GQNPGDLDTDQLRRILRD----RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVA 313 (846)
Q Consensus 244 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~ 313 (846)
..-. -........+++.+.+.. -..+++-++|+|+++.........|...+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000 000001223333322221 124566799999999888888888888888766677777666554 333
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
..+.. +...+.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+.-+..+.
T Consensus 164 ~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22221 23579999999999999998876433322 223556789999999887554443
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=4.7e-09 Score=106.89 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=165.2
Q ss_pred cceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCCh-h--hhhhhhcccCccCeeeccCCCccccc--chhhhcCCC
Q 036168 551 RARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAI-E--VLSREIGNLKHLRYLDLSGHDKIKKL--PNSICELHS 625 (846)
Q Consensus 551 ~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~--~l~~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~ 625 (846)
.|+.|.+.++. ....+.+..+-..+++++.|.+.++.. + .+-..-..|.+|++|+|..|..++.. ......+++
T Consensus 139 ~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 34555555322 223344555667889999998888763 2 22222345899999999988766643 223456899
Q ss_pred CcEEecCCcCCCcc--ccccccccCCCcEEEeccccccc---ccccCCCCCCCCEeccccccCcccch--hhccCCCCcC
Q 036168 626 LQTVCLGGCRELEE--LPKDIRYLVNLRMFVVSTKQKSL---LESGIGCLSSLRFLMISDCENLEYLF--DDIDQLCVLR 698 (846)
Q Consensus 626 L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~ 698 (846)
|.+|++++|..+.. +..-..++.+|+.+.+.+|.-.. +...-+.+..+-.+++..|+.+++.. ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999986554 22233455566666555553321 11112344556666777776665432 2223577899
Q ss_pred EEEeecCCCCcccc--ccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhc
Q 036168 699 TIFIADCPRLISLP--PAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQ 776 (846)
Q Consensus 699 ~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~ 776 (846)
.|..++|..++..+ ....++++|+.|-++.|..++. ..+....-....|+.+++.+|..+..-.-.-+.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---------RGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---------hhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 99999987755332 2245789999999999976552 122222333457888888877655433111123
Q ss_pred CCCCccceeecccccccccC-----CcCCCCCCCcceeeccCCccccccCC
Q 036168 777 GSTKTLKTLIIRNCPNFMAL-----PESLRNLEALETLAIGGCPALSERCK 822 (846)
Q Consensus 777 ~~l~~L~~L~L~~~~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~~ 822 (846)
.+++.|+.|.|+.|...++. ...-..+..|+.|.+++||.+++...
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 68999999999999776644 22334567899999999998887543
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.8e-09 Score=103.48 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=29.4
Q ss_pred eeEEEeCCCChh--hhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCc
Q 036168 579 LRVIDLSDSAIE--VLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELE 638 (846)
Q Consensus 579 L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~ 638 (846)
|+.|||++..++ .+..-+..|.+|+.|.|.++.....+-..+.+-.+|+.||+++|+.++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc
Confidence 455555555444 333334445555555555544433444444445555555555554433
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.5e-06 Score=97.78 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=117.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC--CeeEEEEecCcccHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF--KLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 241 (846)
+++||-+..++.|.+++... .-...+.++|+.|+||||+|+.+++..--.+.. .....-.+..+ ...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHH
Confidence 56899999999999998763 234677899999999999999986532110000 00000001111 11111
Q ss_pred HHHHh-----cCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hH
Q 036168 242 IIKSI-----TGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NK 311 (846)
Q Consensus 242 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~ 311 (846)
|...- .-........+++.+.+... ..++.-++|+|+++......+..+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000 00000112333333333221 1234458999999988888888888888776666667666544 33
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+...... +...+.+++++.++..+.+.+.+...+...+ .+....|++.++|.+.-+..+
T Consensus 167 il~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3322221 2347999999999999999887755443322 356788999999988655443
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=2.7e-08 Score=99.31 Aligned_cols=205 Identities=20% Similarity=0.192 Sum_probs=141.4
Q ss_pred CceeEEEEEcCCCCc---chhhhhhcccccceEEEeccCCCc-------chhHHHHHhhccCCceeEEEeCCCChh----
Q 036168 525 KRVRHLSFVGANTSI---NDFSSLLSDSRRARTILFPINDEK-------TNQSILTSCISKSQFLRVIDLSDSAIE---- 590 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~---~~~~~~~~~~~~lr~l~l~~~~~~-------~~~~~~~~~~~~~~~L~~L~L~~~~~~---- 590 (846)
..+..+.+.++.+.. ..+...+.+.++|+...++.--.+ ....++...+.+++.|++|+||+|.+.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 356667777666553 234455666777877766522112 112345567788999999999999875
Q ss_pred -hhhhhhcccCccCeeeccCCCcccc----cc---------hhhhcCCCCcEEecCCcCCCcc-----ccccccccCCCc
Q 036168 591 -VLSREIGNLKHLRYLDLSGHDKIKK----LP---------NSICELHSLQTVCLGGCRELEE-----LPKDIRYLVNLR 651 (846)
Q Consensus 591 -~l~~~~~~l~~L~~L~L~~~~~~~~----lp---------~~~~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~ 651 (846)
.+-.-+..+..|+.|.|.+|..... +. .....-+.|+++...+|+ +.. +...+...+.|.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccc
Confidence 2334467789999999998753321 11 122345789999999877 333 345567889999
Q ss_pred EEEecccccc-----cccccCCCCCCCCEeccccccCcc----cchhhccCCCCcCEEEeecCCCCcc----ccccc-cC
Q 036168 652 MFVVSTKQKS-----LLESGIGCLSSLRFLMISDCENLE----YLFDDIDQLCVLRTIFIADCPRLIS----LPPAV-KY 717 (846)
Q Consensus 652 ~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~-~~ 717 (846)
.+.++.|.+. .+...+..+++|+.|+|.+|.... .+...+..+++|+.|++++|..-.. +...+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 9999999875 233467889999999999987654 3456677899999999999964321 22222 34
Q ss_pred CCCcCeEecccCc
Q 036168 718 LSSLETLMLEDCE 730 (846)
Q Consensus 718 l~~L~~L~l~~~~ 730 (846)
.|+|+.|.+.+|.
T Consensus 269 ~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 269 APSLEVLELAGNE 281 (382)
T ss_pred CCCCceeccCcch
Confidence 6899999999984
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.57 E-value=3.7e-06 Score=91.27 Aligned_cols=186 Identities=15% Similarity=0.198 Sum_probs=115.5
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh--------------------ccCC
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ--------------------EHFK 222 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~ 222 (846)
-.+++|.+..++.+.+++... .-.+.+.++|++|+||||+|+.+.....-. .+++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 356899999999999988653 234578899999999999998887642110 0122
Q ss_pred eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcE
Q 036168 223 LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSK 302 (846)
Q Consensus 223 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 302 (846)
.+++........ +..++++..+... -..+++-++|+|+++.........+...+......+.
T Consensus 88 -~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 -VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 122221111111 1112222221100 0123455899999976666667778888866566677
Q ss_pred EEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 303 ILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 303 iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+|++|.+.. +...... +...+++.+++.++..+++...+...+...+ .+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 777776544 2222221 1236888999999999999887754443222 3677889999999997665544
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.4e-06 Score=96.93 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh-------------------ccCCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ-------------------EHFKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 224 (846)
.++||-+..++.|..++... .-...+.++|+.|+||||+|+.+++..--. +.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 56899999999999999653 224567899999999999999988632111 111112
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
+.+..... ...+++.+.+... ..++.-++|+|+++.........+...+....+.
T Consensus 91 ~eidaas~---------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASR---------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccccc---------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22222211 2233332222211 1345568999999888877888888888876667
Q ss_pred cEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 301 SKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 301 s~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+++|++|.+. .+...+.. +...+.+.+++.++....+...+...+.... .+....|++.++|.+.-+..+
T Consensus 150 ~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred eEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 7777766543 33222211 2236889999999988877777644443222 245678999999988655443
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.3e-06 Score=94.24 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=111.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhcc-------------------CCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEH-------------------FKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 224 (846)
.+++|.+...+.|...+... .-+..+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 56899998888888887653 22356889999999999999999864211100 0011
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR-----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAK 299 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 299 (846)
+.++.+... ..+++. .+.+. ..+++-++|+|+++.......+.+...+...+.
T Consensus 89 ~el~aa~~~---------------------gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDAASNR---------------------GIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeCcccC---------------------CHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 122221111 122222 12211 234567999999977666666777777766544
Q ss_pred CcEEEEeCCC-hHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC-chHHHHHhh
Q 036168 300 GSKILVTTRS-NKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI-PLAVRTLGS 377 (846)
Q Consensus 300 gs~iiiTtR~-~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 377 (846)
...+|++|.+ ..+...... +...+.+.+++.++....+...+...+...+ .++...|++.++|. +.++..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555545444 334333322 2347899999999999998887754433222 35667888888665 566666654
Q ss_pred h
Q 036168 378 L 378 (846)
Q Consensus 378 ~ 378 (846)
.
T Consensus 222 l 222 (472)
T PRK14962 222 V 222 (472)
T ss_pred H
Confidence 3
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.1e-06 Score=95.46 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|++..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-.+ |.... .+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 57899999999999988653 2346788999999999999999986421111 11100 011111111111
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHHH
Q 036168 244 KSITG-----QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKVA 313 (846)
Q Consensus 244 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~~ 313 (846)
..... ........+++...+... ..+++-++|+|+++......+..|...+...+..+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 000112223332222111 1233446999999887777788888888766556666655543 3333
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
..... +...+.+.+++.++....+...+...+...+ .+.+..+++.++|.+.-+
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDG 217 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 22221 2347999999999999988887754433222 256788999999977543
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=1.3e-06 Score=98.10 Aligned_cols=199 Identities=12% Similarity=0.140 Sum_probs=115.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH-
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI- 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 242 (846)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+..--..... +..+..+.....+...-
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccHHHHHHhccCc
Confidence 57899999999999998753 2346789999999999999998876321110000 00000000000000000
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMG 317 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~ 317 (846)
..-+.-........+.+.+.+... ..+++-++|+|+++.........|...+......+++|++|.+.. +...+.
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 000000000112223333322211 134566999999987776667778888776555667777775432 221111
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+...+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+
T Consensus 168 --SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 168 --SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred --HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 1123688889999999999988875544332 2356789999999998655444
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.9e-06 Score=89.42 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=118.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEE----EEecCcccHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIW----ICVSEDFEQRQI 238 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w----v~~~~~~~~~~~ 238 (846)
..+++|.++..+.|.+.+... .-...+.++|+.|+||+|+|..+++..--......... .+... +..-..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChH
Confidence 467899999999999988763 33456889999999999999888763211110000000 00000 000011
Q ss_pred HHHHHHHhcC----------CC----CCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCC
Q 036168 239 MTKIIKSITG----------QN----PGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAK 299 (846)
Q Consensus 239 ~~~i~~~l~~----------~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 299 (846)
.+.+...-.. .. .....++++.+ +.+.+ .+.+-++|+|+++..+......|...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 1111111000 00 01223444333 33333 25567999999998888888888888877666
Q ss_pred CcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 300 GSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 300 gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
++.+|++|.+.. +...+. .+...+.+.+++.++..+++..... .. + .+....++..++|.|.....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~--SRc~~i~l~~l~~~~i~~~L~~~~~---~~--~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIR--SRCRKLRLRPLAPEDVIDALAAAGP---DL--P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhh--ccceEEECCCCCHHHHHHHHHHhcc---cC--C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 777777777654 322222 2345799999999999999987541 11 1 1222678999999998665553
No 89
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=96.62 Aligned_cols=293 Identities=17% Similarity=0.198 Sum_probs=178.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKS-ITGQNPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l 267 (846)
...|.+.++|.|||||||++-.+.. ....|..-+|+..-.+.+.....-.++.. ++-.. .+.+.....+..+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~---~~g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV---QPGDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc---ccchHHHHHHHHHH
Confidence 3468999999999999999988776 56678766666555666655555555544 43211 12223344555667
Q ss_pred cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCCCCCCcEecCCCChH-HHHHHHHHhhccC
Q 036168 268 NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGTMRGTAGYKLEGLPYE-SCLSLFMKCAFKE 346 (846)
Q Consensus 268 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~~~~~~~~l~~l~~~-~a~~L~~~~a~~~ 346 (846)
.++|.++|+||....- ..-..+.-.+....+.-.|+.|+|...... +..++.+.+++.. ++.++|...+...
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~~------ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILVA------GEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhccc------ccccccCCccccCCchhHHHHHHHHHh
Confidence 7899999999973221 111223334445555667889998764322 2346778888766 6889988877543
Q ss_pred CCC--CCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHHHHhhh------hccccccCCCchHHHHHhHhcCC
Q 036168 347 GQH--KHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEYVRDNE------IWKLEQKKNDILPALRLSYDQLP 418 (846)
Q Consensus 347 ~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~~~~~------~~~~~~~~~~v~~~l~~sy~~L~ 418 (846)
... -.........+|.++.+|.|++|...++..+.-.....-..+.+.. .....-........+.+||.-|.
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 322 1223345678999999999999999998887533222222111110 00001112356678999999999
Q ss_pred hhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEc
Q 036168 419 PHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMH 498 (846)
Q Consensus 419 ~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH 498 (846)
...+-.|..++.|...|... ...|.+.|-.. ..+.-.....+..+++.+++.-.... ....|+.-
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~------~~a~~Rl~ 303 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLL------GRARYRLL 303 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhh------hHHHHHHH
Confidence 99999999999998887655 24455554321 01122333445667777776533211 11234444
Q ss_pred hHHHHHHHHhh
Q 036168 499 DLMHDLAQLVA 509 (846)
Q Consensus 499 ~lv~~~~~~~~ 509 (846)
+-.+.|+..+.
T Consensus 304 eT~r~YalaeL 314 (414)
T COG3903 304 ETGRRYALAEL 314 (414)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.9e-06 Score=91.23 Aligned_cols=199 Identities=13% Similarity=0.169 Sum_probs=121.0
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc--cCCeeEEEEecCcccHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE--HFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~ 239 (846)
....++|.++..+.+...+... ..+..+.|+|+.|+||||+|..+++..--.. .+... .....+......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 4567899999999999999653 3356789999999999999998876421100 01110 001111111122
Q ss_pred HHHHHH-------hcC---CC----CCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 240 TKIIKS-------ITG---QN----PGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 240 ~~i~~~-------l~~---~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
+.+... +.. .. .....++++. .+.+++ .+++-++|+|+++..+......+...+......
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333221 100 00 1122345443 334333 356679999999888888888888888765555
Q ss_pred cEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 301 SKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 301 s~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
..+|++|..+ .+.....+ +...+.+.+++.++..+++........ ...+.+..+++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555555433 33333222 235899999999999999987432111 113456789999999998665443
No 91
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.52 E-value=4.1e-06 Score=84.26 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=93.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
.+.+.|+|++|+|||+|++.+++... ..-..+.|+++..... ...++.+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 35789999999999999999987432 2223455665532100 00111111111
Q ss_pred eEEEEeeccCCCC-hhhHHH-HHHhhCCC-CCC-cEEEEeCCChH---------HHHHhCCCCCCCcEecCCCChHHHHH
Q 036168 271 IYLLVMDDVWNED-PKVWDE-LKSLLLGS-AKG-SKILVTTRSNK---------VASIMGTMRGTAGYKLEGLPYESCLS 337 (846)
Q Consensus 271 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iiiTtR~~~---------~~~~~~~~~~~~~~~l~~l~~~~a~~ 337 (846)
--+|++||+.... ...|+. +...+... ..| .++|+||+.+. +...+.+. .+++++++++++-.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQPLSDEEKLQ 174 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecCCCHHHHHH
Confidence 1389999996532 233432 33333321 123 37999998642 22333332 389999999999999
Q ss_pred HHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 338 LFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 338 L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
++.+++...+... -+++..-|++.+.|..-++..+-..+
T Consensus 175 ~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 175 ALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9988775433322 23677889999998877766555444
No 92
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=3.6e-06 Score=84.55 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=90.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|..|+|||+|++.+++.. ......+.|++..+ ....+. +.+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 469999999999999999998853 22233456665322 111111 111 111 122
Q ss_pred EEEEeeccCCCC-hhhHH-HHHHhhCC-CCCCcEEEEeCCChH---------HHHHhCCCCCCCcEecCCCChHHHHHHH
Q 036168 272 YLLVMDDVWNED-PKVWD-ELKSLLLG-SAKGSKILVTTRSNK---------VASIMGTMRGTAGYKLEGLPYESCLSLF 339 (846)
Q Consensus 272 ~LlVlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~iiiTtR~~~---------~~~~~~~~~~~~~~~l~~l~~~~a~~L~ 339 (846)
-+||+||+.... ...|+ .+...+.. ...|..||+|++... +...+.. ...+++++++.++-.+++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~---~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ---CIRIGLPVLDDVARAAVL 171 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc---CceEEecCCCHHHHHHHH
Confidence 589999996432 12232 33333322 123567999998532 1122212 237899999999999999
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 340 MKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+++...+... -.+....|++.+.|..-.+..+
T Consensus 172 ~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 172 RERAQRRGLAL---DEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHHHH
Confidence 98775543322 2366778889998777665333
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-08 Score=99.20 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=111.9
Q ss_pred hHHHHHhhccCCceeEEEeCCCChh-hhhhhhcccCccCeeeccCCCccccc--chhhhcCCCCcEEecCCcCCCccccc
Q 036168 566 QSILTSCISKSQFLRVIDLSDSAIE-VLSREIGNLKHLRYLDLSGHDKIKKL--PNSICELHSLQTVCLGGCRELEELPK 642 (846)
Q Consensus 566 ~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~ 642 (846)
.+.+...++.|.+|+.|+|.++.+. .+-..+..-.+|+.|+|++|+.++.. .-.+.+|+.|..|++++|......-.
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 4455667778888888888888876 55666777788888888888776643 33467788888888888865443211
Q ss_pred cc--cccCCCcEEEecccccc----cccccCCCCCCCCEeccccccCccc-chhhccCCCCcCEEEeecCCCCccccc--
Q 036168 643 DI--RYLVNLRMFVVSTKQKS----LLESGIGCLSSLRFLMISDCENLEY-LFDDIDQLCVLRTIFIADCPRLISLPP-- 713 (846)
Q Consensus 643 ~~--~~l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~-- 713 (846)
.+ .--++|..|+++++... .+......+++|..|+|++|..++. ....+.+++.|++|.++.|..+ .|.
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETL 356 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHe
Confidence 11 11256777788776433 2222346788899999998876653 3456778888999999988643 222
Q ss_pred -cccCCCCcCeEecccCc
Q 036168 714 -AVKYLSSLETLMLEDCE 730 (846)
Q Consensus 714 -~~~~l~~L~~L~l~~~~ 730 (846)
.+...|+|.+|++.+|-
T Consensus 357 ~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccCcceEEEEecccc
Confidence 25677888888888873
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.8e-06 Score=90.27 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=112.4
Q ss_pred CccccchHHHHHHHHHHhcCCCC----CCcceeEEEEecCCCCcHHHHHHHHhcchhhh------------------ccC
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG----ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ------------------EHF 221 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f 221 (846)
++++|.+..++.|...+...... ...-++.+.++|++|+||||+|+.++...--. +.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46889999999999999764210 00135678899999999999999987531100 001
Q ss_pred CeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCC
Q 036168 222 KLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGS 297 (846)
Q Consensus 222 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (846)
+...++... ......+++.+.+... ..+++-++|+|+++.........|...+...
T Consensus 85 pD~~~i~~~--------------------~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPE--------------------GLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEeccc--------------------cccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111122110 0112233332222111 1245558888999887777777788888776
Q ss_pred CCCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 298 AKGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 298 ~~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.++..+|++|.+. .+...+.+ +...+.+.+++.++..+.+.... +. . .+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc~~i~f~~~~~~~i~~~L~~~~---~~--~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RCRHVALRTPSVEAVAEVLVRRD---GV--D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hCeEEECCCCCHHHHHHHHHHhc---CC--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 6677777766664 33333222 23479999999999998887532 11 1 255678999999999755444
No 95
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=6.3e-07 Score=80.88 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=76.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
+++.|.|+.|+||||++++++.+.. ....++|++............+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCC
Confidence 5899999999999999999987432 2244667765444321100000 2233333333467
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhC---CCCCCCcEecCCCChHH
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMG---TMRGTAGYKLEGLPYES 334 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~---~~~~~~~~~l~~l~~~~ 334 (846)
.+++||++... ..|......+....+..+|++|+.......... ...+...+++.||+..|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999655 456666666655556779999999876653311 11123357899998776
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.3e-06 Score=96.01 Aligned_cols=178 Identities=16% Similarity=0.228 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc-------------------cCCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE-------------------HFKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 224 (846)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++..--.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 56899999999999998753 2235678999999999999999976421110 11111
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
+++..+. ....+++.+.+... ..+++-++|+|+++.........+...+......
T Consensus 91 ~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 2221111 11223332222211 1355679999999887777778888888776666
Q ss_pred cEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 301 SKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 301 s~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
+.+|++|.+. .+...+. .+...+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+
T Consensus 150 ~~fIL~t~d~~kil~tI~--SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 150 VKFILATTDPQKIPVTVL--SRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEEEeCChhhCchhHH--HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 7777666543 2221111 1123689999999999988887764433222 2356688999999988543
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.49 E-value=4.8e-06 Score=80.97 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCC
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEG 347 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~ 347 (846)
+.+-++|+|+++.......+.+...+....+.+.+|++|++. .+...... +...+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~----g 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQ----G 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHc----C
Confidence 456689999998877777888888887766677777777654 22222221 2347999999999999888876 1
Q ss_pred CCCCcchHHHHHHHHHhhCCCchH
Q 036168 348 QHKHPNLVKIGEEIVKKCGGIPLA 371 (846)
Q Consensus 348 ~~~~~~~~~~~~~i~~~~~g~Pla 371 (846)
.+ .+.+..|++.++|.|..
T Consensus 169 --i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 --IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred --CC---HHHHHHHHHHcCCCccc
Confidence 12 26688999999998863
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.47 E-value=5.2e-06 Score=83.52 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=91.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
.+.+.|+|.+|+|||+||+.+++... .... ...+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-cc
Confidence 45788999999999999999988432 2222 34455432211 00 0 011 22
Q ss_pred eEEEEeeccCCCChhhHHHHHHhhCCC-CCCc-EEEEeCCChHHHHHhC-----CCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 271 IYLLVMDDVWNEDPKVWDELKSLLLGS-AKGS-KILVTTRSNKVASIMG-----TMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iiiTtR~~~~~~~~~-----~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.-+||+||++..+...-+.+...+... ..+. .||+|++......... .......+.+.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347999999765444444455555321 2233 4667766543221100 11112478999999988777777655
Q ss_pred ccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 344 FKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
...+... -.++...+++.+.|++..+..+...+
T Consensus 171 ~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3333222 23677888999999999987776665
No 99
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3.2e-07 Score=105.92 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=69.4
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEecccc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISD 680 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 680 (846)
++.|+|++|.....+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666555566666666666666666666655566666666666666666666665 5566666677777777776
Q ss_pred ccCcccchhhccCC-CCcCEEEeecCCCCcc
Q 036168 681 CENLEYLFDDIDQL-CVLRTIFIADCPRLIS 710 (846)
Q Consensus 681 ~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 710 (846)
|.....+|..++.+ .++..+++.+|..+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 66665666665543 3556677776654433
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.1e-06 Score=90.58 Aligned_cols=200 Identities=14% Similarity=0.172 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE-ecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC-VSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 242 (846)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-...+....|.. ....+..=...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 56899999999999988652 2245588999999999999999886421111110000000 00000000111111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC-ChH
Q 036168 243 IKSITG-----QNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR-SNK 311 (846)
Q Consensus 243 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR-~~~ 311 (846)
...... ........+++.+.. +.+ .+++-++|+|+++......++.+...+....+.+.+|++|. ...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~-~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLR-ENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHH-HHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 110000 000111233333322 222 34556889999987777788888888887666777666554 333
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
+...... +...+++.+++.++..+.+...+...+... ..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3322211 123688999999999888887764433222 236778999999998864444
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=4.7e-07 Score=104.56 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=83.7
Q ss_pred CCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEee
Q 036168 625 SLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIA 703 (846)
Q Consensus 625 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 703 (846)
.++.|+|++|.....+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888887766778888888888888888888876 667778888888888888887777788888888888888888
Q ss_pred cCCCCccccccccCC-CCcCeEecccCcc
Q 036168 704 DCPRLISLPPAVKYL-SSLETLMLEDCES 731 (846)
Q Consensus 704 ~~~~~~~l~~~~~~l-~~L~~L~l~~~~~ 731 (846)
+|.....+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 887777788776553 4667778877753
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=9.5e-06 Score=91.78 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=119.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC--eeEEEEecCcccHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK--LKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 240 (846)
-.+++|.+..++.|.+.+... .-...+.++|+.|+||||+|+.+++..--..... ...+-.+..+ ...+
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~ 93 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQ 93 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHH
Confidence 357899999999999999753 3345788999999999999999987421111000 0000001111 1111
Q ss_pred HHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC-Ch
Q 036168 241 KIIKSITG-----QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR-SN 310 (846)
Q Consensus 241 ~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR-~~ 310 (846)
.|...... ........+++.+.+... ..+++-++|+|+++.........|...+......+.+|++|. ..
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 22111100 001122334433322211 123455799999988777778888888877666777766553 33
Q ss_pred HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 311 KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
.+...+.. +...+.+..++.++....+.+.+...+...+ .+.+..|++.++|.+.-+....
T Consensus 174 kll~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 33332222 2347899999999999999888754443322 2667889999999987654443
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.2e-05 Score=90.34 Aligned_cols=197 Identities=14% Similarity=0.142 Sum_probs=116.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++..--....+ +-.+..+. ..+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~----~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCE----SCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccH----HHHHhh
Confidence 56899999999999999753 2345678999999999999999986321101000 00011110 011111
Q ss_pred HHh-------cCCCCCCCCHHHHHH---HHHHH-hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hH
Q 036168 244 KSI-------TGQNPGDLDTDQLRR---ILRDR-LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NK 311 (846)
Q Consensus 244 ~~l-------~~~~~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~ 311 (846)
..- ..........+++.+ .+... ..+++-++|+|+++.........|...+........+|++|.+ ..
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000 000001112232222 11111 1345568999999888888888888888876667766665544 43
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHHhh
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTLGS 377 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 377 (846)
+...+.. +...+.+.+++.++..+.+...+...+...+ .+.+..|++.++|.+. ++..+-.
T Consensus 161 ll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333222 2347999999999999888887754443222 2566788999999875 4444433
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.2e-05 Score=90.07 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=116.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++..--....... .+..+ ...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHh
Confidence 46799998888888888652 224678899999999999999998743111000000 00000 0111111
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHHH-----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHH
Q 036168 244 KSITG-----QNPGDLDTDQLRRILRDR-----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKV 312 (846)
Q Consensus 244 ~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~ 312 (846)
..... ........+++.. +.+. ..+++-++|+|+++.........|...+........+|++|.+ ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 10000 0000112222221 2221 2355679999999888777788888888665455666666655 333
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc-hHHHHHhhhh
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP-LAVRTLGSLL 379 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 379 (846)
...+.. +...+.+.+++.++....+...+...+...+ .+.+..|++.++|.+ .|+..+...+
T Consensus 163 l~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 332221 2237899999999999988887754433222 356788999999965 5676665444
No 105
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=6.6e-06 Score=85.90 Aligned_cols=217 Identities=15% Similarity=0.138 Sum_probs=132.2
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
..++..+||+.++..+.+++...-+. ...+.+-|.|-+|.|||.+...++.+......-..++++++..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 45788999999999999999776544 5567899999999999999999998643332223568888877677888888
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcC--ceEEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEEeCCC--hHHH--
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNG--EIYLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILVTTRS--NKVA-- 313 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~--~~~~-- 313 (846)
.|...+...........+..+.+..+..+ +.+|+|+|..+......-..+...|.+ .-+++++|+.--- -+..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88888732211111224455556555543 368999998854322222223333332 2456666643321 1111
Q ss_pred --HHhCC--CCCCCcEecCCCChHHHHHHHHHhhccCCCC--CCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 314 --SIMGT--MRGTAGYKLEGLPYESCLSLFMKCAFKEGQH--KHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 314 --~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
..... .-....+...|.+.++..++|..+.-..... ..+.++-.|++++.-.|-+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 1123478889999999999999887443221 112333444455544555555555554333
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.6e-05 Score=91.01 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=117.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-..... ....+..-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 57899999999999888653 2245678999999999999999986421100000 000111112222222
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HH
Q 036168 244 KSITGQ-----NPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KV 312 (846)
Q Consensus 244 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~ 312 (846)
...... .......+++.+.+ +.+ .+++-++|+|+++.......+.|...+......+.+|++|.+. .+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 211100 00112333332222 221 2456689999998777677778888877766667777666543 33
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhh
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGS 377 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 377 (846)
...... +...+.+..++.++....+...+...+...+ .+.+..|++.++|.+..+...-.
T Consensus 164 l~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 332221 2246889999999999888887755443322 26678999999999876554433
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1.7e-05 Score=90.18 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=112.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.++...--....+ .+-.+..+ ......-.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C---~~~~~~~~ 87 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQEC---IENVNNSL 87 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHH---HHhhcCCC
Confidence 56899999999999999653 2345678999999999999999976321100000 00000000 00000000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC-ChHHHHHhC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR-SNKVASIMG 317 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR-~~~~~~~~~ 317 (846)
.-+..........+++.+ +.+.+ .+++-++|+|+++......+..|...+...+....+|++|. ...+.....
T Consensus 88 Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred cEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 000000001112222222 22222 35566999999988777788888888876555666555554 444433222
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
. +...+.+.+++.++....+...+...+.... .+.+..|++.++|.+.-+..
T Consensus 167 S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 167 S--RVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred h--hceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 2347999999999999888876644433222 25678899999997754433
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.5e-05 Score=86.53 Aligned_cols=184 Identities=13% Similarity=0.213 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh------ccCCeeE-EEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ------EHFKLKI-WICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~-wv~~~~~~~~~ 236 (846)
.+++|.+...+.+.+.+... .-.+.+.++|++|+||||+|+.+.+...-. ..|...+ -+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 56799999999999998652 335688899999999999999997632110 1121111 1111111111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHHHHH
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKVASI 315 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~~~~ 315 (846)
+..++++..+... -..+++-++++|+++......+..+...+......+.+|++|.. ..+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111222211000 01234558999999766666677777777654445566655533 233222
Q ss_pred hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 316 MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 316 ~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
... +...+++.+++.++....+...+...+...+ .+.+..+++.++|.+-.+..
T Consensus 155 l~s--r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 155 ILS--RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHh--cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHH
Confidence 211 1237899999999999988887755443322 36778899999997764433
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.6e-05 Score=93.02 Aligned_cols=193 Identities=16% Similarity=0.165 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-....... .+..+.+ .+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHH
Confidence 46899999999999998753 223567899999999999999997642111110000 0000000 00000
Q ss_pred HH-------hcCCCCCCCCHHHHHHHHHH----HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-H
Q 036168 244 KS-------ITGQNPGDLDTDQLRRILRD----RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-K 311 (846)
Q Consensus 244 ~~-------l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~ 311 (846)
.. +.........++++.+.... -..++.-++|||+++......+..|+.++......+.+|++|.+. .
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000011123333322111 123455689999999888888888999998776677777666443 3
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
+...+.. +...|.+..++.++..+++.+.+...+... ..+....|++.++|.+..+.
T Consensus 163 Ll~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 4333322 234799999999999988887664433322 22456789999999885443
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2e-05 Score=87.19 Aligned_cols=182 Identities=18% Similarity=0.210 Sum_probs=117.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc--c----------------CC-ee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE--H----------------FK-LK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------f~-~~ 224 (846)
.+++|-+...+.|...+... .-.+...++|+.|+||||+|+.+++..--.. . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 56899999999999998653 2345678999999999999998876321000 0 10 01
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
+.+.... ....+++.+.+... ..+++-++|+|+++....+....|...+...++.
T Consensus 89 ~eldaas---------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAAS---------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccc---------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 1111111 11233333333221 1245568999999888888888888888776667
Q ss_pred cEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 301 SKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 301 s~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+++|++|.+. .+...... +...+.+.+++.++....+...+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 7777777653 22222211 234799999999999998887775544332 23677899999999996555443
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=1.5e-05 Score=78.92 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=104.0
Q ss_pred cccch-HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHH
Q 036168 166 IIGRD-EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIK 244 (846)
Q Consensus 166 ~vGr~-~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 244 (846)
++|.. +..-.....+....+ .....+.|+|..|.|||.|.+++++.......=..++|++ ..+....+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 34542 333344444544321 2344578999999999999999998532221112355653 3455555555
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh-hhHH-HHHHhhCC-CCCCcEEEEeCCCh---------HH
Q 036168 245 SITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP-KVWD-ELKSLLLG-SAKGSKILVTTRSN---------KV 312 (846)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iiiTtR~~---------~~ 312 (846)
.+... ... .+++.+++ -=+|++||++.... ..|+ .+...+.. ...|-+||+|++.. ++
T Consensus 82 ~~~~~-----~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRDG-----EIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHTT-----SHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHcc-----cch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 55331 222 23333332 24899999976432 2232 33333322 12356899999643 22
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
.....+ ...+++.+.+.++..+++.+.+...+... -.+++.-|++.+.+..-.+..+-..|
T Consensus 152 ~SRl~~---Gl~~~l~~pd~~~r~~il~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 152 RSRLSW---GLVVELQPPDDEDRRRILQKKAKERGIEL---PEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHC---SEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhHhh---cchhhcCCCCHHHHHHHHHHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 223333 23799999999999999999986554432 23677888888888777666554443
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.33 E-value=5.4e-06 Score=89.66 Aligned_cols=183 Identities=22% Similarity=0.207 Sum_probs=101.5
Q ss_pred cCCccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
...++.|+++.+++|.+.+...... +-..++-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3467899999999999887432111 0022456899999999999999999884 22222 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC-----------ChhhHHHHHHh---hCC--C
Q 036168 235 QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE-----------DPKVWDELKSL---LLG--S 297 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~~--~ 297 (846)
..+..... + ........+.+.. ...+.+|++|+++.. +......+... +.. .
T Consensus 190 -~~l~~~~~----g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKYI----G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHhh----h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111111 0 0111112222222 345689999998642 11222223333 222 1
Q ss_pred CCCcEEEEeCCChHHHHH-h-CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 298 AKGSKILVTTRSNKVASI-M-GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 298 ~~gs~iiiTtR~~~~~~~-~-~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
..+..||.||........ . ........+.+...+.++..++|..++........-+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 346678888876542211 1 1111134789999999999999998875433221112 356777776654
No 113
>PRK09087 hypothetical protein; Validated
Probab=98.33 E-value=6.8e-06 Score=81.74 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=88.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
.+.+.|+|+.|+|||+|++.+++.. ...|++.. ....+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3568999999999999999888632 11233321 1111111111 11
Q ss_pred eEEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEEeCCCh---------HHHHHhCCCCCCCcEecCCCChHHHHHHHH
Q 036168 271 IYLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILVTTRSN---------KVASIMGTMRGTAGYKLEGLPYESCLSLFM 340 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~---------~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~ 340 (846)
-+|++||+...... -+.+...+.. ...|..||+|++.+ ++...+... ..+++++++.++-.+++.
T Consensus 89 -~~l~iDDi~~~~~~-~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 -GPVLIEDIDAGGFD-ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -CeEEEECCCCCCCC-HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHH
Confidence 27888999643211 1233333322 12356799988743 233333332 389999999999999999
Q ss_pred HhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 341 KCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
+.+...+...+ +++..-|++++.|..-++..+-..|
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 98855433222 3677889999988887776544333
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.7e-05 Score=86.38 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=112.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh---h----------------ccCCee
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV---Q----------------EHFKLK 224 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~f~~~ 224 (846)
.+++|.+..++.+..++... .-.....++|+.|+||||+|+.++....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46899999999999999653 22456678999999999999998763210 0 001111
Q ss_pred EEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCC
Q 036168 225 IWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAK 299 (846)
Q Consensus 225 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 299 (846)
+++..+. ....+++. .+.+.. .+++-++|+|+++.......+.+...+....+
T Consensus 91 ~eidaas---------------------~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 91 IEIDAAS---------------------NRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred EEEeCcc---------------------CCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 1121111 11122111 122221 35567999999987776677788888776655
Q ss_pred CcEEEEeCCC-hHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 300 GSKILVTTRS-NKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 300 gs~iiiTtR~-~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
...+|++|.+ ..+...... +...+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+....
T Consensus 149 ~~v~Il~tt~~~kl~~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CeEEEEEECCHHHHHHHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666655543 333322211 123789999999999988888775444322 23567789999999876554444
No 115
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=2.6e-05 Score=85.97 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=104.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
..-+.|+|..|.|||+|++++.+.......-..+++++ ..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34688999999999999999988432211112344443 3456666666553210 11233333333 3
Q ss_pred eEEEEeeccCCCC--hhhHHHHHHhhCC-CCCCcEEEEeCCChH---------HHHHhCCCCCCCcEecCCCChHHHHHH
Q 036168 271 IYLLVMDDVWNED--PKVWDELKSLLLG-SAKGSKILVTTRSNK---------VASIMGTMRGTAGYKLEGLPYESCLSL 338 (846)
Q Consensus 271 r~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~iiiTtR~~~---------~~~~~~~~~~~~~~~l~~l~~~~a~~L 338 (846)
.-+||+||+.... ....+.+...+.. ...|..||+|+.... +...+.+ .....+++++.++..++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~---Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM---GLSIAIQKLDNKTATAI 283 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC---CceeccCCcCHHHHHHH
Confidence 3488999996543 2223445444432 123446888876432 1111222 23688999999999999
Q ss_pred HHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 339 FMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
+.+.+...+.. ..-..++..-|++.++|.|..+..+...+
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99988543321 12234778999999999999887776444
No 116
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=9.3e-07 Score=88.58 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=61.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc--ccHHHHHHHHHHHhcCCCCCCCCHH------HHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED--FEQRQIMTKIIKSITGQNPGDLDTD------QLRRI 262 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 262 (846)
...++|+|++|+|||||++.+++..... +|+..+|+.+.+. .+..++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999975444 8999999997776 7889999998444322222211111 11122
Q ss_pred HHHH-hcCceEEEEeeccCC
Q 036168 263 LRDR-LNGEIYLLVMDDVWN 281 (846)
Q Consensus 263 l~~~-l~~kr~LlVlDdv~~ 281 (846)
.... -.++++++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 258999999999943
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=3e-05 Score=87.93 Aligned_cols=199 Identities=14% Similarity=0.200 Sum_probs=114.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE-ecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC-VSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 242 (846)
.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++..--...++...|.. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 56899999999999988653 2245688999999999999998886421111111001110 00000000111111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeC-CChHH
Q 036168 243 IKSITG-----QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTT-RSNKV 312 (846)
Q Consensus 243 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt-R~~~~ 312 (846)
...-.. ........+++.+.+... ..+++-++|+|+++.......+.|...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000112234444333222 23445578999998877777888888887766666665555 33333
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
...+.. +...+++.+++.++....+...+...+...+ .+.+..|++.++|..--+
T Consensus 171 l~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 171 PATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDA 225 (620)
T ss_pred hHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 332221 2347999999999988888876644333222 366789999999966533
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=2.6e-05 Score=78.28 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=94.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.|+|..|+|||.|++.+++.. ...-..++|++... +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3578999999999999999998742 22223466765421 1111 01 122222222
Q ss_pred eEEEEeeccCCC-ChhhHH-HHHHhhCC-CCCCcEEEEeCCChHHH---------HHhCCCCCCCcEecCCCChHHHHHH
Q 036168 271 IYLLVMDDVWNE-DPKVWD-ELKSLLLG-SAKGSKILVTTRSNKVA---------SIMGTMRGTAGYKLEGLPYESCLSL 338 (846)
Q Consensus 271 r~LlVlDdv~~~-~~~~~~-~l~~~l~~-~~~gs~iiiTtR~~~~~---------~~~~~~~~~~~~~l~~l~~~~a~~L 338 (846)
=+||+||+... ....|+ .+...+.. ...|..||+|++..... ..+.+ ...+++.+++.++-.++
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~---gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL---ALVFQMRGLSDEDKLRA 174 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc---CeeeecCCCCHHHHHHH
Confidence 26889999643 223443 35555432 22356789988754321 11111 23688999999999999
Q ss_pred HHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 339 FMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
+..++...+...+ .++..-|++++.|..-.+..+-..|
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9977654432222 3777889999998877766655444
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=98.26 E-value=7.3e-05 Score=77.25 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=77.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.++|++|+||||+|+.+++.....+.-...-|+.++ ..+ +.....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 458899999999999999998742111111111244443 112 222221211 11222233322 23
Q ss_pred EEEEeeccCCC---------ChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCC-----CCCCCcEecCCCChHHHHH
Q 036168 272 YLLVMDDVWNE---------DPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGT-----MRGTAGYKLEGLPYESCLS 337 (846)
Q Consensus 272 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~-----~~~~~~~~l~~l~~~~a~~ 337 (846)
-+|++|++... ..+..+.|...+.....+.+||+++....+...... ......+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 223344555556555556677777765443221110 0113479999999999999
Q ss_pred HHHHhhccCC
Q 036168 338 LFMKCAFKEG 347 (846)
Q Consensus 338 L~~~~a~~~~ 347 (846)
++...+....
T Consensus 204 I~~~~l~~~~ 213 (287)
T CHL00181 204 IAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHhc
Confidence 9888875433
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.2e-06 Score=67.20 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=36.3
Q ss_pred CceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcC
Q 036168 577 QFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCR 635 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 635 (846)
++|++|++++|.+..+|. .|.++++|++|++++|.....-|..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356667777776666653 45666777777777655333333456666666666666654
No 121
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4.7e-05 Score=86.91 Aligned_cols=179 Identities=13% Similarity=0.204 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh---------------------hccCC
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV---------------------QEHFK 222 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~ 222 (846)
.+++|.+..++.|...+... .-.+.+.++|+.|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 56899999999999998653 23456889999999999999888763210 01222
Q ss_pred eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCC
Q 036168 223 LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA 298 (846)
Q Consensus 223 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 298 (846)
. ..+..... ...+++...+.+. ..+++=++|+|+++......+..|...+....
T Consensus 92 ~-~~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 12221111 1122222222111 12344588999998887778888998888766
Q ss_pred CCcEEEEeC-CChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 299 KGSKILVTT-RSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 299 ~gs~iiiTt-R~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
..+.+|++| ....+...+.. +...+.+.+++.++....+...+...+.... .+.+..|++.++|...-+..
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 677766555 44444433322 2347999999999999999887755443322 25678999999997754433
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=5.4e-05 Score=86.39 Aligned_cols=198 Identities=14% Similarity=0.188 Sum_probs=116.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++..--..... .. ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHh
Confidence 56899999999999998753 2235678999999999999999987421110000 00 00111111222222
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHH
Q 036168 244 KSITG-----QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVA 313 (846)
Q Consensus 244 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~ 313 (846)
..... ........+.+.+.+... ..+++-++|+|+++......+..|...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11100 001112333343333221 12455689999998877778888888887655566666555443 333
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
..+.. +...+.+..++.++....+...+...+.... .+.+..|++.++|.+..+..+.
T Consensus 166 pTIrS--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIIS--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHh--heeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22221 2346888899999988888776644333222 2567899999999886554443
No 123
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=2.8e-06 Score=88.49 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=65.7
Q ss_pred HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc--cHHHHHHHHHHHhcCCCCC
Q 036168 175 KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF--EQRQIMTKIIKSITGQNPG 252 (846)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~ 252 (846)
++++++..-.. -.-.+|+|++|+||||||+.+|++.... +|+.++||.+.+.. +..++++.+...+-....+
T Consensus 158 rvID~l~PIGk-----GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIGK-----GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccccc-----CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 45555554322 2467899999999999999999975444 89999999998887 6777777776433222222
Q ss_pred CCCHHHHH-----HHHHHH--hcCceEEEEeeccCC
Q 036168 253 DLDTDQLR-----RILRDR--LNGEIYLLVMDDVWN 281 (846)
Q Consensus 253 ~~~~~~~~-----~~l~~~--l~~kr~LlVlDdv~~ 281 (846)
.....+.. -...++ -.+++++|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 22111111 011112 267999999999943
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=1e-05 Score=87.80 Aligned_cols=182 Identities=20% Similarity=0.178 Sum_probs=99.6
Q ss_pred cCCccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
...++.|+++.++++.+.+...-.. +-..++-|.++|++|+|||++|+.+++. .... |+.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876432110 0023567899999999999999999873 2222 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC-----------ChhhHHHHHHhh---CC--C
Q 036168 235 QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE-----------DPKVWDELKSLL---LG--S 297 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~ 297 (846)
.++ .....+. . ......+.+.. ...+.+|+||+++.. +......+...+ .. .
T Consensus 199 -~~l----~~~~~g~-----~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SEL----VQKFIGE-----G-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHH----hHhhccc-----h-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 1111110 1 11222222222 345689999998642 112222333333 21 1
Q ss_pred CCCcEEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 298 AKGSKILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 298 ~~gs~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
..+..||.||...+..... ....-...+.+++.+.++..++|..+.........-+ ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2355678788765432211 1111234789999999999999998774433222122 24566666654
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=6.8e-05 Score=82.67 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---------------------cCC
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---------------------HFK 222 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 222 (846)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 57899999999999998653 2246788999999999999998876321100 111
Q ss_pred eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHH---HHHH-HhcCceEEEEeeccCCCChhhHHHHHHhhCCCC
Q 036168 223 LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRR---ILRD-RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA 298 (846)
Q Consensus 223 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 298 (846)
.+++.... ....+++.. .+.- -..+++-++|+|+++.......+.|...+....
T Consensus 92 -~~~i~g~~---------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~ 149 (451)
T PRK06305 92 -VLEIDGAS---------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (451)
T ss_pred -eEEeeccc---------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC
Confidence 11111000 111122211 1110 112556789999997766666677888877765
Q ss_pred CCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 299 KGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 299 ~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
....+|++|... .+...+.. +...+++.++++++....+...+...+... ..+.+..|++.++|.+.-+
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 666677666432 22222211 234789999999999988887764433222 2356789999999977543
No 126
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=6.9e-06 Score=86.65 Aligned_cols=138 Identities=20% Similarity=0.307 Sum_probs=89.2
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
+..+++++.|++++|.+..+|. -..+|+.|.+++|..+..+|..+. ++|++|++++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 5567889999999998888872 234699999998888888887553 6899999999877777774 4666
Q ss_pred EEecccccccccccCCCCCCCCEeccccccCcc--cchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 653 FVVSTKQKSLLESGIGCLSSLRFLMISDCENLE--YLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 653 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
|+++.+....++. -.++|+.|.+.+++... .++. .-.++|+.|.+++|..+ .+|..+. .+|+.|+++.|
T Consensus 117 L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccccc---CcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 7776554332211 11356666664432111 1111 01257888888888644 3444332 57888888765
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=7.2e-05 Score=84.38 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=116.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|-+..++.|..++... .-.+.+.++|+.|+||||+|+.+++..--...... ..+..+.+. +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 56899999999999999653 33457889999999999999999874211110000 001111111 1110
Q ss_pred HHhc-----CCCCCCCCHHHHHHHHHH----HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHHH
Q 036168 244 KSIT-----GQNPGDLDTDQLRRILRD----RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKVA 313 (846)
Q Consensus 244 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~~ 313 (846)
..-. -........+++.+.... -..+++-++|+|+++......+..|...+...++.+.+|++|.+ ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0000 000011223333322211 12355668999999888777888888888776666777666654 3333
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
..... +...+.+.+++.++..+.+...+...+... ..+.+..|++.++|.+..+...
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22222 223689999999999988888775544322 2366788999999988654443
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.16 E-value=0.0001 Score=76.35 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=76.4
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIY 272 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 272 (846)
.+.++|++|+||||+|+.++......+......|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 688999999999999988876322111111122444432 12 222222211 12222233322 236
Q ss_pred EEEeeccCCC---------ChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCC-----CCCCcEecCCCChHHHHHH
Q 036168 273 LLVMDDVWNE---------DPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGTM-----RGTAGYKLEGLPYESCLSL 338 (846)
Q Consensus 273 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~-----~~~~~~~l~~l~~~~a~~L 338 (846)
+|+||++... ..+.++.+...+.....+.+||+++............ .-...+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 1234455666666555566777777644332221110 0123689999999999999
Q ss_pred HHHhhcc
Q 036168 339 FMKCAFK 345 (846)
Q Consensus 339 ~~~~a~~ 345 (846)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887744
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.15 E-value=3.7e-05 Score=81.84 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-.+++|.++..+.+..++... .-+.++.++|++|+||||+|+.+++.. .. ....++.+. .. .+..+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~-~~~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CR-IDFVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-cc-HHHHHHH
Confidence 367899999999999998642 335688889999999999999998742 11 123444433 11 1111111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-ChhhHHHHHHhhCCCCCCcEEEEeCCChHH-HHHhCCCC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-DPKVWDELKSLLLGSAKGSKILVTTRSNKV-ASIMGTMR 320 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~~~~~~ 320 (846)
+...... ..+.+.+-++|+||++.. .......+...+.....++++|+||..... ......
T Consensus 88 l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s-- 150 (316)
T PHA02544 88 LTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS-- 150 (316)
T ss_pred HHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh--
Confidence 1111000 001134558999999765 333445566656665667889998875431 111111
Q ss_pred CCCcEecCCCChHHHHHHHHH
Q 036168 321 GTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L~~~ 341 (846)
+...+.+...+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 123577777777777666543
No 130
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.15 E-value=7.4e-05 Score=76.24 Aligned_cols=169 Identities=17% Similarity=0.265 Sum_probs=105.6
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
..+.+.+|+.++..+..++..... .-+.+|.|+|-+|.|||.+.+++++... -..+|+++-+.++...++.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 356788999999999999866432 3456779999999999999999998541 23689999999999999999
Q ss_pred HHHHhc-CCCCCCC-CH--H---HHHHHHHH--Hh--cCceEEEEeeccCCC---ChhhHHHH---HHhhCCCCCCcEEE
Q 036168 242 IIKSIT-GQNPGDL-DT--D---QLRRILRD--RL--NGEIYLLVMDDVWNE---DPKVWDEL---KSLLLGSAKGSKIL 304 (846)
Q Consensus 242 i~~~l~-~~~~~~~-~~--~---~~~~~l~~--~l--~~kr~LlVlDdv~~~---~~~~~~~l---~~~l~~~~~gs~ii 304 (846)
|+.... ....+.. .. + .....+.+ .. +++.++||||+++.. +......+ ...++. + .-+|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~-~i~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--P-TIVI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--C-ceEE
Confidence 999984 2211111 11 1 12222222 11 246899999998542 11111222 222222 2 3344
Q ss_pred EeCCChHHHHH---hCCCCCCCcEecCCCChHHHHHHHHHh
Q 036168 305 VTTRSNKVASI---MGTMRGTAGYKLEGLPYESCLSLFMKC 342 (846)
Q Consensus 305 iTtR~~~~~~~---~~~~~~~~~~~l~~l~~~~a~~L~~~~ 342 (846)
+++-..-.... .+... ..++..+.-+.+|...++.+.
T Consensus 153 ils~~~~e~~y~~n~g~~~-i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLE-IVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCC-ceEEecCCCCHHHHHHHHhcC
Confidence 44443222222 23322 345677888999988888764
No 131
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.5e-07 Score=87.81 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC
Q 036168 718 LSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP 797 (846)
Q Consensus 718 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp 797 (846)
+|++..+.+..|+.-+..- ...+.+...+.+++|...+|..+..+..+ ..+|+|..|.+++++....+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~-----ek~se~~p~~~~LnL~~~~idswasvD~L------n~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESS-----EKGSEPFPSLSCLNLGANNIDSWASVDAL------NGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhh-----cccCCCCCcchhhhhcccccccHHHHHHH------cCCchhheeeccCCccccccc
Confidence 4666777777765333111 01111222333555655555544333221 456777777777776655433
Q ss_pred c------CCCCCCCcceee
Q 036168 798 E------SLRNLEALETLA 810 (846)
Q Consensus 798 ~------~~~~l~~L~~L~ 810 (846)
. .++.+++++.|+
T Consensus 267 ~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcceEEEEeeccceEEec
Confidence 2 124455555553
No 132
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.6e-06 Score=65.32 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=37.0
Q ss_pred CccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 600 KHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 600 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
++|++|++++|. +..+| ..|.++++|++|++++|.....-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 466777777664 44444 456667777777777666433334556677777777776664
No 133
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=6.5e-05 Score=85.57 Aligned_cols=194 Identities=15% Similarity=0.236 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|...+... .-.+.+.++|+.|+||||+|+.+++..--....+. ..+..-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 57899999999999998653 22456789999999999999998764211111000 0000000011110
Q ss_pred HHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHH
Q 036168 244 KSITG-----QNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKV 312 (846)
Q Consensus 244 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~ 312 (846)
..-.. ........+++.+ +.+.+ .+++-++|+|+++.........|...+......+.+|++|.+ ..+
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 00000 0000112222222 11211 244558999999887777788888888776666666665544 444
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHH
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTL 375 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 375 (846)
...+.. +...+.+.+++.++....+...+...+...+ .+.+..|++.++|... |+..+
T Consensus 163 ~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 433222 2346889999999988888776644433222 3567889999999764 44444
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.14 E-value=0.00012 Score=71.45 Aligned_cols=125 Identities=26% Similarity=0.341 Sum_probs=74.5
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
+.-+.++|.+...+.|.+-...--.+ .....+.+||..|.|||++++++.+....++ =.. |.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRl--Iev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRL--IEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceE--EEECHH--------
Confidence 44578999999999887644322222 3355778899999999999999987432221 111 222111
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC---CCCcEEE-EeCCChHH
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS---AKGSKIL-VTTRSNKV 312 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~ii-iTtR~~~~ 312 (846)
.-.+...+.+.++. ...||+|++||+-- .....+..|+..+..+ .|...+| .||..+.+
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 11123333344432 45789999999843 3445677888888754 2333344 45544443
No 135
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.14 E-value=6.2e-05 Score=77.32 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHhcC-------CCC--CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 165 EIIGRDEDREKIIELLMQT-------NDG--ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~-------~~~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++|.+..+++|.+..... ..+ ..+....+.++|++|+||||+|+.+++.....+......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4788887776665432110 000 1134567889999999999999999874211111111123333221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEEEeC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKILVTT 307 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 307 (846)
++ .....+. ....+.+.+... ..-+|++|+++... .+..+.+...+........+|+++
T Consensus 84 -~l----~~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DL----VGEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hh----hhhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11 1111111 112222223222 23489999996521 223344555554444344556665
Q ss_pred CChHHHH------HhCCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 308 RSNKVAS------IMGTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 308 R~~~~~~------~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
...+... .... .-...+.+++++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~s-Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRS-RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHh-ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5433211 1111 11235889999999999999887744
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.14 E-value=2.9e-05 Score=76.90 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=118.5
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEE-EEecCcccHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIW-ICVSEDFEQRQIMTK 241 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~ 241 (846)
-.+++|.+..++-|.+.+.. ....+...+|++|.|||+-|+.++...--...|.+++- .++|......-+-..
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 35789999999999999876 23568889999999999999888864322344544432 233322211100000
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHh--cCce-EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRL--NGEI-YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMG 317 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~ 317 (846)
+ .+...+........ ..++ -.+|||+++....+.|..+...+......++.|+.+.... +.....
T Consensus 109 i-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 I-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred h-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0 00000000000000 1123 3889999998899999999999988777777666554432 211111
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
. +...+..++|.+++...-+...+-..+...+ .++.+.|++.++|.-.-..++-
T Consensus 178 S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 S--RCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred h--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 1 1225888999999999988888865554433 3567899999998654444433
No 137
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.13 E-value=0.00014 Score=73.37 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh----ccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 171 EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ----EHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
+.++++.+++..+.. .....+.|+|.+|+|||++++++....-.. ..--.++.|......+...++..|+..+
T Consensus 44 ~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 445667777765432 456789999999999999999998542111 1111467778888899999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcC-ceEEEEeeccCCC------ChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCC-
Q 036168 247 TGQNPGDLDTDQLRRILRDRLNG-EIYLLVMDDVWNE------DPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGT- 318 (846)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~- 318 (846)
+.......+.......+...++. +-=+||+|++++. .+...-.....+.+.-.=+-|.+-|++.--+-....
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 86655555666555555555543 2348999999762 122222233344444444556666654322111000
Q ss_pred -CCCCCcEecCCCChHHH-HHHHHHhhcc--CCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 319 -MRGTAGYKLEGLPYESC-LSLFMKCAFK--EGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 319 -~~~~~~~~l~~l~~~~a-~~L~~~~a~~--~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
..+...+.++....++- ..|+...... -.....-...++++.|...++|+.=-+.
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 01223566666655443 4444333221 1122222446789999999999874443
No 138
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00014 Score=82.50 Aligned_cols=193 Identities=14% Similarity=0.162 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|.+..++.|.+++... .-.+.+.++|+.|+||||+|+.+++..--...-+ ..++..-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 57899999999999999763 2345677899999999999998876321100000 00000001111111
Q ss_pred HHhcCC-----CCCCCCHHHHHHHHHH----HhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC-hHHH
Q 036168 244 KSITGQ-----NPGDLDTDQLRRILRD----RLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS-NKVA 313 (846)
Q Consensus 244 ~~l~~~-----~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~-~~~~ 313 (846)
...... .......+++.+.+.. -..++.-++|+|+++......+..|...+........+|++|.. ..+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 0011122222222211 01345668899999887777788888887765555555655543 3333
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
..+.. +...+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+.
T Consensus 164 ~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22221 2346889999999999888887754443222 3567788999999876544
No 139
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00024 Score=68.99 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=111.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe-cCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH----H
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV-SEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILR----D 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 265 (846)
-+++.++|.-|.|||++++.+..... =+.++-+.+ ....+...+...++..+..+ +..........+. +
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHH
Confidence 46999999999999999995543211 111222222 34456778888888888662 2333333333333 2
Q ss_pred Hh-cCce-EEEEeeccCCCChhhHHHHHHhhCCCCCC---cEEEEeCCCh-------HHHHHhCCCCCCCc-EecCCCCh
Q 036168 266 RL-NGEI-YLLVMDDVWNEDPKVWDELKSLLLGSAKG---SKILVTTRSN-------KVASIMGTMRGTAG-YKLEGLPY 332 (846)
Q Consensus 266 ~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iiiTtR~~-------~~~~~~~~~~~~~~-~~l~~l~~ 332 (846)
.. +++| ..+++|+.+....+..+.++-+......+ -+|+.....+ .+.... ..+... |++.|++.
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~--~~R~~ir~~l~P~~~ 202 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL--EQRIDIRIELPPLTE 202 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh--hheEEEEEecCCcCh
Confidence 22 5677 99999999887777777776665432212 2344433221 011111 112224 89999999
Q ss_pred HHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 333 ESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 333 ~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
++...++..+..+.+....--..+....|.....|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999988766544321123456789999999999999887643
No 140
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.08 E-value=2e-05 Score=84.23 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=77.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.++++.++.++.+...+.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+.+..+-.+.+....
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999999864 34778899999999999999988544445677788999988877665553221
Q ss_pred HHhcCCCCCCC-CHHHHHHHHHHHh--cCceEEEEeeccCCCChhh-HHHHHHhhC
Q 036168 244 KSITGQNPGDL-DTDQLRRILRDRL--NGEIYLLVMDDVWNEDPKV-WDELKSLLL 295 (846)
Q Consensus 244 ~~l~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 295 (846)
....+-. ......+.+.... .+++++||+|++...+... +.++...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1110000 0011222222222 2467999999997766443 445544444
No 141
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00021 Score=74.76 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=116.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh-------------hccCCeeEEEEec
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV-------------QEHFKLKIWICVS 230 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 230 (846)
.+++|.+...+.+...+... .-.....++|+.|+||+++|..+++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 46899999999999999663 23578999999999999999888753210 1122333444211
Q ss_pred CcccHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEE
Q 036168 231 EDFEQRQIMTKIIKSIT--GQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKI 303 (846)
Q Consensus 231 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 303 (846)
...+-..+-..-++..+ ........++++. .+.+.+ .+.+-++|+|+++.........|...+...+ .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000001111111 1111223344433 233333 3456699999998877777888888887655 4455
Q ss_pred EEeCCC-hHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 304 LVTTRS-NKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 304 iiTtR~-~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
|++|.+ ..+...+.+ +...+.+.+++.++..+.+......... ......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHHH
Confidence 555544 344433332 2457999999999999999976521110 111357899999999766543
No 142
>PRK06620 hypothetical protein; Validated
Probab=98.01 E-value=0.0001 Score=72.66 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=82.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
+.+.|+|++|+|||+|++.+.+... ..++. .... . + +..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~--------------------~-~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFF--------------------N-E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhh--------------------c-h-------hHHh-cC
Confidence 6789999999999999998876421 11221 0000 0 0 0111 22
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEEeCCChHH-------HHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILVTTRSNKV-------ASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~-------~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
-+|++||++..+. +.+...+.. ...|..||+|++.+.. ...+.+ ..++++++++.++-..++.+.+
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~---gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKS---VLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhC---CceEeeCCCCHHHHHHHHHHHH
Confidence 4788999964322 123332221 1245689999885432 222222 2379999999999888888877
Q ss_pred ccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 344 FKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
...+...+ +++..-|++++.|.-..+.-+-..
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHHHHHHHH
Confidence 53322222 367788888888876665544333
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.00 E-value=0.00024 Score=78.24 Aligned_cols=166 Identities=17% Similarity=0.188 Sum_probs=94.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.|+|.+|+|||+|++++++.......-..++|++. .+...++...+... ...... +.++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFK----EKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHH----HHHHh-
Confidence 356889999999999999999985322211123456542 33444555544321 222232 23322
Q ss_pred eEEEEeeccCCCChh--hHHHHHHhhCCC-CCCcEEEEeCCCh-HHHHHh----C-CCCCCCcEecCCCChHHHHHHHHH
Q 036168 271 IYLLVMDDVWNEDPK--VWDELKSLLLGS-AKGSKILVTTRSN-KVASIM----G-TMRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 271 r~LlVlDdv~~~~~~--~~~~l~~~l~~~-~~gs~iiiTtR~~-~~~~~~----~-~~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
.-+|||||++..... ..+.+...+... ..|..+|+|+... .....+ . .......+.+++.+.++-.+++..
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 238999999653211 123344333221 2345678877642 211111 1 111123688999999999999999
Q ss_pred hhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 342 CAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+...+... -.++...|++.+.|.+-.+.-+
T Consensus 280 ~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 280 KAEEEGLEL---PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 885543322 2367788899998887755443
No 144
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2.2e-05 Score=82.56 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=61.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc--ccHHHHHHHHHHHhcCCCCCCCCHH--HHHH----HH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED--FEQRQIMTKIIKSITGQNPGDLDTD--QLRR----IL 263 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~----~l 263 (846)
..++|+|++|.|||||++.+++.... ++|+..+|+.+.+. .++.++++.+...+-....+..... .+.. ..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 57899999999999999999986433 37999999998866 6888999988655432222221111 1111 11
Q ss_pred HHH-hcCceEEEEeeccCC
Q 036168 264 RDR-LNGEIYLLVMDDVWN 281 (846)
Q Consensus 264 ~~~-l~~kr~LlVlDdv~~ 281 (846)
... -++++++|++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 111 268999999999954
No 145
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=1.5e-06 Score=95.87 Aligned_cols=108 Identities=27% Similarity=0.348 Sum_probs=76.2
Q ss_pred hhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCc
Q 036168 572 CISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLR 651 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 651 (846)
.+..+++|..|++.+|.+..+...+..+++|++|+|++|. ++.+.. +..++.|+.|++++|. +..++ .+..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhh
Confidence 3566778888888888888776557778888888888765 555443 6667778888888876 33333 345578888
Q ss_pred EEEeccccccccccc-CCCCCCCCEeccccccC
Q 036168 652 MFVVSTKQKSLLESG-IGCLSSLRFLMISDCEN 683 (846)
Q Consensus 652 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 683 (846)
.+++++|.+..+... ...+.+|+.+.+.+|..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 888888888766543 46777788887777643
No 146
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.2e-06 Score=96.74 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=95.9
Q ss_pred cCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 575 KSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
.+..+..+++..|.+..+-..+..+++|.+|++.+|. +..+...+..+++|++|++++|. ++.+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhe
Confidence 4556666678888887755668889999999999775 66665557889999999999977 44443 456777799999
Q ss_pred ecccccccccccCCCCCCCCEeccccccCcccchhh-ccCCCCcCEEEeecCC
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDD-IDQLCVLRTIFIADCP 706 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 706 (846)
+++|.+..+. .+..+++|+.+++++|.....- .. +..+.+|+.+.+.+|.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie-~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRIVDIE-NDELSELISLEELDLGGNS 197 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchhhhhh-hhhhhhccchHHHhccCCc
Confidence 9999998774 5667899999999987654322 21 4678888888888875
No 147
>PF14516 AAA_35: AAA-like domain
Probab=97.97 E-value=0.002 Score=68.39 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=118.3
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-----ccH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-----FEQ 235 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~ 235 (846)
.+.+.+|.|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+.... ..| .++++++..- .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCH
Confidence 34566789996667777777542 358999999999999999999875333 244 3557776542 235
Q ss_pred HHHHHHHHHHhcC----CC-C------CCCCHHHHHHHHHHHh---cCceEEEEeeccCCCCh--hhHHHHHHhhC----
Q 036168 236 RQIMTKIIKSITG----QN-P------GDLDTDQLRRILRDRL---NGEIYLLVMDDVWNEDP--KVWDELKSLLL---- 295 (846)
Q Consensus 236 ~~~~~~i~~~l~~----~~-~------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~---- 295 (846)
...++.+...+.. .. . ...+.......+.+.+ .+++.+|++|+++..-. ...+++...+.
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 5555555555431 11 0 0012223333444432 26899999999964311 11122222221
Q ss_pred CCC----CCc-EEEEeCCCh-HHHHHhCC--CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC
Q 036168 296 GSA----KGS-KILVTTRSN-KVASIMGT--MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG 367 (846)
Q Consensus 296 ~~~----~gs-~iiiTtR~~-~~~~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g 367 (846)
... ... ++++....+ ........ ......+.|++++.+|...|+.++-.. ..+ ...++|...++|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgG 231 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGG 231 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCC
Confidence 111 111 222222111 11111100 111236889999999999998876421 111 337899999999
Q ss_pred CchHHHHHhhhhcC
Q 036168 368 IPLAVRTLGSLLYG 381 (846)
Q Consensus 368 ~Plai~~~~~~l~~ 381 (846)
+|.-+..++..+..
T Consensus 232 hP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 232 HPYLVQKACYLLVE 245 (331)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999965
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00022 Score=75.07 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=98.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh-------cCCC-CCCCCHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI-------TGQN-PGDLDTDQLR 260 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-------~~~~-~~~~~~~~~~ 260 (846)
.-...+.++|+.|+||||+|+.++...--....... .+.... .-+.+...- .... .....++++.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg~C~----sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACGSCK----GCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCH----HHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 345678899999999999998887642111000000 000000 000000000 0000 0122344444
Q ss_pred HHHHHHh----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHH
Q 036168 261 RILRDRL----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESC 335 (846)
Q Consensus 261 ~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a 335 (846)
+.+...- .+++-++|+|+++.........+...+...+.++.+|+||.+.. +...+.+ +...+.+.+++.+++
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S--Rc~~~~~~~~~~~~~ 170 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS--RCQQQACPLPSNEES 170 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh--hceeeeCCCcCHHHH
Confidence 3322111 23344557799988888888888888887767788888887754 3322222 234799999999999
Q ss_pred HHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 336 LSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 336 ~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+.+..... .. ..+.+..++..++|.|.....+
T Consensus 171 ~~~L~~~~~---~~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 171 LQWLQQALP---ES----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHhcc---cC----ChHHHHHHHHHcCCCHHHHHHH
Confidence 998876531 11 1234567889999999765544
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.96 E-value=6.1e-05 Score=88.94 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh---ccC-CeeEEEEecCcccHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---EHF-KLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 239 (846)
+.++||+++++++...|... ...-+.++|++|+|||++|+.+++..... ..+ ...+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 46899999999999988653 23456799999999999999998742111 111 233432 1 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC---------ChhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE---------DPKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
+. +.... .+.++....+.+.+ +.++.+|++|+++.. +.+.-+.+++.+..+ .-++|-+|..
T Consensus 250 ---~a---~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LA---GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ---hh---hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 11 00000 01122222222222 345789999998632 112234455555432 2355555554
Q ss_pred hHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 310 NKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 310 ~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+...... ...+...+.+...+.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32211110 01123478999999999999999665
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.95 E-value=6.9e-05 Score=89.08 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEE-EEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIW-ICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 238 (846)
..++||+.++.++...|... ...-+.++|++|+||||+|+.+++...... -....+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 46899999999999988653 233556999999999999999987421110 0112233 221110
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
..+......-...+...+.+.- .+++.+|++|+++... .+.-..|++.+..+ .-++|-||..
T Consensus 255 -------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~ 325 (852)
T TIGR03345 255 -------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTW 325 (852)
T ss_pred -------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCH
Confidence 0000000001112222222221 2467999999986531 11112344544432 3466666665
Q ss_pred hHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhhccCCC-CCCcchHHHHHHHHHhhCCC
Q 036168 310 NKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQ-HKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 310 ~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~-~~~~~~~~~~~~i~~~~~g~ 368 (846)
.+...... -..+...+.+.+++.+++.+++....-.-.. +...-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 43321111 0112347999999999999997654422111 11112234455666666543
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=4.4e-07 Score=98.75 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=109.6
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccC------CceeEEEeCCCChhhhhhhhcc
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKS------QFLRVIDLSDSAIEVLSREIGN 598 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~l~~~~~~ 598 (846)
..+|++.+.+.+.+. ..+...--.+|..|+.. +.......++..+.+.. ..|.+.+.++|.+..+..++.-
T Consensus 109 ~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred cceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence 578888888777542 11222222344455443 22222233444443332 2467777788888877777888
Q ss_pred cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccc-cccCCCcEEEecccccccccccCCCCCCCCEec
Q 036168 599 LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDI-RYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLM 677 (846)
Q Consensus 599 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 677 (846)
+++|+.|+|++|. ..... .+..|++|++|||+.|. +..+|..- ..+ +|+.|++++|.++.+ .++.+|.+|+.|+
T Consensus 186 l~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccc
Confidence 8888888888876 33333 57778888888888866 55555322 233 388888888888766 3678888888888
Q ss_pred cccccCccc-chhhccCCCCcCEEEeecCCC
Q 036168 678 ISDCENLEY-LFDDIDQLCVLRTIFIADCPR 707 (846)
Q Consensus 678 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 707 (846)
++.|-.... -...+..+..|+.|+|.+|+.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 887643221 112345667788888888763
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.93 E-value=0.00037 Score=77.67 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=95.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccC--CeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHF--KLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
...+.|+|.+|+|||+|++.+++. ....+ ..++|++. .++..++...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 356899999999999999999985 33333 23445543 23344444444211 2222 233333
Q ss_pred CceEEEEeeccCCCCh--hhHHHHHHhhCC-CCCCcEEEEeCCChH--HH---HHhC-CCCCCCcEecCCCChHHHHHHH
Q 036168 269 GEIYLLVMDDVWNEDP--KVWDELKSLLLG-SAKGSKILVTTRSNK--VA---SIMG-TMRGTAGYKLEGLPYESCLSLF 339 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtR~~~--~~---~~~~-~~~~~~~~~l~~l~~~~a~~L~ 339 (846)
+.-+||+||++.... ...+.+...+.. ...|..||+||.... +. .... .......+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 234899999965321 112334333321 112445888776532 11 1111 1111237899999999999999
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 340 MKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
...+...+... -.++...|++.+.|....+.-+
T Consensus 290 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 290 KKKAEEEGIDL---PDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHcCCCC---CHHHHHHHHcCcCCCHHHHHHH
Confidence 99885433222 2367789999999988765444
No 153
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=2.5e-05 Score=82.49 Aligned_cols=161 Identities=17% Similarity=0.286 Sum_probs=89.2
Q ss_pred hhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc-cccccccCCCCCCCCEeccccccCcccchhhccCCCCcC
Q 036168 620 ICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ-KSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLR 698 (846)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 698 (846)
+..+.++..|++++| .+..+|. -..+|+.|.+++|. ++.+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 344678888888887 4777772 23468888887643 34555433 35788888888766665553 466
Q ss_pred EEEeecCC--CCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhc
Q 036168 699 TIFIADCP--RLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQ 776 (846)
Q Consensus 699 ~L~l~~~~--~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~ 776 (846)
.|.+..+. .+..+|. +|+.|.+.++.... . ......-+.+|+.|.+++|..+ .+|..+
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~---------~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~L-- 175 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPEN---------Q--ARIDNLISPSLKTLSLTGCSNI-ILPEKL-- 175 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccc---------c--cccccccCCcccEEEecCCCcc-cCcccc--
Confidence 66665432 2333433 46667665432110 0 0000111237888888887754 344332
Q ss_pred CCCCccceeecccccccc-cCCcCCCCC-CCcceeeccCCccc
Q 036168 777 GSTKTLKTLIIRNCPNFM-ALPESLRNL-EALETLAIGGCPAL 817 (846)
Q Consensus 777 ~~l~~L~~L~L~~~~~l~-~lp~~~~~l-~~L~~L~l~~c~~l 817 (846)
..+|+.|.++.|.... .++. ..+ +++ .|++.+|-.+
T Consensus 176 --P~SLk~L~ls~n~~~sLeI~~--~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 176 --PESLQSITLHIEQKTTWNISF--EGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred --cccCcEEEecccccccccCcc--ccccccc-Eechhhhccc
Confidence 2588888887653111 1111 111 344 6777776443
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00034 Score=77.13 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=95.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
...+.|+|.+|+|||+|++.+++... +.+.. .++|++. .+...++...+... ..+. +.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 34589999999999999999998532 22222 3556643 34555555554321 2222 2333333
Q ss_pred ceEEEEeeccCCC-ChhhH-HHHHHhhCC-CCCCcEEEEeCC-ChHHHHHh----CC-CCCCCcEecCCCChHHHHHHHH
Q 036168 270 EIYLLVMDDVWNE-DPKVW-DELKSLLLG-SAKGSKILVTTR-SNKVASIM----GT-MRGTAGYKLEGLPYESCLSLFM 340 (846)
Q Consensus 270 kr~LlVlDdv~~~-~~~~~-~~l~~~l~~-~~~gs~iiiTtR-~~~~~~~~----~~-~~~~~~~~l~~l~~~~a~~L~~ 340 (846)
+.-+|++||++.. +...+ +.+...+.. ...|..||+||. .+.-...+ .+ ......+.+++.+.+.-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4558999999643 11111 233333321 112446888874 33222111 11 1112367899999999999999
Q ss_pred HhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 341 KCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+.+...+... -.++...|++.+.|....+.-+-
T Consensus 274 ~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 274 KMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHH
Confidence 8875433222 23677888998888766554443
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.88 E-value=6.2e-05 Score=81.73 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=90.4
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++.|.+..+++|.+.+.-.-.. +-..++-+.|+|++|.|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 45789999999888877421100 0023457889999999999999999984 33333 222111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------ChhhHH---HHHHhhCC--CCCC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPKVWD---ELKSLLLG--SAKG 300 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~---~l~~~l~~--~~~g 300 (846)
.+. ....+. ....+...+.......+.+|+||+++.. +.+... .+...+.. ...+
T Consensus 252 eL~----~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 111110 1111222222233456789999997421 011111 22222222 1335
Q ss_pred cEEEEeCCChHHHHHhC--CCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 301 SKILVTTRSNKVASIMG--TMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 301 s~iiiTtR~~~~~~~~~--~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
..||+||...+.....- .......+.+...+.++..++|..+...
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 67888888765443321 1122357899999999999999987644
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.86 E-value=4.5e-05 Score=69.36 Aligned_cols=97 Identities=26% Similarity=0.255 Sum_probs=52.6
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceE
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG-EIY 272 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~ 272 (846)
|.|+|++|+||||+|+.+++.. . + ..+.++.+.-.+ .........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~--~-~~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G--F-PFIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T--S-EEEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c--c-cccccccccccc---------------ccccccccccccccccccccccce
Confidence 5799999999999999999853 2 1 123333222110 01111122222333332223 379
Q ss_pred EEEeeccCCCChhh-----------HHHHHHhhCCCC---CCcEEEEeCCCh
Q 036168 273 LLVMDDVWNEDPKV-----------WDELKSLLLGSA---KGSKILVTTRSN 310 (846)
Q Consensus 273 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iiiTtR~~ 310 (846)
+|++||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999996543332 344555554432 345677777763
No 157
>PRK10536 hypothetical protein; Provisional
Probab=97.85 E-value=0.00028 Score=69.90 Aligned_cols=132 Identities=15% Similarity=0.248 Sum_probs=75.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE--e--cCc-----cc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC--V--SED-----FE 234 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~--~--~~~-----~~ 234 (846)
..+.++......+..++.. ..++.+.|++|.|||+||.++..+.-..+.|+.++... + .+. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4467788888888888853 24999999999999999998877432234455333221 1 000 01
Q ss_pred HHH----HHHHHHHHhcCCCCCCCCHHHHHHHH-----------HHHhcCceE---EEEeeccCCCChhhHHHHHHhhCC
Q 036168 235 QRQ----IMTKIIKSITGQNPGDLDTDQLRRIL-----------RDRLNGEIY---LLVMDDVWNEDPKVWDELKSLLLG 296 (846)
Q Consensus 235 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~ 296 (846)
..+ .+..+...+..- . ..+.+...+ ..+++++.+ +||+|++.+.+. .++...+..
T Consensus 127 ~~eK~~p~~~pi~D~L~~~-~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR 199 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRR-L---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-h---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhh
Confidence 111 111222111100 0 001111111 125566654 999999987766 444555556
Q ss_pred CCCCcEEEEeCCCh
Q 036168 297 SAKGSKILVTTRSN 310 (846)
Q Consensus 297 ~~~gs~iiiTtR~~ 310 (846)
.+.+|++|+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 67899999987654
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00043 Score=76.07 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=88.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
..-+.|+|+.|+|||+|++.+++... .....+++++ ...+...+...+... .. ..++..++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 35688999999999999999998532 2223345554 233444444444221 11 22333333 3
Q ss_pred eEEEEeeccCCCCh--hhHHHHHHhhCC-CCCCcEEEEeCCCh-HH----HHHhCC-CCCCCcEecCCCChHHHHHHHHH
Q 036168 271 IYLLVMDDVWNEDP--KVWDELKSLLLG-SAKGSKILVTTRSN-KV----ASIMGT-MRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 271 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtR~~-~~----~~~~~~-~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
.-+|++||+..... ...+.+...+.. ...|..||+||... .. ...+.. ......+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999865321 122333333321 11345688888642 21 111111 11124788999999999999998
Q ss_pred hhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 342 CAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
.+...+...+ .++..-|+..+.|.-
T Consensus 283 k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 8855433222 255566777776554
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=0.00024 Score=85.03 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=87.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh---ccC-CeeEEEEecCcccHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---EHF-KLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 239 (846)
..++||+++++++.+.|... ...-+.++|++|+|||++|+.++...... ... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 45899999999999999653 23355799999999999999998742110 011 234443 1 111111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC--------ChhhHHHHHHhhCCCCCCcEEEEeCCChH
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE--------DPKVWDELKSLLLGSAKGSKILVTTRSNK 311 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 311 (846)
.+......-.+.+...+.+.-..++.+|++|+++.. +...-..|++.+..+ .-++|.+|...+
T Consensus 248 -------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHHH
Confidence 111111111122223333222356799999998521 111223344444432 245666666554
Q ss_pred HHHHhCC----CCCCCcEecCCCChHHHHHHHHHh
Q 036168 312 VASIMGT----MRGTAGYKLEGLPYESCLSLFMKC 342 (846)
Q Consensus 312 ~~~~~~~----~~~~~~~~l~~l~~~~a~~L~~~~ 342 (846)
....... ..+...+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 4322110 112236788888988888887654
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00023 Score=79.57 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=94.0
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|..|.|||.|++.+++.......-..++|++ ..++..++...+... ..+ .+++.+.. .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 3589999999999999999998532211112345554 334444554444211 112 22233332 2
Q ss_pred EEEEeeccCCCCh-hhH-HHHHHhhCCC-CCCcEEEEeCCChH---------HHHHhCCCCCCCcEecCCCChHHHHHHH
Q 036168 272 YLLVMDDVWNEDP-KVW-DELKSLLLGS-AKGSKILVTTRSNK---------VASIMGTMRGTAGYKLEGLPYESCLSLF 339 (846)
Q Consensus 272 ~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~iiiTtR~~~---------~~~~~~~~~~~~~~~l~~l~~~~a~~L~ 339 (846)
=+|||||+..... ..| +.+...+... ..|..|||||+... +...+.. ...+.+...+.+.-.+++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~---GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW---GLITDVQPPELETRIAIL 455 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc---CceEEcCCCCHHHHHHHH
Confidence 4889999965421 222 2333433321 23456888887531 2222222 347899999999999999
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 340 MKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+.+...+.... .+++.-|++++.+..-.+.-+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 998855443322 366777888877765555443
No 161
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00023 Score=78.56 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh---ccCCeeEEEEecCc
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---EHFKLKIWICVSED 232 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~ 232 (846)
.++.|.+..++++.+.+..+- -+- ..++-+.++|++|.|||++|+.+++..... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 557889999999888764211 011 235668999999999999999999853211 01122344444332
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCC-------hhh-----HHHHHHhhCCC--
Q 036168 233 FEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNED-------PKV-----WDELKSLLLGS-- 297 (846)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~-- 297 (846)
++ +....+. .......+....++.. .+++++|+||+++..- ... ...+...+...
T Consensus 261 ----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1110000 0001111222222221 3578999999996320 011 12333333322
Q ss_pred CCCcEEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 298 AKGSKILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 298 ~~gs~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
..+..||.||...+..... ....-...+.++..+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2344566666555432211 111223468999999999999999886
No 162
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=8.3e-07 Score=96.67 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=103.5
Q ss_pred hhccCCceeEEEeCCCChhhhh------hhhc-----------------------c---cCccCeeeccCCCcccccchh
Q 036168 572 CISKSQFLRVIDLSDSAIEVLS------REIG-----------------------N---LKHLRYLDLSGHDKIKKLPNS 619 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~------~~~~-----------------------~---l~~L~~L~L~~~~~~~~lp~~ 619 (846)
.+..++.|++|.|.+|.+...- ..+. + -..|...+.++| .+..+..+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHH
Confidence 3456788899999888765321 0010 0 012444455533 35556666
Q ss_pred hhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccC-CCCCCCCEeccccccCcccchhhccCCCCcC
Q 036168 620 ICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGI-GCLSSLRFLMISDCENLEYLFDDIDQLCVLR 698 (846)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 698 (846)
+.-++.|+.|||++|+... .. .+..|++|++|||++|.+..+|..- ..+ .|+.|.+.+|.. +.+ .++.++.+|+
T Consensus 183 Lqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhh-hhHHhhhhhh
Confidence 7778999999999987433 33 7788999999999999998776432 233 499999988643 333 5677899999
Q ss_pred EEEeecCCCCc--cccccccCCCCcCeEecccCcc
Q 036168 699 TIFIADCPRLI--SLPPAVKYLSSLETLMLEDCES 731 (846)
Q Consensus 699 ~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~ 731 (846)
.|++++|-... .+ ..+..+..|+.|.|.||+.
T Consensus 258 ~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCcc
Confidence 99999884322 12 1245577899999999864
No 163
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00079 Score=76.90 Aligned_cols=124 Identities=23% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC---CeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF---KLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~ 236 (846)
...++|.++.+..+.+.+.....| ......+....|+.|+|||.||+.++.. -| +..+-++.|+- ..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy-~E- 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY-ME- 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-HH-
Confidence 456899999999999988654321 1133567888999999999999999863 23 23333333322 11
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEeeccCCCChhhHHHHHHhhCCC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIY-LLVMDDVWNEDPKVWDELKSLLLGS 297 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (846)
+--++.+.+.+++-..-++ ...+-+..+.++| +|.||++....++....+.+.|..+
T Consensus 563 ---kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 ---KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1223334344443332222 2344555667777 8999999888888888899888764
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00033 Score=75.71 Aligned_cols=183 Identities=20% Similarity=0.202 Sum_probs=98.3
Q ss_pred CCccccchHHHHHHHHHHhcCCC-------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLMQTND-------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-.++.|.+...++|.+.+..+-. -+-..++-+.++|++|.|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 35688999888888876642110 00123577899999999999999999874 22222 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------Chh---hHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPK---VWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~ 299 (846)
..+ .....+. ....+.+.+.......+.+|++|+++.. +.. ....+...+.. ...
T Consensus 213 s~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 1111111 1122222333333457889999997531 111 11222222322 224
Q ss_pred CcEEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 300 GSKILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
+..||+||...+.... .....-...+.+...+.++..++|..+....+...+-++ .++++.+.|..
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 5678888886554322 111122346888888888888888876643332222222 45566665543
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=0.00027 Score=80.16 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=41.3
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.-.+++|-++.++++..++....-+. ...+++.|+|++|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999987643221 23468999999999999999999874
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.75 E-value=0.00056 Score=81.39 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
..+++|.++..++|.+++....-.......++.++|++|+|||++|+.+++. ....| +-++++...+..++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~--- 390 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIR--- 390 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHc---
Confidence 4568999999999988764321110023358999999999999999999884 22222 222333322222211
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChh----hHHHHHHhhCC--------C-------CCCcEE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPK----VWDELKSLLLG--------S-------AKGSKI 303 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~i 303 (846)
.. ...........+.+.+... ..++-+|+||+++..... ....+...+.. . ..+.-+
T Consensus 391 -g~--~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 391 -GH--RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred -CC--CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 00 0011111122333333332 223347899998654221 11233333321 0 022334
Q ss_pred EEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 304 LVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 304 iiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
|.||.... +....- .+...+.+.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~--~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLL--DRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHh--CCeeEEecCCCCHHHHHHHHHHHH
Confidence 45554432 111111 122378899999888888776654
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.74 E-value=0.0008 Score=78.53 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc-c---CCeeEEEEecCcccHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE-H---FKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~ 239 (846)
+.++||+.++.++...|.... ..-+.++|++|+|||++|+.++....... . .+..+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 358999999999999887632 23446899999999999999986421111 1 13334421 111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC--------ChhhH-HHHHHhhCCCCCCcEEEEeCCC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE--------DPKVW-DELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~-~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
.++. +..... +.+.....+.+.+ +.++.+|++|+++.. ..... ..+++.+..+ .-++|-+|..
T Consensus 252 -~lla---G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~i~vIgATt~ 324 (758)
T PRK11034 252 -SLLA---GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTY 324 (758)
T ss_pred -HHhc---ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--CeEEEecCCh
Confidence 1111 111111 1122222222222 345689999999632 11122 2234444332 3456656655
Q ss_pred hHHHHHhCC----CCCCCcEecCCCChHHHHHHHHHhh
Q 036168 310 NKVASIMGT----MRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 310 ~~~~~~~~~----~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+....... ..+...+.+...+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443221110 1123479999999999999988764
No 168
>CHL00176 ftsH cell division protein; Validated
Probab=97.72 E-value=0.00073 Score=77.39 Aligned_cols=179 Identities=19% Similarity=0.281 Sum_probs=97.8
Q ss_pred CccccchHHHHHHHHHH---hcCCC----CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELL---MQTND----GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L---~~~~~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.+++|.++..+++.+.+ ..... +. ..++-+.++|++|.|||++|+.++... . .-|+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----
Confidence 56888887666665543 32211 11 235578999999999999999998732 1 112333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC----------hhhHHH-HHHhh---CC--CCCC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED----------PKVWDE-LKSLL---LG--SAKG 300 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~g 300 (846)
++. ....+ .....+...+.......+.+|++||++... ...++. +...+ .. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11101 112233344444456778999999995321 112222 22222 22 2345
Q ss_pred cEEEEeCCChHHHHH-h-CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC
Q 036168 301 SKILVTTRSNKVASI-M-GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG 367 (846)
Q Consensus 301 s~iiiTtR~~~~~~~-~-~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g 367 (846)
..||.||...+.... . ....-...+.+...+.++-.+++..++...... + ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCC
Confidence 567777776544321 1 111223578888889999999998887442211 1 1234677777777
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=0.00023 Score=65.58 Aligned_cols=88 Identities=22% Similarity=0.118 Sum_probs=47.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE- 270 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 270 (846)
..+.|+|++|+||||+|+.++...... ...++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998843222 123555544433322211111 111111112222233333444444443
Q ss_pred eEEEEeeccCCCC
Q 036168 271 IYLLVMDDVWNED 283 (846)
Q Consensus 271 r~LlVlDdv~~~~ 283 (846)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997654
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.69 E-value=0.00025 Score=72.55 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=59.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|.+|+|||.||.++++... .....+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 4588999999999999999998532 2233455654 3445555544432211 112222 223333333
Q ss_pred EEEEeeccCCCChhhHH--HHHHhhCC-CCCCcEEEEeCCCh
Q 036168 272 YLLVMDDVWNEDPKVWD--ELKSLLLG-SAKGSKILVTTRSN 310 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iiiTtR~~ 310 (846)
||||||+.......|. .+...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 8999999544333343 34444432 13455699998754
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0019 Score=67.40 Aligned_cols=176 Identities=13% Similarity=0.138 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----------------cCCeeEEEEecCcccH
Q 036168 172 DREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----------------HFKLKIWICVSEDFEQ 235 (846)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----------------~f~~~~wv~~~~~~~~ 235 (846)
..+++...+... .-+..+.++|+.|+||+++|..+++..--.. ..+...|+.......
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~- 85 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT- 85 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-
Confidence 345566666442 3356788999999999999988875321110 011122221000000
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
+........++++.+.. +.+ .+++-++|+|+++......-..|...+.....++.+|++|.+.
T Consensus 86 -----------~~k~~~~I~idqIR~l~-~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 86 -----------GDKLRTEIVIEQVREIS-QKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred -----------cccccccccHHHHHHHH-HHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 00000112233333322 222 3455699999998777777777888888777788777777654
Q ss_pred -HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 311 -KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 311 -~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
.+...+.+ +...+.+.+.+.+++.+.+.... . + ...+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrS--RCq~i~~~~~~~~~~~~~L~~~~----~--~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRS--RCQRLEFKLPPAHEALAWLLAQG----V--S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHh--hheEeeCCCcCHHHHHHHHHHcC----C--C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 33333322 23478899999999988887531 1 1 1235678999999998665443
No 172
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0011 Score=70.30 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=93.4
Q ss_pred cccc-chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 165 EIIG-RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 165 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.++| -+..++.+...+... .-+....++|+.|+||||+|+.+.+..--....... .+..+. ..+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~----~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCT----NCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCH----HHHHHh
Confidence 3566 666777777777542 335677999999999999998887532111100000 000000 000000
Q ss_pred HHhc------CCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-H
Q 036168 244 KSIT------GQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-V 312 (846)
Q Consensus 244 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~ 312 (846)
..-. .........+++.+.+... ..+.+=++|+|+++.........|...+...++++.+|++|.++. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000112333333333221 234456799999988777777888888888777888887776643 3
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHH
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
...+.+ +...+.+.+++.++..+.+..
T Consensus 154 l~TIrS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHh--hceeeeCCCCCHHHHHHHHHH
Confidence 332222 235799999999999887765
No 173
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00042 Score=76.78 Aligned_cols=167 Identities=17% Similarity=0.251 Sum_probs=93.0
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
.+.+-+|.++-.++|.++|.-..-...-+-.+++++|++|+|||.|++.+++ .....| +-+++++-.+..++---
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc
Confidence 4567899999999999998533211113447999999999999999999998 344444 33455555444332100
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh----hhHHHHHHhhCCCC-------------CCcE-E
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP----KVWDELKSLLLGSA-------------KGSK-I 303 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~gs~-i 303 (846)
= ..-.+... ..+.+.+++ .+.++-|++||.++.... +--..+...|.+.. .=|. +
T Consensus 396 R-----RTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 R-----RTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred c-----ccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 0 00011111 223333332 255678999999853211 00112333332211 1133 3
Q ss_pred EEeCCC-hH-H-HHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 304 LVTTRS-NK-V-ASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 304 iiTtR~-~~-~-~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.|||-| -+ + +.....+. ++++.+.+++|-.++-.++.
T Consensus 469 FiaTANsl~tIP~PLlDRME---iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRME---VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhccee---eeeecCCChHHHHHHHHHhc
Confidence 344443 22 2 22333333 89999999999888777665
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00069 Score=81.39 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=85.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 239 (846)
..++||+.++.++...|... ....+.++|++|+|||++|+.++....... -....+|.. +...++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 45899999999999999653 234556899999999999999887421110 012233321 111111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLN-GEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
. +......-...+...+...-+ +++.+|++|+++... .+.-+.+++.+.. ..-++|.+|...
T Consensus 242 ----a---~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 ----A---GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLD 312 (852)
T ss_pred ----h---cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHH
Confidence 0 111111111122223322222 468999999996421 1112223333321 124566566555
Q ss_pred HHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 311 KVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 311 ~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
+...... ...+...+.+...+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4322111 11123468888889999999887664
No 175
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0031 Score=65.86 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh------
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI------ 246 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l------ 246 (846)
-+.+...+... .-.....++|+.|+||+++|+.++...--....... .+... ..-+.+...-
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEE
Confidence 34566666542 334677899999999999999887532110000000 00000 0001110000
Q ss_pred -cCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCC
Q 036168 247 -TGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMR 320 (846)
Q Consensus 247 -~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~ 320 (846)
.........++++.+..... ..+++=++|+|+++.........|...+...++++.+|++|.++ .+...+.+
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-- 156 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-- 156 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh--
Confidence 00011123444444322221 13556688899998888888888999998877888888877765 33333222
Q ss_pred CCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 321 GTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
+...+.+.+++.++..+.+..... . . ...+...+..++|.|..+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~---~--~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS---A--E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc---c--C---hHHHHHHHHHcCCCHHHH
Confidence 234799999999999988887541 1 1 123556788999999644
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.59 E-value=0.00083 Score=80.33 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEE-EEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIW-ICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 238 (846)
..++||+.++.++++.|.... ...+.++|++|+||||+|+.++....... -....+| +.++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 458999999999999996632 33566999999999999999987421100 0122222 22211 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
+ . +......-.+.+...+.+.. .+.+.+|++|+++... .+.-+.+++.+..+ .-++|-+|..
T Consensus 246 ~----a---g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt~ 316 (857)
T PRK10865 246 V----A---GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTL 316 (857)
T ss_pred h----h---ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCCC
Confidence 1 0 00000111122222332221 2567999999986431 11222334443322 3456666665
Q ss_pred hHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 310 NKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 310 ~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+...... ...+...+.+..-+.++...++....
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 54322111 11122256677668888888887654
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0023 Score=65.20 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=104.5
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++=|-++.+++|.+.+.-+-.. +=..++=|.+||++|.|||-||++|++. ....| +.+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 45667888888888876433210 0133567889999999999999999993 44333 333222
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CceEEEEeeccCCC-----------Chhh---HHHHHHhhCCCC--C
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLN-GEIYLLVMDDVWNE-----------DPKV---WDELKSLLLGSA--K 299 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~~~--~ 299 (846)
++.+...+. -..+.+.+.+.-+ ..+..|++|.++.. +.+. .-+|...+..+. .
T Consensus 220 ----ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 222222222 1234444444444 35789999988531 1122 223444445443 3
Q ss_pred CcEEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 300 GSKILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
.-|||..|...++... .....-++.++++.=+.+.-.++|.-++..-....+-+++ .+++.|.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCc
Confidence 5689999987765532 2233335678887555565677888887544433333444 5566666544
No 178
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=8.6e-05 Score=51.93 Aligned_cols=35 Identities=37% Similarity=0.506 Sum_probs=21.6
Q ss_pred CceeEEEeCCCChhhhhhhhcccCccCeeeccCCC
Q 036168 577 QFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHD 611 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~ 611 (846)
++|++|++++|.++.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35666666666666666666666666666666654
No 179
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.57 E-value=7e-05 Score=72.53 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=21.6
Q ss_pred HHHhhccCCceeEEEeCCCChh-hhh----hhhcccCccCeeeccCC
Q 036168 569 LTSCISKSQFLRVIDLSDSAIE-VLS----REIGNLKHLRYLDLSGH 610 (846)
Q Consensus 569 ~~~~~~~~~~L~~L~L~~~~~~-~l~----~~~~~l~~L~~L~L~~~ 610 (846)
+...+-+||.|+..+||.|.+. ..| ..+..-+.|.+|.+++|
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3444555666666666666554 222 22344455666666544
No 180
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.57 E-value=0.0023 Score=70.77 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=128.6
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchh---hh---ccCCeeEEEEecCcccH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQS---VQ---EHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~ 235 (846)
.|..+-+|+.+..+|...+...-..+ ..-+.+.|.|.+|.|||+.+..|.+... .+ ..|+ .+.|+.-.-..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~-~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQ-GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 56678899999999988876543221 2345999999999999999999987432 11 2343 345555556679
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----CceEEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEEeCC-
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN-----GEIYLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILVTTR- 308 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR- 308 (846)
.+++..|...+.+... ......+.+..++. .+..++++|+++..-...-+-+..+|.| ..++|+++|-+=
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 9999999999876533 22233344444442 3568899998743211223445666665 457787665432
Q ss_pred -ChHHHH-----HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 309 -SNKVAS-----IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 309 -~~~~~~-----~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
..+... .....-+...+...|.+.++-.++...+..+...-.....+-+|+.|+.-.|-.-.|+.+.-++.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111 11111123467888888888888777766443221222334455666666666666665554443
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.56 E-value=0.00045 Score=81.25 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=90.7
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
.+.+.+|.++..++|.+++............++.++|++|+||||+|+.++.. ....| +-+..+...+..++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccc
Confidence 35678999999999998886421111123458999999999999999999873 22222 22333433333222111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhh----HHHHHHhhCCC---------------CCCcE
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKV----WDELKSLLLGS---------------AKGSK 302 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ 302 (846)
- ... .......+...+... ....-+++||.++...... ...+...+... -...-
T Consensus 395 ~-~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 R-RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred h-hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 1 000 011112233333322 2234578999986543221 24455544321 12334
Q ss_pred EEEeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 303 ILVTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 303 iiiTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
+|.|+....+....-. +...+.+.+++.++-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~--R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLD--RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhc--ceeeeecCCCCHHHHHHHHHHhh
Confidence 4455544332222111 22368889999988888777665
No 182
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.56 E-value=0.002 Score=65.98 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=60.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH------------HHHhcCC-C--CCCCCH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI------------IKSITGQ-N--PGDLDT 256 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------------~~~l~~~-~--~~~~~~ 256 (846)
+.|.|.|++|+|||++|+.+++ ... . ..+++++....+..+++... ....... . ...+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg--~-~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRD--R-PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhC--C-CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 3567899999999999999986 222 1 23455555555544443221 1100000 0 000000
Q ss_pred HHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC----------------CCCcEEEEeCCCh
Q 036168 257 DQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS----------------AKGSKILVTTRSN 310 (846)
Q Consensus 257 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iiiTtR~~ 310 (846)
. .+.... .+...+++|++...+.+.+..|...+... .++.+||+|+...
T Consensus 97 g----~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 97 N----RLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred c----hHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 0 111111 23468999999887777777777766421 1356788888753
No 183
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=4.6e-05 Score=87.79 Aligned_cols=129 Identities=25% Similarity=0.227 Sum_probs=73.4
Q ss_pred CccCeeeccCCCccc-ccchhhh-cCCCCcEEecCCcCCC-ccccccccccCCCcEEEecccccccccccCCCCCCCCEe
Q 036168 600 KHLRYLDLSGHDKIK-KLPNSIC-ELHSLQTVCLGGCREL-EELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFL 676 (846)
Q Consensus 600 ~~L~~L~L~~~~~~~-~lp~~~~-~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 676 (846)
.+|++|+++|..... .-|..++ .||+|++|.+++-... ..+-.-..++++|..||+|++.++.+ .+++.|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777654332 2233333 3677777777653221 11223335677777777777777766 577777777777
Q ss_pred ccccccCcc-cchhhccCCCCcCEEEeecCCCCccc------cccccCCCCcCeEecccC
Q 036168 677 MISDCENLE-YLFDDIDQLCVLRTIFIADCPRLISL------PPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 677 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l------~~~~~~l~~L~~L~l~~~ 729 (846)
.+.+-.... .....+.+|++|+.||+|.-.....- -+.-..+|+|+.||.|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 766543322 12245567777777777764332210 111234677777777764
No 184
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=7.5e-06 Score=70.79 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=51.8
Q ss_pred eeEEEeCCCChhhhhhh---hcccCccCeeeccCCCcccccchhhhc-CCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 579 LRVIDLSDSAIEVLSRE---IGNLKHLRYLDLSGHDKIKKLPNSICE-LHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~---~~~l~~L~~L~L~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
+..++|++|.+-.+++. +....+|+..+|++|. .+.+|+.|.. ++.+++|++++|. +..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 34455555554433332 3334455555565543 4455544443 3355556665543 555555555566666666
Q ss_pred ecccccccccccCCCCCCCCEeccccc
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDC 681 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~ 681 (846)
++.|.+...|..+..|.+|-.|+..+|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC
Confidence 666655555555554555555554443
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.0015 Score=78.18 Aligned_cols=139 Identities=20% Similarity=0.367 Sum_probs=78.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCC--CC-cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG--ES-ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~--~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.+..++.+...+.....+ .+ ....++.++|+.|+|||++|+.+++.. ...-...+.++++.-.. ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~-- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH-- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh--
Confidence 456899999999998888643211 00 123578899999999999999998632 11112234444432211 11
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-eEEEEeeccCCCChhhHHHHHHhhCCC----C-------CCcEEEEeC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNGE-IYLLVMDDVWNEDPKVWDELKSLLLGS----A-------KGSKILVTT 307 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iiiTt 307 (846)
....+.+.+++....+. ...+.+.++.+ .-+|+||++.......+..+...+..+ + ..+-||+||
T Consensus 642 --~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 642 --SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred --hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 12223232222111111 11222333222 359999999888888888888877543 1 223377787
Q ss_pred CC
Q 036168 308 RS 309 (846)
Q Consensus 308 R~ 309 (846)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 75
No 186
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.51 E-value=0.0015 Score=78.64 Aligned_cols=137 Identities=23% Similarity=0.386 Sum_probs=80.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCC--CC-cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG--ES-ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~--~~-~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.+..++.+...+.....+ .+ ....++.++|++|+|||++|+.+.... ...-...+.++++.-.+. ...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~-~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEK-HSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhccc-chH
Confidence 456899999999999988754211 00 123578899999999999999998732 111122344444432221 111
Q ss_pred HHHHHHhcCCCCCCC---CHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEE
Q 036168 240 TKIIKSITGQNPGDL---DTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILV 305 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iii 305 (846)
..+.+.+++-. ....+...++ +....+|+||++.......+..|...+..+. ..+-||+
T Consensus 641 ----~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 ----ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred ----HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 22222222211 1122333332 1233599999999888888888888875431 2344777
Q ss_pred eCCC
Q 036168 306 TTRS 309 (846)
Q Consensus 306 TtR~ 309 (846)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7765
No 187
>PRK08181 transposase; Validated
Probab=97.48 E-value=0.00064 Score=69.12 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=55.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|++|+|||.||..+.+.. ......++|++ ..+++..+.... ...+.......+. +.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~-----~~~~~~~~l~~l~-----~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVAR-----RELQLESAIAKLD-----KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHH-----hCCcHHHHHHHHh-----cC
Confidence 458999999999999999998742 22222345554 344555543322 1112222222221 23
Q ss_pred EEEEeeccCCCChhhH--HHHHHhhCCCCCCcEEEEeCCCh
Q 036168 272 YLLVMDDVWNEDPKVW--DELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~--~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
=|||+||+.......| +.+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4999999964432222 23444444321123588888764
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0037 Score=66.53 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=82.5
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
....+.|||..|.|||.|++++.+. ..........+.+ +.+....+++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 3568999999999999999999984 3334432222222 233444444444322 1123344444
Q ss_pred ceEEEEeeccCCCC--hhhHHHHHHhhCC-CCCCcEEEEeCCCh---------HHHHHhCCCCCCCcEecCCCChHHHHH
Q 036168 270 EIYLLVMDDVWNED--PKVWDELKSLLLG-SAKGSKILVTTRSN---------KVASIMGTMRGTAGYKLEGLPYESCLS 337 (846)
Q Consensus 270 kr~LlVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~iiiTtR~~---------~~~~~~~~~~~~~~~~l~~l~~~~a~~ 337 (846)
.-=++++||++... ...-+.+...+.. ...|-.||+|++.. ++.....+. ..+++.+.+.+....
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPDDETRLA 251 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCCHHHHHH
Confidence 22389999996521 1112333333332 12233899999653 233333332 389999999999999
Q ss_pred HHHHhhccCCCC
Q 036168 338 LFMKCAFKEGQH 349 (846)
Q Consensus 338 L~~~~a~~~~~~ 349 (846)
++.+.+...+..
T Consensus 252 iL~kka~~~~~~ 263 (408)
T COG0593 252 ILRKKAEDRGIE 263 (408)
T ss_pred HHHHHHHhcCCC
Confidence 999977555444
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0076 Score=62.84 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh------------------ccCCeeEEEEecCccc
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ------------------EHFKLKIWICVSEDFE 234 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~~~~~~ 234 (846)
.+++...+... .-...+.++|+.|+||+++|+.++...--. +..+...|+.-.
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---- 82 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE---- 82 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC----
Confidence 45566666442 345688899999999999998887531100 001111122110
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 235 QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
.......++++.+. .+.+ .+.+=++|+|+++.........+...+...++++.+|++|.+
T Consensus 83 --------------~~~~~I~vdqiR~l-~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 83 --------------KEGKSITVEQIRQC-NRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred --------------cCCCcCCHHHHHHH-HHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 00112344444332 2222 244558999999888888888899999887778877777666
Q ss_pred h-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 310 N-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+ .+...+.+ +...+.+.+++.+++.+.+.... . + .+..++..++|.|+....+
T Consensus 148 ~~~lLpTI~S--RCq~~~~~~~~~~~~~~~L~~~~----~--~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVS--RCQQWVVTPPSTAQAMQWLKGQG----I--T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHh--cceeEeCCCCCHHHHHHHHHHcC----C--c-----hHHHHHHHcCCCHHHHHHH
Confidence 4 34444333 23478999999999998886531 1 1 1356789999999877555
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.46 E-value=0.0018 Score=60.79 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh------------------ccCCeeEEEEe
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ------------------EHFKLKIWICV 229 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 229 (846)
|-+...+.|.+.+... .-+..+.++|+.|+||+|+|..+++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 5566777788877653 335578999999999999998887532111 11222333322
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEE
Q 036168 230 SEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKIL 304 (846)
Q Consensus 230 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 304 (846)
... ......+++. .+.+.+ .++.=++|+||++....+....|...+...+.++.+|
T Consensus 76 ~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 111 0022333333 222222 2345689999999888889999999998888899999
Q ss_pred EeCCChH-HHHHhCCCCCCCcEecCCC
Q 036168 305 VTTRSNK-VASIMGTMRGTAGYKLEGL 330 (846)
Q Consensus 305 iTtR~~~-~~~~~~~~~~~~~~~l~~l 330 (846)
++|++.. +.....+ +...+.+.++
T Consensus 137 L~t~~~~~il~TI~S--Rc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRS--RCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHT--TSEEEEE---
T ss_pred EEECChHHChHHHHh--hceEEecCCC
Confidence 9888764 3333322 1235555554
No 191
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=5.6e-05 Score=74.19 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=123.6
Q ss_pred hcCCCCcEEecCCcCCC--ccccccccccCCCcEEEecccccccccccC-CCCCCCCEeccccccC-cccchhhccCCCC
Q 036168 621 CELHSLQTVCLGGCREL--EELPKDIRYLVNLRMFVVSTKQKSLLESGI-GCLSSLRFLMISDCEN-LEYLFDDIDQLCV 696 (846)
Q Consensus 621 ~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~ 696 (846)
..++.++.|||.+|... +.+...+.+||.|+.|+++.|.+......+ .-+.+|++|-|.+... +......+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 35788999999997632 223445578999999999999887433333 3456888888877432 2334455677888
Q ss_pred cCEEEeecCCCCcc-c-cccccC-CCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCC-Cch
Q 036168 697 LRTIFIADCPRLIS-L-PPAVKY-LSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLE-LPQ 772 (846)
Q Consensus 697 L~~L~l~~~~~~~~-l-~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~-l~~ 772 (846)
++.|.++.|+.-.- + ...... -+.+++|.+..|.... +..... ......++..+.+..||--+. -..
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~---w~~~~~------l~r~Fpnv~sv~v~e~PlK~~s~ek 218 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL---WLNKNK------LSRIFPNVNSVFVCEGPLKTESSEK 218 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH---HHHHHh------HHhhcccchheeeecCcccchhhcc
Confidence 88888888742110 0 011111 2466777777774321 110000 001122455555555432110 111
Q ss_pred hhhcCCCCccceeecccccccc--cCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCC
Q 036168 773 WLLQGSTKTLKTLIIRNCPNFM--ALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDES 844 (846)
Q Consensus 773 ~~~~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~ 844 (846)
.. ..+|.+-.|+|+.+++-. ++ +.+..++.|..|.++++|..... ..+...+.-|+.+++++++|.+
T Consensus 219 ~s--e~~p~~~~LnL~~~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l--~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 219 GS--EPFPSLSCLNLGANNIDSWASV-DALNGFPQLVDLRVSENPLSDPL--RGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cC--CCCCcchhhhhcccccccHHHH-HHHcCCchhheeeccCCcccccc--cCCcceEEEEeeccceEEecCc
Confidence 12 456777788888775432 22 24678999999999999965532 1123344468899999998865
No 192
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00044 Score=75.73 Aligned_cols=188 Identities=14% Similarity=0.205 Sum_probs=114.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc--cCCeeEEEEecCcccHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE--HFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
+++||-+.-...|...+.... -..--...|+-|+||||+|+-++...--.+ ... .+..+. ..+.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~----~Ck~ 81 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCI----SCKE 81 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhh----hhHh
Confidence 457999999999999997642 234456789999999999998886321110 010 111111 1111
Q ss_pred HHHH-----hcCCCCCCCCHHHHHHHHHHHh----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-
Q 036168 242 IIKS-----ITGQNPGDLDTDQLRRILRDRL----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK- 311 (846)
Q Consensus 242 i~~~-----l~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~- 311 (846)
|-.. +.-+......++++.+.+.+.. +++-=+.|+|.|+......|..|...+...++....|+.|++.+
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 1111 0000011123333333332222 34445899999999888899999988887777777777666643
Q ss_pred HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch
Q 036168 312 VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL 370 (846)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (846)
+...+-+ +...|.++.++.++-...+...+...+... ..+....|++..+|...
T Consensus 162 ip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 162 IPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred Cchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 3322221 234799999999999999888885544432 33566778888877554
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.0025 Score=75.44 Aligned_cols=123 Identities=21% Similarity=0.349 Sum_probs=71.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.++.++.+...+.....+ ......++.++|++|+|||+||+.++... +...+.++.++-.+.. ..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~-~~ 526 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH-TV 526 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc-cH
Confidence 345789998889888887643211 00123468899999999999999998732 2234455544322211 11
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEeeccCCCChhhHHHHHHhhCC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNG-EIYLLVMDDVWNEDPKVWDELKSLLLG 296 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~ 296 (846)
..+.+..++....++ ...+.+.++. ..-+++||+++....+.+..|...+..
T Consensus 527 ----~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 527 ----SRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred ----HHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 112122221111111 1122333333 345999999998888888888887764
No 194
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=3.7e-05 Score=87.56 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=36.3
Q ss_pred eEEccCCCCCC-CCchhhhcCCCCccceeecccccccccCCc-CCCC-CCCcceeeccCCccccccCC
Q 036168 758 KLFVEGLPPLL-ELPQWLLQGSTKTLKTLIIRNCPNFMALPE-SLRN-LEALETLAIGGCPALSERCK 822 (846)
Q Consensus 758 ~l~l~~~~~l~-~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~-l~~L~~L~l~~c~~l~~~~~ 822 (846)
.+.+.+|+.++ .+.... .....|+.|+++.|...+.--- .... +.+++.+++.+|+.+.....
T Consensus 380 ~~~l~gc~~l~~~l~~~~--~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRL--CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHHhcCCcccchHHHHHh--ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 34556676662 222111 3344488888888866543211 1111 67788888999887775543
No 195
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.42 E-value=0.0008 Score=76.09 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=90.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh--hccCC-eeEEEEecC---cccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV--QEHFK-LKIWICVSE---DFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~--~~~f~-~~~wv~~~~---~~~~~~ 237 (846)
.+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.... ...|. ..-|+.+.. ..+.+.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 36899999999998877542 2346789999999999999999763211 11232 122333322 122222
Q ss_pred HHHHHHHHhcCC------CCCCCCHHH-HHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-------------
Q 036168 238 IMTKIIKSITGQ------NPGDLDTDQ-LRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS------------- 297 (846)
Q Consensus 238 ~~~~i~~~l~~~------~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------- 297 (846)
+...++...... ........+ ....+. +...-.|++|++...+......|...+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 222222111000 000000000 000010 223468999999888877777777655321
Q ss_pred ---------------CCCcEEEEe-CCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 298 ---------------AKGSKILVT-TRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 298 ---------------~~gs~iiiT-tR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
....++|.+ |+++. +...... +...+.+.+++.+|-.+++...+..
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHH
Confidence 112366654 44432 1111111 1236788999999988888887744
No 196
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=3.6e-05 Score=87.60 Aligned_cols=39 Identities=26% Similarity=0.545 Sum_probs=22.0
Q ss_pred eeeccccccc-ccCCcCCCCCCCcceeeccCCccccccCC
Q 036168 784 TLIIRNCPNF-MALPESLRNLEALETLAIGGCPALSERCK 822 (846)
Q Consensus 784 ~L~L~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 822 (846)
.+.+.+|+.+ ..+.........|+.|+++.|..++....
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccch
Confidence 3555666555 22222223333488999999987765433
No 197
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.40 E-value=0.0025 Score=72.03 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=94.7
Q ss_pred CCccccchHHHHHHHHHHh---cCC----CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLM---QTN----DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~---~~~----~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-.+++|.++..+++.+.+. ... -+. ..++-+.++|++|.|||++|+.++... ... ++.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~--- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS--- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH---
Confidence 3568898877766665443 110 011 334568899999999999999998732 111 2222211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC----------hhhHHH----HHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED----------PKVWDE----LKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~ 299 (846)
++. ....+ .....+...+.......+.+|++|+++... ...+.. +...+.. ...
T Consensus 123 -~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 -DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred -HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11111 122233334444444567899999985421 111222 2222221 223
Q ss_pred CcEEEEeCCChHHHH-Hh-CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 300 GSKILVTTRSNKVAS-IM-GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 300 gs~iiiTtR~~~~~~-~~-~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
+..||.||..++... .. ....-...+.+...+.++-.++|..+......... .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCC
Confidence 445666776554222 11 11122346888888888888888877643222111 1234777777763
No 198
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0011 Score=69.98 Aligned_cols=180 Identities=13% Similarity=0.074 Sum_probs=104.5
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHH-------
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKS------- 245 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------- 245 (846)
-+++...+... .-..-+.++|+.|+||+++|..++...--...-+.. .++.+. .-+.+...
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C~----sC~~~~~g~HPD~~~ 78 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHCR----GCQLMQAGTHPDYYT 78 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCH----HHHHHHcCCCCCEEE
Confidence 45566666542 345678899999999999998887532100000000 000000 00000000
Q ss_pred hcCCCC-CCCCHHHHHHHHHHHh----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCC
Q 036168 246 ITGQNP-GDLDTDQLRRILRDRL----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTM 319 (846)
Q Consensus 246 l~~~~~-~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~ 319 (846)
+..... ....++++.+.....- .+++=++|+|+++......-..|...+...++++.+|++|.+.+ +...+.+
T Consensus 79 i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 79 LTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS- 157 (334)
T ss_pred EecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-
Confidence 000000 1234454444332211 35666999999988877788888999988777888777777643 4433332
Q ss_pred CCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 320 RGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 320 ~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
+...+.+.+++.+++.+.+.... +. + .+.+..++..++|.|.....
T Consensus 158 -RCq~~~~~~~~~~~~~~~L~~~~---~~--~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 158 -RCRLHYLAPPPEQYALTWLSREV---TM--S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred -ccccccCCCCCHHHHHHHHHHcc---CC--C---HHHHHHHHHHcCCCHHHHHH
Confidence 23468999999999988876532 11 1 13367889999999965433
No 199
>PRK12377 putative replication protein; Provisional
Probab=97.39 E-value=0.0004 Score=69.68 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=56.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.|+|.+|+|||+||.++++... .....++++++ .+++..+-..... ....... .+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~------~~l~~~l~~~~~~----~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTV------PDVMSRLHESYDN----GQSGEKF----LQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEH------HHHHHHHHHHHhc----cchHHHH----HHHh-cC
Confidence 35789999999999999999998533 22333566644 3444444333211 1111222 2222 24
Q ss_pred eEEEEeeccCCCChhhH--HHHHHhhCCC-CCCcEEEEeCCC
Q 036168 271 IYLLVMDDVWNEDPKVW--DELKSLLLGS-AKGSKILVTTRS 309 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtR~ 309 (846)
--||||||+.......| +.+...+... ...--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 46999999954433333 3344444332 222337888764
No 200
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00024 Score=49.69 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=15.6
Q ss_pred ccCeeeccCCCcccccchhhhcCCCCcEEecCCcC
Q 036168 601 HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCR 635 (846)
Q Consensus 601 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 635 (846)
+|++|++++|. ++.+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 44555555442 34444445555555555555543
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.32 E-value=0.00085 Score=64.71 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc--cc----HHH----
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED--FE----QRQ---- 237 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~----~~~---- 237 (846)
.+..+.....+.|.. ..++.+.|++|.|||.||.+.+.+.-..+.|+.++++.-.-. .+ +-+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 345566667777753 458999999999999999888766545578887776632111 00 001
Q ss_pred ---HHHHHHHHhcCCCCCCCCHHHHHHHH------HHHhcCc---eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE
Q 036168 238 ---IMTKIIKSITGQNPGDLDTDQLRRIL------RDRLNGE---IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV 305 (846)
Q Consensus 238 ---~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii 305 (846)
.+..+...+..- ......+.+.+.= ..+++++ ..++|+|++.+.... +++..+-..+.||+||+
T Consensus 76 ~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE---ELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHH---HHHHHHcccCCCcEEEE
Confidence 111112122111 1112222222110 1244554 469999999877654 45556667788999999
Q ss_pred eCCChH
Q 036168 306 TTRSNK 311 (846)
Q Consensus 306 TtR~~~ 311 (846)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 876543
No 202
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.32 E-value=0.031 Score=59.48 Aligned_cols=205 Identities=19% Similarity=0.222 Sum_probs=122.4
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHH-HHHhcchhhhccCCeeEEEEecCc---ccHHHHHHHHHH
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALA-KLVYNDQSVQEHFKLKIWICVSED---FEQRQIMTKIIK 244 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 244 (846)
|.+..++|..||.+.. -.+|.|.|+-|.||+.|+ .++.++. +.+..+.|.+- .+....+..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHH
Confidence 6678899999998742 359999999999999999 6666542 22555555332 223334444443
Q ss_pred Hh-----------------------cCCCCC--CCCHHHHHHHHH-------H-------------------Hh---cCc
Q 036168 245 SI-----------------------TGQNPG--DLDTDQLRRILR-------D-------------------RL---NGE 270 (846)
Q Consensus 245 ~l-----------------------~~~~~~--~~~~~~~~~~l~-------~-------------------~l---~~k 270 (846)
++ .|+..+ .....++...+. + ++ ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 33 222211 112222222221 1 11 123
Q ss_pred eEEEEeeccCCCC---hhhHHHHHHh---hCCCCCCcEEEEeCCChHHHHHhCC---CCCCCcEecCCCChHHHHHHHHH
Q 036168 271 IYLLVMDDVWNED---PKVWDELKSL---LLGSAKGSKILVTTRSNKVASIMGT---MRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 271 r~LlVlDdv~~~~---~~~~~~l~~~---l~~~~~gs~iiiTtR~~~~~~~~~~---~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
+-+||+|+..... ...|+.+... +- ..+=.+||+.|-+......... ....+.+.+...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999985432 2233333321 22 2344579988887654443321 12345789999999999999998
Q ss_pred hhccCCCC------------CC-----cchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHH
Q 036168 342 CAFKEGQH------------KH-----PNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEH 386 (846)
Q Consensus 342 ~a~~~~~~------------~~-----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 386 (846)
+....... .. +....-....++..||-=.-+..+++.++...++.
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 87543110 00 12334456888999999999999999998876554
No 203
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0021 Score=61.67 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=74.0
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
+=..++|.+...+.|.+--..-..| ...--|.+||.-|+|||.|++++.+ .+.+.+-..+ .+... ++
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--EV~k~----dl--- 124 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--EVDKE----DL--- 124 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--EEcHH----HH---
Confidence 3467899998888887643222222 2345788999999999999999998 3444443322 22111 00
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC---CCCcEEEEeCCCh
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS---AKGSKILVTTRSN 310 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iiiTtR~~ 310 (846)
.+...+.+.|+ ...+||+|+.||+.- .+...+..++..+..+ .|...++..|.++
T Consensus 125 ------------~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 125 ------------ATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------hhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 01122222222 256889999999843 3456788888888764 3444455555554
No 204
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=0.00049 Score=66.91 Aligned_cols=245 Identities=17% Similarity=0.061 Sum_probs=144.7
Q ss_pred hcccccceEEEeccCCCcc-hhHHHHHhhccCCceeEEEeCCCChh----hh-------hhhhcccCccCeeeccCCCcc
Q 036168 546 LSDSRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSDSAIE----VL-------SREIGNLKHLRYLDLSGHDKI 613 (846)
Q Consensus 546 ~~~~~~lr~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~----~l-------~~~~~~l~~L~~L~L~~~~~~ 613 (846)
+..+..+..+.++++-.+. -...+..++.+-++|++.+++.-... .+ .+.+-+|++|+..+||.|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3345566667777555542 23456677788888888888764321 22 345677899999999998876
Q ss_pred cccchh----hhcCCCCcEEecCCcCCCcccc--------------ccccccCCCcEEEecccccccccc-----cCCCC
Q 036168 614 KKLPNS----ICELHSLQTVCLGGCRELEELP--------------KDIRYLVNLRMFVVSTKQKSLLES-----GIGCL 670 (846)
Q Consensus 614 ~~lp~~----~~~l~~L~~L~l~~~~~~~~~p--------------~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l 670 (846)
...|+. +++-..|.+|.+++|. +..+. ....+-|.|+......|++...+. .+.+-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 666544 5567889999998875 32211 122355788888888887764332 22333
Q ss_pred CCCCEeccccccCccc-----chhhccCCCCcCEEEeecCCCCc----cccccccCCCCcCeEecccCcccchhhhhh-c
Q 036168 671 SSLRFLMISDCENLEY-----LFDDIDQLCVLRTIFIADCPRLI----SLPPAVKYLSSLETLMLEDCESLTLNLKIE-M 740 (846)
Q Consensus 671 ~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~ 740 (846)
.+|.++.+..|..-.. +...+..+.+|+.|+|.+|.... .+...++..+.|+.|.+..|-.-. ..... .
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~-~G~~~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN-EGVKSVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc-ccHHHHH
Confidence 5788888887654321 12345667889999999885422 233445566778999998883211 00000 0
Q ss_pred ccccccccCCCCCcccceEEccCCCCCC-CCchhhhcCCCCccceeeccccccc
Q 036168 741 EGEESHCDRNKTRLHLRKLFVEGLPPLL-ELPQWLLQGSTKTLKTLIIRNCPNF 793 (846)
Q Consensus 741 ~~~~~~~~~~l~~l~L~~l~l~~~~~l~-~l~~~~~~~~l~~L~~L~L~~~~~l 793 (846)
.........++..+.+.++...+-.-.. .++. +....+|-|..|.+.+|++-
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~-~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNE-FEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhh-hhhcccHHHHHHHHccCcch
Confidence 0000011223444555555554311111 1222 23478899999999988643
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.29 E-value=0.0037 Score=74.32 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=96.7
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++.|.+...++|.+.+.-+-.. +-..++-+.++|++|.|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45788888888777765421100 0023456889999999999999999984 22222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC--------Ch----hhHHHHHHhhCC--CCCCcE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE--------DP----KVWDELKSLLLG--SAKGSK 302 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~gs~ 302 (846)
+++....+ .+...+...+...-+..+.+|++|+++.. .. ....++...+.. ...+.-
T Consensus 522 ----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11111111 11222223333333456789999998531 00 112233334443 223445
Q ss_pred EEEeCCChHHHHHhCC--CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 303 ILVTTRSNKVASIMGT--MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 303 iiiTtR~~~~~~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
||.||..++.....-. ..-...+.++..+.++-.++|..+.........-+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 6667766554322111 12245788888898888999886653322221112 345667776644
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.00081 Score=65.19 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=63.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhcC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNP--GDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~ 269 (846)
.++.|+|..|.||||+|..++.. ...+...++.+. ..++.+.....++.+++.... ......++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888874 322333333331 222222223344444431111 11234455555554 333
Q ss_pred ceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH
Q 036168 270 EIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK 311 (846)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 311 (846)
+.-+||+|.+...+.++..++...+. ..|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 44599999996554443344444432 35778999999754
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0022 Score=68.71 Aligned_cols=145 Identities=10% Similarity=0.148 Sum_probs=86.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc-------------------cCCeeE
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE-------------------HFKLKI 225 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 225 (846)
.++|-+....++..+..... ..+..+.++|++|+||||+|..+++...-.. .++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45777888888888887542 2234599999999999999999887422111 112333
Q ss_pred EEEecCccc---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcE
Q 036168 226 WICVSEDFE---QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSK 302 (846)
Q Consensus 226 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 302 (846)
.++.+.... ..+.++++.+....... .++.-++++|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 443333332 22233333332211100 25667999999977666666677777777777888
Q ss_pred EEEeCCChH-HHHHhCCCCCCCcEecCCCC
Q 036168 303 ILVTTRSNK-VASIMGTMRGTAGYKLEGLP 331 (846)
Q Consensus 303 iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~ 331 (846)
+|++|.... +...+.. +...+.+.+.+
T Consensus 142 ~il~~n~~~~il~tI~S--Rc~~i~f~~~~ 169 (325)
T COG0470 142 FILITNDPSKILPTIRS--RCQRIRFKPPS 169 (325)
T ss_pred EEEEcCChhhccchhhh--cceeeecCCch
Confidence 888887432 2222222 23356666633
No 208
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00046 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=26.5
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhh-ccCCeeEE
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQ-EHFKLKIW 226 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 226 (846)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999854333 45666665
No 209
>PRK06526 transposase; Provisional
Probab=97.28 E-value=0.00057 Score=69.12 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=53.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|++|+|||+||..+..... ...+. +.|+ +..+++.++...... .. ....+.. + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~~-----~~---~~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHHA-----GR---LQAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHhc-----Cc---HHHHHHH-h-ccC
Confidence 4689999999999999999987432 22333 3332 333444444332110 11 1222322 2 234
Q ss_pred EEEEeeccCCCCh--hhHHHHHHhhCC-CCCCcEEEEeCCCh
Q 036168 272 YLLVMDDVWNEDP--KVWDELKSLLLG-SAKGSKILVTTRSN 310 (846)
Q Consensus 272 ~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtR~~ 310 (846)
-+||+||+..... ...+.+...+.. ...++ +|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 5899999965432 222234444432 12344 88888765
No 210
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.28 E-value=0.0043 Score=64.41 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.8
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++.++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999984
No 211
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.0013 Score=78.48 Aligned_cols=137 Identities=24% Similarity=0.328 Sum_probs=79.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.++.++.+.+.+.....+ ......++.++|++|+|||.+|+.++... -+.....+-++++.-.+ .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~-~--- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQE-A--- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhh-h---
Confidence 467899999999999988543111 11234578999999999999999887632 11112222233222111 1
Q ss_pred HHHHHHhcCCCCCCC---CHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEE
Q 036168 240 TKIIKSITGQNPGDL---DTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILV 305 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iii 305 (846)
.-...+.+..++-. ....+.+.++ +...-+|+||++...++..++.|...+..+. ..+-||+
T Consensus 639 -~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 -HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 11112222222211 1122333333 2345699999998888888888888776542 3455777
Q ss_pred eCCC
Q 036168 306 TTRS 309 (846)
Q Consensus 306 TtR~ 309 (846)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7764
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00018 Score=83.11 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCc-chhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 526 RVRHLSFVGANTSI-NDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~-~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
+++++.+.+...-. .+....-..+|.|++|.+.+... ....+.....++++|..||+|+++++.+ ..++++++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 47777776543222 23334556788999998874332 2223556678899999999999998877 67888999999
Q ss_pred eeccCCCccccc--chhhhcCCCCcEEecCCcCCCccc--c----ccccccCCCcEEEecccccc
Q 036168 605 LDLSGHDKIKKL--PNSICELHSLQTVCLGGCRELEEL--P----KDIRYLVNLRMFVVSTKQKS 661 (846)
Q Consensus 605 L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~~~~~ 661 (846)
|.+++-. ...- -..+.+|++|++||+|........ . +.-..||+||.||.|++.+.
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9887432 2221 134678899999999875533221 1 11134677777777766554
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0019 Score=64.67 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=57.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.++|.+|+|||+||.++++... ..-..+++++ ..+++..+-.... . ...+...+ .+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~-~--~~~~~~~~----l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS-N--SETSEEQL----LNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh-h--ccccHHHH----HHHhc-c
Confidence 35788999999999999999998532 2223455553 3444444433321 1 11122222 23333 3
Q ss_pred eEEEEeeccCCCChhhHHH--HHHhhCCC-CCCcEEEEeCCC
Q 036168 271 IYLLVMDDVWNEDPKVWDE--LKSLLLGS-AKGSKILVTTRS 309 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtR~ 309 (846)
.=+||+||+.......|+. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488999997655555553 33443321 112347777764
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.24 E-value=0.002 Score=67.15 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT 247 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 247 (846)
++........+++..-..+ ...+-+.|+|..|+|||.||.++++... ...+. +.|+++ ..++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHh
Confidence 4444455555555432211 2346789999999999999999998643 33343 445543 345555544432
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHH--HHHhh-CCC-CCCcEEEEeCCC
Q 036168 248 GQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDE--LKSLL-LGS-AKGSKILVTTRS 309 (846)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iiiTtR~ 309 (846)
. .+..+. +.. +. +-=||||||+.......|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~-----~~~~~~---l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKEK---IDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHHH---HHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 122222 222 22 34599999997665666643 43333 322 234458888864
No 215
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0061 Score=66.29 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=85.5
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIY 272 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 272 (846)
++.|.|+-++||||+++.+.... ... .+++...+......-+.+... .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 99999999999999997666531 111 455543322211111111111 11111112778
Q ss_pred EEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhC---CCCCCCcEecCCCChHHHHHHHHHhhccCCCC
Q 036168 273 LLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMG---TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQH 349 (846)
Q Consensus 273 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~---~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~ 349 (846)
.++||.|... ..|+.....+.+.++. +|++|+.+........ -..+...+.+.||+..|-..+....+ .
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~-----~ 168 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI-----E 168 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----c
Confidence 9999999654 5688888877776666 8999888765432111 11224578999999988766533000 0
Q ss_pred CCcchHHHHHHHHHhhCCCchHHHH
Q 036168 350 KHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 350 ~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
.... +..-+-.-..||.|-++..
T Consensus 169 -~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 -PSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred -hhHH-HHHHHHHHHhCCCcHHHhC
Confidence 0011 1122333456899987754
No 216
>PRK06921 hypothetical protein; Provisional
Probab=97.23 E-value=0.0019 Score=66.01 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=54.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.++|.+|+|||+||.++++....+. ...++|++. .+++..+.... +.....+. .+. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~-~~~-~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLN-RMK-K 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHH-Hhc-C
Confidence 45789999999999999999998532221 234566654 23333332211 11111222 222 3
Q ss_pred eEEEEeeccCC-----CChhhHH--HHHHhhCCC-CCCcEEEEeCCCh
Q 036168 271 IYLLVMDDVWN-----EDPKVWD--ELKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 271 r~LlVlDdv~~-----~~~~~~~--~l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
-=||||||+.. .....|. .+...+... ..+..+||||...
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35999999932 2223343 344444321 1234588888743
No 217
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.21 E-value=0.0012 Score=71.63 Aligned_cols=154 Identities=12% Similarity=0.230 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH-
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI- 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 242 (846)
..++||++.++.+...+... ..|.|.|++|+|||++|+.+.........|.. +.+.-. ++.+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHH
Confidence 45899999999998888652 36889999999999999999874222223321 111100 122221111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcC---ceEEEEeeccCCCChhhHHHHHHhhCCC---------CCCcEEEEeCCCh
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNG---EIYLLVMDDVWNEDPKVWDELKSLLLGS---------AKGSKILVTTRSN 310 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~---------~~gs~iiiTtR~~ 310 (846)
+...... ..+.....+ .--++++|+++.........|...+... .-..++++++.++
T Consensus 88 i~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 1111000 001011111 1128999999988877777777776321 1123455555443
Q ss_pred HHH------HHhCCCCCCCcEecCCCChHHH-HHHHHHh
Q 036168 311 KVA------SIMGTMRGTAGYKLEGLPYESC-LSLFMKC 342 (846)
Q Consensus 311 ~~~------~~~~~~~~~~~~~l~~l~~~~a-~~L~~~~ 342 (846)
-.. ...... ...+.+++++.++. .+++...
T Consensus 157 LPE~g~~leAL~DRF--liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRM--LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhE--EEEEECCCCCchHHHHHHHHcc
Confidence 211 111111 22578888875444 7777653
No 218
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0089 Score=65.11 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=91.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
-.++-|.+..+.++.+++..-... +-..++=|.++|++|.|||.||++++... . +-|+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch----
Confidence 356889999888888876542211 01335778899999999999999999842 2 223344332
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh-hh----------HHHHHHhhCC---C---CC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP-KV----------WDELKSLLLG---S---AK 299 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~----------~~~l~~~l~~---~---~~ 299 (846)
+|+..+.+ .+.+.+.+.+.+.-..-++++++|+++-... .+ ..+|...+.. . +.
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 23333322 2444455555555567789999999854211 11 1122222221 1 22
Q ss_pred CcEEEEeCCChHHH-HHhC-CCCCCCcEecCCCChHHHHHHHHHhhccCCC
Q 036168 300 GSKILVTTRSNKVA-SIMG-TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQ 348 (846)
Q Consensus 300 gs~iiiTtR~~~~~-~~~~-~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~ 348 (846)
+--||-+|..++.. .... ...-.+.+.+..=++..-.+++...+.+-..
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl 379 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL 379 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC
Confidence 33333344333322 2211 1122356777777777667777766644333
No 219
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.21 E-value=0.0013 Score=64.93 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV 229 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 229 (846)
+-.++|+|..|.||||++..+... ....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346779999999999999999874 5667877766643
No 220
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0031 Score=69.81 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=66.6
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
.+.+-+|.++-.++|.+++.-..=..+.+-++++.+|++|+|||.+|+.++.. ....| +-+++++-.+..++---
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 46778999999999999885432112245689999999999999999999973 33334 23456655554433210
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWN 281 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 281 (846)
= ...-..-...+++.+++ .+..+-|+.+|.|+.
T Consensus 484 R------RTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 R------RTYVGAMPGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred c------eeeeccCChHHHHHHHh-hCCCCceEEeehhhh
Confidence 0 00001112233444443 245567899998853
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=97.20 E-value=0.0092 Score=69.97 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=100.0
Q ss_pred CCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEee
Q 036168 199 LGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMD 277 (846)
Q Consensus 199 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 277 (846)
|.++||||+|..+++..- ...++ .++-++.+...... .+++++.......+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 778999999999998521 12222 25566666544443 333333332111000 01245799999
Q ss_pred ccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHH
Q 036168 278 DVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVK 356 (846)
Q Consensus 278 dv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~ 356 (846)
+++.........|...+......+++|+++.+.. +.....+ +...+.+.+++.++....+...+...+...+ .+
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e 712 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EE 712 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HH
Confidence 9998888888888888887666777777766543 2222222 2457999999999998888876643332212 35
Q ss_pred HHHHHHHhhCCCchHHHHHhh
Q 036168 357 IGEEIVKKCGGIPLAVRTLGS 377 (846)
Q Consensus 357 ~~~~i~~~~~g~Plai~~~~~ 377 (846)
....|++.++|.+..+..+-.
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 678999999998865544433
No 222
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0015 Score=72.47 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=62.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
+.-+++.++|++|+||||||+.++++ ..|. ++=|++|...+...+-..|...+......+ ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCce-EEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 55689999999999999999999873 3453 667888888877777777766553221110 02
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhC
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLL 295 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~ 295 (846)
+++.-||+|.++.......+.+...+.
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHH
Confidence 577889999997766545555555543
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.19 E-value=0.00034 Score=72.93 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=43.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
+++|.++.++++++++.....+.+...++++|+|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999977654332456899999999999999999998743
No 224
>PRK09183 transposase/IS protein; Provisional
Probab=97.17 E-value=0.0012 Score=67.36 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=53.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|+|++|+|||+||..+..... ...+. +.+++ ..++...+...... .. +...+...+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~-v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIK-VRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCe-EEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4678999999999999999976422 22222 33443 22333333222111 01 112222222 344
Q ss_pred EEEEeeccCCCChhhH--HHHHHhhCCC-CCCcEEEEeCCCh
Q 036168 272 YLLVMDDVWNEDPKVW--DELKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
-++|+||+.......+ +.+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 6999999965332222 2344444321 2344 88888754
No 225
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.16 E-value=0.0013 Score=62.10 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=69.6
Q ss_pred cccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHH
Q 036168 166 IIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKS 245 (846)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 245 (846)
+||....+.++.+.+..... ...-|.|+|..|+||+.+|+.+++..... -...+-|+++. .+.+.+-.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888887765442 23467799999999999999998742211 11122333332 2333333333332
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeCCCh
Q 036168 246 ITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTTRSN 310 (846)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtR~~ 310 (846)
..+...+.... ....+. +...=-|+||++.......-..|..++... ....|||.||...
T Consensus 74 ~~~~~~~~~~~--~~G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSE--BEHHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccc--cCCcee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 21111111110 001222 123347899999888776667777766421 1256888888743
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.0025 Score=62.38 Aligned_cols=187 Identities=12% Similarity=0.166 Sum_probs=106.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch----hhhccCCeeEEEEecCc---------
Q 036168 166 IIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ----SVQEHFKLKIWICVSED--------- 232 (846)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 232 (846)
+.++++..+.+...... .....+.++|+.|.||-|.+..+.+.. ..+-+-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56667766766666542 346788899999999999987766531 11112233334433322
Q ss_pred -c-----------cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEeeccCCCChhhHHHHHHhhCCCCC
Q 036168 233 -F-----------EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIY-LLVMDDVWNEDPKVWDELKSLLLGSAK 299 (846)
Q Consensus 233 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 299 (846)
. ..+.+.++++.+......-+ .-..+.| ++|+-.++....+.-..++.....-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 12233444444432111000 0012233 667777755555555566666655555
Q ss_pred CcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 300 GSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 300 gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+|+|+...+. .+-..+.. +...+.+...+++|....++..+-..+... | .+++.+|+++++|+-.-.-.+
T Consensus 157 ~~RlIl~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~l-p--~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQL-P--KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred CceEEEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccC-c--HHHHHHHHHHhcccHHHHHHH
Confidence 67877743321 11111111 123688999999999999998886555432 2 578899999999976443333
No 227
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.14 E-value=0.0026 Score=76.25 Aligned_cols=140 Identities=21% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.++.++.+...+.....+ .......+.++|+.|+|||+||+.+++.. -+.-...+.++.+.-.+... .
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~-~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHT-V 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhcccccc-H
Confidence 456899999999998887532211 10223467789999999999999998632 11112233344333221111 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce-EEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNGEI-YLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTT 307 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTt 307 (846)
.. +.+.+++-...++ ...+.+.++.++ -+++||+++......+..|...+..+ -..+-||+||
T Consensus 585 ~~----l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 585 SK----LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred HH----hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 11 1122211111111 112333444444 58999999888888888888887653 1345566677
Q ss_pred CCh
Q 036168 308 RSN 310 (846)
Q Consensus 308 R~~ 310 (846)
...
T Consensus 660 n~g 662 (821)
T CHL00095 660 NLG 662 (821)
T ss_pred Ccc
Confidence 643
No 228
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.14 E-value=0.0016 Score=56.43 Aligned_cols=21 Identities=48% Similarity=0.600 Sum_probs=18.8
Q ss_pred EEEecCCCCcHHHHHHHHhcc
Q 036168 194 IPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (846)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.14 E-value=0.0041 Score=73.95 Aligned_cols=183 Identities=18% Similarity=0.191 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
+++.|.+..++++.+.+...-.. +-...+.+.|+|++|+|||+||+.+++. .... ++.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----
Confidence 45889999999988876432100 0022467889999999999999999873 2222 1222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-----------hhhHHHHHHhhCCC-CCCcEEE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-----------PKVWDELKSLLLGS-AKGSKIL 304 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~ii 304 (846)
++ .... .......+...+.......+.+|++|+++... ......+...+... ..+..++
T Consensus 247 ~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 11 1100 00111223333333334567899999984321 11223344444332 2233344
Q ss_pred E-eCCChHH-HHHhCC-CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch
Q 036168 305 V-TTRSNKV-ASIMGT-MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL 370 (846)
Q Consensus 305 i-TtR~~~~-~~~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (846)
| ||....- ...... ..-...+.+...+.++-.+++...........+ .....+++.+.|..-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 4 5544321 111111 111235778888888888888865522211111 124567777777653
No 230
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=8.1e-05 Score=64.55 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=63.0
Q ss_pred hhccCCceeEEEeCCCChhhhhhhhcc-cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCC
Q 036168 572 CISKSQFLRVIDLSDSAIEVLSREIGN-LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNL 650 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~~~~~~-l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 650 (846)
.+.+...|...+|++|.+..+|+.|.. ++.++.|++++| .+..+|..+..++.|+.|+++.|. +...|..+..|.+|
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKL 125 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhH
Confidence 345566677777777777777766654 457777777755 467777777777777777777765 55566666667777
Q ss_pred cEEEecccccccccc
Q 036168 651 RMFVVSTKQKSLLES 665 (846)
Q Consensus 651 ~~L~l~~~~~~~~~~ 665 (846)
-.|+...|.+..++.
T Consensus 126 ~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 126 DMLDSPENARAEIDV 140 (177)
T ss_pred HHhcCCCCccccCcH
Confidence 777777776665543
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.13 E-value=0.00084 Score=61.39 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=64.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh-hccCCeeEEEEecCcccHHHHHHHHHHH
Q 036168 167 IGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV-QEHFKLKIWICVSEDFEQRQIMTKIIKS 245 (846)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 245 (846)
||+...++++.+.+.... ....-|.|+|..|+||+++|+.++..... ...|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 566677777777765543 22356789999999999999988874322 1122110 0100
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-CCCcEEEEeCCCh
Q 036168 246 ITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
.+ .+.+.. .+.--|+|+|++..+......+...+... ....|+|.||+..
T Consensus 60 --------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 14456889999888877777777777643 5678999998854
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.00065 Score=63.34 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=7.7
Q ss_pred ccCCCCcCeEeccc
Q 036168 715 VKYLSSLETLMLED 728 (846)
Q Consensus 715 ~~~l~~L~~L~l~~ 728 (846)
+..+|+|+.||+..
T Consensus 136 l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcceEeehhh
Confidence 34455666666554
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.12 E-value=0.00025 Score=65.15 Aligned_cols=90 Identities=28% Similarity=0.281 Sum_probs=51.4
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEE
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYL 273 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 273 (846)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..++....--.-....... ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~---~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD---GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE----CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeeccccccccc---ccccccc-----cceeE
Confidence 6799999999999999998742 1 12334567777776665532211100000000 0000001 17899
Q ss_pred EEeeccCCCChhhHHHHHHhhCC
Q 036168 274 LVMDDVWNEDPKVWDELKSLLLG 296 (846)
Q Consensus 274 lVlDdv~~~~~~~~~~l~~~l~~ 296 (846)
+|||++.......+..+...+..
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEE 91 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSS
T ss_pred EEECCcccCCHHHHHHHHHHHhh
Confidence 99999987777777777776653
No 234
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.12 E-value=0.013 Score=56.94 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=96.4
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREK---IIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
+++||.++...+ |.+.|..+..=+...++-|..+|++|.|||.+|+++++.. +-.| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vka--------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVKA--------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEech--------H
Confidence 568998876543 5666655432122567899999999999999999999842 2121 22211 1
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceEEEEeeccCCCC------------hhhHHHHHHhhCC--CCCCcEEEE
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDR-LNGEIYLLVMDDVWNED------------PKVWDELKSLLLG--SAKGSKILV 305 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~iii 305 (846)
+++.+--+ +....++.+.++ -+.-++++++|.++-.. .+....|..-+.. .+.|-..|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 12211101 111222222222 24568999999874211 1111222222332 355766777
Q ss_pred eCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 306 TTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 306 TtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
.|.++++....-...-...++..--+++|-.+++...+-.-....... .+.++++.+|.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 777776554322221123466666678888888888773322221111 35666666663
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.12 E-value=0.025 Score=60.50 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 170 DEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
+.-.+.|.+.+..... ..+.+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455677777765432 347899999999999999999998743
No 236
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0047 Score=65.03 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=66.5
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCC
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEG 347 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~ 347 (846)
+++=++|+|+++.........|...+...++++.+|++|.++ .+...+.+ +...+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHcC----
Confidence 445588999998888888999999998877788777666654 34433322 23479999999999998887642
Q ss_pred CCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 348 QHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 348 ~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
. .+ ...++..++|.|.....+
T Consensus 205 ~--~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 V--AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--Ch-----HHHHHHHcCCCHHHHHHH
Confidence 1 11 123577889999755444
No 237
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.0077 Score=63.42 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=49.0
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHh
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKC 342 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~ 342 (846)
+++-++|+|++...+...-..+...+.....+..+|++|.+.. +...+.. +...+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS--RCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556798887777777777777766555677777777754 3333222 2347889999999998888653
No 238
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0055 Score=58.34 Aligned_cols=104 Identities=14% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC-CeeEEEEecCcccHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF-KLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 241 (846)
-.++||-++.++++.-...+ .+...+.|.||+|+||||-+..+++.. ....| +.+.-.+.|.
T Consensus 26 l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASd---------- 88 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASD---------- 88 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCcc----------
Confidence 35789999999988877655 335678899999999999998887632 11111 2222222222
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhc-------CceEEEEeeccCCCChhhHHHHHHhh
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLN-------GEIYLLVMDDVWNEDPKVWDELKSLL 294 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~-------~kr~LlVlDdv~~~~~~~~~~l~~~l 294 (846)
+...+.+...|+.+-+ ++.-.+|||..+......-..++...
T Consensus 89 -----------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtM 137 (333)
T KOG0991|consen 89 -----------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 137 (333)
T ss_pred -----------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHH
Confidence 2234444455544332 44558999999766544444555543
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.06 E-value=0.00087 Score=63.95 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=50.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
..-+.|+|.+|+|||.||..+.+... ...+. +.|++ ..+++..+-. .. ........... +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~~-v~f~~------~~~L~~~l~~----~~-~~~~~~~~~~~----l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGYS-VLFIT------ASDLLDELKQ----SR-SDGSYEELLKR----LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE------HHHHHHHHHC----CH-CCTTHCHHHHH----HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCcc-eeEee------cCceeccccc----cc-cccchhhhcCc----cc-c
Confidence 35689999999999999999987532 23333 55664 3344444422 11 11122222222 22 2
Q ss_pred eEEEEeeccCCCChhhHHH--HHHhhCCC-CCCcEEEEeCCCh
Q 036168 271 IYLLVMDDVWNEDPKVWDE--LKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
-=||||||+-......|.. +...+... ..+ .+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 2488899996654444432 22222211 123 478888743
No 240
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.05 E-value=0.0074 Score=66.95 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=91.9
Q ss_pred CccccchHHHHHHHHHHhc---C--CCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQ---T--NDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~---~--~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 238 (846)
+++.|.+...+.+...... . .-+- ..++-|.++|++|.|||.+|+.+++. ....| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H-
Confidence 4677877766666543211 0 0011 33567899999999999999999874 22111 112111 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC--------Chh----hHHHHHHhhCCCCCCcEEEEe
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE--------DPK----VWDELKSLLLGSAKGSKILVT 306 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~----~~~~l~~~l~~~~~gs~iiiT 306 (846)
+.... ...+...+.+.+...-...+++|++|+++.. +.. ....+...+.....+.-||.|
T Consensus 295 ---l~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11111 0111222223333222356899999998531 100 111222333333344456667
Q ss_pred CCChHHHH-Hh-CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 307 TRSNKVAS-IM-GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 307 tR~~~~~~-~~-~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
|.+.+... .+ ....-+..+.++.-+.++-.++|..+..........+ .....+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 76654221 11 1112234678888888888999988774432211011 11345666665543
No 241
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0068 Score=60.77 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=49.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhh--hccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSV--QEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
.|+|.++|++|.|||+|++++++...+ .+.|....-+.+... .++.+...+- ..-+..+.+.|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 489999999999999999999986543 355555555544322 2222222221 1134455566666665
Q ss_pred Cce--EEEEeeccC
Q 036168 269 GEI--YLLVMDDVW 280 (846)
Q Consensus 269 ~kr--~LlVlDdv~ 280 (846)
++. +.+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 544 456678884
No 242
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0044 Score=65.11 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCe-eEEEEecCc-ccHHHHHHHHHHHhcCC
Q 036168 172 DREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKL-KIWICVSED-FEQRQIMTKIIKSITGQ 249 (846)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~ 249 (846)
...++++.+..-.. -.-+.|+|.+|+|||||++.+++... .++-+. ++|+.+.+. .++.++++.+...+...
T Consensus 119 ~~~RvID~l~PiGk-----GQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIGK-----GQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecCC-----CceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 33457777765422 23568999999999999999987422 122233 356666544 46778888887766533
Q ss_pred CCCCCCHHH-----HHHHHHHHh--cCceEEEEeecc
Q 036168 250 NPGDLDTDQ-----LRRILRDRL--NGEIYLLVMDDV 279 (846)
Q Consensus 250 ~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 279 (846)
..+...... ....+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 222211111 111222222 689999999998
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.011 Score=62.24 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=55.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 267 (846)
.++++|+|+|++|+||||++..++.... ...+ .+..++..... ...+-+....+.++-......+...+.+.+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3458999999999999999999986432 2223 24445432221 1112222222222211111235555655554432
Q ss_pred cC-ceEEEEeeccCCC--ChhhHHHHHHhhCCC
Q 036168 268 NG-EIYLLVMDDVWNE--DPKVWDELKSLLLGS 297 (846)
Q Consensus 268 ~~-kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 297 (846)
.. +.=++++|-.-.. +....+++...+...
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~ 349 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQV 349 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhc
Confidence 21 2347888876432 234455666655433
No 244
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.018 Score=63.68 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=89.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-+++-|.++-..+|.+.+.-+-.. +-..++-|.++|+||.|||++|+++++. .+..| +.+...
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH---
Confidence 355666777777776554321100 0134678889999999999999999983 33344 233222
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------ChhhHHHHHHhhCCCCCC--cE
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPKVWDELKSLLLGSAKG--SK 302 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~~~~g--s~ 302 (846)
+++...-+ .+...+.+...+.=+--+.+++||.++.. ......+|..-+...... --
T Consensus 503 -----EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 -----ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred -----HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 11111111 12222333333222345689999987431 112233344444443222 22
Q ss_pred EEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHH
Q 036168 303 ILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVK 356 (846)
Q Consensus 303 iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~ 356 (846)
||-.|..++... .+....-+..+.++.=+.+.-.++|..++..-....+-++.+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~ 628 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEE 628 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHH
Confidence 333443333322 222222244677777777777899999985544433333443
No 245
>PRK07261 topology modulation protein; Provisional
Probab=96.97 E-value=0.0017 Score=61.65 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=38.9
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhh-ccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQ-EHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
.|.|+|++|+||||||+.+....... -+.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999987632211 13344444211 112234455555666666555
Q ss_pred EEEEeecc
Q 036168 272 YLLVMDDV 279 (846)
Q Consensus 272 ~LlVlDdv 279 (846)
.|+|+.
T Consensus 61 --wIidg~ 66 (171)
T PRK07261 61 --WIIDGN 66 (171)
T ss_pred --EEEcCc
Confidence 577876
No 246
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.95 E-value=0.0039 Score=72.94 Aligned_cols=122 Identities=21% Similarity=0.332 Sum_probs=70.8
Q ss_pred CccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
..++|.++.++.|...+.....+ .......+.++|++|+|||++|+.++... . ...+.++++.-.+.. .
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~-~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH-T-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc-c--
Confidence 45799999999998887632111 00224578999999999999999998742 2 123344443322211 1
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEeeccCCCChhhHHHHHHhhCC
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNG-EIYLLVMDDVWNEDPKVWDELKSLLLG 296 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~ 296 (846)
...+.+.+++-...+ ....+.+.++. ..-+|+||+++....+.+..+...+..
T Consensus 530 --~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred --HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 122223222111100 01122233333 346999999988888888888887764
No 247
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.94 E-value=0.022 Score=59.10 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
++.++=..+....+...+.. .+.|.|.|.+|+||||+|+.++.. .... .+.|.+....+..++.-.-
T Consensus 44 d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhcCCCc
Confidence 34455555556667777743 246899999999999999999873 2222 2355555555544433221
Q ss_pred HHHhcCCC-CCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCC--------------CCCCcEEEEeC
Q 036168 243 IKSITGQN-PGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLG--------------SAKGSKILVTT 307 (846)
Q Consensus 243 ~~~l~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------------~~~gs~iiiTt 307 (846)
.-.+.... ....... .+-.. ..+...+++|.+....++....|...+.. ..+..++|.|.
T Consensus 111 ~~~l~~g~~~~~f~~G----pL~~A-~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~ 185 (327)
T TIGR01650 111 AIVLKDGKQITEFRDG----ILPWA-LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATA 185 (327)
T ss_pred eeeccCCcceeEEecC----cchhH-HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEee
Confidence 10010000 0000000 01011 12457899999976665555554444431 12456666666
Q ss_pred CChHHHH----HhCCC-------CCC-CcEecCCCChHHHHHHHHHhh
Q 036168 308 RSNKVAS----IMGTM-------RGT-AGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 308 R~~~~~~----~~~~~-------~~~-~~~~l~~l~~~~a~~L~~~~a 343 (846)
....... +.++. .+. ..+.+.-++.++=.+++...+
T Consensus 186 Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 186 NTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 6432110 01110 011 134677777777777777654
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.87 E-value=0.01 Score=55.02 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCceEEEEeeccCC--CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhC
Q 036168 258 QLRRILRDRLNGEIYLLVMDDVWN--EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMG 317 (846)
Q Consensus 258 ~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~ 317 (846)
+..-.|.+.+-+++-+|+-|.--. +..-.|+-+.-+-.-+..|..|+++|.+.++...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334456667778888999995311 223445443333223456899999999998877654
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.004 Score=65.44 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=55.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.++|.+|+|||+||..+++.. ...-..++|+++ .+++..+...-... ..+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~------~~l~~~l~~~~~~~---~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA------DELIEILREIRFNN---DKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH------HHHHHHHHHHHhcc---chhHHHH---H-HHhc-cC
Confidence 568999999999999999999853 222234566643 33333332211110 1111111 2 2222 12
Q ss_pred EEEEeeccCCCChhhH--HHHHHhhCCC-CCCcEEEEeCCCh
Q 036168 272 YLLVMDDVWNEDPKVW--DELKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
=|||+||+.......| +.+...+... ..+-.+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999965433333 3444444322 2244588888753
No 250
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.015 Score=62.25 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=36.8
Q ss_pred CccccchH---HHHHHHHHHhcCCC----CCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDE---DREKIIELLMQTND----GESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~---~~~~l~~~L~~~~~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.-|-|+ |+++|+++|..+.. |+ .=++=|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGG-KLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGG-KLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccC-cCCCceEEeCCCCCchhHHHHHhhcc
Confidence 44566654 66777888866531 11 44677899999999999999999864
No 251
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.014 Score=62.35 Aligned_cols=153 Identities=22% Similarity=0.296 Sum_probs=83.7
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
.....+.+.|++|+|||+||..++. ...|+.+--++ + +++. +- .+......+.....+..+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS---p---e~mi--------G~-sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS---P---EDMI--------GL-SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC---h---HHcc--------Cc-cHHHHHHHHHHHHHHhhc
Confidence 5577888999999999999999986 34566433221 1 1100 00 000011122233344446
Q ss_pred CceEEEEeeccCCC------C----hhhHHHHHHhhC---CCCCCcEEEEeCCChHHHHHhCCCC-CCCcEecCCCCh-H
Q 036168 269 GEIYLLVMDDVWNE------D----PKVWDELKSLLL---GSAKGSKILVTTRSNKVASIMGTMR-GTAGYKLEGLPY-E 333 (846)
Q Consensus 269 ~kr~LlVlDdv~~~------~----~~~~~~l~~~l~---~~~~gs~iiiTtR~~~~~~~~~~~~-~~~~~~l~~l~~-~ 333 (846)
.+--.||+||+... . -.....|.-++. +.++.--|+-||....+.+.++-.. -...+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 66679999998432 0 011222332333 2223333555888888888776432 134688998887 6
Q ss_pred HHHHHHHHhh-ccCCCCCCcchHHHHHHHHHhh
Q 036168 334 SCLSLFMKCA-FKEGQHKHPNLVKIGEEIVKKC 365 (846)
Q Consensus 334 ~a~~L~~~~a-~~~~~~~~~~~~~~~~~i~~~~ 365 (846)
+..+.++..- |. +.+...++++...+|
T Consensus 677 ~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 6777776543 21 222334455555555
No 252
>PHA00729 NTP-binding motif containing protein
Probab=96.84 E-value=0.0049 Score=60.21 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999874
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.82 E-value=0.016 Score=53.55 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=63.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC---cccHHHHHHHHHHHhc----CCC--CCCCCHH-----
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE---DFEQRQIMTKIIKSIT----GQN--PGDLDTD----- 257 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~----~~~--~~~~~~~----- 257 (846)
..|-|++..|.||||+|...+-. ..++=..+.++-.-. .......+..+ ..+. +.. +...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47788888999999999777652 222222333433222 23333444333 1110 110 1111111
Q ss_pred --HHHHHHHHHhcCce-EEEEeeccCC---CChhhHHHHHHhhCCCCCCcEEEEeCCChH
Q 036168 258 --QLRRILRDRLNGEI-YLLVMDDVWN---EDPKVWDELKSLLLGSAKGSKILVTTRSNK 311 (846)
Q Consensus 258 --~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 311 (846)
...+..++.+.... =|+|||++-. ...-..+++.+.+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223334444433 4999999732 123345677777777777889999999854
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.81 E-value=0.0047 Score=59.22 Aligned_cols=37 Identities=35% Similarity=0.538 Sum_probs=28.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEE
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWI 227 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 227 (846)
....+|.|.|+.|+||||+|+.++.. ....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 34569999999999999999999873 44445555555
No 255
>PHA02244 ATPase-like protein
Probab=96.79 E-value=0.01 Score=62.12 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=53.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIY 272 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 272 (846)
-|.|+|++|+|||+||+.+++. .... |+.++...+.. .+.... ..........+.. .+ .+.-
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~p-----fv~In~l~d~~----~L~G~i--~~~g~~~dgpLl~----A~-~~Gg 182 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDLD-----FYFMNAIMDEF----ELKGFI--DANGKFHETPFYE----AF-KKGG 182 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecChHHH----hhcccc--cccccccchHHHH----Hh-hcCC
Confidence 4678999999999999999874 2212 33333211100 111000 0111111111111 12 2346
Q ss_pred EEEeeccCCCChhhHHHHHHhhCC-----------CCCCcEEEEeCCC
Q 036168 273 LLVMDDVWNEDPKVWDELKSLLLG-----------SAKGSKILVTTRS 309 (846)
Q Consensus 273 LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iiiTtR~ 309 (846)
+++||++..........|...+.. ..++.++|+|+..
T Consensus 183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 183 LFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred EEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 999999977666665666665531 1357788888875
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.78 E-value=0.011 Score=55.90 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=28.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
++.|+|.+|+||||++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999998743 22334577777655543
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.028 Score=61.36 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=78.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
+.=|.+||++|.|||-||++|++. ...+| +++.++ +++..-. + .+...+...+.+.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYV----G-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYV----G-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHh----h-----hHHHHHHHHHHHhhcCC
Confidence 456789999999999999999994 44444 444433 1221111 1 12222333333333467
Q ss_pred eEEEEeeccCCC-----C------hhhHHHHHHhhCC--CCCCcEEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHH
Q 036168 271 IYLLVMDDVWNE-----D------PKVWDELKSLLLG--SAKGSKILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESC 335 (846)
Q Consensus 271 r~LlVlDdv~~~-----~------~~~~~~l~~~l~~--~~~gs~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a 335 (846)
+++|+||.++.. + .....+|.--+.. ...|--||-.|..+++... .....-+...-++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999998531 1 1222333333433 2456667777777665432 22222234566777778888
Q ss_pred HHHHHHhhcc
Q 036168 336 LSLFMKCAFK 345 (846)
Q Consensus 336 ~~L~~~~a~~ 345 (846)
.+++....-.
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 8888888753
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.73 E-value=0.0048 Score=61.11 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=35.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
+.-+++.|+|++|+|||++|.+++... ......++|++... ++...+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHH
Confidence 445799999999999999999987642 23345688998865 5554443
No 259
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.73 E-value=0.0065 Score=60.95 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=33.8
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
..-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHH
Confidence 345799999999999999999998743 2234568898876 444433
No 260
>PTZ00494 tuzin-like protein; Provisional
Probab=96.71 E-value=0.2 Score=53.16 Aligned_cols=173 Identities=12% Similarity=0.149 Sum_probs=105.7
Q ss_pred cCccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHH
Q 036168 159 SFVLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 159 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 238 (846)
.+..+..+|.|+++-..+...|.+.+. ..++++.+.|.-|.||++|.+....... -..++|.+.... +-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E---Dt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE---DT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc---ch
Confidence 344567899999998888888866543 5689999999999999999988776322 246788887664 45
Q ss_pred HHHHHHHhcCCCCCCC-C-HH---HHHHHHHHHhcCceEEEEeeccCCCC-hhhHHHHHHhhCCCCCCcEEEEeCCChHH
Q 036168 239 MTKIIKSITGQNPGDL-D-TD---QLRRILRDRLNGEIYLLVMDDVWNED-PKVWDELKSLLLGSAKGSKILVTTRSNKV 312 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~-~-~~---~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTtR~~~~ 312 (846)
++.+++.++-...+.. | ++ +....-+....++.-+||+-==...+ ...+.+... |.....-|+|++----+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhh
Confidence 6677777754433221 1 11 11122222345666677764221111 122222222 2333445778876655544
Q ss_pred HHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 313 ASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.......++-..|.+++|+.++|.++-.+..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 4333333344579999999999999877654
No 261
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.69 E-value=0.013 Score=65.49 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=43.2
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC 228 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 228 (846)
+++--...++++..||.....+. ...+++.++|++|.||||.++.+++. -.|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 44445667888888887643222 34679999999999999999999873 2466666764
No 262
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.65 E-value=0.007 Score=64.17 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=74.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.++...... -...+.+++..- +...+...++
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~-~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL-NENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCC-CHHHHHHHHc
Confidence 4589999989888888766542 23467899999999999999998632111 112234444432 2222222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRS 309 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 309 (846)
..-.+...+... .....+. ....-.|+||+|..........+...+.... ...+||.||..
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 111110000000 0011111 2223468899998887777777877765421 13578887764
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.0083 Score=60.80 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=48.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
..-+.++|.+|+|||.||.++.+... +..+ .+.++ +..+++.++...... . .....+.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~------~~~el~~~Lk~~~~~----~----~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFI------TAPDLLSKLKAAFDE----G----RLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEE------EHHHHHHHHHHHHhc----C----chHHHHHHHhh-c
Confidence 45788999999999999999999644 3333 34555 345566666555422 1 11122222121 1
Q ss_pred eEEEEeeccCCCChhhHH
Q 036168 271 IYLLVMDDVWNEDPKVWD 288 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~ 288 (846)
-=||||||+--.....|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 239999999655444443
No 264
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.65 E-value=0.019 Score=65.75 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=76.1
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+++..... -...+.+++..- ....+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~--~~~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL--SETLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC--CHHHHHH
Confidence 346799999999998888765432 23467899999999999999998742211 112234444332 1222222
Q ss_pred HHHHhcCCCCCCCC--HHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCC
Q 036168 242 IIKSITGQNPGDLD--TDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTR 308 (846)
Q Consensus 242 i~~~l~~~~~~~~~--~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR 308 (846)
.+.+...+... .......+ .....-.|+||++..........|...+.... ...+||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~---~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRF---ELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCcc---cccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 12121111100 00000000 01234578999998888777788887775421 1257888775
Q ss_pred C
Q 036168 309 S 309 (846)
Q Consensus 309 ~ 309 (846)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 265
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.63 E-value=0.0013 Score=58.63 Aligned_cols=22 Identities=45% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 266
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.014 Score=68.03 Aligned_cols=123 Identities=23% Similarity=0.315 Sum_probs=77.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCc--ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESE--TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
..++|.++.+..|.+.+.....+-.. ..-.+.+.|+.|+|||-||++++.. +-+..+..+-++.++- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-
Confidence 45788888899998888766533212 4678889999999999999999873 3333344444444332 22
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEeeccCCCChhhHHHHHHhhCCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIY-LLVMDDVWNEDPKVWDELKSLLLGS 297 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (846)
...+.+.++. .-..+....|.+.++.++| +|+||||+..+......+...+..+
T Consensus 633 -vskligsp~g-yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 -VSKLIGSPPG-YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhhccCCCcc-cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333232221 1112223456666666665 8889999888877777666766543
No 267
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.61 E-value=0.0073 Score=61.79 Aligned_cols=133 Identities=25% Similarity=0.402 Sum_probs=72.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc-hhhhccCCeeEE----EEecCccc-------
Q 036168 167 IGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND-QSVQEHFKLKIW----ICVSEDFE------- 234 (846)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~~------- 234 (846)
-+|..+..--.++|.. +.+..|.+.|.+|.|||.||.+..-. ...+..|..++- +.+++...
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 3455555555666765 45889999999999999999655422 123344543331 12222211
Q ss_pred --HHHHHHHH---HHHhcCCCCCCCCHHHHHHHHH---------HHhcCc---eEEEEeeccCCCChhhHHHHHHhhCCC
Q 036168 235 --QRQIMTKI---IKSITGQNPGDLDTDQLRRILR---------DRLNGE---IYLLVMDDVWNEDPKVWDELKSLLLGS 297 (846)
Q Consensus 235 --~~~~~~~i---~~~l~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (846)
..--+..| ++.+.... ....+.+...+. .+++++ ..++|+|...+... .+++..+...
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~--~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~ 375 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPN--EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRA 375 (436)
T ss_pred hhccchHHHHHhHHHHHhccc--ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhc
Confidence 11112222 22222111 111122222211 123443 45999999987765 3456666778
Q ss_pred CCCcEEEEeCCCh
Q 036168 298 AKGSKILVTTRSN 310 (846)
Q Consensus 298 ~~gs~iiiTtR~~ 310 (846)
++||||+.|.-..
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 8999999987644
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.023 Score=56.45 Aligned_cols=124 Identities=18% Similarity=0.279 Sum_probs=69.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchh-----hh------ccC---CeeEEEEecCcc------cH----------------
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQS-----VQ------EHF---KLKIWICVSEDF------EQ---------------- 235 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~~~------~~---------------- 235 (846)
.+++|+|+.|.|||||.+.+.--.. +. ..+ ..+.||+-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5999999999999999999975211 00 001 134455321111 11
Q ss_pred ------HHHHHHHHHHhc-----CCCCCCCCHHHHHHH-HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC-CCCCc
Q 036168 236 ------RQIMTKIIKSIT-----GQNPGDLDTDQLRRI-LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG-SAKGS 301 (846)
Q Consensus 236 ------~~~~~~i~~~l~-----~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs 301 (846)
.+...+.++.++ .......+-.+.++. |.+.|..++=|++||.--. .|...-..+...+.. ...|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 233444444443 233444555555554 4566788888999996422 122333333333332 11288
Q ss_pred EEEEeCCChHHHHH
Q 036168 302 KILVTTRSNKVASI 315 (846)
Q Consensus 302 ~iiiTtR~~~~~~~ 315 (846)
.|++.|.+-.....
T Consensus 191 tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 TVLMVTHDLGLVMA 204 (254)
T ss_pred EEEEEeCCcHHhHh
Confidence 89999998765443
No 269
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.59 E-value=0.012 Score=59.06 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=52.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccC------CeeEEEEecCcccHHHHHHHHHHHhcCCC---------CCC
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF------KLKIWICVSEDFEQRQIMTKIIKSITGQN---------PGD 253 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~ 253 (846)
..-.++.|+|.+|+|||+||..++.... ... ..++|++....++...+. ++........ ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 3457999999999999999998876321 222 457898887766654443 3333321110 011
Q ss_pred CCHHHHHHHHHHHhc----CceEEEEeeccC
Q 036168 254 LDTDQLRRILRDRLN----GEIYLLVMDDVW 280 (846)
Q Consensus 254 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~ 280 (846)
.+.+++...+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 244455544444332 344588888873
No 270
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.058 Score=61.72 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=102.4
Q ss_pred CccccchHHH---HHHHHHHhcCC----CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDR---EKIIELLMQTN----DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~---~~l~~~L~~~~----~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++.|-++.. +++++.|..+. -|. .-++=+.++|++|.|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----
Confidence 5678877655 45555564432 111 3467789999999999999999987321 335555544
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC------------Chh---hHHHHHHhhCCCCCCc
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE------------DPK---VWDELKSLLLGSAKGS 301 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~~~---~~~~l~~~l~~~~~gs 301 (846)
+.++.+.+.. ...+.+.....=...+.++.+|+++.. +.+ ...++..-+.......
T Consensus 379 ----EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222211 111222222222456788999987431 111 2223333334433333
Q ss_pred --EEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchH
Q 036168 302 --KILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLA 371 (846)
Q Consensus 302 --~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla 371 (846)
-++-+|+..++... +....-++.+.++.=+.....++|.-++...... .+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 33346666555432 2233335678888888888899999888443322 24445556 88888887744
No 271
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.55 E-value=0.033 Score=56.47 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=92.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCee-EEEEecCccc-HHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLK-IWICVSEDFE-QRQIMTK 241 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~ 241 (846)
..++|-.++...+..++....-. ..-..+.|+|+.|.|||+|......+ ...|... .-|...+... ..-++..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 35788888888888887654211 11236778999999999999777765 2233222 2333333322 2334445
Q ss_pred HHHHhc----CCCCCCCCHHHHHHHHHHHhc------CceEEEEeeccCCCChhhHH-HHHHhhC----CCCCCcEEEEe
Q 036168 242 IIKSIT----GQNPGDLDTDQLRRILRDRLN------GEIYLLVMDDVWNEDPKVWD-ELKSLLL----GSAKGSKILVT 306 (846)
Q Consensus 242 i~~~l~----~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~-~l~~~l~----~~~~gs~iiiT 306 (846)
|.+++. .......+..+....+...|+ +-++++|+|.++-.-...-. .+...|. ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 555442 221112233333444444442 23588899887543221111 2223332 23455667789
Q ss_pred CCChHHH---HHhCCCCC-CCcEecCCCChHHHHHHHHHhh
Q 036168 307 TRSNKVA---SIMGTMRG-TAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 307 tR~~~~~---~~~~~~~~-~~~~~l~~l~~~~a~~L~~~~a 343 (846)
||-.-.. ........ ..++-++.++-++-.++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9854221 22222111 1245666777777777777665
No 272
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.55 E-value=0.01 Score=59.14 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=31.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF 233 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 233 (846)
..-.++.|+|.+|+||||+|.+++... ...-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCC
Confidence 345799999999999999999988642 2223357788765444
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.54 E-value=0.0016 Score=71.48 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+++|.++.+++|++.|.....+-...-+++.++|++|+||||||+.+.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 68999999999999984432222245679999999999999999999873
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0062 Score=69.81 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=88.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC-----CeeEEEEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF-----KLKIWICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 238 (846)
+..+||++|++++++.|..... + --.++|.+|+|||+++.-++... +.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---N---NPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---N---NPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---C---CCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----------
Confidence 3479999999999999976532 1 12468999999999997777521 11111 111111
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC---------ChhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE---------DPKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
-++..-..+......-.+.+...+.+.-+.++..|++|.++.. ..+.-.-+++.|..+. --.|=.||-+
T Consensus 232 -LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~ 309 (786)
T COG0542 232 -LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLD 309 (786)
T ss_pred -ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHH
Confidence 0111112222222222333334444443455899999998642 1233344566665543 2224445543
Q ss_pred hHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 310 NKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 310 ~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
+ -.+... ...+...+.+..-+.+++..+++...
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2 221111 11234578899999999999888665
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.53 E-value=0.03 Score=53.80 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=65.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEec--CcccHHHHH------HHHHHHhc-----CCCCCCCCHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVS--EDFEQRQIM------TKIIKSIT-----GQNPGDLDTDQ 258 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~~------~~i~~~l~-----~~~~~~~~~~~ 258 (846)
.+++|.|..|.|||||++.++-.. ......+++.-. ...+..... .++++.++ .......+..+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 589999999999999999998632 123334443211 111221111 11333332 11222333333
Q ss_pred HH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CC-CcEEEEeCCChHHHHH
Q 036168 259 LR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AK-GSKILVTTRSNKVASI 315 (846)
Q Consensus 259 ~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iiiTtR~~~~~~~ 315 (846)
.+ -.+...+-..+-++++|+.-. .|....+.+...+... .. |..||++|.+......
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33 234455566778999998642 2444445555544432 12 6678999988776543
No 276
>PRK06696 uridine kinase; Validated
Probab=96.53 E-value=0.0029 Score=63.20 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.|++.+++|.+.+..... ..+.+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 367778888888865322 45789999999999999999999874
No 277
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.53 E-value=0.025 Score=65.82 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHHhcCCCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.++.|.+...+++.+.+...... ...-++-|.|+|++|.|||++|+.++.. ....| +.++.. +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----D 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----H
Confidence 35677776666555544221100 0012345899999999999999999873 22222 222211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC----------hhhHHHHHH-h---hCCC--CCCc
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED----------PKVWDELKS-L---LLGS--AKGS 301 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~-~---l~~~--~~gs 301 (846)
+. ....+ .....+...+.......+.+|++|+++... ...++.... . +... ..+.
T Consensus 221 ~~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 11101 112223333333334567899999985421 112222222 2 2221 2344
Q ss_pred EEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 302 KILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 302 ~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
-+|.||..++..... ....-.+.+.+..-+.++-.+++..+...
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 555677766543321 11122456788888888888888877643
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.53 E-value=0.021 Score=57.65 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=53.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-------------------
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ------------------- 249 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------------------- 249 (846)
+...++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+++.+ ++-.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~~~-~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQMES-VKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHHHH-CCCChhHHHhCCCceEEeccccc
Confidence 446799999999999999999986532 12 2345778877544 4445444322 2100
Q ss_pred -CCCCCCHHHHHHHHHHHhcC-ceEEEEeeccC
Q 036168 250 -NPGDLDTDQLRRILRDRLNG-EIYLLVMDDVW 280 (846)
Q Consensus 250 -~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 280 (846)
.....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01112335566666666643 55589999874
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.52 E-value=0.013 Score=56.23 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=61.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc--CCC------------CCCCCHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT--GQN------------PGDLDTD 257 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~------------~~~~~~~ 257 (846)
.+++|.|..|.|||||++.++-... .....+++.-. +.......+-..+. .+. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 4899999999999999999986321 11223333211 11111111111110 000 1122333
Q ss_pred HHH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 258 QLR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 258 ~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
+.+ -.+...+-.++=++++|+... .|....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 322 224445556778899998643 233444444444433223677999998887664
No 280
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.52 E-value=0.012 Score=69.48 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=76.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|+...+.++.+.+.... ....-|.|+|..|+|||++|+.+++.... .. ...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC-hhHhhhhhc
Confidence 468999998988877776443 22347889999999999999999874211 11 123444444321 111222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCCh
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRSN 310 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~~ 310 (846)
....+...+. . ......+. ....-.|+||+|..........+...+.... .+.|||.||...
T Consensus 449 g~~~~~~~g~-~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA-S-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc-c-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 2111110010 0 01111221 2234579999998887777777877774321 345888888653
No 281
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.092 Score=50.73 Aligned_cols=160 Identities=22% Similarity=0.205 Sum_probs=88.2
Q ss_pred ccccc-hHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 165 EIIGR-DEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 165 ~~vGr-~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
++||. +..+++|.+.+.-+... +-.+++-+.++|++|.|||-||++|+++ ....|+.+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 35654 55666666554322110 0145677889999999999999999973 23456666654
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC-----------ChhhHHH---HHHhhCCC--CC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE-----------DPKVWDE---LKSLLLGS--AK 299 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~~~~---l~~~l~~~--~~ 299 (846)
++.+..+. .. ....+.+.-.. ..-+-.|+.|.++.. +.+.-.. +...+..+ .+
T Consensus 216 elvqk~ig----eg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYIG----EG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHhh----hh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 22222221 10 11111111111 234568888887542 1222222 33334432 45
Q ss_pred CcEEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 300 GSKILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
.-+||+.|..-++.... ....-++.++.++-+++.-.+++.-+...
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence 67899888776654332 22233456888888888778888766633
No 282
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.51 E-value=0.014 Score=61.85 Aligned_cols=131 Identities=12% Similarity=0.145 Sum_probs=70.2
Q ss_pred cccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH-HHHH
Q 036168 166 IIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT-KIIK 244 (846)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-~i~~ 244 (846)
++|....++++.+.+.... ....-|.|+|..|+||+++|+.+++...... ...+-|++..- + ...+. .++.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~--~pfv~vnc~~~-~-~~~l~~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQ--GPLVKLNCAAL-S-ENLLDSELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccC--CCeEEEeCCCC-C-hHHHHHHHhc
Confidence 4677777777777775543 2234678999999999999999986422111 12233444322 1 22222 2221
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCC
Q 036168 245 SITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRS 309 (846)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 309 (846)
.-.+...+... .....+. ....-.|+||++..........|...+.... ...+||.||..
T Consensus 73 ~~~g~~~ga~~--~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 73 HEAGAFTGAQK--RHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred cccccccCccc--ccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11010000000 0000111 2234579999998877777777777765321 23478887753
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.50 E-value=0.011 Score=57.35 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSIT 247 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 247 (846)
++++.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhc
Confidence 4799999999999999998888754333 334556665322 234455555666654
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.50 E-value=0.0062 Score=59.30 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=54.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh---
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL--- 267 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 267 (846)
-++..|.|.+|.||||+++.+....... . ..+.+..........+... .+. ....+ ...+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g--~~v~~~apT~~Aa~~L~~~----~~~---~a~Ti---~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA-G--KRVIGLAPTNKAAKELREK----TGI---EAQTI---HSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT-T----EEEEESSHHHHHHHHHH----HTS----EEEH---HHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC-C--CeEEEECCcHHHHHHHHHh----hCc---chhhH---HHHHhcCCccc
Confidence 3588899999999999999987643332 2 2333333333222222222 210 00011 11111000
Q ss_pred ------cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 268 ------NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 268 ------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
..+.-+||+|++...+...+..+...... .|+++|+.-=..
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999988877777777776655 467888765433
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.47 E-value=0.036 Score=52.46 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=60.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhh-cc--CC---eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQ-EH--FK---LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLR-RILR 264 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-~~--f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~ 264 (846)
.+++|+|..|.|||||++.+.-..... +. ++ .+.++.-........+...+.- ......+..+.+ -.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHHHH
Confidence 489999999999999999998642211 11 11 1222211111111122222211 012233333332 2344
Q ss_pred HHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 265 DRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 265 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
..+-.++=++++|+--. .|....+.+...+... +..||++|.+.....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55556677889997532 2334444444444432 356888888876543
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.012 Score=60.96 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=27.9
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhh-ccCCeeEEEEe
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQ-EHFKLKIWICV 229 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~ 229 (846)
..++++|+|++|+||||++..++...... +.+ .+..++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence 45799999999999999999998754333 223 3455554
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.46 E-value=0.03 Score=51.45 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=58.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHhcCc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLR-RILRDRLNGE 270 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~k 270 (846)
.+++|.|..|.|||||++.+..... .....+|+.-.. .+. -. ...+..+.+ -.+...+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~-~~-~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIG-YF-EQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEE-EE-ccCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999986422 123333332100 000 00 002222222 2234455566
Q ss_pred eEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 271 IYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 271 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
+-++++|+.-. .|....+.+...+... +..||++|.+.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 67899998642 3444555555555433 2468888888766544
No 288
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.43 E-value=0.0088 Score=56.38 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=44.0
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--ce
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG--EI 271 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr 271 (846)
+.|.|.+|+|||++|.++... ....++|+.-...++. +....|...... .+......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~-R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKR-RPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHh-CCCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999998753 2234666655555543 344443332221 22233322333333333321 23
Q ss_pred EEEEeecc
Q 036168 272 YLLVMDDV 279 (846)
Q Consensus 272 ~LlVlDdv 279 (846)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999986
No 289
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.43 E-value=0.012 Score=57.51 Aligned_cols=111 Identities=15% Similarity=0.238 Sum_probs=58.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH-HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR-QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
.+|.|+|+.|.||||++..+... ........++. +..+.... .-...++.+ ... ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q---~~v-g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQ---REV-GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeee---ccc-CCCccCHHHHHHHHhcCC
Confidence 37899999999999999887763 22223333332 22221110 000011110 010 111233455666767666
Q ss_pred eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 271 IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
+=.+++|++- +.+......... ..|..++.|+...+...
T Consensus 75 pd~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 7799999994 444444333332 23556888887665544
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.42 E-value=0.0065 Score=63.20 Aligned_cols=84 Identities=21% Similarity=0.194 Sum_probs=52.8
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-----NPGDLDTDQLRRIL 263 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 263 (846)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .++.++-. -....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 44579999999999999999988764 22334567899887766653 22222211 01122445555555
Q ss_pred HHHhc-CceEEEEeecc
Q 036168 264 RDRLN-GEIYLLVMDDV 279 (846)
Q Consensus 264 ~~~l~-~kr~LlVlDdv 279 (846)
...++ +..-++|+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55443 34569999987
No 291
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.04 Score=60.38 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=52.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE-QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
.+++.++|++|+||||++..++........-..+..++...... ..+-+....+.++-......+..++...+.. +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 46899999999999999988876433112223455665432211 1111222222222111122334455555543 23
Q ss_pred ceEEEEeeccCC--CChhhHHHHHHhhC
Q 036168 270 EIYLLVMDDVWN--EDPKVWDELKSLLL 295 (846)
Q Consensus 270 kr~LlVlDdv~~--~~~~~~~~l~~~l~ 295 (846)
..=++++|..-. .+....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 245888996533 33344455555554
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0007 Score=66.02 Aligned_cols=83 Identities=19% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCCCcEEecCCc--CCCccccccccccCCCcEEEecccccccc--cccCCCCCCCCEeccccccCcccc---hhhccCCC
Q 036168 623 LHSLQTVCLGGC--RELEELPKDIRYLVNLRMFVVSTKQKSLL--ESGIGCLSSLRFLMISDCENLEYL---FDDIDQLC 695 (846)
Q Consensus 623 l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~ 695 (846)
|++|+.|.++.| .....++....++++|++|+++.|.+..+ ...+..+.+|..|++.+|.....- -..+.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 334444444444 22222333333445555555555544421 112344555666666665443210 12344567
Q ss_pred CcCEEEeecC
Q 036168 696 VLRTIFIADC 705 (846)
Q Consensus 696 ~L~~L~l~~~ 705 (846)
+|++|+-.+.
T Consensus 144 ~L~~LD~~dv 153 (260)
T KOG2739|consen 144 SLKYLDGCDV 153 (260)
T ss_pred hhcccccccc
Confidence 7777765544
No 293
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.39 E-value=0.011 Score=59.89 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhcc----CCeeEEEEecCcccHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEH----FKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 238 (846)
..-.++.|+|.+|+|||++|.+++........ -..++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 34579999999999999999999743222211 256889988776665443
No 294
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.051 Score=52.74 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCC-------CcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGE-------SETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~-------~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+++-|-+..++++.+.+.-+.... -..++-+..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 457788999999998875443210 12356788999999999999998876
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.051 Score=57.20 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=55.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc--cHHHHHHHHHHHhcCCC---CCCCCHHH-HHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF--EQRQIMTKIIKSITGQN---PGDLDTDQ-LRRIL 263 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 263 (846)
++.+|.++|++|+||||++.+++.... ...+. ++.+.. ..+ ...+-+......++-.. ....+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999888886432 22333 333432 222 12223344444443211 11122222 22333
Q ss_pred HHHh-cCceEEEEeeccCCC--ChhhHHHHHHhhCCCCCCcEEEE
Q 036168 264 RDRL-NGEIYLLVMDDVWNE--DPKVWDELKSLLLGSAKGSKILV 305 (846)
Q Consensus 264 ~~~l-~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iii 305 (846)
...- .+.. ++++|-.-.. +...++++........+...++|
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLV 259 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFV 259 (336)
T ss_pred HHHHhCCCC-EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEe
Confidence 3222 2333 8999987544 34455565554433233333443
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.38 E-value=0.016 Score=54.72 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=62.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC--cccHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE--DFEQRQIMTKIIKSITGQNPGDLDTDQLR-RILRDRLN 268 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~ 268 (846)
.+++|.|..|.|||||.+.++-.. ......+++.-.. ..+..+..+. .+. .. ...+..+.+ -.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~---~i~-~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRA---GIA-MV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhc---CeE-EE-EecCHHHHHHHHHHHHHh
Confidence 489999999999999999998632 2233444442211 1111111111 110 00 003333322 23444555
Q ss_pred CceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHH
Q 036168 269 GEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASI 315 (846)
Q Consensus 269 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~ 315 (846)
.++-++++|+.-. .|....+.+...+... ..|..||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6678899998643 2444445555544322 236678999998765443
No 297
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0013 Score=64.31 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=50.9
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCC--CcccccchhhhcCCCCcEEecCCcCCC--ccccccccccC
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGH--DKIKKLPNSICELHSLQTVCLGGCREL--EELPKDIRYLV 648 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~ 648 (846)
...+..|+.|++.++.++++ ..+..+++|++|.++.| .....++.....+++|++|++++|+.- +.++ .+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 33444555555555554433 22344566666666655 333344444445566666666665521 1111 234455
Q ss_pred CCcEEEeccccccccc----ccCCCCCCCCEecccc
Q 036168 649 NLRMFVVSTKQKSLLE----SGIGCLSSLRFLMISD 680 (846)
Q Consensus 649 ~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~ 680 (846)
+|..|++.+|..+.+. ..+.-+++|.+|+-..
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 5566666555444221 1233445555555443
No 298
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.021 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++.++|++|+||||++.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 299
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.33 E-value=0.012 Score=61.17 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=52.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-----NPGDLDTDQLRRIL 263 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 263 (846)
+.-+++.|+|++|+||||||.++.... ...-..++|++..+.++.. .++.++-. .......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 445799999999999999998887642 2233457788777665553 22333211 01122345555555
Q ss_pred HHHhc-CceEEEEeeccC
Q 036168 264 RDRLN-GEIYLLVMDDVW 280 (846)
Q Consensus 264 ~~~l~-~kr~LlVlDdv~ 280 (846)
....+ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 445699999873
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.33 E-value=0.044 Score=59.87 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=45.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSITGQNP---GDLDTDQLRRILRD 265 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 265 (846)
.+.+|.++|.+|+||||.|..++.... +..+ .+..+++... ....+.+..+...++.... ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 478999999999999999999987433 2223 2333433221 1123334444554432211 11232332222223
Q ss_pred HhcCceEEEEeecc
Q 036168 266 RLNGEIYLLVMDDV 279 (846)
Q Consensus 266 ~l~~kr~LlVlDdv 279 (846)
.+.+. -++|+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33333 56888876
No 301
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.33 E-value=0.023 Score=64.40 Aligned_cols=136 Identities=13% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
...++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+++..... -...+.|++..-.+ ..+-..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh-HHHHHHh
Confidence 4678999999999988887654 224578899999999999999998742211 11234455544321 1112222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCCh
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRSN 310 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~~ 310 (846)
+....+.-.+... .....+. ....-.|+||++..........|...+.... ...|||.||...
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 2111111000000 0000111 1223357999998888777778887775431 245888887643
No 302
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.32 E-value=0.0054 Score=57.38 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=24.1
Q ss_pred cCCCcEEEeccccccccc--ccCCCCCCCCEeccccccCcccc---hhhccCCCCcCEEEeec
Q 036168 647 LVNLRMFVVSTKQKSLLE--SGIGCLSSLRFLMISDCENLEYL---FDDIDQLCVLRTIFIAD 704 (846)
Q Consensus 647 l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~ 704 (846)
+++|..|.+.+|.+..+. ..+..|+.|++|.+-+|+....- --.+..+|+|+.|+..+
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 344444444444443211 12344455555555544322110 01234555555555544
No 303
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.32 E-value=0.012 Score=59.84 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=38.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.+.-|+|.+|+|||+||.+++-...... .=..++|++-...++...+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 46999999999999999988864322221 12358899988888876664 455543
No 304
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.32 E-value=0.012 Score=54.14 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 305
>PRK08233 hypothetical protein; Provisional
Probab=96.28 E-value=0.011 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.021 Score=54.44 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=62.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc--CCC---CCC--------CCHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT--GQN---PGD--------LDTDQ 258 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~---~~~--------~~~~~ 258 (846)
.+++|+|..|.|||||++.++-... .....+++.-....... ..+...+. .+. ... .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 4899999999999999999986321 22333433211000000 01111110 000 000 22222
Q ss_pred HHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHHh
Q 036168 259 LRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 259 ~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~~ 316 (846)
.+. .+...+..++-++++|+.-. .|....+.+...+... ..|..||++|.+.......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 222 34556667778999998633 2344444444444332 2367799999988765543
No 307
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.051 Score=61.66 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHH---hcCCC-----CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELL---MQTND-----GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L---~~~~~-----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++.|.+...+.+.+.+ ....+ +- ...+.+.++|++|.|||.||+++++. ...+|- .+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~-~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~--- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGL-RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS--- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCC-CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH---
Confidence 34556665555554443 22211 11 34568999999999999999999982 333332 22111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC------C-----hhhHHHHHHhhCCC--CCCcE
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE------D-----PKVWDELKSLLLGS--AKGSK 302 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~-----~~~~~~l~~~l~~~--~~gs~ 302 (846)
.++... -......+...+...-+..+..|++|+++.- + .....++...+... ..+..
T Consensus 311 -----~l~sk~-----vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 -----ELLSKW-----VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred -----HHhccc-----cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 111111 1112233333444444678899999998431 1 12334444445432 23334
Q ss_pred EEEeCCChHHHHHhCC--CCCCCcEecCCCChHHHHHHHHHhhc
Q 036168 303 ILVTTRSNKVASIMGT--MRGTAGYKLEGLPYESCLSLFMKCAF 344 (846)
Q Consensus 303 iiiTtR~~~~~~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~ 344 (846)
||-||..+......-. ..-...+.+..-+.++..+.|..+..
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5556655543332111 12245788889999999999999884
No 308
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.26 E-value=0.021 Score=53.35 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=64.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeE--EEEecCcccHHHHHHHHHHHhc----CC--CCCCCC-------
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKI--WICVSEDFEQRQIMTKIIKSIT----GQ--NPGDLD------- 255 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~l~----~~--~~~~~~------- 255 (846)
...|-|++..|.||||.|..++-.. ....+...+ |+.-.........+..+ .+. +. .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 3578888889999999997776531 222333221 33322223333444433 111 11 111111
Q ss_pred HHHHHHHHHHHhcCceE-EEEeeccCC---CChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 256 TDQLRRILRDRLNGEIY-LLVMDDVWN---EDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 256 ~~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
..+..+..++.+...+| |+|||.+-. ...-..+++...+...+++..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11223334445544444 999998731 12233456777777777788999999986
No 309
>PRK09354 recA recombinase A; Provisional
Probab=96.23 E-value=0.016 Score=60.77 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=54.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-----NPGDLDTDQLRRIL 263 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 263 (846)
+.-+++-|+|++|+||||||.++.... ...-..++|++....+++. .++.++-. .....+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 445799999999999999999887642 2334567899887777653 22333211 01112355555555
Q ss_pred HHHhc-CceEEEEeeccC
Q 036168 264 RDRLN-GEIYLLVMDDVW 280 (846)
Q Consensus 264 ~~~l~-~kr~LlVlDdv~ 280 (846)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 345699999873
No 310
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0043 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcch
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
..-|+|+|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999753
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.21 E-value=0.063 Score=55.59 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=36.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT 247 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 247 (846)
-.++.|.|.+|+||||++.+++..... .+-..++|++... +..++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 358889999999999999988764322 2123577887655 34556666655543
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.045 Score=58.27 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=47.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
..+++++|+.|+||||++.+++...........+..++.... ....+-++...+.++.......+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 469999999999999999999874322222234555543221 22333344444444322111122223333333 3444
Q ss_pred ceEEEEeeccCC
Q 036168 270 EIYLLVMDDVWN 281 (846)
Q Consensus 270 kr~LlVlDdv~~ 281 (846)
+ =++++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566998743
No 313
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.19 E-value=0.029 Score=55.81 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=73.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC-----cccHHHHHHHHHHHhcCC------CCCCCCHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE-----DFEQRQIMTKIIKSITGQ------NPGDLDTDQL 259 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~------~~~~~~~~~~ 259 (846)
-.+++|+|..|.||||+++.+..- ...-.+.+++.-.. .....+...++++.++.. -+...+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 358999999999999999999863 22223344443211 122334455566655421 2233344444
Q ss_pred HH-HHHHHhcCceEEEEeeccCCC-ChhhHHHHHHhhCC--CCCCcEEEEeCCChHHHHHhCC
Q 036168 260 RR-ILRDRLNGEIYLLVMDDVWNE-DPKVWDELKSLLLG--SAKGSKILVTTRSNKVASIMGT 318 (846)
Q Consensus 260 ~~-~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~~~~~~~~ 318 (846)
++ .|.+.+.-++-++|.|..-.. +...-.++...+.. ...|...+..|.+-.+...+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 43 355667788899999975332 22222333333322 2346678888998888877654
No 314
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.24 Score=51.40 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=90.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcch---h-----hhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQ---S-----VQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRI 262 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~---~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 262 (846)
.++..++|..|+||+++|..+.+.. . ...+=+...++...+ .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 4567799999999999998887632 0 011111122221101 11222333322
Q ss_pred HHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHH
Q 036168 263 LRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCL 336 (846)
Q Consensus 263 l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~ 336 (846)
+.+.- .+++=++|+|++..........+...+...++.+.+|++|.+. .+...+.. +...+++.++++++..
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S--Rc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS--RCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh--CeEEEECCCCCHHHHH
Confidence 22211 2466789999997777777788888888877888888766543 33332222 2357999999999988
Q ss_pred HHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHH
Q 036168 337 SLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRT 374 (846)
Q Consensus 337 ~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (846)
+.+.... . ++ +.+..++...+|.=.|+..
T Consensus 156 ~~l~~~~----~--~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN----K--EK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC----C--Ch---hHHHHHHHHcCCHHHHHHH
Confidence 7776531 1 11 3355666666663344444
No 315
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.15 E-value=0.019 Score=60.04 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=40.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh----ccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ----EHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
..-+++-|+|++|+|||+|+.+++-..... ..=..++|++..+.++++.+.+ +++.+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 345799999999999999998876422221 1123688999888888877654 45544
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.033 Score=53.04 Aligned_cols=119 Identities=23% Similarity=0.221 Sum_probs=61.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc--ccHHHHHHHHHHHhcCCCCCC---------CCHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED--FEQRQIMTKIIKSITGQNPGD---------LDTDQLR 260 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~---------~~~~~~~ 260 (846)
.+++|.|+.|.|||||.+.++.-.. .....+++.-... ...... +..+..+ .+...- .+..+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~-~~~i~~~-~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL-RKNIAYV-PQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH-HhhEEEE-cCCchhccchHHHHhhCHHHHH
Confidence 5899999999999999999986321 2233333321100 011111 1100000 000000 1222222
Q ss_pred -HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 261 -RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 261 -~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
-.+...+..++-+++||+-.. .|....+.+...+.....+..||++|.+.+....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 224445556777999998643 2444444555544433335678999988876654
No 317
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.13 E-value=0.034 Score=56.27 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=50.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcc-cHHHHHHHHHHHhcC-------CCCCCCCHHH----
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDF-EQRQIMTKIIKSITG-------QNPGDLDTDQ---- 258 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 258 (846)
+-++|.|.+|.|||||++.+++. .+.+|. .++++-+.+.. +..++.+++...-.. ...+.....+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999984 444453 45555565544 344555555432100 0111111111
Q ss_pred -HHHHHHHHh--c-CceEEEEeecc
Q 036168 259 -LRRILRDRL--N-GEIYLLVMDDV 279 (846)
Q Consensus 259 -~~~~l~~~l--~-~kr~LlVlDdv 279 (846)
..-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112234444 3 89999999998
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.11 E-value=0.041 Score=52.38 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=57.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE------ecCcccHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC------VSEDFEQRQIMTKIIKSITGQNPGDLDTDQL-RRILR 264 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~ 264 (846)
.+++|.|+.|.|||||++.+..-.. .....+++. +.+... .+..+. .-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 4999999999999999999886321 112222221 111110 222222 22344
Q ss_pred HHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC--CCCcEEEEeCCChHHHHHh
Q 036168 265 DRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS--AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 265 ~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtR~~~~~~~~ 316 (846)
..+..++-++++|+.-. .+....+.+...+... ..+..||++|.+.......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 45556778999998633 2333444444444321 1235688888887765543
No 319
>PRK05439 pantothenate kinase; Provisional
Probab=96.11 E-value=0.033 Score=57.68 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=43.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT-GQNPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l 267 (846)
..+.+|+|.|.+|+||||+|+.+.........-..+.-++...-......+.+- ..+. ...+...+.+.+.+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHHH
Confidence 457899999999999999999887632111011123333333322222222110 0011 11234556777777666665
Q ss_pred cCce
Q 036168 268 NGEI 271 (846)
Q Consensus 268 ~~kr 271 (846)
.++.
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 5554
No 320
>PRK13695 putative NTPase; Provisional
Probab=96.11 E-value=0.012 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 321
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.012 Score=56.89 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=23.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999873
No 322
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.10 E-value=0.0058 Score=57.81 Aligned_cols=89 Identities=30% Similarity=0.313 Sum_probs=52.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH---HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ---RQIMTKIIKSITGQNPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 267 (846)
..++.+.|+.|+|||.||+.+++.... +.....+-++.+.-.+. ...+..+.... .. ...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~----~~--~v~---------- 65 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGSP----PG--YVG---------- 65 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT----TC--HHH----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhcc----cc--eee----------
Confidence 457889999999999999999874221 33344555555544331 11111111111 00 000
Q ss_pred cCceEEEEeeccCCCCh-----------hhHHHHHHhhCC
Q 036168 268 NGEIYLLVMDDVWNEDP-----------KVWDELKSLLLG 296 (846)
Q Consensus 268 ~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 296 (846)
....-+|+||+++.... ..+..|...+..
T Consensus 66 ~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 66 AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 00112999999988888 788888887753
No 323
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.08 E-value=0.086 Score=51.58 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHhcCceEEEEeeccC-CCChhhHHHHHHhhCCC--CCCcEEEEeCCChHHHHHhC
Q 036168 260 RRILRDRLNGEIYLLVMDDVW-NEDPKVWDELKSLLLGS--AKGSKILVTTRSNKVASIMG 317 (846)
Q Consensus 260 ~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iiiTtR~~~~~~~~~ 317 (846)
.-.|.+.+-..+-+|+-|+-- ..|...-+.+...+... ..|..||+.|.++.++..+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 345667777888899999642 12333334444444432 34778999999999998754
No 324
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.06 E-value=0.034 Score=52.83 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=60.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhcch---hhhcc---CC--eeEEEEecCcccHHHHHHHHHHHhcCC------CCCCCCHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQ---SVQEH---FK--LKIWICVSEDFEQRQIMTKIIKSITGQ------NPGDLDTD 257 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~ 257 (846)
.+++|+|+.|+|||||.+.+..+. .+... |. .+.|+ .+ .+.+..+.-. .....+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999886321 11101 10 12222 11 3444444321 11222333
Q ss_pred HHH-HHHHHHhcCc--eEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHH
Q 036168 258 QLR-RILRDRLNGE--IYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVAS 314 (846)
Q Consensus 258 ~~~-~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~ 314 (846)
+.+ -.+...+..+ +-++++|+.-. .+....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 322 2233444455 67888897633 2444444444444321 24667999999887654
No 325
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.045 Score=58.78 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=56.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhc--cCCeeEEEEecCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQE--HFKLKIWICVSEDF-EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR 266 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 266 (846)
.+++|.++|+.|+||||.+.+++....... +-..+..++..... ....-++...+.++-......+...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999987433221 11234445443221 111223333443332222223444554444432
Q ss_pred hcCceEEEEeeccCCCC--hhhHHHHHHhhCCC
Q 036168 267 LNGEIYLLVMDDVWNED--PKVWDELKSLLLGS 297 (846)
Q Consensus 267 l~~kr~LlVlDdv~~~~--~~~~~~l~~~l~~~ 297 (846)
...-++++|..-... ......+...+...
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 345689999875432 22345555555543
No 326
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.02 E-value=0.029 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987754
No 327
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.01 E-value=0.04 Score=58.12 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=40.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh----ccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ----EHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
..-.+.-|+|.+|+|||+|+..++-..... +.-..++|++..+.++++.+.+ +++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERF 184 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHc
Confidence 345788999999999999998886432221 1124688999988888877654 44444
No 328
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.00 E-value=0.033 Score=53.13 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=59.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC--cccHHHHHHHHHHHhcCCCCCC---------CCHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE--DFEQRQIMTKIIKSITGQNPGD---------LDTDQLR 260 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~---------~~~~~~~ 260 (846)
.+++|+|..|.|||||++.++-... .....+++.-.. ..........+ ..+ .+...- .+..+.+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i-~~~-~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHV-GYL-PQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhhe-EEE-CCCCccccCcHHHHCcCHHHHH
Confidence 4899999999999999999986321 222333322110 01111111110 000 111000 1222222
Q ss_pred -HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC-CCCCcEEEEeCCChHHHH
Q 036168 261 -RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG-SAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 261 -~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~~~ 314 (846)
-.+...+-.++=++++|+... .|......+...+.. ...|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223444556667899998643 233334444444432 123667999998887654
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.00 E-value=0.057 Score=51.52 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998874
No 330
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.026 Score=62.73 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=46.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc--cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF--EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 267 (846)
...-|.|.|+.|+|||+||+++++... +..+-.+.+++++.-. ..+.++..+ ...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 356789999999999999999998654 3343344555554332 111222111 12233445
Q ss_pred cCceEEEEeeccC
Q 036168 268 NGEIYLLVMDDVW 280 (846)
Q Consensus 268 ~~kr~LlVlDdv~ 280 (846)
.-.+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6678899999984
No 331
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.021 Score=55.57 Aligned_cols=50 Identities=28% Similarity=0.250 Sum_probs=34.8
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+++-|=.+.++++.+.+..+--. +-..++-|.++|++|.|||-+|++|++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 44566777888877765322100 002356788999999999999999999
No 332
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.032 Score=53.53 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=60.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc--cc--HHHHHHHHHHHhcCC--CCCC----------CC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED--FE--QRQIMTKIIKSITGQ--NPGD----------LD 255 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~--~~~~~~~i~~~l~~~--~~~~----------~~ 255 (846)
.+++|.|..|.|||||++.++-.. ......+.+.-... .+ .... ..-+..+... .... .+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCCCCHHHheeecCC
Confidence 489999999999999999998532 12233333311100 00 1111 1100000000 0001 22
Q ss_pred HHHHH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-C-CCcEEEEeCCChHHHHH
Q 036168 256 TDQLR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-A-KGSKILVTTRSNKVASI 315 (846)
Q Consensus 256 ~~~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~-~gs~iiiTtR~~~~~~~ 315 (846)
..+.+ -.+...+..++=++++|+--. .|....+.+...+... . .|..||++|.+......
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 22222 224455566778999997633 2444445555544432 1 25678888888766553
No 333
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.95 E-value=0.0085 Score=62.04 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=45.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|+|.++.++++++.+..+..+....-+++.+.|+.|.||||||+.+-+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999998876554467899999999999999999988763
No 334
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.95 E-value=0.033 Score=55.91 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+.+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 335
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.94 E-value=0.026 Score=60.24 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=66.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|+++....+...+... +.+.+.|.+|+|||+||+.++.. ... ..+++.+.......++.-...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCchh
Confidence 34889888888877777542 46789999999999999999873 222 235666666666665543332
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLL 295 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 295 (846)
-...... .....+. ..-+.++++|.++......-..+...+.
T Consensus 91 ~~~~~~~----------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 91 YAALLLE----------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred Hhhhhcc----------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 2211000 0000000 1111599999998887666666666554
No 336
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.92 E-value=0.023 Score=55.55 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=59.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHH---HHHHHH-
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLR---RILRDR- 266 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~~- 266 (846)
.+++.|.|+.|.||||+.+.+....- ..+. ..++++... .-.....+...+...+.......... ..+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~-la~~--G~~vpa~~~--~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAI-MAQI--GCFVPAEYA--TLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HHHc--CCCcchhhc--CccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 36899999999999999988864321 1111 112211110 00122222222221111111111110 111111
Q ss_pred -hcCceEEEEeeccCCCC-hhh----HHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCC
Q 036168 267 -LNGEIYLLVMDDVWNED-PKV----WDELKSLLLGSAKGSKILVTTRSNKVASIMGTM 319 (846)
Q Consensus 267 -l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~ 319 (846)
+..++-|+++|...... ... ...+...+.. .|+.+|++|.+.+++......
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~~ 160 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGNK 160 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhcC
Confidence 23567899999974321 111 1122333332 277899999999988876543
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.92 E-value=0.028 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 338
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.92 E-value=0.021 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 339
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.16 Score=56.77 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=93.2
Q ss_pred CccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++-|..+..+.+.+.+.-+..- .-....-|.++|++|.|||-||.+++.... .-++++.++
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 34556666666666655432210 001234578999999999999998886321 225666554
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------ChhhHHHHHHhhCC--CCCCcEE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPKVWDELKSLLLG--SAKGSKI 303 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~~--~~~gs~i 303 (846)
+++.+-+ |. +.+.+.....+.-..++++|+||..+.. ......++...+.+ +-.|--|
T Consensus 736 ElL~KyI----Ga-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ELLSKYI----GA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred HHHHHHh----cc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2332222 21 2333444444444679999999988542 12344455555543 2456666
Q ss_pred EEeCCChHHHHH--hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 304 LVTTRSNKVASI--MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 304 iiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
+-.|..++.... ....+-++.+.-+.-++.+-.++|...+.....+.+-++ +.++.+.+|..
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl----~~~a~~T~g~t 870 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL----ECLAQKTDGFT 870 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch----HHHhhhcCCCc
Confidence 654444443221 111111222333334556667777766632222222222 34555555543
No 340
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.89 E-value=0.061 Score=53.81 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=31.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
..++.|.|.+|+||||+|.++.... .+.. ..++|++. ..+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 4599999999999999987766532 1222 34566663 33455666655
No 341
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.88 E-value=0.087 Score=52.70 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=68.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhc-----------c-----C-CeeEEEEec-----------------------
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQE-----------H-----F-KLKIWICVS----------------------- 230 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-----------~-----f-~~~~wv~~~----------------------- 230 (846)
-.+++|.|+.|+|||||.+.++.-..... . + ....|+.-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 36999999999999999999985211000 0 0 011222111
Q ss_pred ---CcccHHHHHHHHHHHhc-----CCCCCCCCHHHHH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC--CC
Q 036168 231 ---EDFEQRQIMTKIIKSIT-----GQNPGDLDTDQLR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG--SA 298 (846)
Q Consensus 231 ---~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~ 298 (846)
......+...+.++.++ .......+-.+.+ -.|...|..+.=+++||.--. -|...-.++...+.. ..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 01112234444455543 2334444444444 345566777778899996421 111111222222222 13
Q ss_pred CCcEEEEeCCChHHHHHhCC
Q 036168 299 KGSKILVTTRSNKVASIMGT 318 (846)
Q Consensus 299 ~gs~iiiTtR~~~~~~~~~~ 318 (846)
.|..||+++.+.+.+...+.
T Consensus 188 ~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 188 KGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred cCCEEEEEecCHHHHHHhCC
Confidence 46779999999988876554
No 342
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.88 E-value=0.039 Score=57.92 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=38.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh---c-cCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---E-HFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
..-.++.|+|.+|+|||||+..++...... + .-..++|++..+.++... +.++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHc
Confidence 345799999999999999998887532221 1 113578998887777765 33444443
No 343
>PRK07667 uridine kinase; Provisional
Probab=95.86 E-value=0.01 Score=57.81 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666665433 33489999999999999999999874
No 344
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.85 E-value=0.029 Score=54.68 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=42.3
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCC---eeEEEEecCcccHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFK---LKIWICVSEDFEQRQIMTKIIKSI----TGQNPGDLDTDQLRRILRD 265 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~ 265 (846)
+|+|.|.+|+||||+|+.+...... ..+. ....+.............. -... .-..+...+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999874221 1222 1333333222222222221 1111 1122344567777777776
Q ss_pred HhcCceE
Q 036168 266 RLNGEIY 272 (846)
Q Consensus 266 ~l~~kr~ 272 (846)
..+++.+
T Consensus 79 L~~g~~i 85 (194)
T PF00485_consen 79 LKNGGSI 85 (194)
T ss_dssp HHTTSCE
T ss_pred HhCCCcc
Confidence 6566554
No 345
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.84 E-value=0.064 Score=51.92 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=29.3
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHH
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
+.|.|++|+|||++|.++..... + .=..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC--CHHHHHHH
Confidence 67899999999999998876422 2 224467876644 34444433
No 346
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.84 E-value=0.085 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999888753
No 347
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.82 E-value=0.075 Score=57.97 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.1
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999888874
No 348
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.035 Score=56.39 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=54.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHH-hcCCC-CCCCCHH---HHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKS-ITGQN-PGDLDTD---QLRRIL 263 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~-~~~~~~~---~~~~~l 263 (846)
+.-+++-|+|+.|.||||+|.+++-. .+..-..++|++..+.+++..+.. +... +..-. ....+.+ ++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 55689999999999999999888764 333344789999888888776543 3333 22110 1112222 233333
Q ss_pred HHHhcCceEEEEeecc
Q 036168 264 RDRLNGEIYLLVMDDV 279 (846)
Q Consensus 264 ~~~l~~kr~LlVlDdv 279 (846)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334568999987
No 349
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.79 E-value=0.018 Score=54.47 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=43.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC--CCCCC-CHHHHHHHHHHHhcC
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ--NPGDL-DTDQLRRILRDRLNG 269 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~-~~~~~~~~l~~~l~~ 269 (846)
++.|.|.+|+||||+|..+..... ...+++.-.. ....+....+....... .+... ....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999876311 1233443222 33445555554444322 11111 111233444443332
Q ss_pred ceEEEEeecc
Q 036168 270 EIYLLVMDDV 279 (846)
Q Consensus 270 kr~LlVlDdv 279 (846)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237889986
No 350
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.76 E-value=0.056 Score=57.23 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=39.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhcc----CCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEH----FKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
....++-|+|++|+|||++|.+++........ =..++|++..+.+++..+.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 34579999999999999999988754222111 13688999888877766554 33433
No 351
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.76 E-value=0.051 Score=52.36 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~ 315 (846)
+...+-.++-++++|+.-. .|....+.+...+... ..|..||++|.+......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4445556778999998633 2444444555444321 236679999998765444
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.053 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|++|+||||++.+++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999888764
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=95.72 E-value=0.088 Score=57.44 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988888764
No 354
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.72 E-value=0.033 Score=63.18 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=72.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|....+.++.+.+..... ...-|.|+|..|+||+++|+.++.... + .-...+.+++..-. .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH--
Confidence 4689999888888777654321 123578999999999999999875321 1 11122345544432 222221
Q ss_pred HHhcCCCCCCCC-H-HHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCCh
Q 036168 244 KSITGQNPGDLD-T-DQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRSN 310 (846)
Q Consensus 244 ~~l~~~~~~~~~-~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~~ 310 (846)
.+.+...+... . ......+. ....-.|+||+++.........+..++.... ...|||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 12121111100 0 00000111 1223467999998877777777777775421 134788877643
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.71 E-value=0.0067 Score=54.63 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEecCCCCcHHHHHHHHhcc
Q 036168 194 IPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~ 214 (846)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 356
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.68 E-value=0.067 Score=51.63 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999874
No 357
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.67 E-value=0.016 Score=53.20 Aligned_cols=36 Identities=28% Similarity=0.200 Sum_probs=26.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEE
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWIC 228 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 228 (846)
..+|.|+|.+|+||||||+++.+. ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999984 333333445543
No 358
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.67 E-value=0.061 Score=56.85 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=39.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh---c-cCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---E-HFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
..-.++-|+|.+|+|||++|..++-..... + .-..++|++..+.++++.+. ++++.+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~ 181 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERF 181 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHc
Confidence 345789999999999999998777432211 1 11268899999888877654 455554
No 359
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.64 E-value=0.084 Score=53.29 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=34.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
+.-.++.|.|.+|+|||++|.++.... . ..-..++|++... ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 445799999999999999998876532 1 2234577887654 445555543
No 360
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.64 E-value=0.15 Score=46.38 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=80.9
Q ss_pred cchhh--HHHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHhhcchhhh
Q 036168 2 VESFL--PLEKLMEKLGSRAFEELSLFYCVKNDAEKLKETLTTVKCVVLDAEEKQVH-NHQLRDWLEKLKDACYDAEDLL 78 (846)
Q Consensus 2 a~~~~--~~~~~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~-~~~~~~wl~~l~~~~~~~ed~l 78 (846)
||.++ +++.+++.+...+.+.......++.-+++|...++.|.-++++.+.-... +..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 45555 66778899999999999999999999999999999999999999875544 3333777889999988899888
Q ss_pred hhHHHHHHHHHHhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 036168 79 DDFEVEALRRQVMKQRSIGRNLRNFFGSSNPIAFRCRMGHQIKKIRERFDEIAN 132 (846)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~ 132 (846)
+.|.-- + ++ .+...++.++||+++.+.+.....
T Consensus 83 ~k~sk~-------------~-r~-------n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 83 EKCSKV-------------R-RW-------NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHhccc-------------c-HH-------HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 876310 0 11 112244567777777776665544
No 361
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.63 E-value=0.089 Score=56.96 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=36.6
Q ss_pred cCCccccchHHHHHHHHHHh----c-----CCCCC---CcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 162 LPSEIIGRDEDREKIIELLM----Q-----TNDGE---SETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~----~-----~~~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....++|.++.++.+...+. . ..... ......+.++|++|+|||++|+.++.
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 35678999999988876552 1 00000 01135789999999999999999986
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.62 E-value=0.05 Score=55.59 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=30.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE 231 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 231 (846)
+.-.++.|.|.+|+|||++|.+++.... + .-..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 3457999999999999999999865321 2 224577887764
No 363
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.62 E-value=0.048 Score=53.49 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.5
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
.++.+|.++||+|.||||..+.++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 557788999999999999999998753
No 364
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.25 Score=49.28 Aligned_cols=96 Identities=21% Similarity=0.357 Sum_probs=58.3
Q ss_pred CccccchHHHHHHHHHHhcCC------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
+++-|-+...+.|.+.+.-+- .+....-+-|.++|++|.||+-||++|+.... .. |++++.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH----H
Confidence 457788888888887654321 12113357889999999999999999987421 22 2344433 2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccC
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVW 280 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~ 280 (846)
+++...+. .+.+...+.+.. ..|+-+|++|.++
T Consensus 202 ----LvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 ----LVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ----HHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 22222221 233444444333 4678899999885
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.57 E-value=0.096 Score=53.45 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=59.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC---CCC----CCC-CHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG---QNP----GDL-DTDQLRRI 262 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~----~~~-~~~~~~~~ 262 (846)
...++|+|+.|.|||||.+.+..... .....+++.-.. ....+-..++...... ... ... +.... .-
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~-~~ 185 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA-EG 185 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchHH-HH
Confidence 56899999999999999999987422 222333332111 0000111222222211 100 000 11111 11
Q ss_pred HHHHh-cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 263 LRDRL-NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
+...+ .-.+=++++|.+- ..+.+..+...+. .|..||+||.+..+...
T Consensus 186 ~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 22222 2467799999983 3344555555443 47789999998766443
No 366
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.55 E-value=0.044 Score=61.64 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=73.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch-hhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ-SVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
..++|....++++.+.+.... ....-|.|.|..|+||+++|+.+++.. +.... .+.+++..-. +..+..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~p---fv~inC~~l~--e~lles- 281 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFP---FVAINCGAIA--ESLLEA- 281 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCC---EEEeccccCC--hhHHHH-
Confidence 458999998888888875433 223578899999999999999998742 11112 2233333221 222221
Q ss_pred HHHhcCCCCCCCCHHH---HHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCC
Q 036168 243 IKSITGQNPGDLDTDQ---LRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTR 308 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~---~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR 308 (846)
.+.+...+...... ....+. ....-.|+||++..........|...+.... ...|||.||.
T Consensus 282 --eLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~ 356 (526)
T TIGR02329 282 --ELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATH 356 (526)
T ss_pred --HhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccC
Confidence 22222111110000 000010 1223469999998887777777877775421 1237888775
Q ss_pred C
Q 036168 309 S 309 (846)
Q Consensus 309 ~ 309 (846)
.
T Consensus 357 ~ 357 (526)
T TIGR02329 357 C 357 (526)
T ss_pred C
Confidence 4
No 367
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.55 E-value=0.029 Score=59.83 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=38.2
Q ss_pred CCccccchHHHHHHHHHHhcC-------CC-CCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQT-------ND-GESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...++|.++.++.+...+... .+ .....++.|.++|++|+|||++|+.++..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456899998888887666532 00 01123578899999999999999999874
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.53 E-value=0.0091 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 369
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.53 E-value=0.15 Score=50.82 Aligned_cols=54 Identities=30% Similarity=0.350 Sum_probs=32.7
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHh
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 316 (846)
+...+..++-++++|+.-. .|....+.+...+.....+..||++|.+......+
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 3344556778999998643 24444455555444322346789999988766543
No 370
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.52 E-value=0.057 Score=51.31 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=64.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC---cccHHHHHHHHHHHhc----CC--CCCCCCH-----
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE---DFEQRQIMTKIIKSIT----GQ--NPGDLDT----- 256 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~----~~--~~~~~~~----- 256 (846)
...|.|+|..|-||||.|..+.-.. ....+. +..+-.-. .......+..+- .+. +. .+...+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA-VGHGKK-VGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH-HHCCCe-EEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 3588999999999999997776521 222222 33332222 223334443321 110 11 1111111
Q ss_pred --HHHHHHHHHHhcCce-EEEEeeccCC---CChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 257 --DQLRRILRDRLNGEI-YLLVMDDVWN---EDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 257 --~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
....+..++.+...+ =++|||.+-. ...-..+++...+...+++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333444554444 4999998732 12234567778887777788999999986
No 371
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.51 E-value=0.16 Score=48.65 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHHHhcCceEEEEeeccCCC-ChhhHHHHHHhhCC-CCCCcEEEEeCCChHHHHHhCC
Q 036168 260 RRILRDRLNGEIYLLVMDDVWNE-DPKVWDELKSLLLG-SAKGSKILVTTRSNKVASIMGT 318 (846)
Q Consensus 260 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~~~~~~~ 318 (846)
.-.|.+.|.=++=++.+|..-.. |++...++...+.. ...|-..|+.|.+...|..+..
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence 34466677777789999987443 45444444444332 2456778888888877776543
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.15 Score=53.83 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=57.2
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE-QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
..++++|+|+.|+||||++..++.... ... ..+.+++...... ..+-++...+.++-......+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999986432 222 3455665543222 2233333344333222223455666555543321
Q ss_pred -CceEEEEeeccCC--CChhhHHHHHHhhC
Q 036168 269 -GEIYLLVMDDVWN--EDPKVWDELKSLLL 295 (846)
Q Consensus 269 -~kr~LlVlDdv~~--~~~~~~~~l~~~l~ 295 (846)
+..=++++|-.-. .+....+++.....
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 3346888897744 23344455555443
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.49 E-value=0.009 Score=61.24 Aligned_cols=91 Identities=25% Similarity=0.361 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCC
Q 036168 174 EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGD 253 (846)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 253 (846)
..+.+.+... -+-+.++|+.|+|||++++........ ..| ...-++.+...+...++ .+++.-.....+.
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC
Confidence 4455655542 356789999999999999988763211 111 13344555544443333 3322211110000
Q ss_pred CCHHHHHHHHHHHhcCceEEEEeeccCCCC
Q 036168 254 LDTDQLRRILRDRLNGEIYLLVMDDVWNED 283 (846)
Q Consensus 254 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 283 (846)
...--.+|+.++++||+.-..
T Consensus 93 ---------~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 93 ---------VYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp ---------EEEEESSSEEEEEEETTT-S-
T ss_pred ---------CCCCCCCcEEEEEecccCCCC
Confidence 000014688999999996543
No 374
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.49 E-value=0.11 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999998874
No 375
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.49 E-value=0.071 Score=56.34 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=39.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQIMTKIIKS 245 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~ 245 (846)
....++-|+|.+|+||||++.+++....... .=..++||+..+.++...+. ++++.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~ 152 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEA 152 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHH
Confidence 3457999999999999999998875432210 11268999988888776654 34443
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.062 Score=50.32 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=61.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc--cHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF--EQRQIMTKIIKSITGQNPGDLDTDQL-RRILRDRLN 268 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~ 268 (846)
.+++|+|..|.|||||++.+.... ......+++...... ..... ...+.-- . ..+..+. .-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~-qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-P-QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEE-e-eCCHHHHHHHHHHHHHh
Confidence 589999999999999999998642 123344444321111 11111 1111100 0 0222222 223444555
Q ss_pred CceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHHh
Q 036168 269 GEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 269 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~~ 316 (846)
..+-++++|+.-. .|......+...+... ..+..+|++|.+.......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5678999998743 2333444444444321 1256789999888776654
No 377
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.47 E-value=0.051 Score=63.81 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+++..... -...+.|++..-. ...+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC-hHHHHHHhc
Confidence 4588998888888777765432 22347899999999999999998742111 1122334443322 222223333
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC---C--------CcEEEEeCCC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA---K--------GSKILVTTRS 309 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iiiTtR~ 309 (846)
....+..... ....+. ....-.|+||++..........|...+.... . ..+||.||..
T Consensus 398 g~~~~~~~~~-----~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSENG-----RLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccCC-----CCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2221100000 000000 1233469999998888777778887775431 1 3467776654
No 378
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.047 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 36788999999999999999874
No 379
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.019 Score=50.92 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=39.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
.-|.|.|.||+||||+|..++.. .. .-|++++.-....+++...=+. -.....+.+.+.+.|...+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~----~~---~~~i~isd~vkEn~l~~gyDE~---y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK----TG---LEYIEISDLVKENNLYEGYDEE---YKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH----hC---CceEehhhHHhhhcchhccccc---ccCccccHHHHHHHHHHHHhc
Confidence 45789999999999999999852 12 2366665443333333222111 122334666666666666544
No 380
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.099 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
...+|+|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998743
No 381
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.43 E-value=0.012 Score=58.30 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+..+|+|.|.+|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 382
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.41 E-value=0.052 Score=48.79 Aligned_cols=58 Identities=14% Similarity=0.330 Sum_probs=21.8
Q ss_pred hhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccc-hhhhcCCCCcEEecC
Q 036168 572 CISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLG 632 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~ 632 (846)
+|.++.+|+.+.+.. .+..++ ..|.++.+|+.+.+.++ +..++ ..|.++++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 445555555555543 233332 23445555555555532 33332 234444455555554
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.019 Score=54.55 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999874
No 384
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.40 E-value=0.19 Score=50.42 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=62.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc---------CC----------
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT---------GQ---------- 249 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---------~~---------- 249 (846)
..-.++.|.|.+|+||||+|.++.... . ..-..++|++.... ..++... ++.++ +.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 335799999999999999999876532 1 22346778876443 3333322 11111 00
Q ss_pred -----CCCCCCHHHHHHHHHHHhcC---ceEEEEeeccCCC---ChhhHHH----HHHhhCCCCCCcEEEEeCCC
Q 036168 250 -----NPGDLDTDQLRRILRDRLNG---EIYLLVMDDVWNE---DPKVWDE----LKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 250 -----~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~----l~~~l~~~~~gs~iiiTtR~ 309 (846)
.....+.+++...+++..+. +.-.+|+|.+... +...... +...+. ..|..+|+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~--~~~~tvil~~~~ 165 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN--RWNFTILLTSQY 165 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH--hCCCEEEEEecc
Confidence 00123566666666665532 3458899987422 2211111 222222 347788888763
No 385
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.29 Score=52.20 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=78.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
-|=-.++|+||.|||+++.++++.. .|+. .=+..+...+..+ ++.++.. ...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDI-YDLELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCce-EEeeeccccCcHH-HHHHHHh----------------------CCC
Confidence 4566789999999999999999842 2331 1223332222222 3333322 223
Q ss_pred eEEEEeeccCCC------Ch------------hhHHHHHHhhCC----CCCCcEEE-EeCCChHHHH--HhCCCCCCCcE
Q 036168 271 IYLLVMDDVWNE------DP------------KVWDELKSLLLG----SAKGSKIL-VTTRSNKVAS--IMGTMRGTAGY 325 (846)
Q Consensus 271 r~LlVlDdv~~~------~~------------~~~~~l~~~l~~----~~~gs~ii-iTtR~~~~~~--~~~~~~~~~~~ 325 (846)
+-+||+.|++-. .. .....|..++.+ ++ +-||| .||...+-.. .+.....+..+
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 456666666321 00 112223333332 22 23555 5776544322 22222334467
Q ss_pred ecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 326 KLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 326 ~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
.++-=+.+.-..|+........ ...++.+|.+...|.-+.=..++..|
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 7777788888888888773322 11445566665555544444444443
No 386
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0011 Score=64.65 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=28.1
Q ss_pred cccCCCcEEEeccccccccc--ccCCCCCCCCEeccccccCcccch-----hhccCCCCcCEEE
Q 036168 645 RYLVNLRMFVVSTKQKSLLE--SGIGCLSSLRFLMISDCENLEYLF-----DDIDQLCVLRTIF 701 (846)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~ 701 (846)
..|++|+.|+|..|.+..+. .-+.++++|++|.|..|.-...-+ ..+.-||+|++|+
T Consensus 60 ~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 60 QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34444444444444444221 123556666666666655433322 2344566777665
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.39 E-value=0.086 Score=54.09 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=27.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV 229 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 229 (846)
...+++.++|++|+||||++.+++... ...-..+.+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeC
Confidence 346899999999999999999988643 222223555544
No 388
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.38 E-value=0.18 Score=51.45 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=53.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN- 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 268 (846)
..+++++|.+|+||||+++.+.... ...-..+.+++..... ....-+....+.+.-......+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999999887642 2211234455543221 11111222222222111112344555544433212
Q ss_pred CceEEEEeeccCCC--ChhhHHHHHHhhCC
Q 036168 269 GEIYLLVMDDVWNE--DPKVWDELKSLLLG 296 (846)
Q Consensus 269 ~kr~LlVlDdv~~~--~~~~~~~l~~~l~~ 296 (846)
.+.=++++|..-.. +....+++...+..
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~ 182 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQ 182 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhh
Confidence 23468899987543 34455566555543
No 389
>PRK06547 hypothetical protein; Provisional
Probab=95.38 E-value=0.02 Score=54.25 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999864
No 390
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.37 E-value=0.13 Score=50.40 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=32.3
Q ss_pred HHHHhcCceEEEEeeccCCC-ChhhHH-HHHHhhCCCC-C-CcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWNE-DPKVWD-ELKSLLLGSA-K-GSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iiiTtR~~~~~~~ 315 (846)
+...+..++-++++|+.-.. +....+ .+...+.... . |..||++|.+......
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 44555677889999987432 333344 4555443322 2 5578999988876543
No 391
>PRK06762 hypothetical protein; Provisional
Probab=95.37 E-value=0.012 Score=55.77 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 392
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.37 E-value=0.042 Score=61.81 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=37.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++|....++++.+.+.... ....-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 458999999988888875433 22357889999999999999999874
No 393
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.37 E-value=0.014 Score=57.59 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999999863
No 394
>PTZ00301 uridine kinase; Provisional
Probab=95.37 E-value=0.021 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 395
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.0027 Score=62.18 Aligned_cols=81 Identities=27% Similarity=0.264 Sum_probs=59.8
Q ss_pred hhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccch--hhhcCCCCcEEecCCcCCCccccc-----cc
Q 036168 572 CISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPN--SICELHSLQTVCLGGCRELEELPK-----DI 644 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~-----~~ 644 (846)
...+++.|++|.|+-|.|+++ ..+..|++|+.|+|+.|. +..+.+ -+.++++|++|-|..|.....-+. .+
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 356889999999999999877 457889999999998775 444443 356788899998888776555443 34
Q ss_pred cccCCCcEEE
Q 036168 645 RYLVNLRMFV 654 (846)
Q Consensus 645 ~~l~~L~~L~ 654 (846)
.-|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 5677777775
No 396
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.33 E-value=0.094 Score=51.79 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=32.1
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHHh
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~~ 316 (846)
+...+..++-++++|+.-. .|....+.+...+... ..|..||++|.+.......
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 3344455667999998633 2344444444444321 2466799999988766543
No 397
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.30 E-value=0.12 Score=50.90 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=35.6
Q ss_pred HHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC-CCCCcEEEEeCCChHHHHHhCCCCCCCcEecCCC
Q 036168 264 RDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG-SAKGSKILVTTRSNKVASIMGTMRGTAGYKLEGL 330 (846)
Q Consensus 264 ~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~~~~~~~~~~~~~~~l~~l 330 (846)
...+..++-++++|+--. .|....+.+...+.. ...|..||++|.+...... .+++.+..+
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~------~~~~~~~~~ 201 (207)
T PRK13539 139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG------ARELDLGPF 201 (207)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc------CcEEeecCc
Confidence 344455677999998633 244444555555442 2236679999988765443 125666553
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.30 E-value=0.024 Score=50.54 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 171 EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
++.+++...|...- ....+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45555656554432 223589999999999999999998753
No 399
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.30 E-value=0.074 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.5
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+..++.|.|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999998873
No 400
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.29 E-value=0.19 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|..|.|||||++.++-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999999875
No 401
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.27 E-value=0.21 Score=49.95 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~ 315 (846)
+...+-.++-++++|+--. .|....+.+...+... ..|..||++|.+.+....
T Consensus 124 laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 124 VARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4455566778999998633 2344444555544321 246678999988775443
No 402
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.25 E-value=0.065 Score=52.56 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=50.0
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhc-------CCCCCCCCHH------
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSIT-------GQNPGDLDTD------ 257 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~-------~~~~~~~~~~------ 257 (846)
.-++|.|.+|+|||+|+..+.+... -+.++++-+.+. .+..++.+++...-. ....++....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4788999999999999999987532 234577777655 345566666644310 0011111111
Q ss_pred ---HHHHHHHHHhcCceEEEEeecc
Q 036168 258 ---QLRRILRDRLNGEIYLLVMDDV 279 (846)
Q Consensus 258 ---~~~~~l~~~l~~kr~LlVlDdv 279 (846)
...+.+++ +++++|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 11222333 789999999998
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.037 Score=57.89 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=49.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILRD 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 265 (846)
-.+|.|-|-+|||||||..+++.+ ..... .+.||+-.+.. .++- --+..++-.. ....+.+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~--~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~- 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESL--QQIK-LRADRLGLPTNNLYLLAETNLEDIIAELE- 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCH--HHHH-HHHHHhCCCccceEEehhcCHHHHHHHHH-
Confidence 358999999999999999999884 33333 57777544443 3222 1223332111 12234554444444
Q ss_pred HhcCceEEEEeeccCC
Q 036168 266 RLNGEIYLLVMDDVWN 281 (846)
Q Consensus 266 ~l~~kr~LlVlDdv~~ 281 (846)
+.++-++|+|.+..
T Consensus 166 --~~~p~lvVIDSIQT 179 (456)
T COG1066 166 --QEKPDLVVIDSIQT 179 (456)
T ss_pred --hcCCCEEEEeccce
Confidence 36778999998843
No 404
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.23 E-value=0.087 Score=56.68 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.5
Q ss_pred eEEEEecCCCCcHHHHHHHHh
Q 036168 192 SVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~ 212 (846)
..++|+|+.|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 489999999999999999986
No 405
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.51 Score=53.53 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=92.0
Q ss_pred CccccchHHHHHHHHHHhcCC-------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN-------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
+++-|.++-+.+|.+-+.-+- .+- .+..=|.++|++|.|||-+|++|+.. |. .-|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssgl-rkRSGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGL-RKRSGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccc-cccceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecCH----
Confidence 567788888888877553211 111 22346789999999999999999873 22 235555444
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-------------hhhHHHHHHhhCCC----CC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-------------PKVWDELKSLLLGS----AK 299 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~~~l~~~l~~~----~~ 299 (846)
+++..--|+ +.+.+.+...+.=..++++|+||.++... .....++..-+..- ..
T Consensus 740 ----ELLNMYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 740 ----ELLNMYVGQ-----SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred ----HHHHHHhcc-----hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 122221122 23334444444445689999999986421 12223344434332 23
Q ss_pred CcEEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHH-HHHHHHhhccCCCCCCcchHHHHHHHHHhhCC
Q 036168 300 GSKILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESC-LSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG 367 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a-~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g 367 (846)
+-=||=.|..++.... +...+-+.-..+++=+.++. ...++.....-..+.+-+ ..+|+++|.-
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 3335556666655432 22222233455655544444 334433321111111222 3567777754
No 406
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.27 Score=50.39 Aligned_cols=132 Identities=8% Similarity=0.026 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh-----------ccCCeeEEEEecCcccHHHHHHH
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ-----------EHFKLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-----------~~f~~~~wv~~~~~~~~~~~~~~ 241 (846)
-+++...+... .-..-..++|+.|+||+++|..++...--. +..+...|+.-...
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--------- 71 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--------- 71 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---------
Confidence 35566666542 335677799999999999998887531100 00111111110000
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHH
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRL-----NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASI 315 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~ 315 (846)
.....+++..+ +.+.+ .++.=++|+|+++....+.+..+...+...++++.+|++|.++ .+...
T Consensus 72 ---------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 72 ---------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ---------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00123343332 22222 3455688999998888888999999998877788777777664 33333
Q ss_pred hCCCCCCCcEecCCC
Q 036168 316 MGTMRGTAGYKLEGL 330 (846)
Q Consensus 316 ~~~~~~~~~~~l~~l 330 (846)
+.+ +...+.+.++
T Consensus 142 I~S--Rcq~~~~~~~ 154 (290)
T PRK05917 142 IRS--RSLSIHIPME 154 (290)
T ss_pred HHh--cceEEEccch
Confidence 222 1235666654
No 407
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.23 Score=55.73 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=96.8
Q ss_pred ccCCccccchHHHHHHHH---HHhcCCC----CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc
Q 036168 161 VLPSEIIGRDEDREKIIE---LLMQTND----GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF 233 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~---~L~~~~~----~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 233 (846)
....+.-|.++..+++.+ .|..+.. |. .-++-+.++|++|.|||.||++++-...+ .| .+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS~ 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGSD 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccchh
Confidence 345678898876665555 4544320 11 44678899999999999999999974322 22 1222210
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC----------ChhhHHHHHHh----hCCCC-
Q 036168 234 EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE----------DPKVWDELKSL----LLGSA- 298 (846)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~----l~~~~- 298 (846)
.++.. .......+.+...+..+.-++.+++|.++.. ..+.+++-... ...+.
T Consensus 219 --------FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 219 --------FVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred --------hhhhh-----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 11111 1112233444444555566799999977431 12344443332 23333
Q ss_pred -CCcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch
Q 036168 299 -KGSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL 370 (846)
Q Consensus 299 -~gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (846)
.|-.|+..|..+++.. .....+.++.+.+..-+...-.+++.-++........-++. .|++.+-|.--
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 3433444454455542 22333334566666666666677777666433322222222 36666666543
No 408
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.20 E-value=0.0092 Score=52.18 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=18.3
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCC
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFK 222 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 222 (846)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 3455553
No 409
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.98 Score=43.98 Aligned_cols=51 Identities=29% Similarity=0.280 Sum_probs=35.5
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLMQTND-------GESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++-|.+-..+++.+...-+-. -+-..++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4566777777777666532210 00134677889999999999999999984
No 410
>PRK13949 shikimate kinase; Provisional
Probab=95.18 E-value=0.14 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 411
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.17 E-value=0.26 Score=51.82 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHh
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 316 (846)
+...+-.++-+++||+--. .|....+.+...+.....+..||+||.+.+.....
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh
Confidence 3445566778999997632 23333344444333322356799999998755443
No 412
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.17 E-value=0.31 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||++.++-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 413
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.013 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcch
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
..+|+|-||-|+||||||+.+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999853
No 414
>PTZ00035 Rad51 protein; Provisional
Probab=95.17 E-value=0.15 Score=54.15 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=37.8
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhh---h-ccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSV---Q-EHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
..-.++.|+|.+|+|||||+..++-.... . ..-..++|++....++++. +.++++..
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHh
Confidence 44579999999999999999888743221 0 1123467988777776665 33444443
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.16 E-value=0.017 Score=57.37 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999773
No 416
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.23 Score=50.41 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=64.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhh-c--cCC--eeEEEEec----CcccHHHHHH--------------HHHHHhcC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQ-E--HFK--LKIWICVS----EDFEQRQIMT--------------KIIKSITG 248 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~--~~~wv~~~----~~~~~~~~~~--------------~i~~~l~~ 248 (846)
.+++|+|..|+|||||++.++...... + .++ .+.++.-. ...+..+.+. ++++.++-
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 589999999999999999998642111 1 111 12222211 0112222221 12222211
Q ss_pred -----CCCCCCCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC--CCCcEEEEeCCChHHHHHh
Q 036168 249 -----QNPGDLDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS--AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 249 -----~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtR~~~~~~~~ 316 (846)
......+..+.+. .|...+..++=+++||+.-. .|...-..+...+... ..|..||++|.+.......
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 1112223333322 24455666778999998632 2333344444444322 2356799999987766543
No 417
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.14 E-value=0.036 Score=54.76 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchh
Q 036168 172 DREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQS 216 (846)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~ 216 (846)
+..++.+.+.... .+..+|+|+|+||+|||||...+....+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 3455666665532 3467999999999999999988887543
No 418
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.12 E-value=0.088 Score=52.75 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred ccccchHHHHHHHHHHhcC-CCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc-cCCeeEEEEecCcccHHHHHHHH
Q 036168 165 EIIGRDEDREKIIELLMQT-NDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE-HFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~-~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
.++|..-..+.++..+.+- ....+.++-+++.+|.+|+||.-+++.++++....+ +-+.+ ...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V---------------~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV---------------HHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH---------------HHh
Confidence 3555544444444444321 112236788999999999999999999887532111 00111 111
Q ss_pred HHHhcCCCCCCCCHHHHHH----HHHHHh-cCceEEEEeeccCCCChhhHHHHHHhhCC
Q 036168 243 IKSITGQNPGDLDTDQLRR----ILRDRL-NGEIYLLVMDDVWNEDPKVWDELKSLLLG 296 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~----~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 296 (846)
.... .-+....++.... .+++.+ .-+|-|+|+|+++.......+.+.+++..
T Consensus 148 vat~--hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 148 VATL--HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred hhhc--cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 1111 0111112222223 333322 35789999999988777888888888763
No 419
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.11 E-value=0.2 Score=46.30 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 420
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.11 E-value=0.22 Score=50.16 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
.+.|+|-.. ..++..++.... ..-+.+.++|+.|+|||+-++.+++.. +..+.+..+..++...++..+
T Consensus 71 ~~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHH
Confidence 345555444 233444444332 223488999999999999999998742 223334556666666666666
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKG 300 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 300 (846)
........ ..........+...+++..-+++.|+.........+.++......+-|
T Consensus 140 ~~~~~~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 140 CAAAFGAT--DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHHhccc--chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 55543332 223445566666777888889999999888888888887766554433
No 421
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.08 E-value=0.26 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|.|..|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.08 E-value=0.21 Score=59.23 Aligned_cols=24 Identities=29% Similarity=0.146 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++++|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 468999999999999999988753
No 423
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.07 E-value=0.013 Score=58.19 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=20.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++.|+|+.|.||||+.+.+..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 57999999999999999988764
No 424
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.06 E-value=0.11 Score=51.02 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=60.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcch--h-hhcc--CC--------------e-eEEEEecCcccHHHHHHHHHHHhcCCCC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQ--S-VQEH--FK--------------L-KIWICVSEDFEQRQIMTKIIKSITGQNP 251 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f~--------------~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 251 (846)
.+++|+|..|.|||||.+.+.... . ..+. |+ . +.++.-....-......+++. ...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----~~~ 102 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR----YVN 102 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----hcc
Confidence 599999999999999999987641 1 0100 00 0 111111100000001111111 111
Q ss_pred CCCCHHHHH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHH
Q 036168 252 GDLDTDQLR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASI 315 (846)
Q Consensus 252 ~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~ 315 (846)
...+..+.+ -.+...+-.++-++++|+.-. .|....+.+...+... ..|..||++|.+......
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 223333332 234445556777999998642 2444444444444322 236679999988876653
No 425
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.06 E-value=0.029 Score=56.16 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHH
Q 036168 174 EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 238 (846)
.+++..+.... .+..+|+|+|.||+|||||...+......+++=-.++-|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 45666665533 45789999999999999999888875433333233444554555543333
No 426
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.092 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+..++|||++|.|||-+|+.|+..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHh
Confidence 4679999999999999999999973
No 427
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.02 E-value=0.053 Score=57.92 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCccccchHHHHHHHHHHhcC--------CCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQT--------NDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...++|.++.++.+..++... .......++.|.++|++|+|||++|+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 466899999999888877541 0000122468899999999999999999874
No 428
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.02 E-value=0.19 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|+|..|.|||||++.++-.
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999853
No 429
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.02 E-value=0.28 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|+|..|.|||||++.++-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999853
No 430
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.02 E-value=0.1 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 431
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.018 Score=52.82 Aligned_cols=20 Identities=45% Similarity=0.743 Sum_probs=18.5
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 036168 193 VIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~ 212 (846)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 432
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.97 E-value=0.26 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|.|..|.|||||++.++-
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999974
No 433
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.97 E-value=1.3 Score=46.43 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=34.7
Q ss_pred cEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHH
Q 036168 324 GYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAV 372 (846)
Q Consensus 324 ~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (846)
.+++++++.+|+..++.-..-..-.......+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6899999999999999987744322221333455677777789999654
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.94 E-value=0.17 Score=50.03 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=57.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEE-------------EEecCcccHHHHHHHHHHHhcCCCCCCCCHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIW-------------ICVSEDFEQRQIMTKIIKSITGQNPGDLDTD 257 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-------------v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 257 (846)
.+++.|.|+.|.||||+.+.+.-.. ...+-...+| .......+...-...... +..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~----------e~~ 99 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV----------ELS 99 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHH----------HHH
Confidence 3688999999999999998887521 1111111112 222211111111111111 112
Q ss_pred HHHHHHHHHhcCceEEEEeeccCCCC----hhh-HHHHHHhhCCCCCCcEEEEeCCChHHHHHh
Q 036168 258 QLRRILRDRLNGEIYLLVMDDVWNED----PKV-WDELKSLLLGSAKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 258 ~~~~~l~~~l~~kr~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 316 (846)
++...+.. ..++-|+++|...... ... ...+...+... .++.+|++|.+.+++...
T Consensus 100 ~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 100 ETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22222221 3568999999973321 111 11233333332 578899999999887655
No 435
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.13 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++++|+.|+||||++..++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999988763
No 436
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.16 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999984
No 437
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.92 E-value=0.052 Score=56.33 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=48.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-NPGDLDTDQLRRILRDRL 267 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l 267 (846)
+.-+++-|+|+.|+||||||..+... .+..-..++|+.....+++..+ ..+--.+..- -......++....+...+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~a-~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEYA-ESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHHH-HHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhHH-HhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 44579999999999999999888874 3333456889988777665332 1111111000 001123344555555555
Q ss_pred c-CceEEEEeecc
Q 036168 268 N-GEIYLLVMDDV 279 (846)
Q Consensus 268 ~-~kr~LlVlDdv 279 (846)
+ +.--++|+|.|
T Consensus 128 rsg~~~lVVvDSv 140 (322)
T PF00154_consen 128 RSGAVDLVVVDSV 140 (322)
T ss_dssp HTTSESEEEEE-C
T ss_pred hcccccEEEEecC
Confidence 4 33458899987
No 438
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.92 E-value=0.26 Score=61.92 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++-|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999975
No 439
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.89 E-value=0.035 Score=53.35 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=31.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHh
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~ 212 (846)
++++|.+..+..+.-.... .+-+.++|++|+|||++|+.+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHH
Confidence 4678888888877766643 3578999999999999999986
No 440
>PRK03839 putative kinase; Provisional
Probab=94.88 E-value=0.019 Score=55.31 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 441
>PRK04040 adenylate kinase; Provisional
Probab=94.88 E-value=0.019 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 442
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.87 E-value=0.25 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.+|.++|.+|+||||+|.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999888864
No 443
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.86 E-value=0.062 Score=57.68 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=45.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILRD 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 265 (846)
-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++... +..++-.. ....+.+.+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIKLR-ADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHHHH-HHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 4699999999999999999998642 222245777765433 3333221 23332111 01223344444432
Q ss_pred HhcCceEEEEeecc
Q 036168 266 RLNGEIYLLVMDDV 279 (846)
Q Consensus 266 ~l~~kr~LlVlDdv 279 (846)
..+.-++|+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 234567888887
No 444
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.85 E-value=0.17 Score=49.74 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~ 315 (846)
+...+..++-+++||+.-. .|....+.+...+... ..|..||++|.+......
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3344556677999998633 2444444454444322 246679999988776544
No 445
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.82 E-value=0.06 Score=58.45 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=46.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC------CCCCCCHH-----HHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ------NPGDLDTD-----QLR 260 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~~ 260 (846)
..++|+|..|+|||||++.+..... ....+++..-....+..++....+...... ..+..... ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999999999999998876322 122344443323445554444443332111 11111111 111
Q ss_pred HHHHHHh--cCceEEEEeecc
Q 036168 261 RILRDRL--NGEIYLLVMDDV 279 (846)
Q Consensus 261 ~~l~~~l--~~kr~LlVlDdv 279 (846)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 1233333 588999999998
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.027 Score=50.91 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=30.1
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT 247 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 247 (846)
+|.|.|++|.||||+|+.+++..... + + +.-.++++|+++.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~--v----saG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L--V----SAGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e--e----eccHHHHHHHHHcC
Confidence 68999999999999999998843222 1 1 22356777777663
No 447
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.79 E-value=0.42 Score=47.11 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
+...+-.++=++++|+... .|....+.+...+.....|..||++|.+......
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 3344455667889998643 2444444455544433346778888888776543
No 448
>PRK04328 hypothetical protein; Provisional
Probab=94.79 E-value=0.13 Score=52.15 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=30.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED 232 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 232 (846)
.-.++.|.|.+|.|||+||.++.... . ..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45799999999999999999877632 2 22345788876553
No 449
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.78 E-value=0.065 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=18.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999874
No 450
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.76 E-value=0.023 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 451
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.75 E-value=0.1 Score=59.01 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=72.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|+...+.++...+.... .....|.|+|.+|+|||++|+.++...... . ...+.+++..- +...+...+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-~-~~~i~i~c~~~-~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHSPRA-K-APFIALNMAAI-PKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-C-CCeEeeeCCCC-CHHHHHHHhc
Confidence 358898888888777765432 223468899999999999999998742111 1 11233333322 2222222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCCh
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRSN 310 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~~ 310 (846)
..-.+...+.... ....+. ....--|+||++..........+...+.... ...+||+||...
T Consensus 211 g~~~g~~~~~~~~--~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 211 GHEKGAFTGANTI--RQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred CCCCCCCCCCCcC--CCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 1111100000000 000000 1122357889998877777777877765431 123888888643
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.75 E-value=0.21 Score=55.19 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=27.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV 229 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 229 (846)
.++++++|+.|+||||++.+++.....+.....+..++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 479999999999999999999874332322223444543
No 453
>PRK00625 shikimate kinase; Provisional
Probab=94.75 E-value=0.02 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.|.|+||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999773
No 454
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.73 E-value=0.17 Score=50.60 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC-CCCcEEEEeCCChHHHHHh
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS-AKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~~~~~~ 316 (846)
+...+-..+-++++|+.-. .|....+.+...+... ..|..||++|.+.......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 3344456677999998633 2444444555544322 2366799999998766443
No 455
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.16 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|..|.|||||++.++-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999985
No 456
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.72 E-value=0.088 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEecCCCCcHHHHHHHHhcch
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998743
No 457
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.71 E-value=0.11 Score=55.59 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=59.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..+.|.|+.|.||||+++.+... ........++. +..+.... .......+..... ..+.....+.++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNKRSLINQREV-GLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCccceEEcccc-CCCCcCHHHHHHHhhccCC
Confidence 58999999999999999988763 33233344443 22221111 0000000000111 1112234566777788888
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHH
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVA 313 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~ 313 (846)
=.|++|.+ .+.+.+...... ...|..|+.|....+..
T Consensus 197 d~i~vgEi--rd~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEM--RDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCC--CCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 89999999 444444433332 23455566666654443
No 458
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.71 E-value=1.6 Score=49.17 Aligned_cols=125 Identities=22% Similarity=0.209 Sum_probs=68.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhh-hccC-----CeeEEEEecCcc-----cH------------HHHHHHHHHHhcC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSV-QEHF-----KLKIWICVSEDF-----EQ------------RQIMTKIIKSITG 248 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~-~~~f-----~~~~wv~~~~~~-----~~------------~~~~~~i~~~l~~ 248 (846)
..|+|+|+.|+|||||.+.+...... .+.. -.+.|+.-.... ++ ..-.+..+..++=
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 47899999999999999999542111 1111 112233211100 11 2233333333321
Q ss_pred ------CCCCCCCHHHHH-HHHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCC
Q 036168 249 ------QNPGDLDTDQLR-RILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGT 318 (846)
Q Consensus 249 ------~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~ 318 (846)
......+-.+.. -.+...+-.++=+||||.--+ -|.+..+.|...+.... | .||+.|.++.......+
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-G-tvl~VSHDr~Fl~~va~ 504 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVSHDRYFLDRVAT 504 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhcc
Confidence 111122333333 234445566778999997532 35566677777776553 5 49999999988877653
No 459
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.71 E-value=0.24 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
-..++|+|+.|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999974
No 460
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.69 E-value=0.16 Score=49.41 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccC--------CeeEEEEecCc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHF--------KLKIWICVSED 232 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 232 (846)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488899999999999998888754332222 24778876655
No 461
>PRK13948 shikimate kinase; Provisional
Probab=94.68 E-value=0.21 Score=47.69 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+.|.++|+.|+||||+++.+.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 462
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.68 E-value=0.41 Score=50.80 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=54.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
.++|.++|+.|+||||-..+++........=..+..++...-. ...+-++.-++-++-.-....+..++...+.. +++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-LRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-hhc
Confidence 6899999999999987555554432211222335566543221 22222333333333222223355555555543 333
Q ss_pred ceEEEEeeccCCC--ChhhHHHHHHhhCCC
Q 036168 270 EIYLLVMDDVWNE--DPKVWDELKSLLLGS 297 (846)
Q Consensus 270 kr~LlVlDdv~~~--~~~~~~~l~~~l~~~ 297 (846)
. =+|.+|-+-.. +....+++..++...
T Consensus 282 ~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 282 C-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred C-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 3 35666766432 445666777776654
No 463
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.67 E-value=0.33 Score=47.25 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEecCCCCcHHHHHHHHh
Q 036168 193 VIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~ 212 (846)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 464
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.24 Score=57.55 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=47.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
.++++++|+.|+||||.+.+++...........+..++.... ....+-+....+.++.......+..++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 479999999999999999999874322222223444443221 112233333333333222223355555555543 344
Q ss_pred ceEEEEeeccC
Q 036168 270 EIYLLVMDDVW 280 (846)
Q Consensus 270 kr~LlVlDdv~ 280 (846)
+ =++++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 4 377778654
No 465
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=1.3 Score=45.57 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh-HHHHHhCCCCCCCcEecCCCChHHHHHHHH
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN-KVASIMGTMRGTAGYKLEGLPYESCLSLFM 340 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~ 340 (846)
+++=++|+|+++.........|...+...++++.+|++|.+. .+...+.+ +...+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S--Rcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS--RTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH--cceeeeCCC-cHHHHHHHHH
Confidence 456689999998888888889999998877777777777654 34444333 234677766 6666666664
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.65 E-value=0.091 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 467
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.61 E-value=0.057 Score=51.71 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 468
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.58 E-value=0.049 Score=62.44 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-+.++|.++.++.|...+.. .+.+.++|.+|+||||+|+.+.+.. ...+++..+|..- ...+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHH
Confidence 45689999999988887754 2468899999999999999998742 2334566778655 444677777777
Q ss_pred HHHhc
Q 036168 243 IKSIT 247 (846)
Q Consensus 243 ~~~l~ 247 (846)
..+++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 76553
No 469
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.57 E-value=0.26 Score=49.24 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=29.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED 232 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 232 (846)
.-.++.|.|.+|+|||++|.+++... .+. =..++|++....
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-LKN-GEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhC-CCeEEEEECCCC
Confidence 35799999999999999998887632 122 235677776553
No 470
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.55 E-value=0.025 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 471
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.34 Score=48.62 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=32.4
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
|...+-.++-+++||+-.. .|....+.+...+.....|..||++|.+......
T Consensus 150 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 150 IARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3445566778999998643 2444444444444332236678999988876543
No 472
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.53 E-value=0.3 Score=55.05 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=71.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHH
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIK 244 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 244 (846)
.++|......++...+.... .....+.|.|..|+||+++|+.+...... .....+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~~--~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSPR--ANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCCC--CCCCeEEEeCCCC--CHHHHHHHh-
Confidence 47887777777776665432 22346789999999999999999863211 1112223333222 223333222
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCCh
Q 036168 245 SITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRSN 310 (846)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~~ 310 (846)
.+......... ........-....-.|+||++..........+...+..+. .+.+||+||...
T Consensus 206 --fg~~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 12111110000 0000000112223458999998888777777877775431 245788888643
No 473
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.52 E-value=0.16 Score=58.32 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=58.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhcc-CCeeEEEEecCcccHHHHHHHHHHHhcCCCCC-------CCCHHHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEH-FKLKIWICVSEDFEQRQIMTKIIKSITGQNPG-------DLDTDQLRRIL 263 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l 263 (846)
++..|.|.+|.||||++..+......... =...+.+......-...+...+-..+...... ......+.+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 58899999999999999888764211111 12345555544444444444443322111000 00111121211
Q ss_pred HHHhc--------Cce---EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC
Q 036168 264 RDRLN--------GEI---YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 264 ~~~l~--------~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR 308 (846)
..... +.+ =++|+|.+...+......+...++ +++|+|+--=
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 11111 111 289999986666655555655554 4678886553
No 474
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.52 E-value=0.11 Score=52.42 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=52.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhh--hccCCeeEEEEecCcc-cHHHHHHHHHHHhcC-C------CCCCCCHHH---
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSV--QEHFKLKIWICVSEDF-EQRQIMTKIIKSITG-Q------NPGDLDTDQ--- 258 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~------~~~~~~~~~--- 258 (846)
+-++|.|-.|+|||+|+..+.++... +++-+.++++-+.+.. +..+++.++...-.- . ..++....+
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46799999999999999988875321 1224677888877664 445555555443110 0 011111111
Q ss_pred --HHHHHHHHh--c-CceEEEEeecc
Q 036168 259 --LRRILRDRL--N-GEIYLLVMDDV 279 (846)
Q Consensus 259 --~~~~l~~~l--~-~kr~LlVlDdv 279 (846)
..-.+.+++ + ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 112234444 3 78999999998
No 475
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.52 E-value=0.42 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||++.+..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.51 E-value=0.16 Score=53.28 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 477
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.049 Score=52.60 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
.|+|+|-||+||||+|..+......++.|+ +.-|+...+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999988555322233243 44455544444
No 478
>PF13479 AAA_24: AAA domain
Probab=94.49 E-value=0.13 Score=50.98 Aligned_cols=20 Identities=45% Similarity=0.449 Sum_probs=17.6
Q ss_pred eEEEEecCCCCcHHHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLV 211 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v 211 (846)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46789999999999999666
No 479
>PRK15453 phosphoribulokinase; Provisional
Probab=94.49 E-value=0.16 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999998885
No 480
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.48 E-value=0.063 Score=46.92 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=33.1
Q ss_pred ccccchHHH----HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 165 EIIGRDEDR----EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 165 ~~vGr~~~~----~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|..-.. +.|...+... .+.++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 355555444 4444555432 2367889999999999999999888875
No 481
>PF13245 AAA_19: Part of AAA domain
Probab=94.45 E-value=0.072 Score=42.49 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.0
Q ss_pred eEEEEecCCCCcHHHHHHHHh
Q 036168 192 SVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~ 212 (846)
+++.|.|++|.|||+++....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578889999999995554443
No 482
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.43 E-value=0.077 Score=61.07 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...|...+++. ....+...+++.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEe-CCCCCchHHHHHH
Confidence 467899999888888877542 3566999999999999999987421 22333333332 2333555667777
Q ss_pred HHHhc
Q 036168 243 IKSIT 247 (846)
Q Consensus 243 ~~~l~ 247 (846)
...++
T Consensus 87 ~~~~g 91 (608)
T TIGR00764 87 PAGEG 91 (608)
T ss_pred HHhhc
Confidence 66654
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.43 E-value=0.096 Score=52.52 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=28.7
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED 232 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 232 (846)
+...++.|.|.+|+|||++|.++......+ .=..++|++...+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC
Confidence 345699999999999999998877532222 1235778776444
No 484
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.40 E-value=0.18 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEecCCCCcHHHHHHHHh
Q 036168 192 SVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~ 212 (846)
++++|+|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 485
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.40 E-value=0.28 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|.|+.|.|||||.+.++.-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 486
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.37 E-value=0.33 Score=56.61 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.0
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999864
No 487
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.36 E-value=0.25 Score=50.14 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=36.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|.|.+|+|||++|.+++.+...... ..++|++... +..++...++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHHHh
Confidence 468999999999999999988764332212 3466766544 4556666665543
No 488
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.35 E-value=0.079 Score=47.58 Aligned_cols=104 Identities=15% Similarity=0.302 Sum_probs=55.0
Q ss_pred hhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccc-hhhh
Q 036168 544 SLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLP-NSIC 621 (846)
Q Consensus 544 ~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp-~~~~ 621 (846)
..+.++.+|+.+.+.. . ...+...+|..++.|+.+.+.++ +..++ ..|.+++.|+.+.+.. ....++ ..|.
T Consensus 6 ~~F~~~~~l~~i~~~~-~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-T---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp TTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred HHHhCCCCCCEEEECC-C---eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 3466777888888762 1 23445567888888999999875 55554 3477787899999964 234343 4456
Q ss_pred cCCCCcEEecCCcCCCcccc-ccccccCCCcEEEecc
Q 036168 622 ELHSLQTVCLGGCRELEELP-KDIRYLVNLRMFVVST 657 (846)
Q Consensus 622 ~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 657 (846)
.+++|+.+.+..+ +..++ ..+.++ +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6888888888643 33333 334554 666666544
No 489
>PHA02624 large T antigen; Provisional
Probab=94.35 E-value=0.25 Score=55.25 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 171 EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+..++.+.+.... ++-+++.++|++|.||||+|..+.+
T Consensus 415 ~~~~~~lk~~l~gi----PKk~~il~~GPpnTGKTtf~~sLl~ 453 (647)
T PHA02624 415 DVIYDILKLIVENV----PKRRYWLFKGPVNSGKTTLAAALLD 453 (647)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444444444332 5567999999999999999999987
No 490
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.34 E-value=0.026 Score=54.05 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 491
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.32 E-value=0.025 Score=54.56 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 492
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.32 E-value=0.47 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|.|+.|.|||||.+.+..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 493
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.47 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|+|..|.|||||++.+.-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 59999999999999999998764
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.27 E-value=0.028 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999773
No 495
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.27 E-value=0.61 Score=51.93 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=63.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEE-------Ee----cCcccHHHH------------------HHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWI-------CV----SEDFEQRQI------------------MTKI 242 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~----~~~~~~~~~------------------~~~i 242 (846)
.+++|+|..|.|||||++.++-.... ..+.+++ .. ....+..+- ..++
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 58999999999999999999863211 1111111 00 111111111 1122
Q ss_pred HHHhc-----CCCCCCCCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC-CCCCcEEEEeCCChHHHH
Q 036168 243 IKSIT-----GQNPGDLDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG-SAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 243 ~~~l~-----~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~~~ 314 (846)
++.++ .......+..+.++ .+...+...+-+++||+.-. .|....+.+...+.. ...|..||++|.+.....
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 22221 11222334444333 24445556778999998643 244444444444432 124667999999877655
Q ss_pred Hh
Q 036168 315 IM 316 (846)
Q Consensus 315 ~~ 316 (846)
..
T Consensus 208 ~l 209 (549)
T PRK13545 208 SF 209 (549)
T ss_pred Hh
Confidence 43
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.26 E-value=0.027 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 497
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.37 Score=56.74 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC
Q 036168 170 DEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ 249 (846)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 249 (846)
....++|.+.+.. ..++.|.|..|.||||-.-+++.+.-. .....+-++-........+...++++++..
T Consensus 52 ~~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 4567888888843 469999999999999999777653221 122233333333334556777888887543
Q ss_pred CCC-------------------CCCHHHHHHHHH-HHhcCceEEEEeeccCCCChhhHHHH----HHhhCCCCCCcEEEE
Q 036168 250 NPG-------------------DLDTDQLRRILR-DRLNGEIYLLVMDDVWNEDPKVWDEL----KSLLLGSAKGSKILV 305 (846)
Q Consensus 250 ~~~-------------------~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l----~~~l~~~~~gs~iii 305 (846)
..+ -.+...+.+.+. +.+-.+=-.+|+|.+++.... -+-+ +..+....+.-||||
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~-tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN-TDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH-HHHHHHHHHHHHhhcCCCceEEE
Confidence 110 012333444433 222223348999999875421 1222 222333334589999
Q ss_pred eCCChH
Q 036168 306 TTRSNK 311 (846)
Q Consensus 306 TtR~~~ 311 (846)
+|=.-+
T Consensus 201 mSATld 206 (845)
T COG1643 201 MSATLD 206 (845)
T ss_pred EecccC
Confidence 887644
No 498
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.4 Score=48.38 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 263 LRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 263 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
+...+-.++-+++||+... .|....+.+...+.....|..||++|.+......
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 4455566778999998643 2444445555555432226678998888876654
No 499
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.23 E-value=0.032 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999763
No 500
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.22 E-value=0.12 Score=55.33 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=57.7
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh----ccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ----EHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILR 264 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 264 (846)
..++=+-|||..|.|||.|.-.+|+....+ -||. ....++-+.+.........+.. +.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~~----va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLPQ----VA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHHH----HH
Confidence 457789999999999999999999854331 2221 2222332222211112222333 33
Q ss_pred HHhcCceEEEEeeccCCCChhhHHHHHHhhCC-CCCCcEEEEeCCChHHHH
Q 036168 265 DRLNGEIYLLVMDDVWNEDPKVWDELKSLLLG-SAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 265 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~~~~ 314 (846)
+.+.++..||.||.+.-.+...---+...|.. ...|. |+|+|.|.....
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~~ 171 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPED 171 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChHH
Confidence 44455667999998755443332222333322 23454 666666654444
Done!