Query 036168
Match_columns 846
No_of_seqs 706 out of 4435
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-46 8.9E-51 426.4 22.7 315 167-513 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-37 5.3E-42 355.3 22.4 286 164-505 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-36 7.6E-41 383.4 28.7 316 158-512 118-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.6E-38 326.5 27.4 308 161-510 121-450 (591)
5 4fcg_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 223.2 15.2 222 576-814 80-311 (328)
6 3rgz_A Protein brassinosteroid 99.9 1.6E-23 5.6E-28 249.6 16.3 260 576-846 393-714 (768)
7 3rgz_A Protein brassinosteroid 99.9 3.9E-23 1.3E-27 246.4 17.3 297 525-839 394-766 (768)
8 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-23 7.4E-28 220.5 12.9 233 571-819 70-306 (313)
9 3v47_A TOLL-like receptor 5B a 99.9 1.1E-22 3.8E-27 228.2 19.2 299 523-846 28-405 (455)
10 2id5_A Lingo-1, leucine rich r 99.9 1.6E-22 5.6E-27 228.0 19.8 276 522-814 29-306 (477)
11 4fcg_A Uncharacterized protein 99.9 9.2E-23 3.1E-27 217.0 16.5 221 599-844 80-309 (328)
12 4eco_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 235.0 18.7 306 525-846 249-576 (636)
13 4eco_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 240.3 12.3 262 569-846 198-523 (636)
14 4ecn_A Leucine-rich repeat pro 99.9 7.1E-22 2.4E-26 233.5 21.9 304 526-846 449-816 (876)
15 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-22 6.5E-27 213.3 15.1 246 577-846 50-301 (313)
16 2id5_A Lingo-1, leucine rich r 99.9 1.3E-21 4.3E-26 220.7 22.2 249 550-815 32-283 (477)
17 4ecn_A Leucine-rich repeat pro 99.9 4.9E-22 1.7E-26 234.9 18.1 261 569-846 440-763 (876)
18 4fmz_A Internalin; leucine ric 99.9 6E-21 2.1E-25 205.6 22.3 278 525-846 66-343 (347)
19 1xku_A Decorin; proteoglycan, 99.9 9.5E-21 3.2E-25 202.4 20.6 268 550-846 52-329 (330)
20 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-21 2.4E-25 217.3 19.6 108 523-636 19-127 (520)
21 3t6q_A CD180 antigen; protein- 99.8 8E-21 2.7E-25 221.2 18.6 274 526-815 255-534 (606)
22 3v47_A TOLL-like receptor 5B a 99.8 6.4E-21 2.2E-25 213.8 17.1 277 525-817 54-408 (455)
23 3vq2_A TLR4, TOLL-like recepto 99.8 8.6E-21 2.9E-25 221.0 18.6 134 523-660 30-165 (606)
24 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-20 5.1E-25 201.0 17.1 267 550-846 54-330 (332)
25 3t6q_A CD180 antigen; protein- 99.8 1.8E-20 6E-25 218.3 19.2 249 551-815 255-511 (606)
26 4fmz_A Internalin; leucine ric 99.8 6.7E-20 2.3E-24 197.4 21.5 278 525-846 44-321 (347)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.2E-20 1.4E-24 212.6 20.7 108 523-636 50-158 (562)
28 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-20 9.8E-25 224.0 19.7 163 523-688 22-191 (844)
29 3vq2_A TLR4, TOLL-like recepto 99.8 4E-20 1.4E-24 215.3 19.3 267 526-817 286-558 (606)
30 1ziw_A TOLL-like receptor 3; i 99.8 3.8E-20 1.3E-24 218.5 19.3 159 522-684 22-184 (680)
31 3oja_B Anopheles plasmodium-re 99.8 2.5E-20 8.4E-25 215.7 17.2 266 525-815 51-356 (597)
32 3o6n_A APL1; leucine-rich repe 99.8 3.7E-20 1.3E-24 202.8 17.7 148 525-680 45-195 (390)
33 3o6n_A APL1; leucine-rich repe 99.8 8.6E-20 2.9E-24 199.9 20.0 261 526-815 70-350 (390)
34 3bz5_A Internalin-J, INLJ; leu 99.8 9.4E-20 3.2E-24 202.6 19.9 253 525-818 64-321 (457)
35 2z63_A TOLL-like receptor 4, v 99.8 5.8E-20 2E-24 212.4 18.4 64 572-635 95-160 (570)
36 3oja_B Anopheles plasmodium-re 99.8 6.6E-20 2.3E-24 212.1 18.8 264 548-846 49-355 (597)
37 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 192.0 18.4 225 577-816 28-260 (306)
38 3j0a_A TOLL-like receptor 5; m 99.8 6.8E-20 2.3E-24 220.7 19.0 180 548-730 22-215 (844)
39 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-19 3.6E-24 209.1 17.6 156 523-682 24-183 (549)
40 2z7x_B TOLL-like receptor 1, v 99.8 8.9E-20 3.1E-24 208.1 16.7 126 550-683 21-150 (520)
41 3zyi_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 198.7 21.3 226 577-817 75-303 (452)
42 3zyj_A Leucine-rich repeat-con 99.8 2.9E-19 9.8E-24 198.8 20.1 224 577-816 64-291 (440)
43 3zyi_A Leucine-rich repeat-con 99.8 2.7E-19 9.2E-24 199.8 19.7 226 550-793 75-303 (452)
44 3bz5_A Internalin-J, INLJ; leu 99.8 5E-19 1.7E-23 196.8 21.7 253 525-820 42-302 (457)
45 3zyj_A Leucine-rich repeat-con 99.8 5.9E-19 2E-23 196.3 21.3 242 579-846 45-289 (440)
46 2z80_A TOLL-like receptor 2, v 99.8 6.1E-20 2.1E-24 198.0 12.9 255 550-817 52-314 (353)
47 1xku_A Decorin; proteoglycan, 99.8 6E-19 2E-23 188.4 19.7 239 550-815 31-274 (330)
48 1o6v_A Internalin A; bacterial 99.8 1.5E-18 5.1E-23 194.6 22.4 187 526-729 69-275 (466)
49 2z66_A Variable lymphocyte rec 99.8 5.4E-19 1.8E-23 186.6 16.7 243 580-846 10-258 (306)
50 1o6v_A Internalin A; bacterial 99.8 2E-18 6.9E-23 193.6 22.2 187 526-730 47-254 (466)
51 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.6E-23 206.2 20.6 259 550-814 25-306 (680)
52 2z81_A CD282 antigen, TOLL-lik 99.8 3.4E-19 1.1E-23 204.9 16.0 131 525-659 50-183 (549)
53 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 4.1E-23 181.5 18.1 202 573-816 6-207 (290)
54 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-18 4.2E-23 186.1 18.6 238 550-815 33-275 (332)
55 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.9E-23 181.2 18.4 203 576-816 31-237 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.8 8.3E-19 2.8E-23 185.8 16.7 245 546-819 30-277 (317)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-18 5.4E-23 199.4 20.3 144 528-683 34-181 (562)
58 3oja_A Leucine-rich immune mol 99.8 1.2E-18 4E-23 195.6 16.4 213 578-816 35-249 (487)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.8E-23 181.3 15.5 179 549-730 31-212 (285)
60 2z62_A TOLL-like receptor 4, v 99.8 1.9E-18 6.5E-23 179.3 15.7 153 577-729 28-187 (276)
61 2z63_A TOLL-like receptor 4, v 99.8 1.3E-18 4.5E-23 201.0 15.9 270 527-817 259-531 (570)
62 1wwl_A Monocyte differentiatio 99.8 3.2E-19 1.1E-23 188.6 9.1 219 579-815 65-307 (312)
63 4g8a_A TOLL-like receptor 4; l 99.8 5.7E-18 2E-22 198.5 20.2 134 522-660 49-185 (635)
64 1wwl_A Monocyte differentiatio 99.8 1.8E-19 6.1E-24 190.5 5.6 248 573-846 39-306 (312)
65 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.7E-23 186.7 13.1 249 577-846 52-311 (353)
66 2o6q_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 172.4 18.7 196 578-815 17-216 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.8 6.5E-19 2.2E-23 186.7 9.2 226 566-817 23-250 (317)
68 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.6E-22 172.2 16.9 188 573-805 59-247 (272)
69 1h6u_A Internalin H; cell adhe 99.7 1E-17 3.4E-22 176.4 15.7 194 576-797 40-233 (308)
70 2xwt_C Thyrotropin receptor; s 99.7 1.7E-17 5.9E-22 168.0 14.3 199 578-817 32-239 (239)
71 4glp_A Monocyte differentiatio 99.7 2.8E-17 9.5E-22 173.5 15.8 198 575-815 89-305 (310)
72 1z7x_W Ribonuclease inhibitor; 99.7 5.6E-19 1.9E-23 198.3 2.7 206 524-729 2-237 (461)
73 2ca6_A RAN GTPase-activating p 99.7 8.7E-19 3E-23 191.5 3.1 189 542-730 24-255 (386)
74 3g06_A SSPH2 (leucine-rich rep 99.7 1.9E-16 6.4E-21 181.2 22.0 237 523-815 59-295 (622)
75 4g8a_A TOLL-like receptor 4; l 99.7 6.9E-17 2.3E-21 189.3 18.7 129 550-682 52-184 (635)
76 2z62_A TOLL-like receptor 4, v 99.7 5.1E-17 1.7E-21 168.5 14.8 204 550-794 28-238 (276)
77 3oja_A Leucine-rich immune mol 99.7 2.3E-17 7.8E-22 185.1 12.1 216 598-846 32-247 (487)
78 1jl5_A Outer protein YOPM; leu 99.7 3.9E-16 1.3E-20 173.3 21.4 213 573-816 149-369 (454)
79 2ast_B S-phase kinase-associat 99.7 1E-17 3.5E-22 179.5 8.3 177 550-730 70-258 (336)
80 3rfs_A Internalin B, repeat mo 99.7 8.6E-17 2.9E-21 166.2 14.9 195 574-815 38-233 (272)
81 2qen_A Walker-type ATPase; unk 99.7 1.2E-15 4.2E-20 164.2 23.9 296 161-506 9-349 (350)
82 3qfl_A MLA10; coiled-coil, (CC 99.7 5.4E-18 1.9E-22 146.6 4.2 79 8-86 3-83 (115)
83 3g06_A SSPH2 (leucine-rich rep 99.7 7.7E-16 2.6E-20 176.1 21.8 253 527-846 42-294 (622)
84 1z7x_W Ribonuclease inhibitor; 99.7 3.3E-18 1.1E-22 192.0 1.9 282 526-815 86-409 (461)
85 1w5s_A Origin recognition comp 99.7 4.5E-16 1.5E-20 171.7 18.3 304 162-482 20-372 (412)
86 1p9a_G Platelet glycoprotein I 99.7 4.2E-16 1.4E-20 162.3 16.4 150 577-730 31-183 (290)
87 1h6u_A Internalin H; cell adhe 99.7 4.4E-16 1.5E-20 163.8 16.7 169 547-730 38-206 (308)
88 2ast_B S-phase kinase-associat 99.7 3.5E-17 1.2E-21 175.2 8.4 236 577-830 70-318 (336)
89 2o6q_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 160.0 15.3 175 551-729 38-215 (270)
90 2fna_A Conserved hypothetical 99.6 1.1E-14 3.6E-19 157.4 23.8 295 161-505 10-356 (357)
91 4glp_A Monocyte differentiatio 99.6 4.8E-16 1.6E-20 164.0 12.6 221 577-846 64-304 (310)
92 2ca6_A RAN GTPase-activating p 99.6 1.3E-16 4.6E-21 174.1 8.5 257 526-814 33-340 (386)
93 3ogk_B Coronatine-insensitive 99.6 6.2E-17 2.1E-21 187.9 5.2 136 543-679 185-326 (592)
94 1jl5_A Outer protein YOPM; leu 99.6 2.6E-15 8.9E-20 166.6 18.0 247 524-816 130-408 (454)
95 3m19_A Variable lymphocyte rec 99.6 2.5E-15 8.7E-20 153.1 16.2 149 578-729 15-165 (251)
96 3goz_A Leucine-rich repeat-con 99.6 1.7E-16 5.8E-21 171.4 7.0 39 777-815 250-295 (362)
97 4ay9_X Follicle-stimulating ho 99.6 5.2E-15 1.8E-19 158.8 17.6 221 577-814 30-256 (350)
98 3m19_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 150.0 17.5 175 600-816 14-191 (251)
99 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.1E-20 149.2 10.3 151 574-730 41-192 (197)
100 1h6t_A Internalin B; cell adhe 99.6 3.4E-15 1.2E-19 155.6 14.3 145 575-729 44-188 (291)
101 3cvr_A Invasion plasmid antige 99.6 3E-15 1E-19 169.0 14.5 192 577-802 59-252 (571)
102 3goz_A Leucine-rich repeat-con 99.6 3.8E-16 1.3E-20 168.6 6.3 244 568-846 13-294 (362)
103 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 146.3 13.7 179 580-805 10-190 (208)
104 3ogk_B Coronatine-insensitive 99.6 2.1E-16 7.2E-21 183.3 3.9 202 526-728 139-351 (592)
105 1m9s_A Internalin B; cell inva 99.6 6.2E-15 2.1E-19 168.5 15.4 145 575-729 41-185 (605)
106 2xwt_C Thyrotropin receptor; s 99.6 4.1E-15 1.4E-19 150.5 11.3 174 551-730 32-216 (239)
107 4ay9_X Follicle-stimulating ho 99.6 6.7E-15 2.3E-19 158.0 13.2 220 550-790 30-256 (350)
108 1m9s_A Internalin B; cell inva 99.6 5.5E-15 1.9E-19 168.9 13.0 189 579-794 23-211 (605)
109 1h6t_A Internalin B; cell adhe 99.6 2.2E-14 7.4E-19 149.4 14.5 170 546-730 42-211 (291)
110 4ezg_A Putative uncharacterize 99.6 1.9E-14 6.5E-19 140.6 12.8 128 597-729 41-169 (197)
111 1dce_A Protein (RAB geranylger 99.6 2.5E-16 8.5E-21 179.0 -1.2 151 574-729 346-518 (567)
112 2v9t_B SLIT homolog 2 protein 99.5 3.5E-14 1.2E-18 141.1 13.3 149 580-730 14-163 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 8.9E-14 3.1E-18 138.2 13.1 149 580-730 14-164 (220)
114 3cvr_A Invasion plasmid antige 99.5 2.9E-14 9.9E-19 161.0 10.5 111 577-705 80-190 (571)
115 2qby_B CDC6 homolog 3, cell di 99.5 2.3E-12 8E-17 140.3 25.2 297 162-482 18-340 (384)
116 1xeu_A Internalin C; cellular 99.5 2.7E-14 9.1E-19 146.3 9.0 141 578-729 20-160 (263)
117 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 138.2 13.5 147 579-730 21-170 (229)
118 2p1m_B Transport inhibitor res 99.5 3.2E-15 1.1E-19 173.5 1.1 38 779-816 480-518 (594)
119 2p1m_B Transport inhibitor res 99.5 2.8E-15 9.6E-20 174.0 0.5 130 526-656 106-243 (594)
120 1fnn_A CDC6P, cell division co 99.5 4.5E-12 1.5E-16 138.4 25.5 303 162-483 15-353 (389)
121 2v1u_A Cell division control p 99.5 3.2E-12 1.1E-16 139.4 24.2 300 162-482 17-352 (387)
122 1xeu_A Internalin C; cellular 99.5 2.1E-13 7.3E-18 139.5 12.6 147 573-730 37-183 (263)
123 4b8c_D Glucose-repressible alc 99.5 2.2E-14 7.4E-19 168.4 5.3 110 617-729 217-326 (727)
124 2o6s_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 134.2 11.8 146 576-729 27-175 (208)
125 2xot_A Amphoterin-induced prot 99.4 2.9E-13 9.9E-18 145.8 12.4 148 580-730 21-174 (361)
126 1dce_A Protein (RAB geranylger 99.4 2.6E-15 8.9E-20 170.6 -5.6 176 597-815 346-544 (567)
127 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 128.6 9.0 129 575-706 22-158 (168)
128 3e6j_A Variable lymphocyte rec 99.4 7.8E-13 2.7E-17 132.3 11.4 131 577-708 40-172 (229)
129 2v9t_B SLIT homolog 2 protein 99.4 9.3E-13 3.2E-17 130.8 11.5 130 577-707 32-164 (220)
130 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.1E-17 130.0 11.9 131 577-707 32-165 (220)
131 2qby_A CDC6 homolog 1, cell di 99.4 2.2E-11 7.6E-16 132.7 22.5 301 161-482 17-349 (386)
132 1njg_A DNA polymerase III subu 99.4 7.8E-12 2.7E-16 126.9 17.2 199 164-379 23-231 (250)
133 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.7E-17 141.3 10.8 152 577-730 39-200 (361)
134 2je0_A Acidic leucine-rich nuc 99.4 4E-13 1.4E-17 124.6 6.4 126 576-703 16-148 (149)
135 4b8c_D Glucose-repressible alc 99.3 8.5E-13 2.9E-17 154.9 8.7 122 568-691 215-336 (727)
136 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.3E-17 121.7 8.1 131 597-731 21-159 (168)
137 1w8a_A SLIT protein; signaling 99.3 6.7E-12 2.3E-16 121.7 10.9 124 580-706 11-137 (192)
138 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 8E-17 119.4 6.2 128 598-728 15-149 (149)
139 2chg_A Replication factor C sm 99.3 6.4E-11 2.2E-15 118.1 17.1 187 163-376 16-204 (226)
140 2wfh_A SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 119.0 11.6 123 580-705 13-136 (193)
141 1a9n_A U2A', U2A'; complex (nu 99.3 5.4E-12 1.8E-16 120.6 7.9 104 574-681 16-123 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.5E-16 117.9 7.9 131 595-731 14-152 (176)
143 1w8a_A SLIT protein; signaling 99.2 4.5E-11 1.6E-15 115.8 11.5 125 602-730 10-137 (192)
144 1ds9_A Outer arm dynein; leuci 99.2 7.5E-13 2.6E-17 129.3 -2.3 132 589-725 37-180 (198)
145 2wfh_A SLIT homolog 2 protein 99.2 1E-10 3.4E-15 113.3 12.3 124 602-730 12-137 (193)
146 1hqc_A RUVB; extended AAA-ATPa 99.2 9.8E-11 3.4E-15 124.1 12.8 271 163-480 11-324 (324)
147 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 111.7 11.2 125 579-706 9-135 (177)
148 1ds9_A Outer arm dynein; leuci 99.1 1.8E-12 6E-17 126.6 -3.4 128 570-701 41-180 (198)
149 1sxj_B Activator 1 37 kDa subu 99.1 5.4E-10 1.9E-14 118.3 14.6 186 164-375 21-209 (323)
150 3sb4_A Hypothetical leucine ri 99.1 2.7E-10 9.3E-15 120.8 11.8 101 694-810 225-327 (329)
151 2o6r_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 106.0 12.3 126 601-730 8-135 (177)
152 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 103.4 9.1 100 580-682 15-116 (174)
153 1iqp_A RFCS; clamp loader, ext 99.0 5.8E-09 2E-13 110.5 15.1 190 163-379 24-215 (327)
154 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.6E-14 102.9 9.0 102 579-682 11-113 (170)
155 3te6_A Regulatory protein SIR3 98.9 1.3E-08 4.4E-13 104.8 16.5 178 164-345 20-213 (318)
156 1jr3_A DNA polymerase III subu 98.9 3.4E-08 1.2E-12 106.8 16.9 196 164-376 16-221 (373)
157 4fdw_A Leucine rich hypothetic 98.9 2.4E-08 8.1E-13 108.2 15.3 242 545-815 131-381 (401)
158 2r9u_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 97.2 9.6 100 603-706 15-116 (174)
159 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.6E-13 96.7 9.5 101 602-705 11-112 (170)
160 4fdw_A Leucine rich hypothetic 98.8 8.1E-08 2.8E-12 104.0 17.1 242 547-815 110-356 (401)
161 3un9_A NLR family member X1; l 98.8 1.2E-09 4.1E-14 117.2 2.6 82 648-729 155-249 (372)
162 3un9_A NLR family member X1; l 98.8 2.5E-09 8.6E-14 114.7 4.7 160 549-708 71-252 (372)
163 2chq_A Replication factor C sm 98.8 3.4E-08 1.2E-12 104.2 13.0 183 164-376 17-204 (319)
164 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5.2E-13 107.3 9.6 150 576-730 100-308 (329)
165 3pfi_A Holliday junction ATP-d 98.7 5E-07 1.7E-11 96.0 19.0 182 163-377 28-228 (338)
166 2ifg_A High affinity nerve gro 98.7 4.6E-08 1.6E-12 104.5 9.5 99 582-682 13-114 (347)
167 3bos_A Putative DNA replicatio 98.6 1E-07 3.5E-12 95.9 10.6 176 164-378 28-219 (242)
168 1sxj_D Activator 1 41 kDa subu 98.6 1.9E-07 6.4E-12 100.0 13.3 197 163-376 36-235 (353)
169 2ra8_A Uncharacterized protein 98.6 5.1E-08 1.8E-12 103.5 6.7 60 670-729 251-317 (362)
170 2ra8_A Uncharacterized protein 98.6 8.5E-08 2.9E-12 101.8 8.3 150 577-729 107-289 (362)
171 1jbk_A CLPB protein; beta barr 98.6 2.2E-07 7.5E-12 89.7 10.6 151 163-338 21-193 (195)
172 3h4m_A Proteasome-activating n 98.5 6.4E-07 2.2E-11 92.6 13.5 189 163-375 16-230 (285)
173 1sxj_E Activator 1 40 kDa subu 98.5 2.7E-07 9.4E-12 98.7 10.3 198 164-377 14-238 (354)
174 1sxj_A Activator 1 95 kDa subu 98.5 6.3E-07 2.2E-11 100.5 13.3 198 163-375 38-252 (516)
175 3pvs_A Replication-associated 98.5 9.8E-07 3.3E-11 96.3 14.3 180 164-376 26-215 (447)
176 2z4s_A Chromosomal replication 98.5 9.5E-07 3.3E-11 96.7 14.2 162 191-375 130-305 (440)
177 3uk6_A RUVB-like 2; hexameric 98.5 2.6E-06 9E-11 91.6 17.1 202 163-377 43-304 (368)
178 2ifg_A High affinity nerve gro 98.5 3.2E-07 1.1E-11 97.9 9.4 101 603-707 11-115 (347)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.4E-06 1.9E-10 84.3 17.6 190 164-375 6-221 (262)
180 3syl_A Protein CBBX; photosynt 98.4 2.6E-06 9.1E-11 89.0 15.6 166 165-347 32-221 (309)
181 3u61_B DNA polymerase accessor 98.4 2.2E-06 7.6E-11 90.2 14.1 182 163-375 25-215 (324)
182 1a5t_A Delta prime, HOLB; zinc 98.4 9.2E-06 3.2E-10 85.6 18.2 173 170-376 8-205 (334)
183 1d2n_A N-ethylmaleimide-sensit 98.3 6.5E-06 2.2E-10 84.2 15.6 174 164-367 33-228 (272)
184 1l8q_A Chromosomal replication 98.3 1.2E-05 4.1E-10 84.5 16.9 157 191-373 37-205 (324)
185 1sxj_C Activator 1 40 kDa subu 98.3 5.3E-06 1.8E-10 87.9 14.2 179 164-375 25-211 (340)
186 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.9E-05 6.4E-10 82.6 18.0 191 164-377 12-224 (322)
187 3d8b_A Fidgetin-like protein 1 98.3 6.2E-06 2.1E-10 87.8 14.6 191 164-378 84-297 (357)
188 3eie_A Vacuolar protein sortin 98.3 1E-05 3.5E-10 84.9 15.4 189 163-377 17-229 (322)
189 2p65_A Hypothetical protein PF 98.3 1.5E-06 5.2E-11 83.2 7.9 46 163-214 21-66 (187)
190 3n70_A Transport activator; si 98.3 1.7E-06 5.7E-11 79.0 7.7 115 165-310 2-116 (145)
191 3b9p_A CG5977-PA, isoform A; A 98.2 1.8E-05 6.2E-10 82.1 15.9 184 164-376 21-233 (297)
192 2qp9_X Vacuolar protein sortin 98.2 2.4E-05 8.3E-10 83.0 16.9 188 164-376 51-261 (355)
193 1io0_A Tropomodulin; LRR prote 98.2 1.8E-06 6E-11 82.5 6.3 94 567-660 26-135 (185)
194 3ec2_A DNA replication protein 98.2 6.8E-06 2.3E-10 78.1 10.3 122 169-310 19-143 (180)
195 4fs7_A Uncharacterized protein 98.2 3.9E-05 1.3E-09 83.1 17.5 129 544-680 65-217 (394)
196 3vfd_A Spastin; ATPase, microt 98.1 3.5E-05 1.2E-09 83.1 16.4 190 163-376 114-326 (389)
197 2zan_A Vacuolar protein sortin 98.1 3.2E-05 1.1E-09 84.7 15.7 191 163-376 133-345 (444)
198 3cf0_A Transitional endoplasmi 98.1 5.9E-05 2E-09 78.1 16.7 183 164-371 15-223 (301)
199 1in4_A RUVB, holliday junction 98.1 0.00015 5E-09 76.4 19.9 181 164-377 25-224 (334)
200 3co5_A Putative two-component 98.0 3.5E-06 1.2E-10 76.6 5.3 110 164-308 4-114 (143)
201 4fs7_A Uncharacterized protein 98.0 4.2E-05 1.4E-09 82.8 14.0 36 777-814 340-376 (394)
202 1io0_A Tropomodulin; LRR prote 98.0 1.1E-05 3.6E-10 77.0 7.9 120 542-661 28-164 (185)
203 4gt6_A Cell surface protein; l 98.0 0.00011 3.9E-09 79.4 16.4 57 754-815 311-368 (394)
204 4fcw_A Chaperone protein CLPB; 98.0 3.8E-05 1.3E-09 80.2 12.1 139 164-309 17-169 (311)
205 1lv7_A FTSH; alpha/beta domain 97.9 0.00012 4.2E-09 73.8 15.3 189 163-375 11-224 (257)
206 2gno_A DNA polymerase III, gam 97.9 4.1E-05 1.4E-09 78.9 11.5 149 168-343 1-152 (305)
207 4b4t_J 26S protease regulatory 97.9 8.7E-05 3E-09 78.2 13.9 181 164-369 148-354 (405)
208 3e4g_A ATP synthase subunit S, 97.9 8.1E-06 2.8E-10 75.7 4.8 38 696-733 115-153 (176)
209 3e4g_A ATP synthase subunit S, 97.9 1.1E-05 3.6E-10 74.9 5.2 86 624-709 61-153 (176)
210 3hu3_A Transitional endoplasmi 97.9 3.7E-05 1.3E-09 84.8 10.5 187 164-375 204-414 (489)
211 2bjv_A PSP operon transcriptio 97.9 6.2E-05 2.1E-09 76.5 11.4 132 164-309 6-150 (265)
212 4b4t_L 26S protease subunit RP 97.8 0.00025 8.6E-09 76.1 15.9 181 164-369 181-387 (437)
213 2c9o_A RUVB-like 1; hexameric 97.8 7.9E-05 2.7E-09 82.1 12.3 99 272-376 297-410 (456)
214 1qvr_A CLPB protein; coiled co 97.8 5.9E-05 2E-09 90.0 12.1 158 164-343 170-345 (854)
215 1ojl_A Transcriptional regulat 97.8 0.00011 3.8E-09 75.9 12.7 163 164-341 2-188 (304)
216 3pxg_A Negative regulator of g 97.8 0.0001 3.4E-09 81.4 13.1 148 164-343 180-338 (468)
217 1ofh_A ATP-dependent HSL prote 97.8 0.00012 4.2E-09 76.2 13.2 154 163-341 14-213 (310)
218 2w58_A DNAI, primosome compone 97.8 2E-05 6.8E-10 76.5 6.6 120 171-310 36-159 (202)
219 4b4t_H 26S protease regulatory 97.8 0.00024 8.3E-09 75.9 14.7 180 164-368 209-414 (467)
220 3rw6_A Nuclear RNA export fact 97.7 2E-05 6.7E-10 79.0 4.6 37 574-610 167-206 (267)
221 2ce7_A Cell division protein F 97.7 0.00038 1.3E-08 75.9 15.1 181 164-369 16-221 (476)
222 4b4t_I 26S protease regulatory 97.7 0.00037 1.3E-08 73.7 13.7 180 164-368 182-387 (437)
223 4b4t_M 26S protease regulatory 97.7 0.00022 7.6E-09 76.4 12.2 179 164-368 181-386 (434)
224 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00022 7.4E-09 84.3 13.2 158 164-343 186-362 (758)
225 2r62_A Cell division protease 97.7 1.7E-05 5.7E-10 80.9 3.1 161 163-344 10-197 (268)
226 4gt6_A Cell surface protein; l 97.7 0.0006 2.1E-08 73.7 15.6 127 667-814 261-388 (394)
227 3rw6_A Nuclear RNA export fact 97.7 1.6E-05 5.3E-10 79.8 2.7 61 622-683 168-232 (267)
228 3pxi_A Negative regulator of g 97.6 8.2E-05 2.8E-09 87.8 8.8 160 163-343 490-675 (758)
229 4b4t_K 26S protease regulatory 97.6 0.00048 1.7E-08 73.8 13.8 180 164-368 172-378 (428)
230 3pxi_A Negative regulator of g 97.6 0.00038 1.3E-08 82.1 13.4 151 164-343 180-338 (758)
231 2kjq_A DNAA-related protein; s 97.5 6.4E-05 2.2E-09 68.5 3.8 86 192-309 37-124 (149)
232 2r44_A Uncharacterized protein 97.4 0.00043 1.5E-08 72.8 10.4 155 164-345 27-200 (331)
233 3cf2_A TER ATPase, transitiona 97.4 0.0011 3.7E-08 76.7 13.3 182 164-369 204-407 (806)
234 1qvr_A CLPB protein; coiled co 97.4 0.00071 2.4E-08 80.7 12.2 136 164-309 558-710 (854)
235 4h09_A Hypothetical leucine ri 97.3 0.0095 3.3E-07 63.7 19.8 54 755-812 287-341 (379)
236 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00049 1.7E-08 81.3 10.0 136 163-309 457-607 (758)
237 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0037 1.3E-07 68.6 14.0 180 162-369 29-236 (499)
238 1ypw_A Transitional endoplasmi 97.1 0.0011 3.8E-08 78.0 10.2 161 164-344 204-386 (806)
239 1ixz_A ATP-dependent metallopr 97.1 0.0022 7.7E-08 64.3 11.2 182 164-369 16-221 (254)
240 1jr3_D DNA polymerase III, del 97.1 0.0097 3.3E-07 62.7 16.1 158 191-375 18-184 (343)
241 3t15_A Ribulose bisphosphate c 97.1 0.00098 3.4E-08 68.4 8.1 26 189-214 34-59 (293)
242 1um8_A ATP-dependent CLP prote 97.0 0.0077 2.6E-07 64.4 15.1 51 164-214 21-95 (376)
243 2qgz_A Helicase loader, putati 97.0 0.00044 1.5E-08 71.5 4.9 57 169-229 133-189 (308)
244 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.0053 1.8E-07 67.5 13.5 42 165-214 23-64 (500)
245 2cvh_A DNA repair and recombin 97.0 0.0026 8.8E-08 62.2 10.1 85 191-281 20-116 (220)
246 1iy2_A ATP-dependent metallopr 96.9 0.0033 1.1E-07 64.0 10.6 183 163-369 39-245 (278)
247 2x8a_A Nuclear valosin-contain 96.9 0.011 3.7E-07 59.8 14.3 158 164-343 10-191 (274)
248 2b8t_A Thymidine kinase; deoxy 96.9 0.00083 2.8E-08 65.2 5.6 112 191-310 12-126 (223)
249 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00048 1.6E-08 70.0 3.9 69 191-281 123-193 (331)
250 1g8p_A Magnesium-chelatase 38 96.9 0.005 1.7E-07 65.1 12.2 45 164-214 24-68 (350)
251 3m6a_A ATP-dependent protease 96.9 0.002 7E-08 72.2 9.0 161 164-343 81-266 (543)
252 1g5t_A COB(I)alamin adenosyltr 96.6 0.0072 2.5E-07 56.7 8.8 117 192-310 29-163 (196)
253 1ye8_A Protein THEP1, hypothet 96.4 0.021 7.1E-07 53.4 10.9 67 267-335 96-168 (178)
254 4h09_A Hypothetical leucine ri 96.3 0.021 7.3E-07 61.0 12.2 104 620-727 213-318 (379)
255 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.013 4.4E-07 57.7 9.2 114 192-310 24-168 (235)
256 2px0_A Flagellar biosynthesis 96.2 0.046 1.6E-06 55.8 13.1 86 191-279 105-191 (296)
257 3lw7_A Adenylate kinase relate 96.2 0.033 1.1E-06 51.8 11.3 20 192-211 2-21 (179)
258 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0076 2.6E-07 56.8 6.1 68 568-635 32-109 (197)
259 3hr8_A Protein RECA; alpha and 96.0 0.016 5.4E-07 60.5 8.8 85 190-281 60-150 (356)
260 3cf2_A TER ATPase, transitiona 96.0 0.022 7.5E-07 65.9 10.7 162 162-343 475-661 (806)
261 1cr0_A DNA primase/helicase; R 95.9 0.023 7.9E-07 58.3 9.6 37 192-229 36-72 (296)
262 3io5_A Recombination and repai 95.9 0.025 8.7E-07 57.1 9.2 84 193-281 30-122 (333)
263 1xp8_A RECA protein, recombina 95.8 0.022 7.7E-07 59.8 9.1 83 191-280 74-162 (366)
264 1pgv_A TMD-1, tropomodulin TMD 95.8 0.025 8.4E-07 53.3 8.1 118 542-659 33-168 (197)
265 1rz3_A Hypothetical protein rb 95.8 0.0095 3.3E-07 57.2 5.5 42 169-213 3-44 (201)
266 2z43_A DNA repair and recombin 95.7 0.023 7.8E-07 59.1 8.8 55 191-246 107-165 (324)
267 2zr9_A Protein RECA, recombina 95.7 0.026 8.8E-07 59.1 9.1 84 191-281 61-150 (349)
268 2orw_A Thymidine kinase; TMTK, 95.7 0.0021 7.1E-08 60.7 0.6 108 192-310 4-113 (184)
269 2cbz_A Multidrug resistance-as 95.6 0.073 2.5E-06 52.3 11.5 62 253-314 127-193 (237)
270 2i1q_A DNA repair and recombin 95.6 0.026 8.9E-07 58.7 8.6 55 191-246 98-166 (322)
271 1v5w_A DMC1, meiotic recombina 95.6 0.04 1.4E-06 57.7 9.9 51 190-240 121-175 (343)
272 3tqc_A Pantothenate kinase; bi 95.6 0.034 1.2E-06 57.1 9.0 46 166-213 69-114 (321)
273 1n0w_A DNA repair protein RAD5 95.6 0.021 7.3E-07 56.5 7.5 48 191-238 24-75 (243)
274 3ice_A Transcription terminati 95.5 0.026 9E-07 58.6 7.7 53 175-233 163-216 (422)
275 1odf_A YGR205W, hypothetical 3 95.5 0.069 2.4E-06 54.2 10.8 27 189-215 29-55 (290)
276 2pze_A Cystic fibrosis transme 95.3 0.18 6.3E-06 49.1 13.1 63 253-315 130-195 (229)
277 3c8u_A Fructokinase; YP_612366 95.3 0.013 4.3E-07 56.7 4.5 40 171-214 6-45 (208)
278 1u94_A RECA protein, recombina 95.3 0.034 1.2E-06 58.2 7.9 83 191-280 63-151 (356)
279 3bh0_A DNAB-like replicative h 95.2 0.12 4.2E-06 53.2 12.1 52 191-246 68-119 (315)
280 1qhx_A CPT, protein (chloramph 95.1 0.0093 3.2E-07 55.9 2.9 22 192-213 4-25 (178)
281 3upu_A ATP-dependent DNA helic 95.1 0.049 1.7E-06 59.7 9.1 103 193-310 47-165 (459)
282 1ly1_A Polynucleotide kinase; 95.0 0.012 4.1E-07 55.2 3.2 22 192-213 3-24 (181)
283 1vma_A Cell division protein F 94.9 0.086 3E-06 53.8 9.7 27 189-215 102-128 (306)
284 3kb2_A SPBC2 prophage-derived 94.9 0.012 4E-07 54.8 2.9 22 192-213 2-23 (173)
285 1ypw_A Transitional endoplasmi 94.9 0.0051 1.7E-07 72.4 0.4 52 163-214 476-534 (806)
286 3tui_C Methionine import ATP-b 94.9 0.13 4.5E-06 53.6 10.9 66 252-317 162-231 (366)
287 3hws_A ATP-dependent CLP prote 94.9 0.018 6.3E-07 61.0 4.6 50 165-214 16-74 (363)
288 1gvn_B Zeta; postsegregational 94.9 0.025 8.6E-07 57.5 5.4 25 189-213 31-55 (287)
289 1zp6_A Hypothetical protein AT 94.8 0.015 5.1E-07 55.2 3.3 24 191-214 9-32 (191)
290 1sky_E F1-ATPase, F1-ATP synth 94.7 0.046 1.6E-06 58.7 7.2 50 193-243 153-203 (473)
291 3kl4_A SRP54, signal recogniti 94.7 0.26 8.7E-06 52.8 12.9 26 190-215 96-121 (433)
292 3dm5_A SRP54, signal recogniti 94.7 0.25 8.4E-06 52.9 12.6 25 190-214 99-123 (443)
293 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.6E-07 55.4 3.2 23 191-213 25-47 (199)
294 4a1f_A DNAB helicase, replicat 94.6 0.1 3.5E-06 53.9 9.2 51 192-246 47-97 (338)
295 2p5t_B PEZT; postsegregational 94.6 0.027 9.3E-07 56.2 4.8 40 173-213 15-54 (253)
296 2ga8_A Hypothetical 39.9 kDa p 94.6 0.032 1.1E-06 57.6 5.3 46 167-214 2-47 (359)
297 2rhm_A Putative kinase; P-loop 94.5 0.018 6E-07 54.8 3.2 24 190-213 4-27 (193)
298 3trf_A Shikimate kinase, SK; a 94.5 0.017 5.8E-07 54.5 2.9 23 191-213 5-27 (185)
299 3uie_A Adenylyl-sulfate kinase 94.5 0.022 7.5E-07 54.5 3.7 25 190-214 24-48 (200)
300 1kag_A SKI, shikimate kinase I 94.5 0.015 5.3E-07 54.1 2.5 22 192-213 5-26 (173)
301 1kgd_A CASK, peripheral plasma 94.4 0.019 6.6E-07 53.8 3.1 24 191-214 5-28 (180)
302 3t61_A Gluconokinase; PSI-biol 94.4 0.016 5.5E-07 55.6 2.5 24 191-214 18-41 (202)
303 1tue_A Replication protein E1; 94.3 0.028 9.4E-07 53.0 3.9 38 172-214 44-81 (212)
304 3jvv_A Twitching mobility prot 94.3 0.032 1.1E-06 58.4 4.7 113 192-315 124-236 (356)
305 1ukz_A Uridylate kinase; trans 94.3 0.024 8.2E-07 54.4 3.5 25 189-213 13-37 (203)
306 3tlx_A Adenylate kinase 2; str 94.2 0.033 1.1E-06 55.2 4.5 24 190-213 28-51 (243)
307 1knq_A Gluconate kinase; ALFA/ 94.2 0.027 9.2E-07 52.5 3.7 23 191-213 8-30 (175)
308 1nks_A Adenylate kinase; therm 94.2 0.021 7.3E-07 54.2 3.0 23 192-214 2-24 (194)
309 1z47_A CYSA, putative ABC-tran 94.2 0.29 9.9E-06 50.9 11.7 64 254-317 146-213 (355)
310 4eun_A Thermoresistant glucoki 94.2 0.023 7.9E-07 54.4 3.2 23 191-213 29-51 (200)
311 1tev_A UMP-CMP kinase; ploop, 94.2 0.023 7.8E-07 54.0 3.2 23 191-213 3-25 (196)
312 1y63_A LMAJ004144AAA protein; 94.2 0.024 8.1E-07 53.4 3.1 23 191-213 10-32 (184)
313 1pzn_A RAD51, DNA repair and r 94.2 0.074 2.5E-06 55.7 7.2 46 189-234 129-178 (349)
314 3lda_A DNA repair protein RAD5 94.2 0.11 3.9E-06 55.1 8.7 55 191-246 178-236 (400)
315 1zuh_A Shikimate kinase; alpha 94.2 0.022 7.6E-07 52.7 2.9 24 190-213 6-29 (168)
316 3tau_A Guanylate kinase, GMP k 94.1 0.026 8.9E-07 54.4 3.4 24 191-214 8-31 (208)
317 1kht_A Adenylate kinase; phosp 94.1 0.022 7.5E-07 54.0 2.9 23 192-214 4-26 (192)
318 1q57_A DNA primase/helicase; d 94.1 0.13 4.5E-06 57.0 9.6 55 191-248 242-296 (503)
319 3iij_A Coilin-interacting nucl 94.1 0.019 6.6E-07 53.8 2.4 23 191-213 11-33 (180)
320 4gp7_A Metallophosphoesterase; 94.1 0.026 8.8E-07 52.4 3.1 23 191-213 9-31 (171)
321 1uf9_A TT1252 protein; P-loop, 94.1 0.025 8.6E-07 54.2 3.2 25 189-213 6-30 (203)
322 2bdt_A BH3686; alpha-beta prot 94.0 0.029 9.8E-07 53.1 3.4 22 192-213 3-24 (189)
323 3umf_A Adenylate kinase; rossm 94.0 0.029 9.8E-07 54.1 3.3 26 189-214 27-52 (217)
324 2cdn_A Adenylate kinase; phosp 94.0 0.027 9.4E-07 53.9 3.2 25 189-213 18-42 (201)
325 2c95_A Adenylate kinase 1; tra 93.9 0.025 8.4E-07 53.9 2.8 23 191-213 9-31 (196)
326 2xxa_A Signal recognition part 93.9 0.22 7.5E-06 53.6 10.5 27 189-215 98-124 (433)
327 3tr0_A Guanylate kinase, GMP k 93.9 0.029 9.9E-07 53.9 3.3 22 192-213 8-29 (205)
328 3cm0_A Adenylate kinase; ATP-b 93.9 0.03 1E-06 52.7 3.4 23 191-213 4-26 (186)
329 2qt1_A Nicotinamide riboside k 93.9 0.031 1.1E-06 53.8 3.5 25 190-214 20-44 (207)
330 3fwy_A Light-independent proto 93.9 0.03 1E-06 57.6 3.5 40 189-230 46-85 (314)
331 2qor_A Guanylate kinase; phosp 93.9 0.023 7.9E-07 54.6 2.5 24 191-214 12-35 (204)
332 3asz_A Uridine kinase; cytidin 93.9 0.03 1E-06 54.1 3.3 24 190-213 5-28 (211)
333 3a00_A Guanylate kinase, GMP k 93.9 0.024 8.3E-07 53.5 2.6 23 192-214 2-24 (186)
334 2ze6_A Isopentenyl transferase 93.9 0.031 1E-06 55.7 3.4 22 192-213 2-23 (253)
335 3e70_C DPA, signal recognition 93.8 0.2 6.9E-06 51.7 9.6 25 190-214 128-152 (328)
336 1via_A Shikimate kinase; struc 93.8 0.023 7.8E-07 53.0 2.3 21 193-213 6-26 (175)
337 1xjc_A MOBB protein homolog; s 93.8 0.032 1.1E-06 51.2 3.1 25 190-214 3-27 (169)
338 2yvu_A Probable adenylyl-sulfa 93.8 0.037 1.3E-06 52.2 3.7 25 190-214 12-36 (186)
339 2j41_A Guanylate kinase; GMP, 93.8 0.032 1.1E-06 53.6 3.3 24 191-214 6-29 (207)
340 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.031 1E-06 56.1 3.2 24 191-214 4-27 (260)
341 1jjv_A Dephospho-COA kinase; P 93.8 0.035 1.2E-06 53.4 3.5 22 192-213 3-24 (206)
342 1aky_A Adenylate kinase; ATP:A 93.8 0.029 9.8E-07 54.6 2.9 23 191-213 4-26 (220)
343 2z0h_A DTMP kinase, thymidylat 93.7 0.084 2.9E-06 50.1 6.2 22 193-214 2-23 (197)
344 2jaq_A Deoxyguanosine kinase; 93.7 0.029 1E-06 53.7 3.0 22 193-214 2-23 (205)
345 2q6t_A DNAB replication FORK h 93.7 0.16 5.6E-06 55.2 9.2 54 191-247 200-253 (444)
346 2ck3_D ATP synthase subunit be 93.7 0.34 1.2E-05 51.9 11.2 65 175-245 142-207 (482)
347 2plr_A DTMP kinase, probable t 93.7 0.032 1.1E-06 53.8 3.2 23 192-214 5-27 (213)
348 2iyv_A Shikimate kinase, SK; t 93.7 0.023 7.9E-07 53.5 2.1 22 192-213 3-24 (184)
349 3rlf_A Maltose/maltodextrin im 93.7 0.18 6.2E-06 52.9 9.0 22 192-213 30-51 (381)
350 2vli_A Antibiotic resistance p 93.7 0.021 7.1E-07 53.7 1.7 23 191-213 5-27 (183)
351 2r6a_A DNAB helicase, replicat 93.6 0.18 6.2E-06 55.0 9.4 51 191-244 203-253 (454)
352 1uj2_A Uridine-cytidine kinase 93.6 0.034 1.2E-06 55.4 3.3 25 189-213 20-44 (252)
353 1qf9_A UMP/CMP kinase, protein 93.6 0.036 1.2E-06 52.5 3.3 24 190-213 5-28 (194)
354 2bwj_A Adenylate kinase 5; pho 93.6 0.029 1E-06 53.5 2.7 23 191-213 12-34 (199)
355 1nn5_A Similar to deoxythymidy 93.6 0.082 2.8E-06 51.0 5.9 24 191-214 9-32 (215)
356 1fx0_B ATP synthase beta chain 93.6 0.15 5.2E-06 54.8 8.3 63 176-244 155-218 (498)
357 1e6c_A Shikimate kinase; phosp 93.6 0.027 9.2E-07 52.3 2.3 22 192-213 3-24 (173)
358 2bbw_A Adenylate kinase 4, AK4 93.6 0.035 1.2E-06 55.1 3.2 23 191-213 27-49 (246)
359 2if2_A Dephospho-COA kinase; a 93.5 0.034 1.2E-06 53.3 3.0 21 193-213 3-23 (204)
360 2pt5_A Shikimate kinase, SK; a 93.4 0.037 1.3E-06 51.1 3.0 21 193-213 2-22 (168)
361 1ex7_A Guanylate kinase; subst 93.4 0.03 1E-06 52.5 2.3 22 192-213 2-23 (186)
362 2grj_A Dephospho-COA kinase; T 93.4 0.044 1.5E-06 51.8 3.5 25 189-213 10-34 (192)
363 1cke_A CK, MSSA, protein (cyti 93.4 0.038 1.3E-06 54.0 3.2 22 192-213 6-27 (227)
364 2hf9_A Probable hydrogenase ni 93.4 0.064 2.2E-06 52.3 4.8 39 170-214 23-61 (226)
365 1ny5_A Transcriptional regulat 93.4 0.42 1.4E-05 50.8 11.4 132 165-309 138-281 (387)
366 1g41_A Heat shock protein HSLU 93.4 0.048 1.6E-06 58.5 4.0 52 163-214 14-73 (444)
367 1lvg_A Guanylate kinase, GMP k 93.4 0.033 1.1E-06 53.2 2.5 23 191-213 4-26 (198)
368 3l0o_A Transcription terminati 93.4 0.38 1.3E-05 49.9 10.4 36 174-214 163-198 (427)
369 3ney_A 55 kDa erythrocyte memb 93.3 0.042 1.4E-06 51.9 3.2 24 190-213 18-41 (197)
370 2f6r_A COA synthase, bifunctio 93.3 0.043 1.5E-06 55.6 3.5 24 189-212 73-96 (281)
371 3e1s_A Exodeoxyribonuclease V, 93.3 0.12 3.9E-06 58.2 7.2 103 192-307 205-313 (574)
372 2pbr_A DTMP kinase, thymidylat 93.3 0.04 1.4E-06 52.3 3.0 22 193-214 2-23 (195)
373 2wwf_A Thymidilate kinase, put 93.3 0.037 1.3E-06 53.4 2.8 25 190-214 9-33 (212)
374 1zd8_A GTP:AMP phosphotransfer 93.2 0.038 1.3E-06 54.1 2.7 23 191-213 7-29 (227)
375 3aez_A Pantothenate kinase; tr 93.1 0.05 1.7E-06 55.9 3.6 26 189-214 88-113 (312)
376 2ffh_A Protein (FFH); SRP54, s 93.1 0.31 1.1E-05 52.1 9.8 24 191-214 98-121 (425)
377 2jeo_A Uridine-cytidine kinase 93.1 0.051 1.7E-06 53.9 3.5 23 191-213 25-47 (245)
378 3dzd_A Transcriptional regulat 93.1 0.18 6.2E-06 53.2 8.0 118 164-295 129-247 (368)
379 2wsm_A Hydrogenase expression/ 93.1 0.065 2.2E-06 52.1 4.3 41 168-214 13-53 (221)
380 2v54_A DTMP kinase, thymidylat 93.0 0.046 1.6E-06 52.3 3.0 24 191-214 4-27 (204)
381 3llm_A ATP-dependent RNA helic 93.0 0.31 1.1E-05 47.7 9.1 90 192-282 77-188 (235)
382 3rfe_A Platelet glycoprotein I 92.9 0.1 3.5E-06 45.6 4.9 52 581-635 12-66 (130)
383 2pez_A Bifunctional 3'-phospho 92.9 0.058 2E-06 50.4 3.5 24 191-214 5-28 (179)
384 2j37_W Signal recognition part 92.9 0.7 2.4E-05 50.6 12.4 42 173-214 80-124 (504)
385 1htw_A HI0065; nucleotide-bind 92.9 0.065 2.2E-06 48.8 3.6 24 191-214 33-56 (158)
386 1znw_A Guanylate kinase, GMP k 92.9 0.052 1.8E-06 52.2 3.1 23 191-213 20-42 (207)
387 1vht_A Dephospho-COA kinase; s 92.8 0.062 2.1E-06 52.1 3.6 23 191-213 4-26 (218)
388 1ls1_A Signal recognition part 92.8 0.31 1.1E-05 49.6 8.9 24 191-214 98-121 (295)
389 1zak_A Adenylate kinase; ATP:A 92.8 0.041 1.4E-06 53.6 2.3 24 191-214 5-28 (222)
390 1zu4_A FTSY; GTPase, signal re 92.8 0.29 1E-05 50.3 8.8 25 190-214 104-128 (320)
391 3fb4_A Adenylate kinase; psych 92.8 0.051 1.8E-06 52.6 3.0 21 193-213 2-22 (216)
392 1m7g_A Adenylylsulfate kinase; 92.8 0.059 2E-06 52.0 3.4 24 191-214 25-48 (211)
393 2ewv_A Twitching motility prot 92.7 0.32 1.1E-05 51.3 9.2 112 191-314 136-248 (372)
394 2j9r_A Thymidine kinase; TK1, 92.7 0.1 3.6E-06 49.6 4.8 110 191-311 28-139 (214)
395 1z6g_A Guanylate kinase; struc 92.7 0.049 1.7E-06 52.9 2.6 23 191-213 23-45 (218)
396 4e22_A Cytidylate kinase; P-lo 92.7 0.057 2E-06 53.7 3.2 23 191-213 27-49 (252)
397 3dl0_A Adenylate kinase; phosp 92.6 0.055 1.9E-06 52.4 3.0 21 193-213 2-22 (216)
398 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.27 9.3E-06 50.9 8.4 106 192-312 172-277 (330)
399 3hjn_A DTMP kinase, thymidylat 92.6 0.16 5.6E-06 48.1 6.2 49 193-243 2-50 (197)
400 1rj9_A FTSY, signal recognitio 92.6 0.059 2E-06 55.1 3.3 25 190-214 101-125 (304)
401 1sq5_A Pantothenate kinase; P- 92.6 0.12 4.2E-06 53.0 5.6 24 190-213 79-102 (308)
402 1s96_A Guanylate kinase, GMP k 92.6 0.062 2.1E-06 52.0 3.2 24 191-214 16-39 (219)
403 1gtv_A TMK, thymidylate kinase 92.5 0.033 1.1E-06 53.9 1.1 22 193-214 2-23 (214)
404 2ged_A SR-beta, signal recogni 92.4 0.11 3.9E-06 48.9 4.8 26 189-214 46-71 (193)
405 1xx6_A Thymidine kinase; NESG, 92.3 0.049 1.7E-06 51.4 2.0 109 191-310 8-118 (191)
406 3bgw_A DNAB-like replicative h 92.3 0.67 2.3E-05 50.1 11.3 52 191-246 197-248 (444)
407 2yhs_A FTSY, cell division pro 92.3 0.43 1.5E-05 51.6 9.5 25 190-214 292-316 (503)
408 3k1j_A LON protease, ATP-depen 92.2 0.075 2.6E-06 60.4 3.9 43 164-214 41-83 (604)
409 1j8m_F SRP54, signal recogniti 92.2 0.5 1.7E-05 48.0 9.6 24 191-214 98-121 (297)
410 3vkw_A Replicase large subunit 92.2 0.45 1.5E-05 50.7 9.5 104 189-308 159-268 (446)
411 2i3b_A HCR-ntpase, human cance 92.2 0.064 2.2E-06 50.5 2.7 23 193-215 3-25 (189)
412 3p32_A Probable GTPase RV1496/ 92.1 0.14 4.8E-06 53.8 5.6 38 173-214 65-102 (355)
413 3a8t_A Adenylate isopentenyltr 92.1 0.087 3E-06 54.0 3.7 24 191-214 40-63 (339)
414 3cmu_A Protein RECA, recombina 92.1 0.17 5.8E-06 64.1 6.9 85 189-280 1425-1515(2050)
415 3r20_A Cytidylate kinase; stru 92.0 0.077 2.6E-06 51.6 3.1 23 191-213 9-31 (233)
416 4a74_A DNA repair and recombin 92.0 0.077 2.6E-06 51.8 3.2 23 191-213 25-47 (231)
417 3nwj_A ATSK2; P loop, shikimat 92.0 0.064 2.2E-06 53.0 2.6 22 192-213 49-70 (250)
418 4eaq_A DTMP kinase, thymidylat 92.0 0.15 5E-06 49.8 5.1 26 190-215 25-50 (229)
419 3crm_A TRNA delta(2)-isopenten 92.0 0.08 2.8E-06 54.1 3.3 23 191-213 5-27 (323)
420 3b9q_A Chloroplast SRP recepto 92.0 0.086 2.9E-06 53.8 3.6 25 190-214 99-123 (302)
421 2ehv_A Hypothetical protein PH 92.0 0.075 2.5E-06 52.8 3.1 23 191-213 30-52 (251)
422 3ake_A Cytidylate kinase; CMP 92.0 0.074 2.5E-06 51.0 3.0 21 193-213 4-24 (208)
423 1ak2_A Adenylate kinase isoenz 92.0 0.075 2.6E-06 52.2 3.0 24 191-214 16-39 (233)
424 1tf7_A KAIC; homohexamer, hexa 92.0 0.14 4.9E-06 57.0 5.7 113 191-310 281-417 (525)
425 3d3q_A TRNA delta(2)-isopenten 91.9 0.078 2.7E-06 54.6 3.2 22 192-213 8-29 (340)
426 2xb4_A Adenylate kinase; ATP-b 91.9 0.076 2.6E-06 51.7 3.0 21 193-213 2-22 (223)
427 3vr4_A V-type sodium ATPase ca 91.9 0.43 1.5E-05 52.1 8.9 59 175-242 221-280 (600)
428 3ld9_A DTMP kinase, thymidylat 91.9 0.21 7.1E-06 48.2 5.9 27 189-215 19-45 (223)
429 2f1r_A Molybdopterin-guanine d 91.9 0.055 1.9E-06 50.0 1.8 23 192-214 3-25 (171)
430 3be4_A Adenylate kinase; malar 91.8 0.076 2.6E-06 51.4 2.8 24 191-214 5-28 (217)
431 3b5x_A Lipid A export ATP-bind 91.8 0.66 2.3E-05 52.3 11.0 22 192-213 370-391 (582)
432 2onk_A Molybdate/tungstate ABC 91.8 0.085 2.9E-06 51.9 3.2 22 192-213 25-46 (240)
433 3lnc_A Guanylate kinase, GMP k 91.8 0.056 1.9E-06 53.0 1.9 22 191-212 27-48 (231)
434 3end_A Light-independent proto 91.8 0.17 5.8E-06 52.0 5.6 42 189-232 39-80 (307)
435 3foz_A TRNA delta(2)-isopenten 91.7 0.095 3.2E-06 52.9 3.5 25 189-213 8-32 (316)
436 3sr0_A Adenylate kinase; phosp 91.7 0.084 2.9E-06 50.5 3.0 86 193-293 2-96 (206)
437 1e4v_A Adenylate kinase; trans 91.7 0.078 2.7E-06 51.2 2.8 21 193-213 2-22 (214)
438 3exa_A TRNA delta(2)-isopenten 91.7 0.091 3.1E-06 53.2 3.2 24 191-214 3-26 (322)
439 1np6_A Molybdopterin-guanine d 91.7 0.096 3.3E-06 48.5 3.2 25 190-214 5-29 (174)
440 3zvl_A Bifunctional polynucleo 91.6 0.091 3.1E-06 56.6 3.5 26 189-214 256-281 (416)
441 1a7j_A Phosphoribulokinase; tr 91.6 0.042 1.4E-06 55.9 0.8 24 190-213 4-27 (290)
442 3tif_A Uncharacterized ABC tra 91.6 0.09 3.1E-06 51.6 3.1 22 192-213 32-53 (235)
443 4edh_A DTMP kinase, thymidylat 91.6 0.29 9.9E-06 47.0 6.6 24 191-214 6-29 (213)
444 2pcj_A ABC transporter, lipopr 91.5 0.09 3.1E-06 51.1 2.9 22 192-213 31-52 (224)
445 3mfy_A V-type ATP synthase alp 91.5 0.37 1.3E-05 52.4 7.8 59 175-242 216-275 (588)
446 1ltq_A Polynucleotide kinase; 91.5 0.092 3.1E-06 53.9 3.2 22 192-213 3-24 (301)
447 2dr3_A UPF0273 protein PH0284; 91.4 0.14 4.8E-06 50.6 4.4 39 191-231 23-61 (247)
448 3rfe_A Platelet glycoprotein I 91.4 0.24 8.3E-06 43.2 5.4 14 692-705 52-65 (130)
449 1q3t_A Cytidylate kinase; nucl 91.1 0.11 3.8E-06 51.0 3.3 25 189-213 14-38 (236)
450 3gfo_A Cobalt import ATP-bindi 91.1 0.11 3.6E-06 52.3 3.1 22 192-213 35-56 (275)
451 2og2_A Putative signal recogni 91.1 0.12 4.1E-06 54.0 3.5 25 190-214 156-180 (359)
452 3b85_A Phosphate starvation-in 91.1 0.081 2.8E-06 50.7 2.1 23 192-214 23-45 (208)
453 3lv8_A DTMP kinase, thymidylat 90.9 0.28 9.5E-06 47.9 5.8 36 191-227 27-62 (236)
454 1b0u_A Histidine permease; ABC 90.9 0.11 3.9E-06 51.8 3.1 22 192-213 33-54 (262)
455 1ji0_A ABC transporter; ATP bi 90.9 0.12 4E-06 51.0 3.1 22 192-213 33-54 (240)
456 4g1u_C Hemin import ATP-bindin 90.9 0.12 3.9E-06 51.8 3.1 22 192-213 38-59 (266)
457 1yrb_A ATP(GTP)binding protein 90.9 0.13 4.5E-06 51.4 3.6 26 189-214 12-37 (262)
458 2fz4_A DNA repair protein RAD2 90.8 1.4 4.7E-05 43.1 10.9 101 194-308 111-227 (237)
459 1sgw_A Putative ABC transporte 90.8 0.1 3.5E-06 50.2 2.5 22 192-213 36-57 (214)
460 3vr4_D V-type sodium ATPase su 90.8 0.32 1.1E-05 51.8 6.5 85 193-279 153-257 (465)
461 1mv5_A LMRA, multidrug resista 90.8 0.13 4.3E-06 50.8 3.3 22 192-213 29-50 (243)
462 2qmh_A HPR kinase/phosphorylas 90.8 0.12 4.2E-06 48.3 2.9 23 192-214 35-57 (205)
463 1g6h_A High-affinity branched- 90.8 0.12 4.1E-06 51.4 3.1 22 192-213 34-55 (257)
464 2olj_A Amino acid ABC transpor 90.7 0.12 4.2E-06 51.5 3.1 22 192-213 51-72 (263)
465 1svm_A Large T antigen; AAA+ f 90.7 0.21 7.2E-06 52.5 5.0 24 190-213 168-191 (377)
466 2wji_A Ferrous iron transport 90.7 0.16 5.4E-06 46.5 3.7 23 192-214 4-26 (165)
467 1w36_D RECD, exodeoxyribonucle 90.7 0.7 2.4E-05 52.3 9.7 23 192-214 165-187 (608)
468 2d2e_A SUFC protein; ABC-ATPas 90.7 0.13 4.4E-06 51.0 3.2 22 192-213 30-51 (250)
469 2ff7_A Alpha-hemolysin translo 90.7 0.13 4.3E-06 50.9 3.1 22 192-213 36-57 (247)
470 1u0j_A DNA replication protein 90.7 0.21 7.3E-06 49.3 4.7 37 173-213 90-126 (267)
471 2vp4_A Deoxynucleoside kinase; 90.6 0.12 4.2E-06 50.5 3.0 25 189-213 18-42 (230)
472 1vpl_A ABC transporter, ATP-bi 90.6 0.13 4.4E-06 51.1 3.1 22 192-213 42-63 (256)
473 2qe7_A ATP synthase subunit al 90.6 0.32 1.1E-05 52.4 6.3 95 176-279 152-263 (502)
474 3qf4_A ABC transporter, ATP-bi 90.6 0.81 2.8E-05 51.6 10.1 22 192-213 370-391 (587)
475 2r8r_A Sensor protein; KDPD, P 90.6 0.29 1E-05 46.9 5.4 105 192-310 7-127 (228)
476 2ocp_A DGK, deoxyguanosine kin 90.5 0.13 4.3E-06 50.8 3.1 24 191-214 2-25 (241)
477 2zu0_C Probable ATP-dependent 90.5 0.13 4.6E-06 51.4 3.2 22 192-213 47-68 (267)
478 2zej_A Dardarin, leucine-rich 90.5 0.13 4.5E-06 48.1 3.0 22 193-214 4-25 (184)
479 2r9v_A ATP synthase subunit al 90.5 0.34 1.2E-05 52.2 6.4 84 192-279 176-276 (515)
480 2qi9_C Vitamin B12 import ATP- 90.4 0.13 4.6E-06 50.7 3.1 22 192-213 27-48 (249)
481 4tmk_A Protein (thymidylate ki 90.4 0.34 1.2E-05 46.4 5.9 52 192-244 4-55 (213)
482 2v9p_A Replication protein E1; 90.4 0.14 4.7E-06 52.1 3.2 24 191-214 126-149 (305)
483 2ghi_A Transport protein; mult 90.4 0.14 4.7E-06 51.1 3.1 22 192-213 47-68 (260)
484 2eyu_A Twitching motility prot 90.3 0.15 5.1E-06 50.8 3.4 113 191-314 25-137 (261)
485 4hlc_A DTMP kinase, thymidylat 90.3 0.41 1.4E-05 45.6 6.3 24 192-215 3-26 (205)
486 3v9p_A DTMP kinase, thymidylat 90.3 0.28 9.5E-06 47.5 5.2 25 191-215 25-49 (227)
487 3cmu_A Protein RECA, recombina 90.3 0.5 1.7E-05 60.0 8.6 85 190-281 382-472 (2050)
488 2ixe_A Antigen peptide transpo 90.3 0.14 4.8E-06 51.4 3.1 22 192-213 46-67 (271)
489 2nq2_C Hypothetical ABC transp 90.2 0.14 4.9E-06 50.7 3.1 22 192-213 32-53 (253)
490 3gqb_B V-type ATP synthase bet 90.2 0.25 8.4E-06 52.6 5.0 88 192-279 148-260 (464)
491 1oix_A RAS-related protein RAB 90.2 0.16 5.6E-06 47.8 3.4 24 191-214 29-52 (191)
492 1nlf_A Regulatory protein REPA 90.2 0.13 4.4E-06 52.0 2.8 23 191-213 30-52 (279)
493 2yz2_A Putative ABC transporte 90.2 0.15 5E-06 51.1 3.1 22 192-213 34-55 (266)
494 2ihy_A ABC transporter, ATP-bi 90.1 0.15 5.1E-06 51.4 3.1 22 192-213 48-69 (279)
495 1fx0_A ATP synthase alpha chai 89.9 0.33 1.1E-05 52.4 5.7 82 192-279 164-264 (507)
496 3f9v_A Minichromosome maintena 89.9 0.11 3.6E-06 58.8 2.0 51 164-214 295-350 (595)
497 1p5z_B DCK, deoxycytidine kina 89.8 0.12 4.1E-06 51.7 2.2 25 190-214 23-47 (263)
498 2ck3_A ATP synthase subunit al 89.8 0.67 2.3E-05 50.1 8.0 99 176-279 152-271 (510)
499 2wjg_A FEOB, ferrous iron tran 89.7 0.26 8.8E-06 46.1 4.4 24 191-214 7-30 (188)
500 2f9l_A RAB11B, member RAS onco 89.7 0.2 7E-06 47.5 3.7 24 191-214 5-28 (199)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-46 Score=426.39 Aligned_cols=315 Identities=17% Similarity=0.261 Sum_probs=251.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc--chhhhccCCeeEEEEecCcc--cHHHHHHHH
Q 036168 167 IGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN--DQSVQEHFKLKIWICVSEDF--EQRQIMTKI 242 (846)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 242 (846)
|||++++++|.++|....+ ...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 5999999999999976421 4579999999999999999999997 56788999999999999885 789999999
Q ss_pred HHHhcCCCC-------CCCCHHHHHHHHHHHhcCc-eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 243 IKSITGQNP-------GDLDTDQLRRILRDRLNGE-IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 243 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
+.+++.... ...+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999975421 2235567789999999996 9999999999854323332 16999999999999988
Q ss_pred HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHHH--H
Q 036168 315 IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEYV--R 392 (846)
Q Consensus 315 ~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~--~ 392 (846)
.++.. ...|++++|+.++||+||.+.++.... .+...+++++|+++|+|+||||+++|+.++.+ . |+.+ .
T Consensus 280 ~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~~~l 351 (549)
T 2a5y_B 280 AASQT--CEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKMAQL 351 (549)
T ss_dssp GCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHHHHH
T ss_pred HcCCC--CeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHHHHh
Confidence 76532 237999999999999999999876432 36778899999999999999999999999764 2 4433 2
Q ss_pred hhhhccccccCCCchHHHHHhHhcCChhhHHHHh-----------HhccCCCCcccChhHHHHHHHHc--CCCCCCCCCC
Q 036168 393 DNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFA-----------YCSIFPKDYDFTSVLLIRFWMAH--GLLQSPNENE 459 (846)
Q Consensus 393 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~~~~~~li~~w~a~--g~i~~~~~~~ 459 (846)
....+.. ....+..++.+||+.||++.|.||+ |||+||+++.++ ++.|+|+ ||+.......
T Consensus 352 ~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 352 NNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 2222211 3567889999999999999999999 999999999998 8899999 9998764456
Q ss_pred CHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHHHhhcccc
Q 036168 460 EPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQLVAKGEF 513 (846)
Q Consensus 460 ~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~~~~~~e~ 513 (846)
..+++++ |+++|+++|||+....+ ...+|+|||++|+||+.++..++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~------~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM------PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS------SSCEEECCHHHHHHHHTTSCTHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC------CceEEEeChHHHHHHHHHHHHHH
Confidence 6778887 99999999999976532 34579999999999999887765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-37 Score=355.28 Aligned_cols=286 Identities=20% Similarity=0.255 Sum_probs=224.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCe-eEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKL-KIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 242 (846)
...|||++++++|.++|... ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++..+...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 34599999999999999753 23689999999999999999999987778889986 8999999998888888887
Q ss_pred HHHhcC---C---CCCC-----CCHHHHHHHHHHHh---cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC
Q 036168 243 IKSITG---Q---NPGD-----LDTDQLRRILRDRL---NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 243 ~~~l~~---~---~~~~-----~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR 308 (846)
+..+.. . .... .+.+.+...+++.+ .++|+||||||||+ .+.|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEecc
Confidence 775421 1 0000 12345566677655 68999999999987 3455543 2 6899999999
Q ss_pred ChHHHHHhCCCCCCCcEecC------CCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCC
Q 036168 309 SNKVASIMGTMRGTAGYKLE------GLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGS 382 (846)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~l~------~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 382 (846)
++.++..+.... .+.++ +|+.+||++||++.. ... . .++..+| |+|+||||+++|+.|+.+
T Consensus 274 d~~Va~~l~g~~---vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~---~---eeL~~eI---CgGLPLALkLaGs~Lr~k 340 (1221)
T 1vt4_I 274 FKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLKYL-DCR---P---QDLPREV---LTTNPRRLSIIAESIRDG 340 (1221)
T ss_dssp CSHHHHHHHHHS---SCEEEECSSSSCCCHHHHHHHHHHHH-CCC---T---TTHHHHH---CCCCHHHHHHHHHHHHHS
T ss_pred ChHHHHhcCCCe---EEEecCccccCCcCHHHHHHHHHHHc-CCC---H---HHHHHHH---hCCCHHHHHHHHHHHhCC
Confidence 999886443222 45666 999999999999984 221 1 1233333 999999999999999876
Q ss_pred C-CHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhh-HHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCCCC
Q 036168 383 T-DEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHL-KQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNENEE 460 (846)
Q Consensus 383 ~-~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~~~ 460 (846)
. ....|+.. ....+..++++||+.||++. |.||++||+||+++.|+...++.+|+++|
T Consensus 341 ~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------- 400 (1221)
T 1vt4_I 341 LATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------- 400 (1221)
T ss_dssp CSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------
T ss_pred CCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------
Confidence 4 66778653 23568899999999999999 99999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHH
Q 036168 461 PENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLA 505 (846)
Q Consensus 461 ~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~ 505 (846)
++.++.++++|+++|||+... ...+|+|||++++++
T Consensus 401 -eedAe~~L~eLvdRSLLq~d~--------~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 401 -KSDVMVVVNKLHKYSLVEKQP--------KESTISIPSIYLELK 436 (1221)
T ss_dssp -SHHHHHHHHHHHTSSSSSBCS--------SSSEEBCCCHHHHHH
T ss_pred -HHHHHHHHHHHHhhCCEEEeC--------CCCEEEehHHHHHHh
Confidence 134788999999999999742 124799999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-36 Score=383.39 Aligned_cols=316 Identities=22% Similarity=0.299 Sum_probs=246.3
Q ss_pred ccCccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh-hccC-CeeEEEEecCccc-
Q 036168 158 HSFVLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV-QEHF-KLKIWICVSEDFE- 234 (846)
Q Consensus 158 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~- 234 (846)
..|..+..||||++++++|.++|.... ..+++|+|+||||+||||||+++|++.+. ..+| +.++|+++++...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 344566789999999999999997543 45789999999999999999999997543 4445 5677999988543
Q ss_pred -HHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHhcCc--eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeC
Q 036168 235 -QRQIMTKIIKSITGQN----PGDLDTDQLRRILRDRLNGE--IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTT 307 (846)
Q Consensus 235 -~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt 307 (846)
....+..++..+.... ....+.+.+...++..+.++ |+||||||||+. .. +...++||+|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~-------~~~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WV-------LKAFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HH-------HTTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HH-------HHhhcCCCEEEEEc
Confidence 3445666777765432 23456788889999999877 999999999864 22 22336799999999
Q ss_pred CChHHHHHhCCCCCCCcEecCC-CChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHH
Q 036168 308 RSNKVASIMGTMRGTAGYKLEG-LPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEH 386 (846)
Q Consensus 308 R~~~~~~~~~~~~~~~~~~l~~-l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 386 (846)
|++.++..+.. ....+.+.+ |+.++|++||...++... +...+.+++|+++|+|+||||+++|++|+.++ .
T Consensus 265 R~~~~~~~~~~--~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~ 336 (1249)
T 3sfz_A 265 RDKSVTDSVMG--PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (1249)
T ss_dssp SSTTTTTTCCS--CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--S
T ss_pred CCHHHHHhhcC--CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--h
Confidence 99988754322 234789995 999999999999884332 33446789999999999999999999998654 3
Q ss_pred HHHHHHhhhhccc----cc----cCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCC
Q 036168 387 YWEYVRDNEIWKL----EQ----KKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNEN 458 (846)
Q Consensus 387 ~w~~~~~~~~~~~----~~----~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~ 458 (846)
.|+.++....... .. ....+..++.+||+.||+++|.||+|||+||+++.|+...++.+|.++
T Consensus 337 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--------- 407 (1249)
T 3sfz_A 337 RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------- 407 (1249)
T ss_dssp CHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC---------
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC---------
Confidence 5666554432211 11 113588899999999999999999999999999999999999999543
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHHHhhccc
Q 036168 459 EEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQLVAKGE 512 (846)
Q Consensus 459 ~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~~~~~~e 512 (846)
++.++.++++|+++|||+...+ +...+|+||+++|++++....++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~~------~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNRN------GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEES------SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEecC------CCceEEEecHHHHHHHHhhhhHH
Confidence 4668899999999999986543 34567999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=326.54 Aligned_cols=308 Identities=23% Similarity=0.328 Sum_probs=232.8
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhh-hccC-CeeEEEEecCcccHHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSV-QEHF-KLKIWICVSEDFEQRQI 238 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~ 238 (846)
..+..||||++++++|.++|.... ...++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 456779999999999999997532 34789999999999999999999997655 7889 57999999776 33333
Q ss_pred HHHH---HHHhcCC----CCCCCCHHHHHHHHHHHhcC--ceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC
Q 036168 239 MTKI---IKSITGQ----NPGDLDTDQLRRILRDRLNG--EIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS 309 (846)
Q Consensus 239 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~ 309 (846)
+..+ +..+... .....+.+.+...+...+.+ +++||||||+|+. +.+. ..++|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~----~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK----AFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH----TTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH----HhcCCCeEEEECCC
Confidence 3333 3444321 22345667778888888865 7899999999863 2222 23568999999999
Q ss_pred hHHHHHhCCCCCCCcEec---CCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHH
Q 036168 310 NKVASIMGTMRGTAGYKL---EGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEH 386 (846)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l---~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 386 (846)
+.++..+.. ..+.+ ++|+.+++++||...++... +...+.+.+|+++|+|+||||..+|+.++.+. .
T Consensus 267 ~~~~~~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~ 336 (591)
T 1z6t_A 267 KSVTDSVMG----PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (591)
T ss_dssp GGGGTTCCS----CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--T
T ss_pred cHHHHhcCC----CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--h
Confidence 987665431 24554 58999999999999985421 22235678999999999999999999998653 3
Q ss_pred HHHHHHhhhhccc----c----ccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCCCCC
Q 036168 387 YWEYVRDNEIWKL----E----QKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSPNEN 458 (846)
Q Consensus 387 ~w~~~~~~~~~~~----~----~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~~~~ 458 (846)
.|+.+........ . .....+..++..||+.||++.|.||+++|+||+++.|+...++..|.++
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 5776654332211 1 1123578899999999999999999999999999999999999999432
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHHHhhc
Q 036168 459 EEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQLVAK 510 (846)
Q Consensus 459 ~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~~~~~ 510 (846)
.+.+..++++|+++|||+...+ +...+|+||++++++++....
T Consensus 408 ---~~~~~~~l~~L~~~~Ll~~~~~------~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLLFCDRN------GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSSEEEEE------TTEEEEECCHHHHHHHHHHTG
T ss_pred ---HHHHHHHHHHHHhCcCeEEecC------CCccEEEEcHHHHHHHHhhhh
Confidence 2456789999999999985443 335689999999999988743
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.4e-23 Score=223.21 Aligned_cols=222 Identities=24% Similarity=0.318 Sum_probs=134.7
Q ss_pred CCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 576 SQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
.+.++.|+|++|.+..+|..++.+++|++|+|++|. +..+|..++.+++|++|++++|. +..+|..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 355566666666666555555556666666666554 33555556666666666666554 2355555666666666666
Q ss_pred cccccc-cccccCCC---------CCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEe
Q 036168 656 STKQKS-LLESGIGC---------LSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLM 725 (846)
Q Consensus 656 ~~~~~~-~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~ 725 (846)
++|... .+|..+.. +++|++|++++|... .+|..++.+++|+.|++++|. +..+|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEE
Confidence 654332 44443332 566666666665332 555556666666666666653 334555556666666666
Q ss_pred cccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCC
Q 036168 726 LEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEA 805 (846)
Q Consensus 726 l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 805 (846)
+++|..... .+. ......+|+.|++++|+....+|.++ ..+++|++|+|++|+.++.+|..+.++++
T Consensus 236 Ls~n~~~~~-----~p~------~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 236 LRGCTALRN-----YPP------IFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CTTCTTCCB-----CCC------CTTCCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CcCCcchhh-----hHH------HhcCCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 666543220 000 01112255666666656666777777 78899999999999999999999999999
Q ss_pred cceeeccCC
Q 036168 806 LETLAIGGC 814 (846)
Q Consensus 806 L~~L~l~~c 814 (846)
|+.+++..+
T Consensus 303 L~~l~l~~~ 311 (328)
T 4fcg_A 303 NCIILVPPH 311 (328)
T ss_dssp TCEEECCGG
T ss_pred ceEEeCCHH
Confidence 999998755
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.6e-23 Score=249.59 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=198.8
Q ss_pred CCceeEEEeCCCChh-hhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 576 SQFLRVIDLSDSAIE-VLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
+++|++|++++|.+. .+|..++++++|++|+|++|.....+|..++.+++|++|++++|.....+|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 677888888888887 6778888889999999998876668888888899999999998887778888888899999999
Q ss_pred ecccccc-cccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccc
Q 036168 655 VSTKQKS-LLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLT 733 (846)
Q Consensus 655 l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 733 (846)
+++|.+. .+|..+..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|....
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9998888 677788888999999999888777888888899999999999988777888888889999999998885321
Q ss_pred hhhhhhccccc-----------------------------------------------------------c-cccCCCCC
Q 036168 734 LNLKIEMEGEE-----------------------------------------------------------S-HCDRNKTR 753 (846)
Q Consensus 734 ~~~~~~~~~~~-----------------------------------------------------------~-~~~~~l~~ 753 (846)
. +........ . .+......
T Consensus 553 ~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 553 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp B-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred c-CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 0 000000000 0 00000011
Q ss_pred cccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCccc
Q 036168 754 LHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIA 833 (846)
Q Consensus 754 l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~ 833 (846)
.+|+.++++++.-...+|..+ +.+++|+.|+|++|...+.+|..++.+++|+.|+|++|.- .|.....+.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l--------~g~ip~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL--------DGRIPQAMS 701 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--------EECCCGGGG
T ss_pred ccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc--------cCcCChHHh
Confidence 257778887765555778777 7888999999999988888898888899999999998852 233444567
Q ss_pred ccceeeeCCCCCC
Q 036168 834 HIPQVCLEDESDN 846 (846)
Q Consensus 834 ~i~~l~~~~~~~n 846 (846)
+++.++.+|+++|
T Consensus 702 ~l~~L~~L~ls~N 714 (768)
T 3rgz_A 702 ALTMLTEIDLSNN 714 (768)
T ss_dssp GCCCCSEEECCSS
T ss_pred CCCCCCEEECcCC
Confidence 7777777777776
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.9e-23 Score=246.39 Aligned_cols=297 Identities=18% Similarity=0.164 Sum_probs=190.8
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChh-hhhhhhcccCccC
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIE-VLSREIGNLKHLR 603 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~l~~L~ 603 (846)
..++.+.+..+... ...+..+..+++|+.|.+..+... ...+..+.++++|+.|++++|.+. .+|..+..+++|+
T Consensus 394 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 394 NTLQELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLS---GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CCCCEEECCSSEEE-EECCGGGGGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCccEEECCCCccc-cccCHHHhcCCCCCEEECcCCccc---CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 35666666555432 234556677777888777644321 233455677778888888887776 6677777788888
Q ss_pred eeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc-cccccCCCCCCCCEecccccc
Q 036168 604 YLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMISDCE 682 (846)
Q Consensus 604 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 682 (846)
+|++++|.....+|..+..+++|++|++++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8888877766677777778888888888877766677777777888888888888776 667777778888888877765
Q ss_pred Ccccchhh----------------------------------------------------------------------cc
Q 036168 683 NLEYLFDD----------------------------------------------------------------------ID 692 (846)
Q Consensus 683 ~~~~~~~~----------------------------------------------------------------------l~ 692 (846)
....+|.. ++
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 54333332 33
Q ss_pred CCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCch
Q 036168 693 QLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ 772 (846)
Q Consensus 693 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~ 772 (846)
.+++|+.|++++|...+.+|..++++++|+.|+|++|... +..+... . ...+|+.|+++.+.-...+|.
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-----g~ip~~l-~-----~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-----GSIPDEV-G-----DLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-----SCCCGGG-G-----GCTTCCEEECCSSCCEECCCG
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-----CCCChHH-h-----CCCCCCEEECCCCcccCcCCh
Confidence 4566777888877766677777788888888888877422 1111110 0 112566666666544446777
Q ss_pred hhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccc----cCCCCCCCCCCcccccceee
Q 036168 773 WLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSE----RCKPQTGEDWPKIAHIPQVC 839 (846)
Q Consensus 773 ~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~i~~i~~l~ 839 (846)
.+ ..+++|++|+|++|+..+.+|. .+.+.++..+.+.+||.++. .|....+++|++++|++.++
T Consensus 699 ~l--~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 699 AM--SALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GG--GGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred HH--hCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 66 6777888888888877777775 35566666777777776653 57788999999999998764
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.2e-23 Score=220.53 Aligned_cols=233 Identities=16% Similarity=0.141 Sum_probs=169.3
Q ss_pred HhhccCCceeEEEeCC-CChh-hhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccC
Q 036168 571 SCISKSQFLRVIDLSD-SAIE-VLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLV 648 (846)
Q Consensus 571 ~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 648 (846)
..+.++++|++|+|++ |.+. .+|..++++++|++|+|++|.....+|..+..+++|++|++++|.....+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 4566777777777774 6665 6677777778888888877765557777777788888888877765556777777778
Q ss_pred CCcEEEecccccc-cccccCCCCC-CCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEec
Q 036168 649 NLRMFVVSTKQKS-LLESGIGCLS-SLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLML 726 (846)
Q Consensus 649 ~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l 726 (846)
+|++|++++|.++ .+|..+..++ +|++|++++|.....+|..+..++ |+.|++++|......|..+..+++|+.|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 8888888877777 6666777776 778888877766656677777776 888888777655566667777788888888
Q ss_pred ccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCc
Q 036168 727 EDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEAL 806 (846)
Q Consensus 727 ~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 806 (846)
++|.... ..+. .....+|+.|+++++.-...+|.++ ..+++|++|+|++|+..+.+|.. ..+++|
T Consensus 229 ~~N~l~~-----~~~~-------~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 229 AKNSLAF-----DLGK-------VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp CSSEECC-----BGGG-------CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred CCCceee-----ecCc-------ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCCCC-cccccc
Confidence 7774211 0000 0112366777776654333677777 78899999999999888889875 889999
Q ss_pred ceeeccCCccccc
Q 036168 807 ETLAIGGCPALSE 819 (846)
Q Consensus 807 ~~L~l~~c~~l~~ 819 (846)
+.|++++||.+..
T Consensus 294 ~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 294 DVSAYANNKCLCG 306 (313)
T ss_dssp CGGGTCSSSEEES
T ss_pred ChHHhcCCCCccC
Confidence 9999999997764
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.1e-22 Score=228.15 Aligned_cols=299 Identities=14% Similarity=0.060 Sum_probs=203.9
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKH 601 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~ 601 (846)
++..++++.+..+.... ..+..+.++++|+.|.+..+... ..+.+..|.++++|++|+|++|.+..+ |..|+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCc-CChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 56789999998776542 23567888999999999855431 233345688899999999999999865 778999999
Q ss_pred cCeeeccCCCcccccchh--hhcCCCCcEEecCCcCCCcccccc-ccccCCCcEEEecccccccc-cccCC---------
Q 036168 602 LRYLDLSGHDKIKKLPNS--ICELHSLQTVCLGGCRELEELPKD-IRYLVNLRMFVVSTKQKSLL-ESGIG--------- 668 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~--------- 668 (846)
|++|+|++|......|.. +..+++|++|++++|......|.. +..+++|++|++++|.+... +..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999998765555554 888999999999998866655765 78999999999999987743 22222
Q ss_pred -------------------------CCCCCCEeccccccCcccchhhcc-------------------------------
Q 036168 669 -------------------------CLSSLRFLMISDCENLEYLFDDID------------------------------- 692 (846)
Q Consensus 669 -------------------------~l~~L~~L~l~~~~~~~~~~~~l~------------------------------- 692 (846)
.+++|++|++++|......|..+.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 336788888888765443333221
Q ss_pred --------CCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCC
Q 036168 693 --------QLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGL 764 (846)
Q Consensus 693 --------~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~ 764 (846)
..++|+.|++++|......|..+..+++|++|++++|..... ... ......+|+.|+++++
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~-----~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI------DDN-----AFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE------CTT-----TTTTCTTCCEEECCSS
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc------Chh-----HhcCcccCCEEECCCC
Confidence 125677777777766666677778888888888888743220 000 0011236777777765
Q ss_pred CCCCCC-chhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCC
Q 036168 765 PPLLEL-PQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDE 843 (846)
Q Consensus 765 ~~l~~l-~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~ 843 (846)
. +..+ |..+ ..+++|++|+|++|......|..+..+++|++|++++|. ++... ...+.++++++.+++
T Consensus 334 ~-l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 334 F-LGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVP-------DGIFDRLTSLQKIWL 402 (455)
T ss_dssp C-CCEECGGGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEEC
T ss_pred c-cCCcChhHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCC-------HhHhccCCcccEEEc
Confidence 3 3333 4445 677888888888886666667777788888888888874 22211 112345556666666
Q ss_pred CCC
Q 036168 844 SDN 846 (846)
Q Consensus 844 ~~n 846 (846)
++|
T Consensus 403 ~~N 405 (455)
T 3v47_A 403 HTN 405 (455)
T ss_dssp CSS
T ss_pred cCC
Confidence 554
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=227.99 Aligned_cols=276 Identities=16% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhh-hcccC
Q 036168 522 SIPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSRE-IGNLK 600 (846)
Q Consensus 522 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~ 600 (846)
.++..++.+.+..+.... ..+..+.++++|+.|.+..+... ...+..|.++++|++|+|++|.+..+|.. |.+++
T Consensus 29 ~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 355678888887766542 12356778888888888755432 23345678888888888888888877654 67888
Q ss_pred ccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccc-cCCCCCCCCEeccc
Q 036168 601 HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLES-GIGCLSSLRFLMIS 679 (846)
Q Consensus 601 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 679 (846)
+|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|++++|.+..++. .+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 88888888887666667778888888888888877655566778888888888888888775543 46777888888888
Q ss_pred cccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceE
Q 036168 680 DCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKL 759 (846)
Q Consensus 680 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l 759 (846)
+|......+..+..+++|+.|++++|..+..+|..+....+|++|++++|..-... .... ....+|+.|
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~-----~~l~~L~~L 253 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------YLAV-----RHLVYLRFL 253 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------HHHH-----TTCTTCCEE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------HHHh-----cCccccCee
Confidence 77665555556777777888888777766666666555567777777766322100 0000 001234444
Q ss_pred EccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCC
Q 036168 760 FVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGC 814 (846)
Q Consensus 760 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c 814 (846)
+++++. +..++...+ ..+++|+.|+|++|......|..+..+++|+.|+|++|
T Consensus 254 ~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 254 NLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp ECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred ECCCCc-CCccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 444432 222222111 34455555555555444444444555555555555554
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=9.2e-23 Score=216.97 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=186.3
Q ss_pred cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEecc
Q 036168 599 LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMI 678 (846)
Q Consensus 599 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 678 (846)
..+++.|+|++|. +..+|..++.+++|++|++++|... .+|..+..+++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 5899999999876 6689999999999999999998754 8999999999999999999999999999999999999999
Q ss_pred ccccCcccchhhccC---------CCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccC
Q 036168 679 SDCENLEYLFDDIDQ---------LCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDR 749 (846)
Q Consensus 679 ~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 749 (846)
++|+....+|..+.. +++|+.|++++|. +..+|..+..+++|++|++++|.... .+. .
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~------~ 224 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA------LGP------A 224 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC------CCG------G
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc------Cch------h
Confidence 999988888877654 9999999999995 55899999999999999999985322 111 0
Q ss_pred CCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCC
Q 036168 750 NKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDW 829 (846)
Q Consensus 750 ~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 829 (846)
.....+|+.|+++++.....+|.++ ..+++|++|+|++|+..+.+|..+..+++|+.|+|++|+.+... .
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i--------P 294 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL--------P 294 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC--------C
T ss_pred hccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc--------c
Confidence 1112379999999988888888888 88999999999999999999999999999999999999866533 2
Q ss_pred CcccccceeeeCCCC
Q 036168 830 PKIAHIPQVCLEDES 844 (846)
Q Consensus 830 ~~i~~i~~l~~~~~~ 844 (846)
..+.++++++.+++.
T Consensus 295 ~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 295 SLIAQLPANCIILVP 309 (328)
T ss_dssp GGGGGSCTTCEEECC
T ss_pred HHHhhccCceEEeCC
Confidence 235555655555443
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.8e-22 Score=234.96 Aligned_cols=306 Identities=12% Similarity=0.071 Sum_probs=209.6
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCC-CcchhHHHHHhhccC------CceeEEEeCCCChhhhhh--h
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPIND-EKTNQSILTSCISKS------QFLRVIDLSDSAIEVLSR--E 595 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~-~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~l~~--~ 595 (846)
..++++.+..+... ..++..+.++++|+.|.+..+. . ....++..+.++ ++|++|++++|.+..+|. .
T Consensus 249 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 249 KDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp TTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred CCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCC--ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 46788888877544 3466778899999999998554 2 121344444444 899999999999999988 8
Q ss_pred hcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCC-CcEEEecccccccccccCCCCC--C
Q 036168 596 IGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVN-LRMFVVSTKQKSLLESGIGCLS--S 672 (846)
Q Consensus 596 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~--~ 672 (846)
++++++|++|++++|...+.+| .++.+++|++|++++|. +..+|..+..+++ |++|++++|.++.+|..+..++ +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 9999999999999887555888 88999999999999987 4588888999999 9999999999998888777654 8
Q ss_pred CCEeccccccCcccchhhcc-------CCCCcCEEEeecCCCCcccccc-ccCCCCcCeEecccCcccchhhhhhccccc
Q 036168 673 LRFLMISDCENLEYLFDDID-------QLCVLRTIFIADCPRLISLPPA-VKYLSSLETLMLEDCESLTLNLKIEMEGEE 744 (846)
Q Consensus 673 L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 744 (846)
|++|++++|......|..+. .+++|+.|++++|. +..+|.. +..+++|++|++++|.... .+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~------i~~~~ 476 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTE------IPKNS 476 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSB------CCSSS
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCC------cCHHH
Confidence 99999999887777777777 77889999999885 4466665 4458889999998885321 11111
Q ss_pred ccccC--CCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCC
Q 036168 745 SHCDR--NKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCK 822 (846)
Q Consensus 745 ~~~~~--~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~ 822 (846)
..... .....+|+.|+++++ .+..+|..+....+++|+.|+|++|...+ +|..+..+++|+.|+|++|+.+..-
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N-- 552 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN-- 552 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC--
T ss_pred hccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC--
Confidence 10000 000115666666664 34466665511266777777777775444 6666667777777777655422211
Q ss_pred CCCCCCCCcccccceeeeCCCCCC
Q 036168 823 PQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 823 ~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
...+.....+.++++|+.+++++|
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cccccChHHHhcCCCCCEEECCCC
Confidence 011222223445555555555544
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=4.2e-23 Score=240.27 Aligned_cols=262 Identities=13% Similarity=0.134 Sum_probs=179.5
Q ss_pred HHHhhccCCceeEEEeCCCChhh------------------hhhhhc--ccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 569 LTSCISKSQFLRVIDLSDSAIEV------------------LSREIG--NLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 569 ~~~~~~~~~~L~~L~L~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
++..+.++++|++|+|++|.+.. +|..++ ++++|++|+|++|...+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 44568889999999999999887 888888 9999999999988888888988999999999
Q ss_pred EecCCcC-CCc-ccccccccc------CCCcEEEecccccccccc--cCCCCCCCCEeccccccCcccchhhccCCCCcC
Q 036168 629 VCLGGCR-ELE-ELPKDIRYL------VNLRMFVVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLR 698 (846)
Q Consensus 629 L~l~~~~-~~~-~~p~~~~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 698 (846)
|++++|. ... .+|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.....+| .++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999987 444 688888776 899999999998888887 78888999999998877665777 777888888
Q ss_pred EEEeecCCCCccccccccCCCC-cCeEecccCcccchhhhhhcc----------------------cccc-cccCCCCCc
Q 036168 699 TIFIADCPRLISLPPAVKYLSS-LETLMLEDCESLTLNLKIEME----------------------GEES-HCDRNKTRL 754 (846)
Q Consensus 699 ~L~l~~~~~~~~l~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~----------------------~~~~-~~~~~l~~l 754 (846)
.|++++|. +..+|..+..+++ |++|++++|..... ..... .... .........
T Consensus 357 ~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~l--p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 357 SLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYI--PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSC--CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred EEECCCCc-cccccHhhhhhcccCcEEEccCCcCccc--chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 88888774 4477777777877 88888887752210 00000 0000 000001222
Q ss_pred ccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCC--------CCCcceeeccCCccccccCCCCCC
Q 036168 755 HLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRN--------LEALETLAIGGCPALSERCKPQTG 826 (846)
Q Consensus 755 ~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~--------l~~L~~L~l~~c~~l~~~~~~~~~ 826 (846)
+|+.|+++++ .+..+|..++ ..+++|++|+|++|... .+|..+.. +++|+.|++++|. ++..
T Consensus 434 ~L~~L~Ls~N-~l~~lp~~~~-~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l------ 503 (636)
T 4eco_A 434 NVSSINLSNN-QISKFPKELF-STGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL------ 503 (636)
T ss_dssp CEEEEECCSS-CCCSCCTHHH-HTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBC------
T ss_pred CCCEEECcCC-ccCcCCHHHH-ccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCcc------
Confidence 5666666664 3345555432 34677777777777544 55543322 2277777777764 2211
Q ss_pred CCCCccc--ccceeeeCCCCCC
Q 036168 827 EDWPKIA--HIPQVCLEDESDN 846 (846)
Q Consensus 827 ~~~~~i~--~i~~l~~~~~~~n 846 (846)
...+. ++++|+.+++++|
T Consensus 504 --p~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 504 --SDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp --CGGGSTTTCTTCCEEECCSS
T ss_pred --ChhhhhccCCCcCEEECCCC
Confidence 11232 5667777777665
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=7.1e-22 Score=233.46 Aligned_cols=304 Identities=12% Similarity=0.055 Sum_probs=177.4
Q ss_pred ceeEEEEEcCCCCcc----------------hhhhhhc--ccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCC
Q 036168 526 RVRHLSFVGANTSIN----------------DFSSLLS--DSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDS 587 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~----------------~~~~~~~--~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 587 (846)
.++.+.+..+..... .+|..+. ++++|+.|.+..+... ..++..|.++++|+.|+|++|
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~---~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM---TQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC---CSCCGGGGGCSSCCEEECTTC
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC---ccChHHHhCCCCCCEEECcCC
Confidence 566677766654421 1455544 6777777777644321 123345667777777777777
Q ss_pred C-hh--hhhhhhcccC-------ccCeeeccCCCcccccch--hhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 588 A-IE--VLSREIGNLK-------HLRYLDLSGHDKIKKLPN--SICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 588 ~-~~--~l~~~~~~l~-------~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
. +. .+|..++.++ +|++|+|++|... .+|. .++++++|++|++++|... .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 6 55 3666555554 7777777766533 6666 6777777777777776633 666 6677777777777
Q ss_pred cccccccccccCCCCCC-CCEeccccccCcccchhhccCCCC--cCEEEeecCCCCc-----------------------
Q 036168 656 STKQKSLLESGIGCLSS-LRFLMISDCENLEYLFDDIDQLCV--LRTIFIADCPRLI----------------------- 709 (846)
Q Consensus 656 ~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~----------------------- 709 (846)
++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|....
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77777766666666766 777777766533 55555444432 5555555554332
Q ss_pred -----cccccc-cCCCCcCeEecccCcccchhhhhhcccccccccC--CCCCcccceEEccCCCCCCCCchhhhcCCCCc
Q 036168 710 -----SLPPAV-KYLSSLETLMLEDCESLTLNLKIEMEGEESHCDR--NKTRLHLRKLFVEGLPPLLELPQWLLQGSTKT 781 (846)
Q Consensus 710 -----~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~ 781 (846)
.+|..+ ..+++|+.|+|++|..-. ++........ .....+|+.|+++++ .+..+|..+....+++
T Consensus 682 ~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~------ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 682 YNEIQKFPTELFATGSPISTIILSNNLMTS------IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPY 754 (876)
T ss_dssp SSCCCSCCHHHHHTTCCCSEEECCSCCCSC------CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTT
T ss_pred CCcCCccCHHHHccCCCCCEEECCCCcCCc------cChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCC
Confidence 333332 244455555555442110 0110000000 000116888888875 4557777762127888
Q ss_pred cceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 782 LKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 782 L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
|+.|+|++|...+ +|..+..+++|+.|+|++|+.+... ...+.....+.++++|+.+++++|
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N--~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN--RILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC--BCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc--cccccChHHHhcCCCCCEEECCCC
Confidence 8888888886544 7877888888888888887633221 112233334666677777776665
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.9e-22 Score=213.28 Aligned_cols=246 Identities=18% Similarity=0.208 Sum_probs=201.0
Q ss_pred CceeEEEeCCCChh---hhhhhhcccCccCeeeccC-CCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 577 QFLRVIDLSDSAIE---VLSREIGNLKHLRYLDLSG-HDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 577 ~~L~~L~L~~~~~~---~l~~~~~~l~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
.+++.|+|++|.+. .+|..++++++|++|+|++ |.....+|..++++++|++|++++|.....+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 7767789999999999999999999876689999999999999
Q ss_pred EEecccccc-cccccCCCCCCCCEeccccccCcccchhhccCCC-CcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 653 FVVSTKQKS-LLESGIGCLSSLRFLMISDCENLEYLFDDIDQLC-VLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 653 L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|.....+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 7888899999999999999987778899999998 999999999976668888888887 9999999985
Q ss_pred ccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceee
Q 036168 731 SLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLA 810 (846)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 810 (846)
.... .... .....+|+.++++++.-...+| .+ ..+++|++|+|++|...+.+|..+..+++|+.|+
T Consensus 209 l~~~------~~~~-----~~~l~~L~~L~L~~N~l~~~~~-~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 209 LEGD------ASVL-----FGSDKNTQKIHLAKNSLAFDLG-KV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EEEC------CGGG-----CCTTSCCSEEECCSSEECCBGG-GC--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred ccCc------CCHH-----HhcCCCCCEEECCCCceeeecC-cc--cccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 3210 0011 1112367777777654332333 34 6789999999999988779999999999999999
Q ss_pred ccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 811 IGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 811 l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
+++|+--... +...++++++.+++++|
T Consensus 275 Ls~N~l~~~i---------p~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 275 VSFNNLCGEI---------PQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CCSSEEEEEC---------CCSTTGGGSCGGGTCSS
T ss_pred CcCCcccccC---------CCCccccccChHHhcCC
Confidence 9999633221 11246677777777766
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=220.74 Aligned_cols=249 Identities=18% Similarity=0.174 Sum_probs=201.8
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccc-hhhhcCCCCc
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQ 627 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~ 627 (846)
++++.|.+..+... .+.+..|.++++|++|+|++|.+..+ |..|.++++|++|+|++|. ++.+| ..|.++++|+
T Consensus 32 ~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCC
T ss_pred CCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCC
Confidence 57899998865543 33345788999999999999999866 7789999999999999886 55555 4578999999
Q ss_pred EEecCCcCCCccccccccccCCCcEEEecccccccc-cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 628 TVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
+|++++|......|..+..+++|++|++++|.+..+ +..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 999999987777788899999999999999998844 5578999999999999987665555678999999999999997
Q ss_pred CCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceee
Q 036168 707 RLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLI 786 (846)
Q Consensus 707 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~ 786 (846)
.....+..+..+++|+.|++++|..+... ........+|+.|+++++ .+..+|...+ ..+++|+.|+
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~ 254 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTM-----------TPNCLYGLNLTSLSITHC-NLTAVPYLAV-RHLVYLRFLN 254 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEE-----------CTTTTTTCCCSEEEEESS-CCCSCCHHHH-TTCTTCCEEE
T ss_pred CcEeChhhcccCcccceeeCCCCcccccc-----------CcccccCccccEEECcCC-cccccCHHHh-cCccccCeeE
Confidence 65555567899999999999998654311 111122347899999886 4567775332 7899999999
Q ss_pred cccccccccCCcCCCCCCCcceeeccCCc
Q 036168 787 IRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 787 L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
|++|......+..+..+++|+.|+|++|.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred CCCCcCCccChhhccccccCCEEECCCCc
Confidence 99998766666778999999999999985
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=4.9e-22 Score=234.87 Aligned_cols=261 Identities=16% Similarity=0.180 Sum_probs=190.1
Q ss_pred HHHhhccCCceeEEEeCCCChhh------------------hhhhhc--ccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 569 LTSCISKSQFLRVIDLSDSAIEV------------------LSREIG--NLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 569 ~~~~~~~~~~L~~L~L~~~~~~~------------------l~~~~~--~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
+|..|.++++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45568889999999999999887 888877 9999999999998888899999999999999
Q ss_pred EecCCcC-CCc-cccccccccC-------CCcEEEecccccccccc--cCCCCCCCCEeccccccCcccchhhccCCCCc
Q 036168 629 VCLGGCR-ELE-ELPKDIRYLV-------NLRMFVVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYLFDDIDQLCVL 697 (846)
Q Consensus 629 L~l~~~~-~~~-~~p~~~~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 697 (846)
|++++|. ... .+|..++.++ +|++|++++|.+..+|. .++.+++|++|++++|... .+| .++.+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999987 444 5887776665 99999999999988887 7899999999999987655 777 88889999
Q ss_pred CEEEeecCCCCccccccccCCCC-cCeEecccCcccchhhhhhcccc---------------------cccccCCCCCcc
Q 036168 698 RTIFIADCPRLISLPPAVKYLSS-LETLMLEDCESLTLNLKIEMEGE---------------------ESHCDRNKTRLH 755 (846)
Q Consensus 698 ~~L~l~~~~~~~~l~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~---------------------~~~~~~~l~~l~ 755 (846)
+.|++++|... .+|..+..+++ |+.|+|++|..-. +...+... ...........+
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 99999988644 88888888888 9999998885321 11000000 000001112236
Q ss_pred cceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCC--------CCCcceeeccCCccccccCCCCCCC
Q 036168 756 LRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRN--------LEALETLAIGGCPALSERCKPQTGE 827 (846)
Q Consensus 756 L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~--------l~~L~~L~l~~c~~l~~~~~~~~~~ 827 (846)
|+.|+++++. +..+|.+++ ..+++|+.|+|++|... .+|..+.. +++|+.|+|++|. +...
T Consensus 675 L~~L~Ls~N~-L~~lp~~~~-~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l------- 743 (876)
T 4ecn_A 675 ASTVTLSYNE-IQKFPTELF-ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL------- 743 (876)
T ss_dssp EEEEECCSSC-CCSCCHHHH-HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC-------
T ss_pred cCEEEccCCc-CCccCHHHH-ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccc-------
Confidence 7777777753 446776652 46788888888888544 66664433 2388888888884 3311
Q ss_pred CCCccc--ccceeeeCCCCCC
Q 036168 828 DWPKIA--HIPQVCLEDESDN 846 (846)
Q Consensus 828 ~~~~i~--~i~~l~~~~~~~n 846 (846)
...+. .+++|+.+++++|
T Consensus 744 -p~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 744 -SDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp -CGGGSTTTCTTCCEEECCSS
T ss_pred -hHHhhhccCCCcCEEEeCCC
Confidence 11233 6677777777766
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6e-21 Score=205.63 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=199.8
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
..++.+.+..+... .++. +..+++|++|.+..+..... ..+.++++|++|++++|.+..++. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 45777777666543 2333 67788888888875544321 246778888888888888877665 777888888
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCc
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
|++++|.....++. +..+++|++|++++|.. ..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|...
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC
Confidence 88888765665554 77888888888888763 33433 7788888888888888876654 777888888888886544
Q ss_pred ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCC
Q 036168 685 EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGL 764 (846)
Q Consensus 685 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~ 764 (846)
. .+. +..+++|+.|++++|. +..++. +..+++|++|++++|..... + ......+|+.++++++
T Consensus 213 ~-~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~------~-------~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 213 D-ITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDI------N-------AVKDLTKLKMLNVGSN 275 (347)
T ss_dssp C-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCC------G-------GGTTCTTCCEEECCSS
T ss_pred C-Cch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCC------h-------hHhcCCCcCEEEccCC
Confidence 3 333 7788899999998885 455555 78889999999998843221 0 0112337888888876
Q ss_pred CCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCC
Q 036168 765 PPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDES 844 (846)
Q Consensus 765 ~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~ 844 (846)
.+..++ .+ ..+++|+.|++++|+.....|..+..+++|+.|++++|+ ++.. +.+.++++++.++++
T Consensus 276 -~l~~~~-~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~---------~~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 276 -QISDIS-VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI---------RPLASLSKMDSADFA 341 (347)
T ss_dssp -CCCCCG-GG--GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC---------GGGGGCTTCSEESSS
T ss_pred -ccCCCh-hh--cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc---------cChhhhhccceeehh
Confidence 455554 34 678999999999998777777778889999999999997 3321 126778889999988
Q ss_pred CC
Q 036168 845 DN 846 (846)
Q Consensus 845 ~n 846 (846)
+|
T Consensus 342 ~N 343 (347)
T 4fmz_A 342 NQ 343 (347)
T ss_dssp CC
T ss_pred hh
Confidence 87
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=9.5e-21 Score=202.38 Aligned_cols=268 Identities=13% Similarity=0.106 Sum_probs=169.7
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
+.++.|.+..+... .+.+..|.++++|++|+|++|.+..+ |..+..+++|++|++++|. ++.+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccE
Confidence 46677777644432 22333567777888888888777755 6677778888888887764 556665543 67888
Q ss_pred EecCCcCCCccccccccccCCCcEEEecccccc---cccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS---LLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
|++++|......+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.. ..+|..+. ++|+.|++++|
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCC
Confidence 888777654444455677788888888877765 3445567777888888877643 34554433 67888888877
Q ss_pred CCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcccee
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTL 785 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L 785 (846)
......|..+..+++|++|++++|..... ..... ....+|+.++++++ .+..+|.++ ..+++|++|
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~-----~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L 268 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAV------DNGSL-----ANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVV 268 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEE------CTTTG-----GGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCcee------Chhhc-----cCCCCCCEEECCCC-cCccCChhh--ccCCCcCEE
Confidence 64444456677778888888877742210 00000 01225777777764 455777777 788999999
Q ss_pred ecccccccccCCcCCC------CCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 786 IIRNCPNFMALPESLR------NLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 786 ~L~~~~~l~~lp~~~~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
+|++|+....-+..+. ..+.|+.|++++||.-..... ...+..++.++.+++++|
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~------~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ------PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC------GGGGTTCCCGGGEEC---
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC------ccccccccceeEEEeccc
Confidence 9999865443333332 247889999999984322111 123455667777777766
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=217.30 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCcc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHL 602 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 602 (846)
++..++++.+..+.... ..+..+..+++|++|.+..+... ...+..|.++++|++|+|++|.+..+|.. .+++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 19 LSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CCTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccccEEECCCCcccc-cChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 44678888888776542 22356788889999988865442 33456678889999999999988888776 78889
Q ss_pred CeeeccCCCccc-ccchhhhcCCCCcEEecCCcCC
Q 036168 603 RYLDLSGHDKIK-KLPNSICELHSLQTVCLGGCRE 636 (846)
Q Consensus 603 ~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~ 636 (846)
++|+|++|.... .+|..++++++|++|++++|..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 999998887554 4677888888888888887653
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=8e-21 Score=221.21 Aligned_cols=274 Identities=16% Similarity=0.064 Sum_probs=153.6
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCe
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~ 604 (846)
.++.+.+..+... ...+..+..+++|+.|.+..+... .++..+.++++|++|++++|.+..+ |..+..+++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 4555555544332 112233566667777776644332 1223456667777777777766644 445666777777
Q ss_pred eeccCCCcccccch-hhhcCCCCcEEecCCcCCCccc--cccccccCCCcEEEeccccccc-ccccCCCCCCCCEecccc
Q 036168 605 LDLSGHDKIKKLPN-SICELHSLQTVCLGGCRELEEL--PKDIRYLVNLRMFVVSTKQKSL-LESGIGCLSSLRFLMISD 680 (846)
Q Consensus 605 L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~ 680 (846)
|++++|.....+|. .+..+++|++|++++|...... |..+..+++|++|++++|.+.. .|..+..+++|++|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 77776654444443 3666777777777766543333 5556667777777777766653 344566667777777776
Q ss_pred ccCcccchh-hccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceE
Q 036168 681 CENLEYLFD-DIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKL 759 (846)
Q Consensus 681 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l 759 (846)
|......+. .+..+++|+.|++++|......|..+..+++|++|++++|...... .+.... .....+|+.+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~----~~~l~~L~~L 481 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN----IQKTNS----LQTLGRLEIL 481 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE----ECSSCG----GGGCTTCCEE
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc----cccchh----hccCCCccEE
Confidence 654443332 2666677777777776554455556666777777777766421100 000000 0011255666
Q ss_pred EccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 760 FVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 760 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
+++++.-....|..+ ..+++|++|+|++|...+..|..+..+++| .|++++|.
T Consensus 482 ~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAF--TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ECCCCccCccChhhh--ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 666543222223444 556666666666665555555566666666 66666663
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=6.4e-21 Score=213.76 Aligned_cols=277 Identities=13% Similarity=0.013 Sum_probs=196.2
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhh-hhhh--hcccCc
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEV-LSRE--IGNLKH 601 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~--~~~l~~ 601 (846)
..++.+.+..+.......+..+.++++|++|.+..+... ...+..|.++++|++|+|++|.+.. .+.. +..+++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC---EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccC---ccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 457777777665432222455777888888888755432 2334567788888888888888873 4444 788888
Q ss_pred cCeeeccCCCcccccchh-hhcCCCCcEEecCCcCCCccccccccc----------------------------------
Q 036168 602 LRYLDLSGHDKIKKLPNS-ICELHSLQTVCLGGCRELEELPKDIRY---------------------------------- 646 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~---------------------------------- 646 (846)
|++|+|++|......|.. +.++++|++|++++|......|..+..
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 888888887755555655 778888888888887755544544433
Q ss_pred cCCCcEEEeccccccc-cccc-------------------------------------CC--CCCCCCEeccccccCccc
Q 036168 647 LVNLRMFVVSTKQKSL-LESG-------------------------------------IG--CLSSLRFLMISDCENLEY 686 (846)
Q Consensus 647 l~~L~~L~l~~~~~~~-~~~~-------------------------------------~~--~l~~L~~L~l~~~~~~~~ 686 (846)
+++|++|++++|.+.. .|.. +. ..++|++|++++|.....
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence 3678888888886641 1110 11 126899999999887777
Q ss_pred chhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCC
Q 036168 687 LFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPP 766 (846)
Q Consensus 687 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~ 766 (846)
.|..+..+++|+.|++++|......|..+..+++|++|++++|..... .... .....+|+.|+++++.-
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~-----~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DSRM-----FENLDKLEVLDLSYNHI 359 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CGGG-----GTTCTTCCEEECCSSCC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------ChhH-----hcCcccCCEEECCCCcc
Confidence 788899999999999999976666677899999999999999953221 0000 11133788888888643
Q ss_pred CCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccc
Q 036168 767 LLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPAL 817 (846)
Q Consensus 767 l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 817 (846)
....|.++ ..+++|++|+|++|...+..+..+..+++|+.|++++|+--
T Consensus 360 ~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 360 RALGDQSF--LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CEECTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccChhhc--cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 32335666 78999999999999765544455689999999999999743
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=8.6e-21 Score=220.96 Aligned_cols=134 Identities=16% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKH 601 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~ 601 (846)
++..++++.+..+.... ..+..+.++++|+.|.+..+... .+.+..|.++++|++|+|++|.+..+ |..|+++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIE---TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCccc---ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 44566777666554431 12234566666777666644322 22334456666666666666666644 555666666
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCc-cccccccccCCCcEEEeccccc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELE-ELPKDIRYLVNLRMFVVSTKQK 660 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~ 660 (846)
|++|+|++|......|..++++++|++|++++|.... .+|..++++++|++|++++|.+
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 6666666554333333445555555555555554332 3455555555555555555443
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.5e-20 Score=200.99 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=184.4
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
++++.|.+..+... .+.+..|.++++|++|+|++|.+..+ |..++++++|++|++++|. +..+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCE
Confidence 57888888755432 23345678889999999999988865 6778889999999998775 557776555 78999
Q ss_pred EecCCcCCCccccccccccCCCcEEEecccccc---cccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS---LLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
|++++|......+..+..+++|+.|++++|.+. ..+..+..+ +|++|++++|.. ..+|..+. ++|+.|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-CccCcccc--CCCCEEECCCC
Confidence 999987754434445788999999999988886 345566666 889999988754 44665543 78899999988
Q ss_pred CCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcccee
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTL 785 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L 785 (846)
......+..+..+++|++|++++|..-.. ..... ....+|+.++++++ .+..+|.++ ..+++|++|
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------~~~~~-----~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L 269 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMI------ENGSL-----SFLPTLRELHLDNN-KLSRVPAGL--PDLKLLQVV 269 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCC------CTTGG-----GGCTTCCEEECCSS-CCCBCCTTG--GGCTTCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcC------ChhHh-----hCCCCCCEEECCCC-cCeecChhh--hcCccCCEE
Confidence 65554556788889999999998843221 00000 11236788888775 455788777 788999999
Q ss_pred ecccccccccCCcCCCC------CCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 786 IIRNCPNFMALPESLRN------LEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 786 ~L~~~~~l~~lp~~~~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
+|++|+.....+..+.. .+.|+.|++++||.......+ ..+..+++++.+++++|
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~------~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP------ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG------GGGTTBCCSTTEEC---
T ss_pred ECCCCCCCccChhHccccccccccccccceEeecCcccccccCc------ccccccchhhhhhcccc
Confidence 99998655433333433 467899999999844222211 23556677777777665
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.8e-20 Score=218.32 Aligned_cols=249 Identities=17% Similarity=0.097 Sum_probs=199.0
Q ss_pred cceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEe
Q 036168 551 RARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVC 630 (846)
Q Consensus 551 ~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 630 (846)
+++.+.+..+... .+.+..|..+++|++|++++|.+..+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFF---NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCS---SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccC---ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 6788888755432 3445568899999999999999999999999999999999999876666677899999999999
Q ss_pred cCCcCCCccccc-cccccCCCcEEEecccccccc---cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 631 LGGCRELEELPK-DIRYLVNLRMFVVSTKQKSLL---ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 631 l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
+++|.....+|. .+..+++|+.|++++|.+... +..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 999987656655 488999999999999998855 5678999999999999988777778889999999999999997
Q ss_pred CCccccc-cccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCC---CCchhhhcCCCCcc
Q 036168 707 RLISLPP-AVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL---ELPQWLLQGSTKTL 782 (846)
Q Consensus 707 ~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~---~l~~~~~~~~l~~L 782 (846)
.....|. .+..+++|++|++++|..... ... ......+|+.++++++.-.. ..+..+ ..+++|
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~l~~L 478 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDIS------SEQ-----LFDGLPALQHLNLQGNHFPKGNIQKTNSL--QTLGRL 478 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTT------CTT-----TTTTCTTCCEEECTTCBCGGGEECSSCGG--GGCTTC
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCc------CHH-----HHhCCCCCCEEECCCCCCCccccccchhh--ccCCCc
Confidence 5554444 488999999999999853220 000 01113378888888764321 112334 678999
Q ss_pred ceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 783 KTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 783 ~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
++|+|++|...+..|..+..+++|+.|++++|.
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 999999998777778889999999999999995
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=6.7e-20 Score=197.42 Aligned_cols=278 Identities=17% Similarity=0.177 Sum_probs=211.6
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
..++++.+.++.... + ..+..+++|+.|.+..+..... .+ +.++++|++|++++|.+..++ .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~--~-~~~~~~~~L~~L~l~~n~i~~~---~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS--I-QGIEYLTNLEYLNLNGNQITDI---SP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccccEEEEeCCcccc--c-hhhhhcCCccEEEccCCccccc---hh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 457788877665432 3 2377899999999986654321 12 789999999999999998875 6899999999
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCc
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+...+. +..+++|++|++++|...
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 9999886 566666 89999999999999976766554 8999999999999999887764 889999999999998644
Q ss_pred ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCC
Q 036168 685 EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGL 764 (846)
Q Consensus 685 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~ 764 (846)
.++. +..+++|+.|++++|.. ..++. +..+++|++|++++|...... . .....+|+.++++++
T Consensus 191 -~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l~~n~l~~~~------~-------~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 191 -DISP-LASLTSLHYFTAYVNQI-TDITP-VANMTRLNSLKIGNNKITDLS------P-------LANLSQLTWLEIGTN 253 (347)
T ss_dssp -CCGG-GGGCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCG------G-------GTTCTTCCEEECCSS
T ss_pred -cccc-ccCCCccceeecccCCC-CCCch-hhcCCcCCEEEccCCccCCCc------c-------hhcCCCCCEEECCCC
Confidence 4444 88999999999999854 44444 788999999999998533210 0 112337888888886
Q ss_pred CCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCC
Q 036168 765 PPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDES 844 (846)
Q Consensus 765 ~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~ 844 (846)
.+..++ .+ ..+++|++|++++|. ++.+| .+..+++|+.|++++|+.-.. ....+..+++++.++++
T Consensus 254 -~l~~~~-~~--~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 254 -QISDIN-AV--KDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNE--------DMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp -CCCCCG-GG--TTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGG--------GHHHHHTCTTCSEEECC
T ss_pred -ccCCCh-hH--hcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCc--------ChhHhhccccCCEEEcc
Confidence 444554 34 788999999999995 45555 478899999999999963221 11234566777777777
Q ss_pred CC
Q 036168 845 DN 846 (846)
Q Consensus 845 ~n 846 (846)
+|
T Consensus 320 ~n 321 (347)
T 4fmz_A 320 QN 321 (347)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=4.2e-20 Score=212.60 Aligned_cols=108 Identities=22% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCcc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHL 602 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 602 (846)
++..++.+.+..+.... ..+..+.++++|+.|.+..+... .+.+..|.++++|++|+|++|.+..+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 45678888888776542 22356788889999988865442 33456678889999999999998888876 78899
Q ss_pred CeeeccCCCccc-ccchhhhcCCCCcEEecCCcCC
Q 036168 603 RYLDLSGHDKIK-KLPNSICELHSLQTVCLGGCRE 636 (846)
Q Consensus 603 ~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~ 636 (846)
++|+|++|.... .+|..++++++|++|++++|..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 999998876443 3457888888888888888763
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=223.97 Aligned_cols=163 Identities=17% Similarity=0.084 Sum_probs=115.1
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKH 601 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~ 601 (846)
+|..++.+.+..+.... ..+..+.++++|+.|.+..+.. ...+.+..|.++++|++|+|++|.+..+ |..|+++++
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 66788999988776542 2345678889999998885432 2233356688899999999999988855 778889999
Q ss_pred cCeeeccCCCcccccchh--hhcCCCCcEEecCCcCCCcccc-ccccccCCCcEEEeccccccc-ccccCCCC--CCCCE
Q 036168 602 LRYLDLSGHDKIKKLPNS--ICELHSLQTVCLGGCRELEELP-KDIRYLVNLRMFVVSTKQKSL-LESGIGCL--SSLRF 675 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l--~~L~~ 675 (846)
|++|+|++|.....+|.. ++++++|++|++++|......+ ..++++++|++|++++|.+.. .+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999988765556655 8889999999999887555433 568889999999998887753 23333333 44555
Q ss_pred eccccccCcccch
Q 036168 676 LMISDCENLEYLF 688 (846)
Q Consensus 676 L~l~~~~~~~~~~ 688 (846)
|++++|......+
T Consensus 179 L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 179 FSLAANSLYSRVS 191 (844)
T ss_dssp CEECCSBSCCCCC
T ss_pred EECCCCccccccc
Confidence 5555444433333
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=4e-20 Score=215.27 Aligned_cols=267 Identities=16% Similarity=0.068 Sum_probs=167.7
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCee
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYL 605 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 605 (846)
.++.+.+..+... .++ .+..+++|+.|.+..+... . ++ .+ .+++|+.|++++|..... ..+..+++|++|
T Consensus 286 ~L~~L~l~~~~~~--~l~-~l~~~~~L~~L~l~~n~l~---~-lp-~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L 355 (606)
T 3vq2_A 286 NVSAMSLAGVSIK--YLE-DVPKHFKWQSLSIIRCQLK---Q-FP-TL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYL 355 (606)
T ss_dssp TCSEEEEESCCCC--CCC-CCCTTCCCSEEEEESCCCS---S-CC-CC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEE
T ss_pred CCCEEEecCccch--hhh-hccccccCCEEEcccccCc---c-cc-cC-CCCccceeeccCCcCccc-hhhccCCCCCEE
Confidence 4555555554432 122 4555666666666644332 1 11 22 666677777766633211 145567777777
Q ss_pred eccCCCcccc--cchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccc--ccCCCCCCCCEeccccc
Q 036168 606 DLSGHDKIKK--LPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE--SGIGCLSSLRFLMISDC 681 (846)
Q Consensus 606 ~L~~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 681 (846)
++++|..... +|..+..+++|++|++++|. +..+|..+..+++|+.|++++|.+...+ ..+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 7776653322 36667777777777777766 4556667777777778877777776443 35677777888888777
Q ss_pred cCcccchhhccCCCCcCEEEeecCCCCc-cccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEE
Q 036168 682 ENLEYLFDDIDQLCVLRTIFIADCPRLI-SLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLF 760 (846)
Q Consensus 682 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~ 760 (846)
......|..+..+++|+.|++++|.... .+|..+..+++|++|++++|..... ... ......+|+.++
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~-----~~~~l~~L~~L~ 503 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI------SWG-----VFDTLHRLQLLN 503 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------CTT-----TTTTCTTCCEEE
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc------Chh-----hhcccccCCEEE
Confidence 7666667777777888888887775444 2566777778888888877742210 000 011123677777
Q ss_pred ccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCC-CcceeeccCCccc
Q 036168 761 VEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLE-ALETLAIGGCPAL 817 (846)
Q Consensus 761 l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l 817 (846)
++++.-....|..+ ..+++|++|+|++|+ ++.+|..+..++ +|+.|++++||-.
T Consensus 504 Ls~N~l~~~~~~~~--~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 504 MSHNNLLFLDSSHY--NQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCSSCCSCEEGGGT--TTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCCcCCCcCHHHc--cCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 77764433336666 677888888888885 446777677776 5888888888744
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=3.8e-20 Score=218.53 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=121.2
Q ss_pred CCCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccC
Q 036168 522 SIPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLK 600 (846)
Q Consensus 522 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~ 600 (846)
.++..++++.+..+.... ..+..+.++++|++|.+..+... ...+..|.++++|++|+|++|.+..+|. .|++++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp CSCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 356789999998776542 22345888999999999865442 3345667889999999999999998886 589999
Q ss_pred ccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccccc---CCCCCCCCEec
Q 036168 601 HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESG---IGCLSSLRFLM 677 (846)
Q Consensus 601 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~ 677 (846)
+|++|+|++|......|..|+++++|++|++++|......|..+.++++|++|++++|.++.++.. ...+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 999999998875444457789999999999999887666777788899999999998887754322 22456777777
Q ss_pred cccccCc
Q 036168 678 ISDCENL 684 (846)
Q Consensus 678 l~~~~~~ 684 (846)
+++|...
T Consensus 178 L~~n~l~ 184 (680)
T 1ziw_A 178 LSSNQIK 184 (680)
T ss_dssp CTTCCCC
T ss_pred CCCCccc
Confidence 7766443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.5e-20 Score=215.68 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=153.9
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccC
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLR 603 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~ 603 (846)
..++.+.+..+.... -.+..+..+++|+.|.+..+... .+.+..|..+++|++|+|++|.+..+|+ .|+++++|+
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 345666666554321 11234667888888888755432 3344567788888889998888886654 468888889
Q ss_pred eeeccCCCcccccchh-hhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEecccccc
Q 036168 604 YLDLSGHDKIKKLPNS-ICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCE 682 (846)
Q Consensus 604 ~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 682 (846)
+|+|++|. +..+|.. |+.+++|++|++++|......|..+..+++|++|++++|.++.++ ++.+++|+.|++++|.
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 99988875 4455544 578888899998888766656667888888899988888877543 2334444444333322
Q ss_pred Ccc------------------cc--------------------hhhccCCCCcCEEEeecCCCCccccccccCCCCcCeE
Q 036168 683 NLE------------------YL--------------------FDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETL 724 (846)
Q Consensus 683 ~~~------------------~~--------------------~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L 724 (846)
... .+ +..+..+++|+.|++++|......|..+..+++|+.|
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 110 00 1234445555555555554433444455555555555
Q ss_pred ecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCC
Q 036168 725 MLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLE 804 (846)
Q Consensus 725 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 804 (846)
+|++|..... +.......+|+.|+++++ .+..+|.++ ..+++|+.|+|++|+. ..+| +..++
T Consensus 284 ~Ls~N~l~~l------------~~~~~~l~~L~~L~Ls~N-~l~~i~~~~--~~l~~L~~L~L~~N~l-~~~~--~~~~~ 345 (597)
T 3oja_B 284 YISNNRLVAL------------NLYGQPIPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNSI-VTLK--LSTHH 345 (597)
T ss_dssp ECTTSCCCEE------------ECSSSCCTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSCC-CCCC--CCTTC
T ss_pred ECCCCCCCCC------------CcccccCCCCcEEECCCC-CCCccCccc--ccCCCCCEEECCCCCC-CCcC--hhhcC
Confidence 5555532110 000011224555555553 233455544 4455666666665543 2232 44555
Q ss_pred CcceeeccCCc
Q 036168 805 ALETLAIGGCP 815 (846)
Q Consensus 805 ~L~~L~l~~c~ 815 (846)
+|+.|++++||
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 66666666655
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=3.7e-20 Score=202.76 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=104.5
Q ss_pred CceeEEEEEcCCCCcchhh-hhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCcc
Q 036168 525 KRVRHLSFVGANTSINDFS-SLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHL 602 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~-~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L 602 (846)
..++.+.+..+... .++ ..+..+++|+.|.+..+... .+.+..|..+++|++|+|++|.+..++ ..++++++|
T Consensus 45 ~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchh--hCChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46778888766543 233 34677888999988755432 233446788899999999999888664 457888999
Q ss_pred CeeeccCCCcccccchh-hhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEecccc
Q 036168 603 RYLDLSGHDKIKKLPNS-ICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISD 680 (846)
Q Consensus 603 ~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 680 (846)
++|+|++|. ++.+|.. +..+++|++|++++|......|..+..+++|++|++++|.++.++ +..+++|+.|++++
T Consensus 120 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCS
T ss_pred CEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccc
Confidence 999999875 5566655 578899999999988765555667888899999999988877543 33344444444433
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=8.6e-20 Score=199.86 Aligned_cols=261 Identities=14% Similarity=0.098 Sum_probs=156.2
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhh-hcccCccCe
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSRE-IGNLKHLRY 604 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~~ 604 (846)
.++.+.+..+.... ..+..+..+++|+.|.+..+... ...+..|.++++|++|+|++|.+..+|.. |.++++|++
T Consensus 70 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 70 QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 46666666554331 12235667777777777654432 23344566777777777777777777655 467777777
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc-------------------cccccc
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ-------------------KSLLES 665 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-------------------~~~~~~ 665 (846)
|++++|......|..+..+++|++|++++|... .++ +..+++|++|++++|. +..+|.
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 777777644444556777777777777776532 222 3334444444444433 332222
Q ss_pred cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccc
Q 036168 666 GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEES 745 (846)
Q Consensus 666 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 745 (846)
. .+++|++|++++|.... . ..+..+++|+.|++++|......|..+..+++|++|++++|.....
T Consensus 223 ~--~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------- 287 (390)
T 3o6n_A 223 P--VNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL----------- 287 (390)
T ss_dssp C--CCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-----------
T ss_pred c--ccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-----------
Confidence 1 23456666666654332 2 4566777777777777755445566677777777777777642210
Q ss_pred cccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 746 HCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 746 ~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
........+|+.|+++++ .+..+|..+ ..+++|++|+|++|+. ..+| +..+++|+.|++++||
T Consensus 288 -~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 288 -NLYGQPIPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -ECSSSCCTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred -CcccCCCCCCCEEECCCC-cceecCccc--cccCcCCEEECCCCcc-ceeC--chhhccCCEEEcCCCC
Confidence 000112236777777775 455666665 5677788888887754 3444 5667788888888776
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=9.4e-20 Score=202.59 Aligned_cols=253 Identities=14% Similarity=0.131 Sum_probs=160.7
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
..++++.+..+.... ++ +..+++|+.|.+..+..... .+.++++|++|++++|.+..+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 356667766655432 22 56677777777775543321 1667778888888888777664 777788888
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCc
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
|++++|. ++.+| ++.+++|++|++++|..+..+ .+..+++|+.|++++|.++.+| ++.+++|+.|++++|...
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 8888765 44443 677788888888887656655 3677888888888888888775 778888888888887544
Q ss_pred ccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCC-----cccceE
Q 036168 685 EYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTR-----LHLRKL 759 (846)
Q Consensus 685 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~-----l~L~~l 759 (846)
. + .++.+++|+.|++++|. +..+| +..+++|+.|++++|..-... ......+.. -+|+.+
T Consensus 205 ~-~--~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~---------~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 205 K-L--DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELD---------VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC---------CTTCTTCCEEECTTCCCSCC
T ss_pred e-e--ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcC---------HHHCCCCCEEeccCCCCCEE
Confidence 3 3 37788888888888885 44466 778888888888888432210 000111111 145555
Q ss_pred EccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCcccc
Q 036168 760 FVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALS 818 (846)
Q Consensus 760 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 818 (846)
++++++.+..+| + ..+++|+.|+|++|+.++.+|. ..++|+.|++++|+.++
T Consensus 270 ~l~~n~~~~~~~--~--~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--A--EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLV 321 (457)
T ss_dssp CCTTCTTCCEEE--C--TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCC
T ss_pred ECCCCccCCccc--c--cccccCCEEECCCCcccceecc---CCCcceEechhhcccCC
Confidence 555555444444 1 4566777777777766655553 22334444444444333
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=212.40 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=32.8
Q ss_pred hhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCccc-ccchhhhcCCCCcEEecCCcC
Q 036168 572 CISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIK-KLPNSICELHSLQTVCLGGCR 635 (846)
Q Consensus 572 ~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~ 635 (846)
.|.++++|++|++++|.+..++. .++++++|++|++++|.... .+|..++++++|++|++++|.
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 34444455555555554444433 35555555555555554322 345556666666666665554
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=6.6e-20 Score=212.08 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=192.5
Q ss_pred ccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCC
Q 036168 548 DSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSL 626 (846)
Q Consensus 548 ~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 626 (846)
.+.+++.+.+..+.. ..+++..|.++++|++|+|++|.+..++. .|+.+++|++|+|++|......|..|+.+++|
T Consensus 49 ~l~~l~~l~l~~~~l---~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEE---SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCC---CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 457888888875433 34455678899999999999999997664 89999999999999987555556678999999
Q ss_pred cEEecCCcCCCcccccc-ccccCCCcEEEeccccccccc-ccCCCCCCCCEeccccccCcccchhhccCCCC--------
Q 036168 627 QTVCLGGCRELEELPKD-IRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISDCENLEYLFDDIDQLCV-------- 696 (846)
Q Consensus 627 ~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-------- 696 (846)
++|+|++|. +..+|.. +.++++|++|++++|.+..++ ..++.+++|++|++++|..... + ++.+++
T Consensus 126 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred CEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence 999999987 4556654 689999999999999998554 4689999999999999865432 2 222333
Q ss_pred --------------------------------cCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhccccc
Q 036168 697 --------------------------------LRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEE 744 (846)
Q Consensus 697 --------------------------------L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 744 (846)
|+.|++++|.. .. +..+..+++|+.|+|++|..... .+.
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~-~~~l~~l~~L~~L~Ls~N~l~~~------~~~- 272 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD-TAWLLNYPGLVEVDLSYNELEKI------MYH- 272 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CC-CGGGGGCTTCSEEECCSSCCCEE------ESG-
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC-CC-ChhhccCCCCCEEECCCCccCCC------CHH-
Confidence 33333333321 12 24577889999999999853221 000
Q ss_pred ccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCC
Q 036168 745 SHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQ 824 (846)
Q Consensus 745 ~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~ 824 (846)
......+|+.|+++++ .+..+|..+ ..+++|+.|+|++|.. ..+|..+..+++|+.|+|++|+... .
T Consensus 273 ----~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~~-~---- 339 (597)
T 3oja_B 273 ----PFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT-L---- 339 (597)
T ss_dssp ----GGTTCSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCC-C----
T ss_pred ----HhcCccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCCCC-c----
Confidence 1112337888888874 455677666 7799999999999964 5788888899999999999997321 1
Q ss_pred CCCCCCcccccceeeeCCCCCC
Q 036168 825 TGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 825 ~~~~~~~i~~i~~l~~~~~~~n 846 (846)
.+..++.|+.+++++|
T Consensus 340 ------~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 340 ------KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp ------CCCTTCCCSEEECCSS
T ss_pred ------ChhhcCCCCEEEeeCC
Confidence 1345566666667665
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=191.98 Aligned_cols=225 Identities=16% Similarity=0.099 Sum_probs=129.8
Q ss_pred CceeEEEeCCCChhhhhhh-hcccCccCeeeccCCCccc--ccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEE
Q 036168 577 QFLRVIDLSDSAIEVLSRE-IGNLKHLRYLDLSGHDKIK--KLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMF 653 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 653 (846)
++|++|+|++|.+..+|.. |.++++|++|+|++|.... ..|..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 3556666666666555543 4556666666666554221 124445556666666666554 34455555666666666
Q ss_pred Eecccccccccc--cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCc-cccccccCCCCcCeEecccCc
Q 036168 654 VVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLI-SLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 654 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~ 730 (846)
++++|.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|.... .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666666554432 45556666666666655444445555566666666666654332 345555666666666666653
Q ss_pred ccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCch-hhhcCCCCccceeecccccccccCCcCCCCCC-Ccce
Q 036168 731 SLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKTLIIRNCPNFMALPESLRNLE-ALET 808 (846)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~-~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~ 808 (846)
.... .... .....+|+.++++++. +..++. .+ ..+++|++|+|++|+..+..|..+..++ +|+.
T Consensus 187 l~~~------~~~~-----~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 187 LEQL------SPTA-----FNSLSSLQVLNMSHNN-FFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp CCEE------CTTT-----TTTCTTCCEEECTTSC-CSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred cCCc------CHHH-----hcCCCCCCEEECCCCc-cCccChhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 2110 0000 0011245555555532 233332 34 6789999999999988777888888885 9999
Q ss_pred eeccCCcc
Q 036168 809 LAIGGCPA 816 (846)
Q Consensus 809 L~l~~c~~ 816 (846)
|++++|+-
T Consensus 253 L~L~~N~~ 260 (306)
T 2z66_A 253 LNLTQNDF 260 (306)
T ss_dssp EECTTCCE
T ss_pred EEccCCCe
Confidence 99999974
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=220.70 Aligned_cols=180 Identities=20% Similarity=0.190 Sum_probs=148.8
Q ss_pred ccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCCh-hhh-hhhhcccCccCeeeccCCCcccccchhhhcCCC
Q 036168 548 DSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAI-EVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHS 625 (846)
Q Consensus 548 ~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 625 (846)
-.++++.|.+..+... ...+..|.++++|++|+|++|.. ..+ |..|.++++|++|+|++|......|..|+++++
T Consensus 22 lp~~l~~LdLs~N~i~---~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCC---EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCC---ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 4578999999865543 33445688999999999999954 455 678999999999999999866677999999999
Q ss_pred CcEEecCCcCCCcccccc--ccccCCCcEEEecccccccc--cccCCCCCCCCEeccccccCcccchhhccCC--CCcCE
Q 036168 626 LQTVCLGGCRELEELPKD--IRYLVNLRMFVVSTKQKSLL--ESGIGCLSSLRFLMISDCENLEYLFDDIDQL--CVLRT 699 (846)
Q Consensus 626 L~~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~ 699 (846)
|++|+|++|.....+|.. +.++++|++|++++|.+... +..++++++|++|++++|......+..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999999866656655 89999999999999999854 3468999999999999987766667777776 89999
Q ss_pred EEeecCCCCccccccccCCCC------cCeEecccCc
Q 036168 700 IFIADCPRLISLPPAVKYLSS------LETLMLEDCE 730 (846)
Q Consensus 700 L~l~~~~~~~~l~~~~~~l~~------L~~L~l~~~~ 730 (846)
|++++|......|..+..+++ |+.|++++|.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 999999877777776666665 9999999883
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.1e-19 Score=209.07 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=115.6
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhh-hcccCc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSRE-IGNLKH 601 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~ 601 (846)
++..++.+.+..+.... ..+..+.++++|++|.+..+... ...+..|.++++|++|+|++|.+..++.. |+++++
T Consensus 24 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 44678888888776542 22456788899999998865443 33445678889999999999998866654 888999
Q ss_pred cCeeeccCCCccc-ccchhhhcCCCCcEEecCCcCCCcccc-ccccccCCCcEEEecccccc-cccccCCCCCCCCEecc
Q 036168 602 LRYLDLSGHDKIK-KLPNSICELHSLQTVCLGGCRELEELP-KDIRYLVNLRMFVVSTKQKS-LLESGIGCLSSLRFLMI 678 (846)
Q Consensus 602 L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l 678 (846)
|++|++++|.... ..|..++++++|++|++++|.....+| ..+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999886443 456778889999999999887666665 56888889999999888877 35666666666666666
Q ss_pred cccc
Q 036168 679 SDCE 682 (846)
Q Consensus 679 ~~~~ 682 (846)
+.|.
T Consensus 180 ~~n~ 183 (549)
T 2z81_A 180 HLSE 183 (549)
T ss_dssp ECSB
T ss_pred ccCc
Confidence 5543
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=8.9e-20 Score=208.08 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=103.3
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
++++.|.+..+... ...+..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|. ++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSE
T ss_pred ccccEEECCCCccc---ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccE
Confidence 78999999866543 34456789999999999999999966 6789999999999999886 6688876 8999999
Q ss_pred EecCCcCCCc-cccccccccCCCcEEEecccccccccccCCCCCCC--CEeccccccC
Q 036168 629 VCLGGCRELE-ELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSL--RFLMISDCEN 683 (846)
Q Consensus 629 L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 683 (846)
|++++|.... .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 9999998655 478899999999999999998764 235556666 7777776654
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.7e-19 Score=198.68 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=178.8
Q ss_pred CceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 577 QFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
++|+.|+|++|.+..+ +..|.++++|++|+|++|......|..|.++++|++|+|++|......+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6899999999999866 567999999999999998765566688999999999999998754444456889999999999
Q ss_pred cccccccccc-cCCCCCCCCEeccccccCcccchh-hccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccc
Q 036168 656 STKQKSLLES-GIGCLSSLRFLMISDCENLEYLFD-DIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLT 733 (846)
Q Consensus 656 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 733 (846)
++|.+..++. .+..+++|+.|++++|+.+..++. .+..+++|+.|++++|. +..+| .+..+++|+.|+|++|....
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEECcCCcCcc
Confidence 9999996654 688999999999999888887765 58899999999999985 55665 48889999999999985332
Q ss_pred hhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccC
Q 036168 734 LNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGG 813 (846)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 813 (846)
. .... .....+|+.|+++++.-....+..+ ..+++|+.|+|++|......+..+..+++|+.|+|++
T Consensus 233 ~------~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 233 I------RPGS-----FHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp E------CGGG-----GTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred c------Cccc-----ccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 1 0111 1112378888888754322234445 7889999999999966554555678899999999999
Q ss_pred Cccc
Q 036168 814 CPAL 817 (846)
Q Consensus 814 c~~l 817 (846)
||--
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 9844
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=198.85 Aligned_cols=224 Identities=20% Similarity=0.254 Sum_probs=151.0
Q ss_pred CceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 577 QFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
++++.|+|++|.+..++ ..|.++++|++|+|++|......+..|.++++|++|+|++|......+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777788877777554 56777788888888777644444566777788888888777643333345777788888888
Q ss_pred cccccccccc-cCCCCCCCCEeccccccCcccchh-hccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccc
Q 036168 656 STKQKSLLES-GIGCLSSLRFLMISDCENLEYLFD-DIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLT 733 (846)
Q Consensus 656 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 733 (846)
++|.+..++. .+..+++|++|++++|+.+..++. .+..+++|+.|++++|. +..+|. +..+++|++|+|++|....
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCc
Confidence 8777775543 567777888888877766666554 56777888888887774 456653 6677788888888774221
Q ss_pred hhhhhhcccccccccCCCCCcccceEEccCCCCCCCC-chhhhcCCCCccceeecccccccccCCcCCCCCCCcceeecc
Q 036168 734 LNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIG 812 (846)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l-~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 812 (846)
. .... .....+|+.|+++++. +..+ +..+ ..+++|+.|+|++|......+..+..+++|+.|+|+
T Consensus 222 ~------~~~~-----~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 222 I------RPGS-----FQGLMHLQKLWMIQSQ-IQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp E------CTTT-----TTTCTTCCEEECTTCC-CCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred c------Chhh-----hccCccCCEEECCCCc-eeEEChhhh--cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 0 0000 1112256666666542 3333 3334 678999999999996655555567889999999999
Q ss_pred CCcc
Q 036168 813 GCPA 816 (846)
Q Consensus 813 ~c~~ 816 (846)
+||-
T Consensus 288 ~Np~ 291 (440)
T 3zyj_A 288 HNPW 291 (440)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 9984
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2.7e-19 Score=199.85 Aligned_cols=226 Identities=17% Similarity=0.140 Sum_probs=172.7
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
++++.|.+..+... .+.+..|.++++|++|+|++|.+..++ ..|.++++|++|+|++|......+..+..+++|++
T Consensus 75 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCc---eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 68899999865543 334566889999999999999998665 67899999999999988744444455889999999
Q ss_pred EecCCcCCCccccccccccCCCcEEEecc-cccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVST-KQKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
|++++|......+..+..+++|+.|++++ +.+..++. .+..+++|++|++++|... .+| .+..+++|+.|++++|.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCc
Confidence 99999885544455789999999999998 44555443 5889999999999997654 454 58899999999999997
Q ss_pred CCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceee
Q 036168 707 RLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLI 786 (846)
Q Consensus 707 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~ 786 (846)
.....|..+..+++|+.|++++|..... .... .....+|+.|+++++ .+..+|...+ ..+++|+.|+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~ 296 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLI------ERNA-----FDGLASLVELNLAHN-NLSSLPHDLF-TPLRYLVELH 296 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEE------CTTT-----TTTCTTCCEEECCSS-CCSCCCTTSS-TTCTTCCEEE
T ss_pred CcccCcccccCccCCCEEEeCCCcCceE------CHHH-----hcCCCCCCEEECCCC-cCCccChHHh-ccccCCCEEE
Confidence 6666688899999999999999853221 0110 111237888888875 4556654432 6789999999
Q ss_pred ccccccc
Q 036168 787 IRNCPNF 793 (846)
Q Consensus 787 L~~~~~l 793 (846)
|++|+..
T Consensus 297 L~~Np~~ 303 (452)
T 3zyi_A 297 LHHNPWN 303 (452)
T ss_dssp CCSSCEE
T ss_pred ccCCCcC
Confidence 9999754
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=5e-19 Score=196.76 Aligned_cols=253 Identities=14% Similarity=0.099 Sum_probs=162.0
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCe
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRY 604 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~ 604 (846)
..++.+.+..+... .++ .+..+++|+.|.+..+..... + +..+++|++|++++|.+..++ ++.+++|++
T Consensus 42 ~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 35677777665543 233 466777788887775544321 1 667778888888888777664 777788888
Q ss_pred eeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc-cccccccCCCCCCCCEeccccccC
Q 036168 605 LDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ-KSLLESGIGCLSSLRFLMISDCEN 683 (846)
Q Consensus 605 L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~ 683 (846)
|++++|. ++.+| ++.+++|++|++++|.. ..++ ++.+++|+.|++++|. +..+ .++.+++|++|++++|..
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 8888775 44454 77778888888887763 3343 6777788888888774 3333 466778888888887654
Q ss_pred cccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccC
Q 036168 684 LEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEG 763 (846)
Q Consensus 684 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~ 763 (846)
+.+| +..+++|+.|++++|. +..+ .+..+++|+.|++++|..-. .+ .....+|+.+++++
T Consensus 183 -~~l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~l~~------ip--------~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 183 -TELD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNKLTE------ID--------VTPLTQLTYFDCSV 242 (457)
T ss_dssp -CCCC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSCCSC------CC--------CTTCTTCSEEECCS
T ss_pred -ceec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCcccc------cC--------ccccCCCCEEEeeC
Confidence 3344 6777888888888775 3344 26778888888888874221 00 11123566666665
Q ss_pred CCCCCCCchhhhcCCC-------CccceeecccccccccCCcCCCCCCCcceeeccCCcccccc
Q 036168 764 LPPLLELPQWLLQGST-------KTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSER 820 (846)
Q Consensus 764 ~~~l~~l~~~~~~~~l-------~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 820 (846)
+ .+..+|...+ ..+ .+|+.|++++|...+.+| ++.+++|+.|++++|+.+...
T Consensus 243 N-~l~~~~~~~l-~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 243 N-PLTELDVSTL-SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp S-CCSCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred C-cCCCcCHHHC-CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 4 2333331110 112 255667777776666666 467899999999999866544
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=5.9e-19 Score=196.31 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=191.6
Q ss_pred eeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
...++.++..+..+|..+. +++++|+|++|......+..|.++++|++|+|++|......+..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5678888889999998765 78999999998755555688999999999999998865556678999999999999999
Q ss_pred ccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccchhh
Q 036168 659 QKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTLNL 736 (846)
Q Consensus 659 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~ 736 (846)
.++.++. .+..+++|++|++++|......+..+..+++|+.|++++|..+..++. .+..+++|++|++++|..-.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--- 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---
Confidence 9997765 589999999999999876555556789999999999999888888776 58899999999999995322
Q ss_pred hhhcccccccccCCCCCcccceEEccCCCCCCCC-chhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 737 KIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 737 ~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l-~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
.+. .....+|+.|+++++. +..+ |..+ ..+++|+.|+|++|......|..+..+++|+.|+|++|.
T Consensus 200 ---~~~-------~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 200 ---IPN-------LTPLIKLDELDLSGNH-LSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp ---CCC-------CTTCSSCCEEECTTSC-CCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ---ccc-------cCCCcccCEEECCCCc-cCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 111 1123378889998863 4444 5555 789999999999998777778889999999999999994
Q ss_pred cccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 816 ALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 816 ~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
++... ...+..+++++.+++++|
T Consensus 267 -l~~~~-------~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 267 -LTLLP-------HDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp -CCCCC-------TTTTSSCTTCCEEECCSS
T ss_pred -CCccC-------hhHhccccCCCEEEcCCC
Confidence 33221 112445666777777666
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=198.04 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=187.7
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchh-hhcCCCCc
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNS-ICELHSLQ 627 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~ 627 (846)
++++.|.+..+... .+.+..|.++++|++|++++|.+..++ ..|.++++|++|+|++|. ++.+|.. ++++++|+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 58999999865543 234446789999999999999998664 568999999999999886 5556654 88999999
Q ss_pred EEecCCcCCCccccc--cccccCCCcEEEecccc-cccc-cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEee
Q 036168 628 TVCLGGCRELEELPK--DIRYLVNLRMFVVSTKQ-KSLL-ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIA 703 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 703 (846)
+|++++|. +..+|. .+..+++|++|++++|. +..+ +..+..+++|++|++++|......|..+..+++|+.|+++
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 99999986 456665 68899999999999984 5544 5678899999999999988777678889999999999999
Q ss_pred cCCCCcccccc-ccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcc
Q 036168 704 DCPRLISLPPA-VKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTL 782 (846)
Q Consensus 704 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L 782 (846)
+|. +..+|.. +..+++|++|++++|..-.... ..... ......+..++|+.+.+++. .+..+|.++ ..+++|
T Consensus 207 ~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~--~~~~~~l~~l~L~~~~l~~~-~l~~l~~~l--~~l~~L 279 (353)
T 2z80_A 207 MKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHF-SELST--GETNSLIKKFTFRNVKITDE-SLFQVMKLL--NQISGL 279 (353)
T ss_dssp CSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCC-C--------CCCCCCEEEEESCBCCHH-HHHHHHHHH--HTCTTC
T ss_pred CCc-cccchhhhhhhcccccEEECCCCccccccc-ccccc--ccccchhhccccccccccCc-chhhhHHHH--hcccCC
Confidence 986 4566654 4458999999999985322100 00000 00111222334444444432 122466677 789999
Q ss_pred ceeecccccccccCCcCC-CCCCCcceeeccCCccc
Q 036168 783 KTLIIRNCPNFMALPESL-RNLEALETLAIGGCPAL 817 (846)
Q Consensus 783 ~~L~L~~~~~l~~lp~~~-~~l~~L~~L~l~~c~~l 817 (846)
++|+|++|.. +.+|..+ ..+++|++|++++|+-.
T Consensus 280 ~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 280 LELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 9999999954 5777764 89999999999999743
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=6e-19 Score=188.37 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=183.0
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
.+++.+.+..+... .+ +.. -.+.|++|+|++|.+..++. .|.++++|++|+|++|......|..++.+++|++
T Consensus 31 c~l~~l~~~~~~l~---~l-p~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLGLE---KV-PKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EETTEEECTTSCCC---SC-CCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCCeEEEecCCCcc---cc-Ccc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 36788877643332 11 111 13689999999999997765 6899999999999998765566889999999999
Q ss_pred EecCCcCCCccccccccccCCCcEEEeccccccccc-ccCCCCCCCCEeccccccCcc--cchhhccCCCCcCEEEeecC
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISDCENLE--YLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 705 (846)
|++++|. +..+|..+. ++|++|++++|.+..++ ..+..+++|++|++++|.... ..+..+..+++|+.|++++|
T Consensus 105 L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 9999987 567776654 79999999999998654 357899999999999987643 45677899999999999998
Q ss_pred CCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCch-hhhcCCCCccce
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKT 784 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~-~~~~~~l~~L~~ 784 (846)
. +..+|..+. ++|++|++++|..-.. .... .....+|+.|+++++. +..++. ++ ..+++|++
T Consensus 182 ~-l~~l~~~~~--~~L~~L~l~~n~l~~~------~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~ 244 (330)
T 1xku_A 182 N-ITTIPQGLP--PSLTELHLDGNKITKV------DAAS-----LKGLNNLAKLGLSFNS-ISAVDNGSL--ANTPHLRE 244 (330)
T ss_dssp C-CCSCCSSCC--TTCSEEECTTSCCCEE------CTGG-----GTTCTTCCEEECCSSC-CCEECTTTG--GGSTTCCE
T ss_pred c-cccCCcccc--ccCCEEECCCCcCCcc------CHHH-----hcCCCCCCEEECCCCc-CceeChhhc--cCCCCCCE
Confidence 5 566776654 8999999999853221 0000 1112368888888754 334433 45 67899999
Q ss_pred eecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 785 LIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 785 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
|+|++|. ++.+|..+..+++|++|++++|+
T Consensus 245 L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 245 LHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred EECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 9999995 55889889999999999999996
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.5e-18 Score=194.59 Aligned_cols=187 Identities=19% Similarity=0.296 Sum_probs=89.3
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCee
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYL 605 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 605 (846)
.++.+.+..+... ..+. +..+++|+.|.+..+..... .+ +.++++|++|++++|.+..++. +..+++|++|
T Consensus 69 ~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~---~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 69 NLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADI---TP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred CCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccC---hh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 4555555554432 1222 55566666666654333211 11 5556666666666666555543 5556666666
Q ss_pred eccCCCcccccch--------------------hhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccc
Q 036168 606 DLSGHDKIKKLPN--------------------SICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLES 665 (846)
Q Consensus 606 ~L~~~~~~~~lp~--------------------~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 665 (846)
++++|. +..+|. .+..+++|++|++++|. +..++ .+..+++|++|++++|.+...+.
T Consensus 140 ~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccccc
Confidence 665553 222221 14444555555555544 22222 24455555555555555543332
Q ss_pred cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 666 GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 666 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
++.+++|++|++++|... .+ ..+..+++|+.|++++|.. ..++. +..+++|+.|++++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQI-SNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp -GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSS
T ss_pred -ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCcc-ccchh-hhcCCCCCEEECCCC
Confidence 444555555555554322 22 2344555555555555532 22222 445555555555554
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=5.4e-19 Score=186.59 Aligned_cols=243 Identities=16% Similarity=0.119 Sum_probs=184.2
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchh-hhcCCCCcEEecCCcCCCcc--ccccccccCCCcEEEec
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNS-ICELHSLQTVCLGGCRELEE--LPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~ 656 (846)
+.++++++.++.+|..+. ++|++|+|++|. ++.+|.. +.++++|++|++++|..... .|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578889999998887654 799999999886 5567654 78999999999999874322 35677789999999999
Q ss_pred ccccccccccCCCCCCCCEeccccccCcccch-hhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchh
Q 036168 657 TKQKSLLESGIGCLSSLRFLMISDCENLEYLF-DDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLN 735 (846)
Q Consensus 657 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~ 735 (846)
+|.+..+|..+..+++|++|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|....
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--
Confidence 99999888889999999999999976544332 478899999999999997666677778999999999999985221
Q ss_pred hhhhcccccccccCCCCCcccceEEccCCCCCCCC-chhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCC
Q 036168 736 LKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGC 814 (846)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l-~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c 814 (846)
..... ......+|+.|+++++. +..+ |.++ ..+++|++|+|++|......+..+..+++|+.|++++|
T Consensus 165 ---~~~~~-----~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 165 ---NFLPD-----IFTELRNLTFLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ---GEECS-----CCTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred ---ccchh-----HHhhCcCCCEEECCCCC-cCCcCHHHh--cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 00011 11123378888888864 3444 5556 78999999999999766655556889999999999999
Q ss_pred ccccccCCCCCCCCCCcccccc-eeeeCCCCCC
Q 036168 815 PALSERCKPQTGEDWPKIAHIP-QVCLEDESDN 846 (846)
Q Consensus 815 ~~l~~~~~~~~~~~~~~i~~i~-~l~~~~~~~n 846 (846)
+.... ....+.++| +++.+++++|
T Consensus 234 ~l~~~--------~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 234 HIMTS--------KKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCBC--------SSSSCCCCCTTCCEEECTTC
T ss_pred CCccc--------CHHHHHhhhccCCEEEccCC
Confidence 63221 112344443 6777777766
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=2e-18 Score=193.56 Aligned_cols=187 Identities=17% Similarity=0.183 Sum_probs=119.3
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCee
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYL 605 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L 605 (846)
.++.+.+..+... .++ .+..+++|+.|.+..+..... .+ +.++++|++|++++|.+..++. +.++++|++|
T Consensus 47 ~l~~L~l~~~~i~--~l~-~~~~l~~L~~L~Ls~n~l~~~---~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDI---TP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCCC--CCT-TGGGCTTCCEEECCSSCCCCC---GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred cccEEecCCCCCc--cCc-chhhhcCCCEEECCCCccCCc---hh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 5777777665543 233 367789999999986654322 22 7899999999999999998876 9999999999
Q ss_pred eccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe---------------------ccccccccc
Q 036168 606 DLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV---------------------STKQKSLLE 664 (846)
Q Consensus 606 ~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l---------------------~~~~~~~~~ 664 (846)
++++|. +..+|. +..+++|++|++++|. +..++ .+..+++|+.|++ ++|.+..++
T Consensus 118 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 118 TLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp ECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh
Confidence 999885 666665 8999999999999986 33344 2455555555555 444444332
Q ss_pred ccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 665 SGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 665 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
.+..+++|++|++++|......+ ++.+++|+.|++++|. +..++ .+..+++|++|++++|.
T Consensus 194 -~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 194 -VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ 254 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred -hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCc
Confidence 24444455555554443222111 4445555555555553 22232 34555666666666553
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1e-18 Score=206.20 Aligned_cols=259 Identities=13% Similarity=0.047 Sum_probs=179.9
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccch-hhhcCCCCc
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPN-SICELHSLQ 627 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~ 627 (846)
++++.|.+..+... .+.+..|.++++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .|+++++|+
T Consensus 25 ~~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCC
Confidence 68999999865543 34445688999999999999999865 6678999999999999886 556665 699999999
Q ss_pred EEecCCcCCCccccccccccCCCcEEEeccccccc-ccccCCCCCCCCEeccccccCcccchhhcc--CCCCcCEEEeec
Q 036168 628 TVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL-LESGIGCLSSLRFLMISDCENLEYLFDDID--QLCVLRTIFIAD 704 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~ 704 (846)
+|++++|......|..+.++++|++|++++|.+.. .+..++.+++|++|++++|......+..+. .+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99999988655455789999999999999999884 456688999999999999876555455443 568999999999
Q ss_pred CCCCccccccccCCCCcCeEecccCcccchhhh-----------------hh-cccccccccCCCCCcccceEEccCCCC
Q 036168 705 CPRLISLPPAVKYLSSLETLMLEDCESLTLNLK-----------------IE-MEGEESHCDRNKTRLHLRKLFVEGLPP 766 (846)
Q Consensus 705 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-----------------~~-~~~~~~~~~~~l~~l~L~~l~l~~~~~ 766 (846)
|......|..+..+++|+.|++++|........ .. ...............+|+.++++++.-
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 976555566677777766666665431100000 00 000000000001112377777776543
Q ss_pred CCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCC
Q 036168 767 LLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGC 814 (846)
Q Consensus 767 l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c 814 (846)
....|.++ ..+++|++|+|++|...+..|..+..+++|+.|++++|
T Consensus 261 ~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 261 NVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 22223444 67778888888887666666666667777777766643
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=3.4e-19 Score=204.90 Aligned_cols=131 Identities=10% Similarity=0.127 Sum_probs=96.5
Q ss_pred CceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhh--hhhhhcccCcc
Q 036168 525 KRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEV--LSREIGNLKHL 602 (846)
Q Consensus 525 ~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~L 602 (846)
..++++.+..+.... ..+..+..+++|++|.+..+... ...+..|.++++|++|++++|.+.. .|..++++++|
T Consensus 50 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 50 ANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CcccEEECCCCCcCc-cChhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 468888887765542 23356788999999999865542 3445668899999999999999884 46778899999
Q ss_pred CeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 603 RYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 603 ~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
++|++++|...+.+| ..+.++++|++|++++|......|..+..+++|++|+++.|.
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999887667666 578889999999999888666666666555544444444433
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.2e-18 Score=181.51 Aligned_cols=202 Identities=20% Similarity=0.181 Sum_probs=143.8
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
+.++++++.++++++.++.+|..+. ++|+.|+|++|......|..+..+++|++|++++|. +..++.. ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4567788888888888888877654 688888888887555556778888888888888876 4445543 67888888
Q ss_pred EEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCccc
Q 036168 653 FVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESL 732 (846)
Q Consensus 653 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 732 (846)
|++++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..-
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 88888888888888888888888888887655444466888888888888888543333344677888888888877311
Q ss_pred chhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeecc
Q 036168 733 TLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIG 812 (846)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 812 (846)
.+|...+ ..+++|+.|+|++|. ++.+|..+..+++|+.|+|+
T Consensus 162 ------------------------------------~l~~~~~-~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 162 ------------------------------------ELPAGLL-NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ------------------------------------CCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECC
T ss_pred ------------------------------------ccCHHHh-cCcCCCCEEECCCCc-CCccChhhcccccCCeEEeC
Confidence 1221111 456677777777763 44666666666677777777
Q ss_pred CCcc
Q 036168 813 GCPA 816 (846)
Q Consensus 813 ~c~~ 816 (846)
+||-
T Consensus 204 ~Np~ 207 (290)
T 1p9a_G 204 GNPW 207 (290)
T ss_dssp SCCB
T ss_pred CCCc
Confidence 6663
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.2e-18 Score=186.06 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=177.9
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
.+++.+.+..+... .+ +..+ .++|++|++++|.+..++ ..|.++++|++|+|++|......|..++.+++|++
T Consensus 33 c~l~~l~~~~~~l~---~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK---AV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCS---SC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCcc---cc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 36788877644332 11 1111 368999999999998764 57899999999999988755556888999999999
Q ss_pred EecCCcCCCccccccccccCCCcEEEecccccccccc-cCCCCCCCCEeccccccCcc--cchhhccCCCCcCEEEeecC
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLES-GIGCLSSLRFLMISDCENLE--YLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 705 (846)
|++++|. +..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.... ..+..+..+ +|+.|++++|
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 9999976 557776665 899999999999987665 47889999999999987632 456667777 9999999998
Q ss_pred CCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCc-hhhhcCCCCccce
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELP-QWLLQGSTKTLKT 784 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~-~~~~~~~l~~L~~ 784 (846)
. +..+|..+. ++|++|++++|..... ..... ....+|+.|+++++. +..++ .++ ..+++|++
T Consensus 183 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~------~~~~l-----~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~ 245 (332)
T 2ft3_A 183 K-LTGIPKDLP--ETLNELHLDHNKIQAI------ELEDL-----LRYSKLYRLGLGHNQ-IRMIENGSL--SFLPTLRE 245 (332)
T ss_dssp B-CSSCCSSSC--SSCSCCBCCSSCCCCC------CTTSS-----TTCTTCSCCBCCSSC-CCCCCTTGG--GGCTTCCE
T ss_pred C-CCccCcccc--CCCCEEECCCCcCCcc------CHHHh-----cCCCCCCEEECCCCc-CCcCChhHh--hCCCCCCE
Confidence 5 566777654 7999999999853221 00111 112367777777643 33444 345 68899999
Q ss_pred eecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 785 LIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 785 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
|+|++|. ++.+|..+..+++|+.|++++|+
T Consensus 246 L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 246 LHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp EECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred EECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 9999995 55889889999999999999996
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.4e-18 Score=181.22 Aligned_cols=203 Identities=20% Similarity=0.183 Sum_probs=144.8
Q ss_pred CCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccc-cccccccCCCcEE
Q 036168 576 SQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEEL-PKDIRYLVNLRMF 653 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L 653 (846)
.++|+.|+|++|.+..++ ..|..+++|++|+|++|......|..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 467888888888888666 45788888888888887654445777888888888888887644444 6677888888888
Q ss_pred Eecccccccc-cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcc
Q 036168 654 VVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCES 731 (846)
Q Consensus 654 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~ 731 (846)
++++|.+..+ +..+..+++|++|++++|......+..++.+++|+.|++++|. +..+|. .+..+++|++|++++|..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc
Confidence 8888888755 4567788888888888876554444557788888888888875 444544 477788888888888731
Q ss_pred cchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeec
Q 036168 732 LTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAI 811 (846)
Q Consensus 732 l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 811 (846)
.. ..|.++ ..+++|+.|+|++|......+..+..+++|+.|++
T Consensus 190 ~~-----------------------------------~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 190 AH-----------------------------------VHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CE-----------------------------------ECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred cc-----------------------------------cCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 11 112333 56677777777777544433344677777777777
Q ss_pred cCCcc
Q 036168 812 GGCPA 816 (846)
Q Consensus 812 ~~c~~ 816 (846)
++||-
T Consensus 233 ~~N~~ 237 (285)
T 1ozn_A 233 NDNPW 237 (285)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 77763
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=8.3e-19 Score=185.82 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=132.7
Q ss_pred hcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCC
Q 036168 546 LSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHS 625 (846)
Q Consensus 546 ~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 625 (846)
+..+++|+.|.+..+... ...+..|.++++|++|+|++|.+..+++ +..+++|++|++++|. ++.+| .+++
T Consensus 30 ~~~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~ 100 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPS 100 (317)
T ss_dssp HTTGGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTT
T ss_pred hccCCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCC
Confidence 344556666666644332 2233455666666666666666654443 6666666666666554 33333 2356
Q ss_pred CcEEecCCcCCCccccccccccCCCcEEEeccccccccc-ccCCCCCCCCEeccccccCcccchhhc-cCCCCcCEEEee
Q 036168 626 LQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISDCENLEYLFDDI-DQLCVLRTIFIA 703 (846)
Q Consensus 626 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~ 703 (846)
|++|++++|.... ++. ..+++|++|++++|.++.++ ..++.+++|++|++++|......+..+ ..+++|+.|+++
T Consensus 101 L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 6666666655322 221 22456666666666666442 345566666666666665444334444 356666666666
Q ss_pred cCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccc
Q 036168 704 DCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLK 783 (846)
Q Consensus 704 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~ 783 (846)
+|. +..++. ...+++|++|++++|..-.. +.. . ....+|+.++++++ .+..+|..+ ..+++|+
T Consensus 178 ~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~l------~~~-~-----~~l~~L~~L~L~~N-~l~~l~~~~--~~l~~L~ 240 (317)
T 3o53_A 178 YNF-IYDVKG-QVVFAKLKTLDLSSNKLAFM------GPE-F-----QSAAGVTWISLRNN-KLVLIEKAL--RFSQNLE 240 (317)
T ss_dssp TSC-CCEEEC-CCCCTTCCEEECCSSCCCEE------CGG-G-----GGGTTCSEEECTTS-CCCEECTTC--CCCTTCC
T ss_pred CCc-Cccccc-ccccccCCEEECCCCcCCcc------hhh-h-----cccCcccEEECcCC-cccchhhHh--hcCCCCC
Confidence 664 334433 23466666666666632210 000 0 01124555666553 344555554 5566666
Q ss_pred eeeccccccc-ccCCcCCCCCCCcceeeccCCccccc
Q 036168 784 TLIIRNCPNF-MALPESLRNLEALETLAIGGCPALSE 819 (846)
Q Consensus 784 ~L~L~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~ 819 (846)
.|+|++|+.. ..+|..+..+++|+.|++.+|+.++.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 6666666555 34555556666666666666655543
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.6e-18 Score=199.44 Aligned_cols=144 Identities=19% Similarity=0.185 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeee
Q 036168 528 RHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLD 606 (846)
Q Consensus 528 r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~ 606 (846)
+.+.+..+... .+|..+. ++++.|.+..+... ...+..|.++++|++|+|++|.+..+ |..|.++++|++|+
T Consensus 34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 55555554433 3444333 78999999866543 34456789999999999999999976 67799999999999
Q ss_pred ccCCCcccccchhhhcCCCCcEEecCCcCCCc-cccccccccCCCcEEEecccccccccccCCCCCCC--CEeccccccC
Q 036168 607 LSGHDKIKKLPNSICELHSLQTVCLGGCRELE-ELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSL--RFLMISDCEN 683 (846)
Q Consensus 607 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 683 (846)
|++|. ++.+|.. .+++|++|++++|.... ..|..+.++++|++|++++|.+... .+..+++| ++|++++|..
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 99886 6688876 89999999999988544 3457899999999999999987642 34444444 6666665543
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.2e-18 Score=195.56 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=102.5
Q ss_pred ceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEec
Q 036168 578 FLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 578 ~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 656 (846)
+|+.|+|++|.+..++ ..|+.+++|++|+|++|......| ++.+++|++|+|++|. +..+| ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECc
Confidence 5555555555555332 345555555555555554222222 5555555555555543 22222 12555555555
Q ss_pred ccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcccccccc-CCCCcCeEecccCcccchh
Q 036168 657 TKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVK-YLSSLETLMLEDCESLTLN 735 (846)
Q Consensus 657 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~~ 735 (846)
+|.++.++. ..+++|++|++++|......|..++.+++|+.|++++|......|..+. .+++|++|+|++|..-..
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 555554332 2345555555555544443444455555555555555544333444443 455555555555531110
Q ss_pred hhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 736 LKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
+. .....+|+.|+++++ .+..+|..+ ..+++|+.|+|++|.. ..+|..+..+++|+.|++++|+
T Consensus 185 -----~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 -----KG-------QVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -----EC-------CCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCC
T ss_pred -----cc-------cccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCC
Confidence 00 001224445555442 233444444 4555666666665533 3355555555666666666555
Q ss_pred c
Q 036168 816 A 816 (846)
Q Consensus 816 ~ 816 (846)
.
T Consensus 249 l 249 (487)
T 3oja_A 249 F 249 (487)
T ss_dssp B
T ss_pred C
Confidence 3
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.4e-18 Score=181.26 Aligned_cols=179 Identities=19% Similarity=0.211 Sum_probs=144.7
Q ss_pred cccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCccccc-chhhhcCCCC
Q 036168 549 SRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKL-PNSICELHSL 626 (846)
Q Consensus 549 ~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L 626 (846)
.++++.|.+..+... .+.+..|..+++|++|+|++|.+..+ |..+..+++|++|++++|..++.+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 457888888755443 23345678899999999999998866 677899999999999988645555 6778899999
Q ss_pred cEEecCCcCCCccccccccccCCCcEEEecccccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 627 QTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 627 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
++|++++|......|..+..+++|++|++++|.+..++. .++.+++|++|++++|......+..+..+++|+.|++++|
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 999999988666567778899999999999999886654 4788999999999997655434446888999999999999
Q ss_pred CCCccccccccCCCCcCeEecccCc
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
......|..+..+++|+.|++++|.
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccCHhHccCcccccEeeCCCCc
Confidence 7666668888899999999999883
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.9e-18 Score=179.35 Aligned_cols=153 Identities=20% Similarity=0.128 Sum_probs=109.4
Q ss_pred CceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 577 QFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
++|++|++++|.+..++. .+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468888888888876654 6778888888888877544444456788888888888887755555567788888888888
Q ss_pred cccccccccc-cCCCCCCCCEeccccccCcc-cchhhccCCCCcCEEEeecCCCCccccccccCCCCcC----eEecccC
Q 036168 656 STKQKSLLES-GIGCLSSLRFLMISDCENLE-YLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLE----TLMLEDC 729 (846)
Q Consensus 656 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~----~L~l~~~ 729 (846)
++|.+..++. .++.+++|++|++++|.... .+|..+..+++|+.|++++|......+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8888775544 57778888888888776544 2577778888888888888754433344555555555 6777766
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=201.03 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=200.8
Q ss_pred eeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeee
Q 036168 527 VRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLD 606 (846)
Q Consensus 527 ~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~ 606 (846)
++.+.+.....-....+..+..+++|++|.+..+... .++..+..+ +|+.|++++|.+..+|. ..+++|++|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~ 331 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLT 331 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEe
Confidence 4555554432212234566778889999988754332 133345666 89999999999887775 5788999999
Q ss_pred ccCCCcccccchhhhcCCCCcEEecCCcCCCccc--cccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCc
Q 036168 607 LSGHDKIKKLPNSICELHSLQTVCLGGCRELEEL--PKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENL 684 (846)
Q Consensus 607 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 684 (846)
+++|......+. ..+++|++|++++|...... |..+..+++|++|++++|.+..++..+..+++|++|++++|...
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 998875555543 78899999999998744332 67788999999999999999877777889999999999997755
Q ss_pred ccch-hhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccC
Q 036168 685 EYLF-DDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEG 763 (846)
Q Consensus 685 ~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~ 763 (846)
...+ ..+..+++|+.|++++|......|..+..+++|++|++++|.... ...+ .......+|+.|++++
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~p------~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLP------DIFTELRNLTFLDLSQ 479 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEEC------SCCTTCTTCCEEECTT
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----ccch------hhhhcccCCCEEECCC
Confidence 5444 467889999999999997766778888999999999999985221 0011 1111234788899988
Q ss_pred CCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccc
Q 036168 764 LPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPAL 817 (846)
Q Consensus 764 ~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 817 (846)
+.-....|.++ ..+++|++|+|++|...+..|..+..+++|+.|++++||--
T Consensus 480 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 480 CQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp SCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCChhhh--hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 65433336666 78999999999999766666667889999999999999743
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=3.2e-19 Score=188.55 Aligned_cols=219 Identities=15% Similarity=0.130 Sum_probs=150.7
Q ss_pred eeEEEeCCCChh--hhhhhhc-------ccCccCeeeccCCCcccccchhh--hcCCCCcEEecCCcCCCcccccccccc
Q 036168 579 LRVIDLSDSAIE--VLSREIG-------NLKHLRYLDLSGHDKIKKLPNSI--CELHSLQTVCLGGCRELEELPKDIRYL 647 (846)
Q Consensus 579 L~~L~L~~~~~~--~l~~~~~-------~l~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~l 647 (846)
|+.|+|++|.+. .+|..+. ++++|++|+|++|.....+|..+ ..+++|++|++++|.... .|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence 777788888774 3555544 68888888888887666777765 788888888888877444 47777766
Q ss_pred -----CCCcEEEeccccccccc-ccCCCCCCCCEeccccccCccc--chhhc--cCCCCcCEEEeecCCCCc--cccc-c
Q 036168 648 -----VNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISDCENLEY--LFDDI--DQLCVLRTIFIADCPRLI--SLPP-A 714 (846)
Q Consensus 648 -----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~l~~-~ 714 (846)
++|++|++++|.+..++ ..++.+++|++|++++|..... ++..+ ..+++|+.|++++|.... .++. .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 88888888888888555 6788888888888888775543 34444 788888888888885331 2332 2
Q ss_pred ccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccc
Q 036168 715 VKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFM 794 (846)
Q Consensus 715 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~ 794 (846)
+..+++|++|++++|..... .+.. ......+|+.|+++++ .+..+|.++ . ++|++|+|++|+. +
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~-----~~~~-----~~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N~l-~ 287 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDA-----AGAP-----SCDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYNRL-D 287 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSS-----CCCS-----CCCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSSCC-C
T ss_pred HhcCCCCCEEECCCCcCCcc-----cchh-----hhhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCCCC-C
Confidence 35678888888888842210 0000 0011236777777764 344666655 2 7888888888754 4
Q ss_pred cCCcCCCCCCCcceeeccCCc
Q 036168 795 ALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 795 ~lp~~~~~l~~L~~L~l~~c~ 815 (846)
.+|. +..+++|++|++++|+
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTCT
T ss_pred CChh-HhhCCCCCEEeccCCC
Confidence 4565 7788888888888875
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=5.7e-18 Score=198.46 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=99.3
Q ss_pred CCCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccC
Q 036168 522 SIPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLK 600 (846)
Q Consensus 522 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~ 600 (846)
.+|..+++|.+..+.... -.+..+.++++|+.|.+..+... .+.+.+|.++++|++|+|++|.+..+|. .|.+++
T Consensus 49 ~lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 467788999888776542 12346788899999998865442 3445678888999999999998887764 578888
Q ss_pred ccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCc-cccccccccCCCcEEEeccccc
Q 036168 601 HLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELE-ELPKDIRYLVNLRMFVVSTKQK 660 (846)
Q Consensus 601 ~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~ 660 (846)
+|++|+|++|. ++.+| ..|+++++|++|++++|.... ..|..+..+++|++|++++|.+
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99999998876 44444 457888888888888876433 3567778888888888877654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.8e-19 Score=190.52 Aligned_cols=248 Identities=17% Similarity=0.164 Sum_probs=185.9
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcc-cccchhhh-------cCCCCcEEecCCcCCCccccccc
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKI-KKLPNSIC-------ELHSLQTVCLGGCRELEELPKDI 644 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~~lp~~~~-------~l~~L~~L~l~~~~~~~~~p~~~ 644 (846)
+...++|+.|++++|.+ .+|..+... |+.|+|++|... ..+|..+. .+++|++|++++|.....+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34567889999999999 888777655 999999988652 35676665 79999999999998777788876
Q ss_pred --cccCCCcEEEecccccccccccCCCC-----CCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcc--ccccc
Q 036168 645 --RYLVNLRMFVVSTKQKSLLESGIGCL-----SSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLIS--LPPAV 715 (846)
Q Consensus 645 --~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--l~~~~ 715 (846)
..+++|++|++++|.++..|..++.+ ++|++|++++|......+..++.+++|+.|++++|...+. +|..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 89999999999999999777777666 9999999999887666668899999999999999976554 34444
Q ss_pred --cCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCc-hhhhcCCCCccceeecccccc
Q 036168 716 --KYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELP-QWLLQGSTKTLKTLIIRNCPN 792 (846)
Q Consensus 716 --~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~-~~~~~~~l~~L~~L~L~~~~~ 792 (846)
..+++|++|++++|..-... ........ ...+|+.|+++++.-....| ..+ ..+++|++|+|++|..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPS---GVCSALAA-----ARVQLQGLDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHH---HHHHHHHH-----TTCCCSEEECTTSCCCSSCCCSCC--CCCTTCCEEECTTSCC
T ss_pred HhccCCCCCEEECCCCcCcchH---HHHHHHHh-----cCCCCCEEECCCCcCCcccchhhh--hhcCCCCEEECCCCcc
Confidence 88999999999999533110 00000000 11267777777643222222 222 5679999999999965
Q ss_pred cccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 793 FMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 793 l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
+.+|..+. ++|+.|++++|. ++.. +.+..+++++.+++++|
T Consensus 266 -~~ip~~~~--~~L~~L~Ls~N~-l~~~---------p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 266 -KQVPKGLP--AKLSVLDLSYNR-LDRN---------PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp -SSCCSSCC--SEEEEEECCSSC-CCSC---------CCTTTSCEEEEEECTTC
T ss_pred -Chhhhhcc--CCceEEECCCCC-CCCC---------hhHhhCCCCCEEeccCC
Confidence 58888766 899999999995 3221 23667889999988887
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=186.73 Aligned_cols=249 Identities=16% Similarity=0.135 Sum_probs=183.7
Q ss_pred CceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCcccccc-ccccCCCcEEE
Q 036168 577 QFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKD-IRYLVNLRMFV 654 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~ 654 (846)
++|++|++++|.+..++. .+.++++|++|++++|......|..+.++++|++|++++|.. ..+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 589999999999998776 799999999999999875555567799999999999999874 455554 89999999999
Q ss_pred ecccccccccc--cCCCCCCCCEeccccccCcccc-hhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcc
Q 036168 655 VSTKQKSLLES--GIGCLSSLRFLMISDCENLEYL-FDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCES 731 (846)
Q Consensus 655 l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 731 (846)
+++|.+..+|. .+..+++|++|++++|+.+..+ +..+..+++|+.|++++|......|..+..+++|++|++++|..
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999998876 6889999999999998655555 56789999999999999976666688899999999999999863
Q ss_pred cchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCc-hhh-hcCCCCccceeecccccccc----cCCcCCCCCCC
Q 036168 732 LTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELP-QWL-LQGSTKTLKTLIIRNCPNFM----ALPESLRNLEA 805 (846)
Q Consensus 732 l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~-~~~-~~~~l~~L~~L~L~~~~~l~----~lp~~~~~l~~ 805 (846)
-... ...... ..+|+.++++++. +..++ ..+ .....+.++.++|+++.... .+|..+..+++
T Consensus 211 ~~~~------~~~~~~-----~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 211 ILLL------EIFVDV-----TSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp TTHH------HHHHHH-----TTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred ccch------hhhhhh-----cccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 2210 000001 1256666666542 22221 111 01345677888888775433 46777889999
Q ss_pred cceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 806 LETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 806 L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
|+.|++++|. ++.... ..+.++++++.+++++|
T Consensus 279 L~~L~Ls~N~-l~~i~~-------~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 279 LLELEFSRNQ-LKSVPD-------GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCEEECCSSC-CCCCCT-------TTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCC-CCccCH-------HHHhcCCCCCEEEeeCC
Confidence 9999999995 332211 01345677777777766
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-17 Score=172.43 Aligned_cols=196 Identities=21% Similarity=0.210 Sum_probs=122.6
Q ss_pred ceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccc-cccccCCCcEEEec
Q 036168 578 FLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPK-DIRYLVNLRMFVVS 656 (846)
Q Consensus 578 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 656 (846)
.++.++++++.++.+|..+. ++|++|+|++|......+..|..+++|++|++++|.. ..+|. .+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECC
Confidence 45677777777777766544 5677777777653333334677777777777777663 34443 34677777777777
Q ss_pred ccccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccch
Q 036168 657 TKQKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTL 734 (846)
Q Consensus 657 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~ 734 (846)
+|.+..++. .+..+++|++|++++|......+..+..+++|+.|++++|. +..+|. .+..+++|++|++++|...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-- 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc--
Confidence 777775543 45677777777777766554445556777778888887774 344443 3667777777777776311
Q ss_pred hhhhhcccccccccCCCCCcccceEEccCCCCCCCCch-hhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccC
Q 036168 735 NLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGG 813 (846)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~-~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 813 (846)
.++. .+ ..+++|++|+|++|......+..+..+++|+.|++++
T Consensus 171 ----------------------------------~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 171 ----------------------------------RVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ----------------------------------CCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ----------------------------------EeChhHh--ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 1111 12 4456666666666644333333455666666666666
Q ss_pred Cc
Q 036168 814 CP 815 (846)
Q Consensus 814 c~ 815 (846)
||
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=6.5e-19 Score=186.65 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=178.9
Q ss_pred hHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccc
Q 036168 566 QSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDI 644 (846)
Q Consensus 566 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 644 (846)
...+...+..+++|++|+|++|.+..++ ..+..+++|++|+|++|... ..++ +..+++|++|++++|. +..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEE-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchh-hhhcCCCCEEECcCCc-ccccc---
Confidence 4556667788899999999999998665 67999999999999988744 4444 8999999999999986 44444
Q ss_pred cccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccc-cCCCCcCe
Q 036168 645 RYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAV-KYLSSLET 723 (846)
Q Consensus 645 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~ 723 (846)
..++|++|++++|.+..++. ..+++|++|++++|......+..+..+++|+.|++++|......+..+ ..+++|++
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred -CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 45899999999999987654 347899999999987666556688899999999999997555445555 47899999
Q ss_pred EecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCC
Q 036168 724 LMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNL 803 (846)
Q Consensus 724 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l 803 (846)
|++++|..... +. .....+|+.++++++ .+..+|..+ ..+++|+.|+|++|. ++.+|..+..+
T Consensus 174 L~L~~N~l~~~------~~-------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l 236 (317)
T 3o53_A 174 LNLQYNFIYDV------KG-------QVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFS 236 (317)
T ss_dssp EECTTSCCCEE------EC-------CCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCC
T ss_pred EECCCCcCccc------cc-------ccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCc-ccchhhHhhcC
Confidence 99999953221 11 112347888888875 455677666 788999999999995 45788889999
Q ss_pred CCcceeeccCCccc
Q 036168 804 EALETLAIGGCPAL 817 (846)
Q Consensus 804 ~~L~~L~l~~c~~l 817 (846)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999999854
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.4e-17 Score=172.23 Aligned_cols=188 Identities=18% Similarity=0.120 Sum_probs=92.6
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
+..+++|++|++++|.+..++ .+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 344555555555555544432 3444555555555544322222233444555555555554433222233444555555
Q ss_pred EEeccccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcc
Q 036168 653 FVVSTKQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCES 731 (846)
Q Consensus 653 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 731 (846)
|++++|.++.++.. ++.+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-- 215 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-- 215 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS--
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC--
Confidence 55555544433322 344555555555554333222223344555555555554332222223444455555555444
Q ss_pred cchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCC
Q 036168 732 LTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEA 805 (846)
Q Consensus 732 l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 805 (846)
+-. +.+++|+.|+++.|...+.+|..++.++.
T Consensus 216 ---------------------------------~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 216 ---------------------------------PWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---------------------------------CBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---------------------------------Ccc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 210 45678888888888888888887776654
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1e-17 Score=176.40 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=94.9
Q ss_pred CCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 576 SQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
+++|+.|++++|.+..++ .+..+++|++|+|++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 445555555555555444 35555555555555543 333443 5555555555555544 33333 3555555555555
Q ss_pred cccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchh
Q 036168 656 STKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLN 735 (846)
Q Consensus 656 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~ 735 (846)
++|.+..++. +..+++|++|++++|... .++. +..+++|+.|++++|. +..++. +..+++|+.|++++|..-...
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 5555554432 555555555555554322 2222 4555555555555553 333333 555555555555555311100
Q ss_pred hhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC
Q 036168 736 LKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP 797 (846)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp 797 (846)
. .....+|+.++++++ .+..++. + ..+++|+.|+|++|+. ...|
T Consensus 190 ------~-------l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~l~~N~i-~~~~ 233 (308)
T 1h6u_A 190 ------P-------LASLPNLIEVHLKNN-QISDVSP-L--ANTSNLFIVTLTNQTI-TNQP 233 (308)
T ss_dssp ------G-------GGGCTTCCEEECTTS-CCCBCGG-G--TTCTTCCEEEEEEEEE-ECCC
T ss_pred ------h-------hcCCCCCCEEEccCC-ccCcccc-c--cCCCCCCEEEccCCee-ecCC
Confidence 0 000113344444332 2223332 3 6778888888888864 3344
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.7e-17 Score=167.99 Aligned_cols=199 Identities=16% Similarity=0.208 Sum_probs=131.1
Q ss_pred ceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccch-hhhcCCCCcEEecCCcCCCcccc-ccccccCCCcEEE
Q 036168 578 FLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPN-SICELHSLQTVCLGGCRELEELP-KDIRYLVNLRMFV 654 (846)
Q Consensus 578 ~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 654 (846)
+|+.|++++|.++.+|. .|.++++|++|++++|..++.+|. .|.++++|++|++++|+.+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888876665 577788888888887753555543 67778888888887733344444 4567777888888
Q ss_pred ecccccccccccCCCCCCCC---EeccccccCcccch-hhccCCCCcC-EEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 655 VSTKQKSLLESGIGCLSSLR---FLMISDCENLEYLF-DDIDQLCVLR-TIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~l~~l~~L~-~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
+++|.++.+|. +..+++|+ +|++++|..+..++ ..+..+++|+ .|++++|. +..+|......++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCC
Confidence 88777777665 66677776 77777763444444 3466677777 77777664 3455554333366666666665
Q ss_pred cccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCC-CccceeecccccccccCCcCCCCCCCcce
Q 036168 730 ESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGST-KTLKTLIIRNCPNFMALPESLRNLEALET 808 (846)
Q Consensus 730 ~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l-~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 808 (846)
. .+..+|...+ ..+ ++|+.|+|++|+ ++.+|.. .+++|+.
T Consensus 190 ~-----------------------------------~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 190 K-----------------------------------YLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKE 230 (239)
T ss_dssp T-----------------------------------TCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSE
T ss_pred C-----------------------------------CcccCCHHHh-hccccCCcEEECCCCc-cccCChh--HhccCce
Confidence 2 2223332211 566 899999999985 4567753 6889999
Q ss_pred eeccCCccc
Q 036168 809 LAIGGCPAL 817 (846)
Q Consensus 809 L~l~~c~~l 817 (846)
|++++|..+
T Consensus 231 L~l~~~~~l 239 (239)
T 2xwt_C 231 LIARNTWTL 239 (239)
T ss_dssp EECTTC---
T ss_pred eeccCccCC
Confidence 999988653
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=173.52 Aligned_cols=198 Identities=15% Similarity=0.086 Sum_probs=142.6
Q ss_pred cCCceeEEEeCCCChh-hhhhhh--cccCccCeeeccCCCcccccc----hhhhcCCCCcEEecCCcCCCcccccccccc
Q 036168 575 KSQFLRVIDLSDSAIE-VLSREI--GNLKHLRYLDLSGHDKIKKLP----NSICELHSLQTVCLGGCRELEELPKDIRYL 647 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~-~l~~~~--~~l~~L~~L~L~~~~~~~~lp----~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 647 (846)
.+++|++|++++|.+. ..|..+ ..+++|++|+|++|......| ..+..+++|++|++++|......|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466888999888887 455566 788889999998887554433 334578888999998888655566778888
Q ss_pred CCCcEEEeccccccc---cc--ccCCCCCCCCEeccccccCcccchh----hccCCCCcCEEEeecCCCCccccccccCC
Q 036168 648 VNLRMFVVSTKQKSL---LE--SGIGCLSSLRFLMISDCENLEYLFD----DIDQLCVLRTIFIADCPRLISLPPAVKYL 718 (846)
Q Consensus 648 ~~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~l~~~~~~l 718 (846)
++|++|++++|.+.. ++ ..++.+++|++|++++|.. +.++. .++.+++|+.|++++|......|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 889999988887642 22 2346788888888888754 33333 24677888888888886555557666655
Q ss_pred ---CCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeeccccccccc
Q 036168 719 ---SSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMA 795 (846)
Q Consensus 719 ---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~ 795 (846)
++|++|++++|. +..+|..+ .++|++|+|++|.. +.
T Consensus 248 ~~~~~L~~L~Ls~N~------------------------------------l~~lp~~~----~~~L~~L~Ls~N~l-~~ 286 (310)
T 4glp_A 248 MWSSALNSLNLSFAG------------------------------------LEQVPKGL----PAKLRVLDLSSNRL-NR 286 (310)
T ss_dssp CCCTTCCCEECCSSC------------------------------------CCSCCSCC----CSCCSCEECCSCCC-CS
T ss_pred cCcCcCCEEECCCCC------------------------------------CCchhhhh----cCCCCEEECCCCcC-CC
Confidence 588888888772 12334333 26899999999854 45
Q ss_pred CCcCCCCCCCcceeeccCCc
Q 036168 796 LPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 796 lp~~~~~l~~L~~L~l~~c~ 815 (846)
+|. +..+++|+.|++++|+
T Consensus 287 ~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC-TTSCCCCSCEECSSTT
T ss_pred Cch-hhhCCCccEEECcCCC
Confidence 554 6788999999999986
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=5.6e-19 Score=198.34 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=112.6
Q ss_pred CCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcc-hhHHHHHhhccCCceeEEEeCCCChhh-hhhhh-cccC
Q 036168 524 PKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSDSAIEV-LSREI-GNLK 600 (846)
Q Consensus 524 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~l~ 600 (846)
+..++++.+..+..........+..+++|++|.+..+.... ....++..+..+++|++|+|++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34566666666555433344446667777777776544321 122445566667777777777777653 12222 2233
Q ss_pred ----ccCeeeccCCCccc----ccchhhhcCCCCcEEecCCcCCCccccccc-----cccCCCcEEEeccccccc-----
Q 036168 601 ----HLRYLDLSGHDKIK----KLPNSICELHSLQTVCLGGCRELEELPKDI-----RYLVNLRMFVVSTKQKSL----- 662 (846)
Q Consensus 601 ----~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~----- 662 (846)
+|++|+|++|.... .+|..+..+++|++|++++|......+..+ ...++|++|++++|.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777665332 456666777777777777766332222222 124457777777666552
Q ss_pred ccccCCCCCCCCEeccccccCcccchhhcc-----CCCCcCEEEeecCCCCc----cccccccCCCCcCeEecccC
Q 036168 663 LESGIGCLSSLRFLMISDCENLEYLFDDID-----QLCVLRTIFIADCPRLI----SLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 663 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~ 729 (846)
++..+..+++|++|++++|......+..+. .+++|+.|++++|.... .++..+..+++|++|++++|
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 233445556666666666653322222221 24566666666664322 13445555666666666665
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=8.7e-19 Score=191.50 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=126.3
Q ss_pred hhhhhcccccceEEEeccCCCc-chhHHHHHhhccCCceeEEEeCCCChh----hhhhh-------hcccCccCeeeccC
Q 036168 542 FSSLLSDSRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSDSAIE----VLSRE-------IGNLKHLRYLDLSG 609 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~----~l~~~-------~~~l~~L~~L~L~~ 609 (846)
+...+..+++|+.|.+..+... .....+...+.++++|++|+|++|.+. .+|.. +..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4455667778888888754433 112234455777888888888886443 23333 46778888888887
Q ss_pred CCccc----ccchhhhcCCCCcEEecCCcCCCcc----cccccccc---------CCCcEEEecccccc--ccc---ccC
Q 036168 610 HDKIK----KLPNSICELHSLQTVCLGGCRELEE----LPKDIRYL---------VNLRMFVVSTKQKS--LLE---SGI 667 (846)
Q Consensus 610 ~~~~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l---------~~L~~L~l~~~~~~--~~~---~~~ 667 (846)
|.... .+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 76544 3677778888888888888774322 23333444 78888888888775 333 345
Q ss_pred CCCCCCCEeccccccCcc-----cchhhccCCCCcCEEEeecCCCC----ccccccccCCCCcCeEecccCc
Q 036168 668 GCLSSLRFLMISDCENLE-----YLFDDIDQLCVLRTIFIADCPRL----ISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 668 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
..+++|++|++++|.... ..+..+..+++|+.|+|++|... ..+|..+..+++|++|+|++|.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 667788888888875432 12336777888888888887642 5567777788888888888874
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.9e-16 Score=181.21 Aligned_cols=237 Identities=22% Similarity=0.238 Sum_probs=150.7
Q ss_pred CCCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCcc
Q 036168 523 IPKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHL 602 (846)
Q Consensus 523 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L 602 (846)
++..++.+.+..+... .++. .+++|++|.+..+.... + + ..+++|++|+|++|.+..+|. .+++|
T Consensus 59 l~~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~---l-p---~~l~~L~~L~Ls~N~l~~l~~---~l~~L 123 (622)
T 3g06_A 59 LPAHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTS---L-P---VLPPGLLELSIFSNPLTHLPA---LPSGL 123 (622)
T ss_dssp CCTTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSC---C-C---CCCTTCCEEEECSCCCCCCCC---CCTTC
T ss_pred hCCCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCc---C-C---CCCCCCCEEECcCCcCCCCCC---CCCCc
Confidence 3456677777666543 2222 45677777776544321 1 1 156677777777777776665 45677
Q ss_pred CeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEecccccc
Q 036168 603 RYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCE 682 (846)
Q Consensus 603 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 682 (846)
++|++++|. ++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.++.+| ..+++|+.|++++|.
T Consensus 124 ~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 124 CKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC
Confidence 777777664 5555543 3677777777765 444553 2456777777777777665 445777888887765
Q ss_pred CcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEcc
Q 036168 683 NLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVE 762 (846)
Q Consensus 683 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~ 762 (846)
. ..+|. .+++|+.|++++|. +..+|.. +++|++|++++|..-. ++ ....+|+.|+++
T Consensus 193 l-~~l~~---~~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~------lp---------~~l~~L~~L~Ls 249 (622)
T 3g06_A 193 L-ASLPT---LPSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTS------LP---------VLPSELKELMVS 249 (622)
T ss_dssp C-SCCCC---CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSC------CC---------CCCTTCCEEECC
T ss_pred C-CCCCC---ccchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCc------CC---------CCCCcCcEEECC
Confidence 3 33443 24678888887774 4556542 4778888888773211 01 112367777777
Q ss_pred CCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCc
Q 036168 763 GLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 763 ~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
++ .+..+|. .+++|+.|+|++|. ++.+|..+..+++|+.|+|++|+
T Consensus 250 ~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 250 GN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SS-CCSCCCC-----CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC-CCCcCCc-----ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 74 4556663 56788899998885 44778888888899999998887
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=6.9e-17 Score=189.27 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=106.7
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccc-hhhhcCCCCc
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQ 627 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~ 627 (846)
..++.|.+..+... .+.+..|.++++|++|+|++|.++.+++ .|.++++|++|+|++|. ++.+| ..|.++++|+
T Consensus 52 ~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCC
T ss_pred cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCC
Confidence 47899999865542 3445678999999999999999998765 68999999999999986 55555 5689999999
Q ss_pred EEecCCcCCCccccccccccCCCcEEEeccccccc--ccccCCCCCCCCEecccccc
Q 036168 628 TVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL--LESGIGCLSSLRFLMISDCE 682 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 682 (846)
+|++++|......+..++++++|++|++++|.+.. .|..++.+++|++|++++|.
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999987544444568999999999999999873 46778889999999988764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=5.1e-17 Score=168.52 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=157.4
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcE
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQT 628 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 628 (846)
++++.|.+..+... .+.+..|.++++|++|++++|.+..++. .+.++++|++|+|++|......|..+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCC---EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCccc---ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 46888888755443 2233467889999999999999987664 6899999999999998755555678999999999
Q ss_pred EecCCcCCCccccccccccCCCcEEEeccccccc--ccccCCCCCCCCEeccccccCcccchhhccCCCCcC----EEEe
Q 036168 629 VCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL--LESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLR----TIFI 702 (846)
Q Consensus 629 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l 702 (846)
|++++|......+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......+..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9999987555555578999999999999999985 678899999999999999876655556666666666 8999
Q ss_pred ecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcc
Q 036168 703 ADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTL 782 (846)
Q Consensus 703 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L 782 (846)
++|. +..++.......+|+.|++++|. + ..+|...+ ..+++|
T Consensus 185 s~n~-l~~~~~~~~~~~~L~~L~L~~n~-l-----------------------------------~~~~~~~~-~~l~~L 226 (276)
T 2z62_A 185 SLNP-MNFIQPGAFKEIRLKELALDTNQ-L-----------------------------------KSVPDGIF-DRLTSL 226 (276)
T ss_dssp CSSC-CCEECTTSSCSCCEEEEECCSSC-C-----------------------------------SCCCTTTT-TTCCSC
T ss_pred CCCc-ccccCccccCCCcccEEECCCCc-e-----------------------------------eecCHhHh-cccccc
Confidence 9985 55666555556689999998873 1 12222211 567889
Q ss_pred ceeecccccccc
Q 036168 783 KTLIIRNCPNFM 794 (846)
Q Consensus 783 ~~L~L~~~~~l~ 794 (846)
+.|+|++|+...
T Consensus 227 ~~L~l~~N~~~c 238 (276)
T 2z62_A 227 QKIWLHTNPWDC 238 (276)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCcccc
Confidence 999999887543
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.3e-17 Score=185.11 Aligned_cols=216 Identities=15% Similarity=0.039 Sum_probs=160.3
Q ss_pred ccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEec
Q 036168 598 NLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLM 677 (846)
Q Consensus 598 ~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 677 (846)
.+++|++|+|++|......|..|+.+++|++|+|++|......| +..+++|++|++++|.++.++. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 34599999999987666667889999999999999988544444 8999999999999999987764 38999999
Q ss_pred cccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccc
Q 036168 678 ISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLR 757 (846)
Q Consensus 678 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~ 757 (846)
+++|......+ ..+++|+.|++++|......|..+..+++|+.|+|++|..... .+..... ...+|+
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~-----~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-----NFAELAA-----SSDTLE 172 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-----EGGGGGG-----GTTTCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-----ChHHHhh-----hCCccc
Confidence 99987654333 3578999999999976666677889999999999999953321 1111100 123677
Q ss_pred eEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccce
Q 036168 758 KLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQ 837 (846)
Q Consensus 758 ~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~ 837 (846)
.|+++++. +..+|.. ..+++|++|+|++|.. +.+|..+..+++|+.|++++|. ++.. ...+..+++
T Consensus 173 ~L~Ls~N~-l~~~~~~---~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~l--------p~~l~~l~~ 238 (487)
T 3oja_A 173 HLNLQYNF-IYDVKGQ---VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLI--------EKALRFSQN 238 (487)
T ss_dssp EEECTTSC-CCEEECC---CCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEE--------CTTCCCCTT
T ss_pred EEecCCCc-ccccccc---ccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCc-Cccc--------chhhccCCC
Confidence 78887753 4445433 4589999999999965 4566668999999999999986 2221 112445666
Q ss_pred eeeCCCCCC
Q 036168 838 VCLEDESDN 846 (846)
Q Consensus 838 l~~~~~~~n 846 (846)
++.+++++|
T Consensus 239 L~~L~l~~N 247 (487)
T 3oja_A 239 LEHFDLRGN 247 (487)
T ss_dssp CCEEECTTC
T ss_pred CCEEEcCCC
Confidence 777777665
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.9e-16 Score=173.30 Aligned_cols=213 Identities=22% Similarity=0.257 Sum_probs=105.7
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
|.++++|++|++++|.+..+|..+ .+|++|++++|. +..+| .++.+++|++|++++|. +..+|... ++|+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCE
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccE
Confidence 445555555555555554444322 345555555443 33344 35555555555555544 22233221 35555
Q ss_pred EEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCccc
Q 036168 653 FVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESL 732 (846)
Q Consensus 653 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 732 (846)
|++++|.+..+| .++.+++|++|++++|.. ..+|. .+++|+.|++++|. +..+|.. +++|+.|++++|..-
T Consensus 220 L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l-~~l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILEELP-ELQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS
T ss_pred EECcCCcCCccc-ccCCCCCCCEEECCCCcC-Ccccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCccC
Confidence 555555555444 355555666666655432 22332 23556666665553 3334432 256666666666321
Q ss_pred chhhhhhcccc-ccc--ccCCC----C-CcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCC
Q 036168 733 TLNLKIEMEGE-ESH--CDRNK----T-RLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLE 804 (846)
Q Consensus 733 ~~~~~~~~~~~-~~~--~~~~l----~-~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 804 (846)
... ..+.. ... ....+ . ..+|+.++++++ .+..+| ..+++|++|++++|. ++.+|. .++
T Consensus 291 ~l~---~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp-----~~~~~L~~L~L~~N~-l~~lp~---~l~ 357 (454)
T 1jl5_A 291 GLS---ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP-----ALPPRLERLIASFNH-LAEVPE---LPQ 357 (454)
T ss_dssp EES---CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC---CCT
T ss_pred ccc---CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc-----ccCCcCCEEECCCCc-cccccc---hhh
Confidence 100 00000 000 00000 0 025666666663 344455 335788888888884 456776 478
Q ss_pred CcceeeccCCcc
Q 036168 805 ALETLAIGGCPA 816 (846)
Q Consensus 805 ~L~~L~l~~c~~ 816 (846)
+|+.|++++|+-
T Consensus 358 ~L~~L~L~~N~l 369 (454)
T 1jl5_A 358 NLKQLHVEYNPL 369 (454)
T ss_dssp TCCEEECCSSCC
T ss_pred hccEEECCCCCC
Confidence 899999988863
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1e-17 Score=179.47 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=103.5
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhh--hhhhhcccCccCeeeccCCCcccccchhhhcCCCCc
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEV--LSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQ 627 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 627 (846)
++++.+.+..+..... .+ .+.++++|++|+|++|.+.. ++..+..+++|++|+|++|......|..++.+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~---~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP---LA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSC---CC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred ccceEEEcCCcccccc---ch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 5666666553322111 11 13356667777777766652 556666667777777776654445566666677777
Q ss_pred EEecCCcCCCc--cccccccccCCCcEEEeccc-cccc--ccccCCCCC-CCCEecccccc-Cc--ccchhhccCCCCcC
Q 036168 628 TVCLGGCRELE--ELPKDIRYLVNLRMFVVSTK-QKSL--LESGIGCLS-SLRFLMISDCE-NL--EYLFDDIDQLCVLR 698 (846)
Q Consensus 628 ~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~l~~~~-~~--~~~~~~l~~l~~L~ 698 (846)
+|++++|..++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..++..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 77777664333 24555666667777777666 5552 344455666 67777776663 12 33455556666777
Q ss_pred EEEeecCCCC-ccccccccCCCCcCeEecccCc
Q 036168 699 TIFIADCPRL-ISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 699 ~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
.|++++|..+ ...+..+..+++|++|++++|.
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7777666532 3444556666667777766664
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=8.6e-17 Score=166.21 Aligned_cols=195 Identities=18% Similarity=0.160 Sum_probs=143.1
Q ss_pred ccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEE
Q 036168 574 SKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMF 653 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 653 (846)
..+++|+.|++++|.+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45678889999988887664 47888999999999876 44454 58888999999999887554445557888999999
Q ss_pred Eeccccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCccc
Q 036168 654 VVSTKQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESL 732 (846)
Q Consensus 654 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l 732 (846)
++++|.+..++.. ++.+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999888866544 688889999999887655444445678888999999888644333444678888888888887311
Q ss_pred chhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeecc
Q 036168 733 TLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIG 812 (846)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 812 (846)
+ ..+..+ ..+++|+.|+|++|+.. +.+++|+.|+++
T Consensus 195 ------------------------------~-----~~~~~~--~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 195 ------------------------------S-----VPDGVF--DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEW 230 (272)
T ss_dssp ------------------------------C-----CCTTTT--TTCTTCCEEECCSSCBC-------CCTTTTHHHHHH
T ss_pred ------------------------------c-----cCHHHH--hCCcCCCEEEccCCCcc-------ccCcHHHHHHHH
Confidence 1 111223 67889999999999654 345678888887
Q ss_pred CCc
Q 036168 813 GCP 815 (846)
Q Consensus 813 ~c~ 815 (846)
.|.
T Consensus 231 ~n~ 233 (272)
T 3rfs_A 231 INK 233 (272)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=1.2e-15 Score=164.21 Aligned_cols=296 Identities=14% Similarity=0.134 Sum_probs=181.6
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc------c
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF------E 234 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 234 (846)
..+..|+||++++++|.+++.. . +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 4567799999999999999854 1 589999999999999999998742 2 6777765442 4
Q ss_pred HHHHHHHHHHHhcC----------------CCC--CCCCHHHHHHHHHHHhcC-ceEEEEeeccCCCCh-------hhHH
Q 036168 235 QRQIMTKIIKSITG----------------QNP--GDLDTDQLRRILRDRLNG-EIYLLVMDDVWNEDP-------KVWD 288 (846)
Q Consensus 235 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~ 288 (846)
...++..+...+.. ... ...+..++.+.+.+.... ++++||+||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55566666554421 000 123456666666665543 389999999976432 3334
Q ss_pred HHHHhhCCCCCCcEEEEeCCChHHHHHh----CC----C-CCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHH
Q 036168 289 ELKSLLLGSAKGSKILVTTRSNKVASIM----GT----M-RGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGE 359 (846)
Q Consensus 289 ~l~~~l~~~~~gs~iiiTtR~~~~~~~~----~~----~-~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~ 359 (846)
.+...+... ++.++|+|++........ .. . .....+.+.+|+.+|+.+++.......+.... .+.+.
T Consensus 154 ~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIE 229 (350)
T ss_dssp HHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHH
T ss_pred HHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHH
Confidence 444433322 467899999886542211 10 1 11236899999999999999876432222212 35678
Q ss_pred HHHHhhCCCchHHHHHhhhhcCCCCHHHH-HHHHhhhhccccccCCCchHHHHHhHhcC---ChhhHHHHhHhccCCCCc
Q 036168 360 EIVKKCGGIPLAVRTLGSLLYGSTDEHYW-EYVRDNEIWKLEQKKNDILPALRLSYDQL---PPHLKQCFAYCSIFPKDY 435 (846)
Q Consensus 360 ~i~~~~~g~Plai~~~~~~l~~~~~~~~w-~~~~~~~~~~~~~~~~~v~~~l~~sy~~L---~~~~k~~f~~~a~fp~~~ 435 (846)
+|++.++|+|+++..++..+....+...+ ..+.+ .+...+.-.+..+ ++..+..+..+|. +
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 99999999999999998764321121111 11111 0111111122223 7889999999998 2
Q ss_pred ccChhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHHH
Q 036168 436 DFTSVLLIRFWMAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLAQ 506 (846)
Q Consensus 436 ~~~~~~li~~w~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~~ 506 (846)
..+...+........ .+. .......+++.|.+.++|..... .+...|++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~------~~~-~~~~~~~~l~~L~~~gli~~~~~---------~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG------TKI-PEPRLYALLENLKKMNWIVEEDN---------TYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT------CCC-CHHHHHHHHHHHHHTTSEEEETT---------EEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHhCCCEEecCC---------EEEEecHHHHHHHc
Confidence 234444444332211 011 23456788999999999976521 23445778877653
No 82
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.70 E-value=5.4e-18 Score=146.60 Aligned_cols=79 Identities=27% Similarity=0.445 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 036168 8 LEKLMEKLGSRAFEELSLFYCVKNDAEKLKETLTTVKCVVLDAEEK--QVHNHQLRDWLEKLKDACYDAEDLLDDFEVEA 85 (846)
Q Consensus 8 ~~~~~~kl~~~~~~e~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~ 85 (846)
++++++||++++.+|+.++.|+++|+++|+++|++|++||.+|+.+ +..++.++.|+++||+++||+||+||+|.++.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999987 55799999999999999999999999998865
Q ss_pred H
Q 036168 86 L 86 (846)
Q Consensus 86 ~ 86 (846)
.
T Consensus 83 ~ 83 (115)
T 3qfl_A 83 D 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=7.7e-16 Score=176.13 Aligned_cols=253 Identities=21% Similarity=0.192 Sum_probs=176.4
Q ss_pred eeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeee
Q 036168 527 VRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLD 606 (846)
Q Consensus 527 ~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~ 606 (846)
++.+.+..+... .++..+. ++|+.|.+..+.... +. ..+++|++|+|++|.++.+|. .+++|++|+
T Consensus 42 l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~---lp----~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 42 NAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTS---LP----ALPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSC---CC----CCCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCC---CC----CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 455555544433 3343333 688999888655431 11 157889999999999888876 678999999
Q ss_pred ccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCccc
Q 036168 607 LSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEY 686 (846)
Q Consensus 607 L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 686 (846)
|++|. ++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.++.+|. .+++|+.|++++|.. ..
T Consensus 108 Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l-~~ 175 (622)
T 3g06_A 108 IFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQL-TS 175 (622)
T ss_dssp ECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SC
T ss_pred CcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCC-CC
Confidence 99775 666666 57889999999876 5567754 4889999999998887764 356788899988654 44
Q ss_pred chhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCC
Q 036168 687 LFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPP 766 (846)
Q Consensus 687 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~ 766 (846)
+| ..+++|+.|++++|. +..+|.. +++|+.|++++|..-. ++. ...+|+.|+++++ .
T Consensus 176 l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~------l~~---------~~~~L~~L~Ls~N-~ 232 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTS------LPA---------LPSGLKELIVSGN-R 232 (622)
T ss_dssp CC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSS------CCC---------CCTTCCEEECCSS-C
T ss_pred Cc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccc------cCC---------CCCCCCEEEccCC-c
Confidence 55 467889999999885 5566653 4788999999884221 010 0136777777764 4
Q ss_pred CCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 767 LLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 767 l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
+..+| ..+++|+.|+|++|. ++.+|. .+++|+.|+|++|. ++.. ...+.++++++.+++++|
T Consensus 233 L~~lp-----~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~l--------p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 233 LTSLP-----VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRL--------PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CSCCC-----CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSC--------CGGGGGSCTTCEEECCSC
T ss_pred cCcCC-----CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcC--------CHHHhhccccCEEEecCC
Confidence 55566 456889999999984 556776 67889999999884 3321 123667777777777776
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.3e-18 Score=192.02 Aligned_cols=282 Identities=16% Similarity=0.129 Sum_probs=176.9
Q ss_pred ceeEEEEEcCCCCc---chhhhhhcccccceEEEeccCCCcc--hhHHHHHhhccCCceeEEEeCCCChhh-----hhhh
Q 036168 526 RVRHLSFVGANTSI---NDFSSLLSDSRRARTILFPINDEKT--NQSILTSCISKSQFLRVIDLSDSAIEV-----LSRE 595 (846)
Q Consensus 526 ~~r~l~~~~~~~~~---~~~~~~~~~~~~lr~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~ 595 (846)
.++++.+..+.... ..++..+..+++|+.|.+..+.... ...+....+...++|+.|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57777777665442 2346667788888888887544321 112222233446678888888887763 4566
Q ss_pred hcccCccCeeeccCCCcccccchhhh-----cCCCCcEEecCCcCCCcc----ccccccccCCCcEEEecccccccc---
Q 036168 596 IGNLKHLRYLDLSGHDKIKKLPNSIC-----ELHSLQTVCLGGCRELEE----LPKDIRYLVNLRMFVVSTKQKSLL--- 663 (846)
Q Consensus 596 ~~~l~~L~~L~L~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~--- 663 (846)
+..+++|++|++++|......+..+. .+++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77788888888888764333333332 356888888888864432 566677888888888888877632
Q ss_pred ---cccCCCCCCCCEeccccccCccc----chhhccCCCCcCEEEeecCCCCcc----ccccc-cCCCCcCeEecccCcc
Q 036168 664 ---ESGIGCLSSLRFLMISDCENLEY----LFDDIDQLCVLRTIFIADCPRLIS----LPPAV-KYLSSLETLMLEDCES 731 (846)
Q Consensus 664 ---~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~-~~l~~L~~L~l~~~~~ 731 (846)
+..+..+++|++|++++|..... ++..+..+++|+.|++++|..... +...+ ...++|++|++++|..
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22334578888888888754432 566677788888888888854322 22222 2236888888888852
Q ss_pred cchhhhhhcccccccccCCCCCcccceEEccCCCCCCCC-chhhh---cCCCCccceeecccccccc----cCCcCCCCC
Q 036168 732 LTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLL---QGSTKTLKTLIIRNCPNFM----ALPESLRNL 803 (846)
Q Consensus 732 l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l-~~~~~---~~~l~~L~~L~L~~~~~l~----~lp~~~~~l 803 (846)
-. ......+. ......+|+.++++++. +... +..+. ....++|++|+|++|.... .+|..+..+
T Consensus 326 ~~-~~~~~l~~------~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 326 TA-ACCSHFSS------VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp BG-GGHHHHHH------HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred ch-HHHHHHHH------HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 21 10000000 00012367778887752 2221 11111 1236799999999996553 677777788
Q ss_pred CCcceeeccCCc
Q 036168 804 EALETLAIGGCP 815 (846)
Q Consensus 804 ~~L~~L~l~~c~ 815 (846)
++|++|++++|+
T Consensus 398 ~~L~~L~l~~N~ 409 (461)
T 1z7x_W 398 HSLRELDLSNNC 409 (461)
T ss_dssp CCCCEEECCSSS
T ss_pred CCccEEECCCCC
Confidence 999999999986
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=4.5e-16 Score=171.74 Aligned_cols=304 Identities=13% Similarity=0.053 Sum_probs=182.7
Q ss_pred cCCccccchHHHHHHHHHH-hcCCCCCCcceeEEEE--ecCCCCcHHHHHHHHhcchhhhc---cCC-eeEEEEecCccc
Q 036168 162 LPSEIIGRDEDREKIIELL-MQTNDGESETVSVIPI--VGLGGLGKTALAKLVYNDQSVQE---HFK-LKIWICVSEDFE 234 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~i~I--~G~gGiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~~~~~~ 234 (846)
.+..++||++++++|.+++ .....+.....+.+.| +|++|+||||||+.+++...... .+. .++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4578999999999999988 5321110012345666 99999999999999997532211 122 356887777778
Q ss_pred HHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEeeccCCC------ChhhHHHHHHhhCCC---C--CC
Q 036168 235 QRQIMTKIIKSITGQNP-GDLDTDQLRRILRDRLN--GEIYLLVMDDVWNE------DPKVWDELKSLLLGS---A--KG 300 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~---~--~g 300 (846)
...++..++..++.... ...+...+...+.+.+. +++++|||||+|.. +...+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 88999999998854322 23345666677776664 67999999999763 224444443333221 2 34
Q ss_pred cEEEEeCCChHHHHHhC-------CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhC------C
Q 036168 301 SKILVTTRSNKVASIMG-------TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCG------G 367 (846)
Q Consensus 301 s~iiiTtR~~~~~~~~~-------~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~------g 367 (846)
..||+||+...+..... ... ...+.+.+++.++++++|...+...... ..-..+.+..|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 45888887665432211 111 1139999999999999998664321111 1112356788999999 9
Q ss_pred CchHHHHHhhhhc-----CC---CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCC--CCccc
Q 036168 368 IPLAVRTLGSLLY-----GS---TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFP--KDYDF 437 (846)
Q Consensus 368 ~Plai~~~~~~l~-----~~---~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~~ 437 (846)
.|..+..++.... .. -+.+.+........ . ...+.-++..||++.+.++..++.+. .+..+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9976655543221 11 11222222211100 0 22344466789999999999888753 23345
Q ss_pred ChhHHHHHHH--H---cCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccc
Q 036168 438 TSVLLIRFWM--A---HGLLQSPNENEEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 438 ~~~~li~~w~--a---~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
+...+...+. + .|. ..........+++.|.+.++|....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNV------KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCC------CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 5544444332 1 121 1112345667899999999997654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.2e-16 Score=162.27 Aligned_cols=150 Identities=22% Similarity=0.235 Sum_probs=98.8
Q ss_pred CceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 577 QFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
++++.|+|++|.+..+ +..|..+++|++|+|++|. ++.+|.. +.+++|++|++++|. +..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 4677777777777644 3456777777777777664 4445442 667777777777765 4566766777777777777
Q ss_pred ccccccccc-ccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcccccc-ccCCCCcCeEecccCc
Q 036168 656 STKQKSLLE-SGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPA-VKYLSSLETLMLEDCE 730 (846)
Q Consensus 656 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 730 (846)
++|.++.++ ..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|.. +..+++|+.|+|++|.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc
Confidence 777777554 446777777777777765444334445677777777777764 3455443 4667777777777763
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=4.4e-16 Score=163.80 Aligned_cols=169 Identities=22% Similarity=0.308 Sum_probs=119.7
Q ss_pred cccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCC
Q 036168 547 SDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSL 626 (846)
Q Consensus 547 ~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L 626 (846)
..+++|+.|.+..+..... + .+..+++|++|+|++|.+..++. +..+++|++|+|++|. ++.+| .+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTC
T ss_pred HHcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCC
Confidence 3456777777765443221 1 35677888888888888877766 7778888888888775 55555 47778888
Q ss_pred cEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 627 QTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 627 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
++|++++|. +..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|.
T Consensus 110 ~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCCCc
Confidence 888888876 444543 7778888888888888776654 77788888888887644 34444 7778888888888774
Q ss_pred CCccccccccCCCCcCeEecccCc
Q 036168 707 RLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 707 ~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
+..++. +..+++|+.|++++|.
T Consensus 185 -l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 185 -ISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp -CCCCGG-GGGCTTCCEEECTTSC
T ss_pred -cCcChh-hcCCCCCCEEEccCCc
Confidence 445544 6777888888888874
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=3.5e-17 Score=175.22 Aligned_cols=236 Identities=21% Similarity=0.173 Sum_probs=169.8
Q ss_pred CceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccc-cchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEe
Q 036168 577 QFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKK-LPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVV 655 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 655 (846)
++++.|++++|.+...+..+..+++|++|+|++|..... +|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 789999999999887777778899999999998874444 7888899999999999998766677888888999999999
Q ss_pred ccc-ccc--cccccCCCCCCCCEeccccccCccc--chhhccCCC-CcCEEEeecCC-CC--ccccccccCCCCcCeEec
Q 036168 656 STK-QKS--LLESGIGCLSSLRFLMISDCENLEY--LFDDIDQLC-VLRTIFIADCP-RL--ISLPPAVKYLSSLETLML 726 (846)
Q Consensus 656 ~~~-~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~-~L~~L~l~~~~-~~--~~l~~~~~~l~~L~~L~l 726 (846)
++| .++ .++..+..+++|++|++++|..+.. ++..+..++ +|+.|++++|. .+ ..+|..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 998 566 3566678899999999999844443 567788899 99999999984 23 456777788999999999
Q ss_pred ccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCc-hhhhcCCCCccceeecccccccccCCc-CCCCC-
Q 036168 727 EDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELP-QWLLQGSTKTLKTLIIRNCPNFMALPE-SLRNL- 803 (846)
Q Consensus 727 ~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~-~~~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l- 803 (846)
++|..++......+ ....+|+.|++++|..+.... ..+ ..+++|+.|+|++| ++. .+..+
T Consensus 230 ~~~~~l~~~~~~~l----------~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~-----i~~~~~~~l~ 292 (336)
T 2ast_B 230 SDSVMLKNDCFQEF----------FQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI-----VPDGTLQLLK 292 (336)
T ss_dssp TTCTTCCGGGGGGG----------GGCTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS-----SCTTCHHHHH
T ss_pred CCCCcCCHHHHHHH----------hCCCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEEeccCc-----cCHHHHHHHH
Confidence 99964432111100 112478999999887432211 123 56899999999998 222 22333
Q ss_pred CCcceeeccCCccccccCCCCCCCCCC
Q 036168 804 EALETLAIGGCPALSERCKPQTGEDWP 830 (846)
Q Consensus 804 ~~L~~L~l~~c~~l~~~~~~~~~~~~~ 830 (846)
.+|+.|++++| .++.......+..|.
T Consensus 293 ~~l~~L~l~~n-~l~~~~~~~~~~~~~ 318 (336)
T 2ast_B 293 EALPHLQINCS-HFTTIARPTIGNKKN 318 (336)
T ss_dssp HHSTTSEESCC-CSCCTTCSSCSSTTC
T ss_pred hhCcceEEecc-cCccccCCccccccc
Confidence 24666777544 455544444444333
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.5e-16 Score=159.97 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=88.6
Q ss_pred cceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhh-hcccCccCeeeccCCCcccccchhhhcCCCCcEE
Q 036168 551 RARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSRE-IGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTV 629 (846)
Q Consensus 551 ~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 629 (846)
+++.|.+..+... .+.+..|.++++|++|+|++|.+..+|.. |..+++|++|+|++|......+..+..+++|++|
T Consensus 38 ~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 38 DTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 4555555433321 12223455556666666666655555443 3455666666666554222222334555666666
Q ss_pred ecCCcCCCccccccccccCCCcEEEeccccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCC
Q 036168 630 CLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRL 708 (846)
Q Consensus 630 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 708 (846)
++++|......+..+..+++|++|++++|.+..++.. +..+++|++|++++|......+..+..+++|+.|++++|..
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL- 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC-
Confidence 6665553333334455556666666666655544433 45556666666655543332333455556666666665532
Q ss_pred ccccc-cccCCCCcCeEecccC
Q 036168 709 ISLPP-AVKYLSSLETLMLEDC 729 (846)
Q Consensus 709 ~~l~~-~~~~l~~L~~L~l~~~ 729 (846)
..+|. .+..+++|+.|++++|
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCHHHhccccCCCEEEecCC
Confidence 33332 3455556666666555
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=1.1e-14 Score=157.38 Aligned_cols=295 Identities=14% Similarity=0.125 Sum_probs=173.7
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-----ccH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-----FEQ 235 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~ 235 (846)
..+..|+||++++++|.+ +. . +++.|+|++|+|||||++++++.. .. ..+|+++... .+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCH
T ss_pred CCHHHhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCH
Confidence 345779999999999999 73 2 589999999999999999998742 21 2578877643 233
Q ss_pred HHHHHHHHHHhc-------------CC-------C----C-----CCCCHHHHHHHHHHHhcCceEEEEeeccCCCC---
Q 036168 236 RQIMTKIIKSIT-------------GQ-------N----P-----GDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--- 283 (846)
Q Consensus 236 ~~~~~~i~~~l~-------------~~-------~----~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--- 283 (846)
...+..+...+. .. . . .......+.+.+.+... ++++|||||++..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 444444433221 00 0 0 12344555555554333 48999999997632
Q ss_pred -hhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHh----C---CCC-C-CCcEecCCCChHHHHHHHHHhhccCCCCCCcc
Q 036168 284 -PKVWDELKSLLLGSAKGSKILVTTRSNKVASIM----G---TMR-G-TAGYKLEGLPYESCLSLFMKCAFKEGQHKHPN 353 (846)
Q Consensus 284 -~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~----~---~~~-~-~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~ 353 (846)
...+..+...... .++.++|+|++........ . ... . ...+.+.+|+.+++.+++.......+....+
T Consensus 154 ~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~- 231 (357)
T 2fna_A 154 GVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD- 231 (357)
T ss_dssp TCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-
T ss_pred chhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-
Confidence 2233334333322 2467899999987542211 1 011 1 2468999999999999998754322222111
Q ss_pred hHHHHHHHHHhhCCCchHHHHHhhhhcCCCCHHHHHH-HHhhhhccccccCCCchHHHH-HhH--hcCChhhHHHHhHhc
Q 036168 354 LVKIGEEIVKKCGGIPLAVRTLGSLLYGSTDEHYWEY-VRDNEIWKLEQKKNDILPALR-LSY--DQLPPHLKQCFAYCS 429 (846)
Q Consensus 354 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~k~~f~~~a 429 (846)
...|++.|+|+|+++..++..+........|-. +.+.. ...+...+. +.+ ..+++..+..+..+|
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 178999999999999999877643222222211 11000 000111111 111 167889999999999
Q ss_pred cCCCCcccChhHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccCCCCCCCcceeEEEEchHHHHHH
Q 036168 430 IFPKDYDFTSVLLIRFWM-AHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTNGMLPEGFEIFFFKMHDLMHDLA 505 (846)
Q Consensus 430 ~fp~~~~~~~~~li~~w~-a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~~~mH~lv~~~~ 505 (846)
+ +. +...+..... ..|. .........+++.|.+.++|..... .+...|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~~---------~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEGE---------KYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESSS---------CEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecCC---------EEEecCHHHHHhh
Confidence 8 22 3444432211 1121 0123456788999999999976532 1334678888763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=164.03 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=155.5
Q ss_pred CceeEEEeCCCChh--hhhh--hhcccCccCeeeccCCCcccccchhh--hcCCCCcEEecCCcCCCcccc----ccccc
Q 036168 577 QFLRVIDLSDSAIE--VLSR--EIGNLKHLRYLDLSGHDKIKKLPNSI--CELHSLQTVCLGGCRELEELP----KDIRY 646 (846)
Q Consensus 577 ~~L~~L~L~~~~~~--~l~~--~~~~l~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~~p----~~~~~ 646 (846)
..++.|.+.++.+. .+.. .+..+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45777888887764 1211 23345779999999988777788777 889999999999988655444 34457
Q ss_pred cCCCcEEEeccccccccc-ccCCCCCCCCEeccccccCccc--ch--hhccCCCCcCEEEeecCCCCccccc----cccC
Q 036168 647 LVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISDCENLEY--LF--DDIDQLCVLRTIFIADCPRLISLPP----AVKY 717 (846)
Q Consensus 647 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~l~~----~~~~ 717 (846)
+++|++|++++|.+..++ ..++.+++|++|++++|..... ++ ..++.+++|++|++++|. ++.++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 889999999999988554 5778899999999999875432 22 223678899999999885 444443 2467
Q ss_pred CCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhh-cCCCCccceeecccccccccC
Q 036168 718 LSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL-QGSTKTLKTLIIRNCPNFMAL 796 (846)
Q Consensus 718 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~-~~~l~~L~~L~L~~~~~l~~l 796 (846)
+++|++|+|++|.... ..|..+. ...+++|++|+|++|.. +.+
T Consensus 223 l~~L~~L~Ls~N~l~~-----------------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l-~~l 266 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA-----------------------------------TVNPSAPRCMWSSALNSLNLSFAGL-EQV 266 (310)
T ss_dssp TCCCSSEECTTSCCCC-----------------------------------CCCSCCSSCCCCTTCCCEECCSSCC-CSC
T ss_pred CCCCCEEECCCCCCCc-----------------------------------cchhhHHhccCcCcCCEEECCCCCC-Cch
Confidence 7899999999884111 1121110 02347999999999965 478
Q ss_pred CcCCCCCCCcceeeccCCccccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 797 PESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 797 p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
|..+. ++|+.|+|++|. ++.. +....+++++.+++++|
T Consensus 267 p~~~~--~~L~~L~Ls~N~-l~~~---------~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 267 PKGLP--AKLRVLDLSSNR-LNRA---------PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCC--SCCSCEECCSCC-CCSC---------CCTTSCCCCSCEECSST
T ss_pred hhhhc--CCCCEEECCCCc-CCCC---------chhhhCCCccEEECcCC
Confidence 87664 899999999995 2211 22345677888888776
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.3e-16 Score=174.10 Aligned_cols=257 Identities=16% Similarity=0.099 Sum_probs=182.2
Q ss_pred ceeEEEEEcCCCCcc---hhhhhhcccccceEEEeccCCCcc-------hhHHHHHhhccCCceeEEEeCCCChhh----
Q 036168 526 RVRHLSFVGANTSIN---DFSSLLSDSRRARTILFPINDEKT-------NQSILTSCISKSQFLRVIDLSDSAIEV---- 591 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~---~~~~~~~~~~~lr~l~l~~~~~~~-------~~~~~~~~~~~~~~L~~L~L~~~~~~~---- 591 (846)
.++++.+..+..... .+...+..+++|+.|.+..+.... ....+...+.++++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 477888776654422 233457789999999998653321 122344557899999999999999875
Q ss_pred -hhhhhcccCccCeeeccCCCcccc----cchhhhcC---------CCCcEEecCCcCCC-cccc---ccccccCCCcEE
Q 036168 592 -LSREIGNLKHLRYLDLSGHDKIKK----LPNSICEL---------HSLQTVCLGGCREL-EELP---KDIRYLVNLRMF 653 (846)
Q Consensus 592 -l~~~~~~l~~L~~L~L~~~~~~~~----lp~~~~~l---------~~L~~L~l~~~~~~-~~~p---~~~~~l~~L~~L 653 (846)
+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|... ..+| ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 788899999999999999875432 34444455 99999999998854 3444 467789999999
Q ss_pred Eecccccc------cccccCCCCCCCCEeccccccCc----ccchhhccCCCCcCEEEeecCCCCcc----ccccc--cC
Q 036168 654 VVSTKQKS------LLESGIGCLSSLRFLMISDCENL----EYLFDDIDQLCVLRTIFIADCPRLIS----LPPAV--KY 717 (846)
Q Consensus 654 ~l~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~----l~~~~--~~ 717 (846)
++++|.+. ..+..+..+++|++|++++|... ..+|..+..+++|+.|+|++|..... +|..+ ..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 99999987 34447889999999999998764 56788899999999999999975433 56666 34
Q ss_pred CCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC
Q 036168 718 LSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP 797 (846)
Q Consensus 718 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp 797 (846)
+++|++|+|++|..-.. ....+|..+. ..+++|++|+|++|+.....+
T Consensus 273 ~~~L~~L~L~~n~i~~~-------------------------------g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELD-------------------------------AVRTLKTVID-EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SCCCCEEECCSSCCBHH-------------------------------HHHHHHHHHH-HHCTTCCEEECTTSBSCTTSH
T ss_pred CCCeEEEECcCCcCCHH-------------------------------HHHHHHHHHH-hcCCCceEEEccCCcCCcchh
Confidence 89999999999842110 0002333331 346888888888887654442
Q ss_pred --cCC-CCCCCcceeeccCC
Q 036168 798 --ESL-RNLEALETLAIGGC 814 (846)
Q Consensus 798 --~~~-~~l~~L~~L~l~~c 814 (846)
..+ ..++.++.+++...
T Consensus 321 ~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 321 VVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHHHHhhhcCcchhhhc
Confidence 111 23455555555443
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=6.2e-17 Score=187.86 Aligned_cols=136 Identities=12% Similarity=0.010 Sum_probs=68.7
Q ss_pred hhhhcccccceEEEeccCCCc-chhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcc---cccch
Q 036168 543 SSLLSDSRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKI---KKLPN 618 (846)
Q Consensus 543 ~~~~~~~~~lr~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~---~~lp~ 618 (846)
......+++|++|.+..+... .....++..+.++++|+.|++++|.+..+|..+..+++|++|+++++... ...+.
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 344455666777766544332 22344555566677777777777776666666666677777766532211 11122
Q ss_pred hhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccc--cccccCCCCCCCCEeccc
Q 036168 619 SICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKS--LLESGIGCLSSLRFLMIS 679 (846)
Q Consensus 619 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~ 679 (846)
.+..+++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|++|+++
T Consensus 265 ~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 2333444444444432 12334444455555555555555533 111223444445554444
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=2.6e-15 Score=166.62 Aligned_cols=247 Identities=24% Similarity=0.254 Sum_probs=157.4
Q ss_pred CCceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccC
Q 036168 524 PKRVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLR 603 (846)
Q Consensus 524 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~ 603 (846)
+..++.+.+..+... .++ .+..+++|+.|.+..+.... ++ ....+|++|++++|.+..+| .++++++|+
T Consensus 130 ~~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~----lp---~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKK----LP---DLPPSLEFIAAGNNQLEELP-ELQNLPFLT 198 (454)
T ss_dssp CTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSC----CC---CCCTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcc----cC---CCcccccEEECcCCcCCcCc-cccCCCCCC
Confidence 457888888777554 244 47888999999988654431 11 12358999999999988887 688899999
Q ss_pred eeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccC
Q 036168 604 YLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCEN 683 (846)
Q Consensus 604 ~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 683 (846)
+|++++|. +..+|... ++|++|++++|. +..+| .+..+++|++|++++|.+..+|.. +++|++|++++|..
T Consensus 199 ~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 199 AIYADNNS-LKKLPDLP---LSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL 269 (454)
T ss_dssp EEECCSSC-CSSCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred EEECCCCc-CCcCCCCc---CcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc
Confidence 99999876 44555432 588899998876 44777 488888999999998888876643 46788888887653
Q ss_pred cccchhhccCCCCcCEEEeecCCCCccccccc----------------cCC-CCcCeEecccCcccchhhhhhccccccc
Q 036168 684 LEYLFDDIDQLCVLRTIFIADCPRLISLPPAV----------------KYL-SSLETLMLEDCESLTLNLKIEMEGEESH 746 (846)
Q Consensus 684 ~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~----------------~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 746 (846)
. .+|.. +++|+.|++++|. +..+|... ..+ ++|++|++++|.... .+
T Consensus 270 ~-~l~~~---~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~------lp----- 333 (454)
T 1jl5_A 270 T-DLPEL---PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE------LP----- 333 (454)
T ss_dssp S-CCCCC---CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC------CC-----
T ss_pred c-ccCcc---cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc------cc-----
Confidence 3 34432 3667777777764 33332210 011 245555555442110 00
Q ss_pred ccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccc--cCCcCCCCC-------------CCcceeec
Q 036168 747 CDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFM--ALPESLRNL-------------EALETLAI 811 (846)
Q Consensus 747 ~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~--~lp~~~~~l-------------~~L~~L~l 811 (846)
....+|+.++++++ .+..+|. .+++|++|++++|+..+ .+|..+..+ ++|+.|++
T Consensus 334 ----~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 334 ----ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred ----ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 01237888888875 4556764 46899999999998777 788888777 88999999
Q ss_pred cCCcc
Q 036168 812 GGCPA 816 (846)
Q Consensus 812 ~~c~~ 816 (846)
++|+-
T Consensus 404 s~N~l 408 (454)
T 1jl5_A 404 ETNPL 408 (454)
T ss_dssp -----
T ss_pred CCCcC
Confidence 99873
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=2.5e-15 Score=153.14 Aligned_cols=149 Identities=18% Similarity=0.140 Sum_probs=89.6
Q ss_pred ceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecc
Q 036168 578 FLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVST 657 (846)
Q Consensus 578 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 657 (846)
..+.++++++.+..+|..+. ++|+.|+|++|......|..+.++++|++|++++|......|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45566666666666665544 4667777776654444445566677777777776654444444566666777777776
Q ss_pred ccccccc-ccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccC
Q 036168 658 KQKSLLE-SGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDC 729 (846)
Q Consensus 658 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~ 729 (846)
|.+..++ ..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|. .+..+++|++|+|++|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC
Confidence 6666444 334666666666666654433223335666666666666664 334433 4666666666666665
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=1.7e-16 Score=171.45 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCCccceeecccccc-------cccCCcCCCCCCCcceeeccCCc
Q 036168 777 GSTKTLKTLIIRNCPN-------FMALPESLRNLEALETLAIGGCP 815 (846)
Q Consensus 777 ~~l~~L~~L~L~~~~~-------l~~lp~~~~~l~~L~~L~l~~c~ 815 (846)
..+++|+.|+|++|.. ...++..+..+++|+.|++++|+
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4556677777777651 12233345566677777777765
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=5.2e-15 Score=158.83 Aligned_cols=221 Identities=17% Similarity=0.174 Sum_probs=163.7
Q ss_pred CceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccch-hhhcCCCCcEEecCCcCCCccc-cccccccCCCcEE
Q 036168 577 QFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPN-SICELHSLQTVCLGGCRELEEL-PKDIRYLVNLRMF 653 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L 653 (846)
++++.|+|++|.++.+|. .|.++++|++|+|++|...+.+|. .|.++++|..+...+++.+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 579999999999998886 589999999999999887676764 5778888876554443445554 6678999999999
Q ss_pred Eecccccccccc-cCCCCCCCCEeccccccCcccchh-hccCC-CCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 654 VVSTKQKSLLES-GIGCLSSLRFLMISDCENLEYLFD-DIDQL-CVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 654 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
++++|.+..++. .+....++..|++.++..+..++. .+..+ ..|+.|++++|. ++.+|......++|++|++++|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhccCC
Confidence 999999886654 345566788888888777776654 34554 468899999884 67788777777899999998775
Q ss_pred ccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceee
Q 036168 731 SLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLA 810 (846)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 810 (846)
.++.. +...+ ....+|+.|++++. .++.+|.. .+.+|+.|.+.+|..++.+|. +..+++|+.++
T Consensus 189 ~l~~i-----~~~~f-----~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 189 NLEEL-----PNDVF-----HGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp TCCCC-----CTTTT-----TTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred cccCC-----CHHHh-----ccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 55411 11111 11236888888874 56677743 467788888888888889985 88899999999
Q ss_pred ccCC
Q 036168 811 IGGC 814 (846)
Q Consensus 811 l~~c 814 (846)
+.++
T Consensus 253 l~~~ 256 (350)
T 4ay9_X 253 LTYP 256 (350)
T ss_dssp CSCH
T ss_pred CCCC
Confidence 8653
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=6.6e-15 Score=150.03 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=134.5
Q ss_pred CccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccc-ccCCCCCCCCEecc
Q 036168 600 KHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMI 678 (846)
Q Consensus 600 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l 678 (846)
...+.++++++ .++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46788999876 4778887665 68999999998866666677899999999999999998654 44789999999999
Q ss_pred ccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccc
Q 036168 679 SDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLR 757 (846)
Q Consensus 679 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~ 757 (846)
++|......+..+..+++|+.|++++|. +..+|. .+..+++|++|+|++|..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-------------------------- 143 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-------------------------- 143 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--------------------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcC--------------------------
Confidence 9987665555678899999999999985 445554 468899999999998831
Q ss_pred eEEccCCCCCCCCch-hhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCCcc
Q 036168 758 KLFVEGLPPLLELPQ-WLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGCPA 816 (846)
Q Consensus 758 ~l~l~~~~~l~~l~~-~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c~~ 816 (846)
..+|. .+ ..+++|++|+|++|......+..+..+++|+.|++++|+-
T Consensus 144 ----------~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 144 ----------QSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ----------CCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ----------CccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 12222 23 5677888888888865554455677788888888888874
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.2e-15 Score=149.16 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=125.6
Q ss_pred ccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEE
Q 036168 574 SKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMF 653 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 653 (846)
..+++|+.|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45678899999999998887 6888999999999988 355554 58889999999999988666678888999999999
Q ss_pred Eeccccccc-ccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 654 VVSTKQKSL-LESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 654 ~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
++++|.++. .+..++.+++|++|++++|..+..++ .+..+++|+.|++++|. +..++ .+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 999998884 56678899999999999987666676 68899999999999985 45565 67889999999999884
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.4e-15 Score=155.56 Aligned_cols=145 Identities=19% Similarity=0.291 Sum_probs=80.8
Q ss_pred cCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 575 KSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
.+++|+.|++++|.+..++ .+..+++|++|++++|. ++.++. +..+++|++|++++|. +..+| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 3455666666666665553 35556666666666554 333444 5666666666666654 33333 255666666666
Q ss_pred ecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
+++|.+..++ .+..+++|+.|++++|... .+ ..+..+++|+.|++++|. +..++. +..+++|+.|++++|
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCC
Confidence 6666665542 4555666666666655432 22 445566666666666653 333333 555666666666655
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3e-15 Score=169.02 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=143.1
Q ss_pred CceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEec
Q 036168 577 QFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 656 (846)
.+|+.|+|++|.+..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|. ++.+|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 489999999999998887664 899999999886 56888 568999999999987 455887 655 99999999
Q ss_pred ccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhh
Q 036168 657 TKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNL 736 (846)
Q Consensus 657 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~ 736 (846)
+|.++.+|. .+++|++|++++|... .+|. .+++|+.|++++|. ++.+|. +. ++|+.|+|++|..-.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~--- 194 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLES--- 194 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSS---
T ss_pred CCcCCCCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCc---
Confidence 999998876 6899999999997654 4665 67899999999985 556887 65 899999999984221
Q ss_pred hhhcccccccccCCC--CCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCC
Q 036168 737 KIEMEGEESHCDRNK--TRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRN 802 (846)
Q Consensus 737 ~~~~~~~~~~~~~~l--~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 802 (846)
++. ... .+ ....|+.|+++++ .+..+|..+ ..+++|+.|+|++|+..+.+|..+..
T Consensus 195 ---lp~---~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 ---LPA---VPV-RNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---CCC---CC---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ---hhh---HHH-hhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 111 110 11 0112377777764 456777776 45888888888888776666655443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=3.8e-16 Score=168.64 Aligned_cols=244 Identities=13% Similarity=0.043 Sum_probs=158.7
Q ss_pred HHHHhhccCCceeEEEeCCCChhhhh-----hhhcccC-ccCeeeccCCCcccccchhhhcC-----CCCcEEecCCcCC
Q 036168 568 ILTSCISKSQFLRVIDLSDSAIEVLS-----REIGNLK-HLRYLDLSGHDKIKKLPNSICEL-----HSLQTVCLGGCRE 636 (846)
Q Consensus 568 ~~~~~~~~~~~L~~L~L~~~~~~~l~-----~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~ 636 (846)
.++.++...++|++|+|++|.+...+ ..+..++ +|++|+|++|......+..+..+ ++|++|++++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44556666677999999999887554 5677787 89999999886555556666664 8899999998875
Q ss_pred Cccccccc----ccc-CCCcEEEecccccccccc-----cCCC-CCCCCEeccccccCcc----cchhhccCCC-CcCEE
Q 036168 637 LEELPKDI----RYL-VNLRMFVVSTKQKSLLES-----GIGC-LSSLRFLMISDCENLE----YLFDDIDQLC-VLRTI 700 (846)
Q Consensus 637 ~~~~p~~~----~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~~~~~~----~~~~~l~~l~-~L~~L 700 (846)
....+..+ ..+ ++|++|++++|.++..+. .+.. .++|++|++++|.... .++..+..++ +|+.|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 44444433 344 789999999888874432 2334 3688999998876543 3445556665 89999
Q ss_pred EeecCCCCccccc----cccCC-CCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhh
Q 036168 701 FIADCPRLISLPP----AVKYL-SSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL 775 (846)
Q Consensus 701 ~l~~~~~~~~l~~----~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~ 775 (846)
++++|......+. .+..+ ++|++|+|++|..-. .....++..+.
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------------------------------~~~~~l~~~l~ 221 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-------------------------------KSYAELAYIFS 221 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------------------------------SCHHHHHHHHH
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-------------------------------hHHHHHHHHHh
Confidence 9998864333332 34445 588999998884111 00112344341
Q ss_pred cCCCCccceeecccccccccC----CcCCCCCCCcceeeccCCc--cccccCCCCCCCCCCcccccceeeeCCCCCC
Q 036168 776 QGSTKTLKTLIIRNCPNFMAL----PESLRNLEALETLAIGGCP--ALSERCKPQTGEDWPKIAHIPQVCLEDESDN 846 (846)
Q Consensus 776 ~~~l~~L~~L~L~~~~~l~~l----p~~~~~l~~L~~L~l~~c~--~l~~~~~~~~~~~~~~i~~i~~l~~~~~~~n 846 (846)
...++|++|+|++|.....- ...+..+++|+.|++++|. .+...... .....+.++++|+.+|+++|
T Consensus 222 -~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~---~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 222 -SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK---ALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp -HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH---HHHTTSTTCCEEEEECTTSC
T ss_pred -cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH---HHHHHhccCCceEEEecCCC
Confidence 22468999999999654422 2345788999999999996 11111000 00113457788888888877
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5e-15 Score=146.26 Aligned_cols=179 Identities=19% Similarity=0.152 Sum_probs=131.3
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
+.++.+++.+..+|..+ .++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777777777777554 4688999998876443334457788899999998876443333446788899999999888
Q ss_pred ccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccchhhh
Q 036168 660 KSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTLNLK 737 (846)
Q Consensus 660 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~ 737 (846)
++.++.. +..+++|++|++++|......+..+..+++|+.|++++|.. ..++. .+..+++|++|++++|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~------ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW------ 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCB------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCe------
Confidence 8866544 67888999999988765544444578889999999998854 44444 477888899999888720
Q ss_pred hhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCC
Q 036168 738 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEA 805 (846)
Q Consensus 738 ~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 805 (846)
. ..+++|+.|+++.|...+.+|..++.++.
T Consensus 161 ------------------------------------~--~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 ------------------------------------D--CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------------------------------C--CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------------------------------e--cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 0 45678888889988888888887776654
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=2.1e-16 Score=183.34 Aligned_cols=202 Identities=14% Similarity=0.105 Sum_probs=144.5
Q ss_pred ceeEEEEEcCC-CCcchhhhhhcccccceEEEeccCCCc-chhHHHHHhhccCCceeEEEeCCCChh-----hhhhhhcc
Q 036168 526 RVRHLSFVGAN-TSINDFSSLLSDSRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSDSAIE-----VLSREIGN 598 (846)
Q Consensus 526 ~~r~l~~~~~~-~~~~~~~~~~~~~~~lr~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~ 598 (846)
.++++.+..+. .....+......+++|+.|.+..+... ....++...+..+++|+.|++++|.+. .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 47777776554 222234445567889999988855432 122335666778899999999988874 56666778
Q ss_pred cCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCC---ccccccccccCCCcEEEecccccccccccCCCCCCCCE
Q 036168 599 LKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCREL---EELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRF 675 (846)
Q Consensus 599 l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 675 (846)
+++|++|++++|. ...+|..+..+++|++|+++++... ...+..+..+++|+.|+++.+....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 8999999999875 5568888889999999999864432 23445678889999999988766677778888999999
Q ss_pred eccccccCccc-chhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEeccc
Q 036168 676 LMISDCENLEY-LFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLED 728 (846)
Q Consensus 676 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~ 728 (846)
|++++|..... ++..+..+++|+.|+++++-.-..++..+..+++|++|++++
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 99999873322 224467888999999885432233444456678888888884
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.2e-15 Score=168.49 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=70.3
Q ss_pred cCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 575 KSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
.+++|+.|++++|.+..++ .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 3444555555555555443 34555555555555443 333333 5555555555555543 23333 345555555555
Q ss_pred ecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
|++|.+..++ .+..+++|+.|+|++|... .+ ..+..+++|+.|+|++|.. ..++. +..+++|+.|+|++|
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSS
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcC-CCchh-hccCCCCCEEECcCC
Confidence 5555555442 3445555555555554332 22 3445555555555555532 22222 445555555555554
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=4.1e-15 Score=150.45 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=125.9
Q ss_pred cceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCC-hhhhhh-hhcccCccCeeeccCCCcccccc-hhhhcCCCCc
Q 036168 551 RARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSA-IEVLSR-EIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQ 627 (846)
Q Consensus 551 ~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~ 627 (846)
+++.|.+..+... .+.+..|.++++|++|++++|. +..++. .|.++++|++|++++|+.++.+| ..|..+++|+
T Consensus 32 ~l~~L~l~~n~l~---~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCS---EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcce---EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 6777777754432 2334467788888888888886 776665 67888888888888723355554 5677888888
Q ss_pred EEecCCcCCCccccccccccCCCc---EEEeccc-ccccccc-cCCCCCCCC-EeccccccCcccchhhccCCCCcCEEE
Q 036168 628 TVCLGGCRELEELPKDIRYLVNLR---MFVVSTK-QKSLLES-GIGCLSSLR-FLMISDCENLEYLFDDIDQLCVLRTIF 701 (846)
Q Consensus 628 ~L~l~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~~~~~~~-~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~ 701 (846)
+|++++|. +..+|. +..+++|+ .|++++| .+..++. .+..+++|+ +|++++|... .+|......++|+.|+
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 88888876 455775 77777777 8888888 7776554 477888888 8888886544 5655544447888888
Q ss_pred eecCCCCcccc-ccccCC-CCcCeEecccCc
Q 036168 702 IADCPRLISLP-PAVKYL-SSLETLMLEDCE 730 (846)
Q Consensus 702 l~~~~~~~~l~-~~~~~l-~~L~~L~l~~~~ 730 (846)
+++|..+..+| ..+..+ ++|+.|++++|.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 88885455664 457777 888888888874
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=6.7e-15 Score=158.00 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=160.2
Q ss_pred ccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChh-hhhh-hhcccCccCeeeccCCCccccc-chhhhcCCCC
Q 036168 550 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIE-VLSR-EIGNLKHLRYLDLSGHDKIKKL-PNSICELHSL 626 (846)
Q Consensus 550 ~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~-~~~~l~~L~~L~L~~~~~~~~l-p~~~~~l~~L 626 (846)
++++.|.+..+... .+.+..|.++++|++|+|++|.+. .+|. .|.++++|..+.+.+++.+..+ |..|..+++|
T Consensus 30 ~~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 57889998865543 344567889999999999999975 4553 5788888876544433345555 5678899999
Q ss_pred cEEecCCcCCCccccccccccCCCcEEEecc-cccccccc-cCCCC-CCCCEeccccccCcccchhhccCCCCcCEEEee
Q 036168 627 QTVCLGGCRELEELPKDIRYLVNLRMFVVST-KQKSLLES-GIGCL-SSLRFLMISDCENLEYLFDDIDQLCVLRTIFIA 703 (846)
Q Consensus 627 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 703 (846)
++|++++|......+..+....++..|++.. +.+..++. .+..+ ..|+.|++++|. ++.++......++|+.|.++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence 9999999875444444556777888888865 45655543 44555 468899999865 45677777777899999999
Q ss_pred cCCCCcccccc-ccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcc
Q 036168 704 DCPRLISLPPA-VKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTL 782 (846)
Q Consensus 704 ~~~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L 782 (846)
+|+.++.+|.. |..+++|++|++++|..-. ++.. ..-+|+.|.+.++..+..+|. + ..+++|
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~------lp~~--------~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L 248 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHS------LPSY--------GLENLKKLRARSTYNLKKLPT-L--EKLVAL 248 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCC------CCSS--------SCTTCCEEECTTCTTCCCCCC-T--TTCCSC
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCc------cChh--------hhccchHhhhccCCCcCcCCC-c--hhCcCh
Confidence 88888888864 7899999999999985222 1110 122678888888888888884 3 688999
Q ss_pred ceeecccc
Q 036168 783 KTLIIRNC 790 (846)
Q Consensus 783 ~~L~L~~~ 790 (846)
+.+++.++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 99999764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=5.5e-15 Score=168.89 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=140.4
Q ss_pred eeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
+..+.+..+.+..++ .+..+.+|+.|++++|. +..+| .+..|++|+.|+|++|. +..++. +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC
Confidence 444556666666443 35678999999999875 66776 48999999999999987 445554 899999999999999
Q ss_pred ccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccchhhhh
Q 036168 659 QKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTLNLKI 738 (846)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 738 (846)
.+..++ .+..+++|+.|+|++|... .+ +.+..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|.....
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~---- 168 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDI---- 168 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCC----
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCc----
Confidence 999876 7899999999999998654 34 568899999999999995 4455 5688999999999999853220
Q ss_pred hcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccc
Q 036168 739 EMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFM 794 (846)
Q Consensus 739 ~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~ 794 (846)
.+ .....+|+.|+|+++ .+..+| .+ ..+++|+.|+|++|+...
T Consensus 169 --~~-------l~~l~~L~~L~Ls~N-~i~~l~-~l--~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 --VP-------LAGLTKLQNLYLSKN-HISDLR-AL--AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GG-------GTTCTTCCEEECCSS-CCCBCG-GG--TTCTTCSEEECCSEEEEC
T ss_pred --hh-------hccCCCCCEEECcCC-CCCCCh-HH--ccCCCCCEEEccCCcCcC
Confidence 00 111236667777664 344454 23 567778888888776544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2.2e-14 Score=149.43 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=140.8
Q ss_pred hcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCC
Q 036168 546 LSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHS 625 (846)
Q Consensus 546 ~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~ 625 (846)
...+++|+.|.+..+..... ..+..+++|+.|+|++|.+..++. +..+++|++|++++|. ++.+|. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTT
T ss_pred hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCC
Confidence 34577889998876554322 136789999999999999998877 9999999999999886 566665 999999
Q ss_pred CcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 626 LQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 626 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
|++|++++|. +..+ ..+..+++|+.|++++|.+..+ ..+..+++|++|++++|... .++. +..+++|+.|++++|
T Consensus 114 L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCCC
Confidence 9999999987 4445 4688999999999999999987 57889999999999998654 4444 889999999999998
Q ss_pred CCCccccccccCCCCcCeEecccCc
Q 036168 706 PRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 706 ~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
. +..++. +..+++|+.|++++|.
T Consensus 189 ~-i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 H-ISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp C-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred c-CCCChh-hccCCCCCEEECcCCc
Confidence 5 566664 8899999999999985
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.9e-14 Score=140.58 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=87.6
Q ss_pred cccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccc-ccccCCCCCCCCE
Q 036168 597 GNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL-LESGIGCLSSLRF 675 (846)
Q Consensus 597 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 675 (846)
..+++|++|++++|. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.. .+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 557788888888764 55666 57778888888888773 44433 56777777777777777763 4556677777777
Q ss_pred eccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 676 LMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 676 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
|++++|......+..+..+++|+.|++++|..++.+| .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 7777766555556666777777777777765455555 4666666666666665
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.5e-16 Score=178.98 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=91.2
Q ss_pred ccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCC-------------cccccchhhhcCCCCcEEe-cCCcCCCcc
Q 036168 574 SKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHD-------------KIKKLPNSICELHSLQTVC-LGGCRELEE 639 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~-------------~~~~lp~~~~~l~~L~~L~-l~~~~~~~~ 639 (846)
..++.|+.|+|++|.+..+|..+++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|. +..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 45788889999999999999999999999999987653 2345566677777777777 44332 222
Q ss_pred ccc------cccc--cCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccc
Q 036168 640 LPK------DIRY--LVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISL 711 (846)
Q Consensus 640 ~p~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l 711 (846)
++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|... .+|..++.+++|+.|+|++|. ++.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCC
Confidence 211 0111 1235556666665555554 555566666666554332 455555556666666665553 3335
Q ss_pred cccccCCCCcCeEecccC
Q 036168 712 PPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 712 ~~~~~~l~~L~~L~l~~~ 729 (846)
| .++.+++|++|+|++|
T Consensus 502 p-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNN 518 (567)
T ss_dssp G-GGTTCSSCCEEECCSS
T ss_pred c-ccCCCCCCcEEECCCC
Confidence 4 4555555555555555
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=3.5e-14 Score=141.14 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=121.5
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
+.++++++.++.+|..+. ++|+.|+|++|......+..|..+++|++|+|++|......|..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888888887655 789999999886444444578889999999999988666668888999999999999999
Q ss_pred ccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 660 KSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 660 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
++.+|.. +..+++|++|++++|......+..+..+++|+.|+|++|......+..+..+++|++|++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9877655 5789999999999987766667788899999999999986544444568889999999999885
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=8.9e-14 Score=138.19 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=119.8
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
+.++++++.++.+|..+. ..+++|+|++|......| ..|..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578899999888887654 457899999876433323 34788999999999988755545557889999999999999
Q ss_pred ccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 659 QKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 659 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
.++.++. .+..+++|++|++++|......|..+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9886654 47889999999999987766667888999999999999986555557888999999999999884
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=2.9e-14 Score=160.98 Aligned_cols=111 Identities=20% Similarity=0.307 Sum_probs=48.7
Q ss_pred CceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEec
Q 036168 577 QFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 656 (846)
++|+.|+|++|.+..+| ..+++|++|+|++|. ++.+|. +.. +|++|++++|. ++.+|. .+++|+.|+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCC
Confidence 34445555555444444 234445555554443 223444 332 45555554443 222443 34445555555
Q ss_pred ccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 657 TKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 657 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
+|.++.+|. .+++|++|++++|.. +.+|. +. ++|+.|++++|
T Consensus 149 ~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 149 NNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSS
T ss_pred CCccCcCCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCC
Confidence 554444433 344445555544432 22333 32 44555555444
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=2.3e-12 Score=140.33 Aligned_cols=297 Identities=13% Similarity=0.013 Sum_probs=182.7
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----c--CCeeEEEEecCcc-c
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----H--FKLKIWICVSEDF-E 234 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~ 234 (846)
.+..++||+++++++..++.....+ ...+.+.|+|++|+||||+|+.+++...... . ....+|+++.... +
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 3478999999999999888653222 3356899999999999999999998532221 1 3346788877766 8
Q ss_pred HHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhh-HHH-HHHhhCCCCCCcEEEEeCCCh
Q 036168 235 QRQIMTKIIKSITGQNP--GDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKV-WDE-LKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iiiTtR~~ 310 (846)
...++..++..+.+... ...+...+...+.+.+..++.+|||||++...... .+. +...+... .+..||+||+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 88888998888854322 22344666777778887766699999996532211 222 33333322 677899999875
Q ss_pred HH----HHHhCCCCCCCcEecCCCChHHHHHHHHHhhcc--CCCCCCcchHHHHHHHHHhhC---CCch-HHHHHhhhh-
Q 036168 311 KV----ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFK--EGQHKHPNLVKIGEEIVKKCG---GIPL-AVRTLGSLL- 379 (846)
Q Consensus 311 ~~----~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l- 379 (846)
.. ........ ...+.+++++.++..+++...+.. .....++ +..+.|++.++ |.|. ++..+-...
T Consensus 175 ~~~~~l~~~l~sr~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 175 NVRDYMEPRVLSSL-GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTSCHHHHHTC-CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 32 11111110 127999999999999999988632 1111222 45567778887 9887 333332222
Q ss_pred -cC---CCCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcccChhHHHHHHHHcCCCCCC
Q 036168 380 -YG---STDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYDFTSVLLIRFWMAHGLLQSP 455 (846)
Q Consensus 380 -~~---~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~~li~~w~a~g~i~~~ 455 (846)
.. .-+.+.+..+..... ...+..++..|+++.+..+..++....+..+. ......-...| .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~--- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q--- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C---
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C---
Confidence 11 124445544433211 13466778899999998888887611101111 11111112233 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCccccc
Q 036168 456 NENEEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 456 ~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
..........+++.|...++++...
T Consensus 316 --~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 --KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred --CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1122355778899999999998754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=2.7e-14 Score=146.25 Aligned_cols=141 Identities=19% Similarity=0.214 Sum_probs=71.0
Q ss_pred ceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecc
Q 036168 578 FLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVST 657 (846)
Q Consensus 578 ~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 657 (846)
.+..++++++.+..++ .+..+++|++|++++|. ++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 3444455555555444 34555555555555543 44444 35555555555555544 333333 55555555555555
Q ss_pred cccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 658 KQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 658 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
|.+..++.... ++|++|++++|... .+ +.+..+++|+.|++++|. ++.++ .+..+++|+.|++++|
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~-~~-~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELR-DT-DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCS-BS-GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS
T ss_pred CccCCcCcccc--CcccEEEccCCccC-CC-hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC
Confidence 55554443222 55555555554322 22 235555555555555553 33333 3555555555555555
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.2e-13 Score=138.25 Aligned_cols=147 Identities=24% Similarity=0.241 Sum_probs=116.1
Q ss_pred eeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCcccc-ccccccCCCcEEEecc
Q 036168 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELP-KDIRYLVNLRMFVVST 657 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~ 657 (846)
.+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|.. ..+| ..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 4567888888888887554 8899999998876556677788899999999998774 5554 4568889999999999
Q ss_pred ccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCcccc-ccccCCCCcCeEecccCc
Q 036168 658 KQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLP-PAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 658 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 730 (846)
|.++.++.. +..+++|++|++++|. +..+|..+..+++|+.|++++|. +..+| ..+..+++|+.|++++|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 988866544 6788999999998865 44778888899999999999885 44555 457888999999999884
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=3.2e-15 Score=173.47 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=19.5
Q ss_pred CCccceeeccccccccc-CCcCCCCCCCcceeeccCCcc
Q 036168 779 TKTLKTLIIRNCPNFMA-LPESLRNLEALETLAIGGCPA 816 (846)
Q Consensus 779 l~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~ 816 (846)
+++|++|+|++|+.... ++..+..+++|+.|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 55666666666654221 112233456666666666654
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=2.8e-15 Score=173.96 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=68.9
Q ss_pred ceeEEEEEcCCCCcchhhhhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhh-----hhhhhcccC
Q 036168 526 RVRHLSFVGANTSINDFSSLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEV-----LSREIGNLK 600 (846)
Q Consensus 526 ~~r~l~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~l~ 600 (846)
.++++.+..+......+......+++|+.|.+..+. ......++..+.++++|++|+|++|.+.. ++.....++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 456666665544322222222356677777776432 12223344455567777777777776442 222233566
Q ss_pred ccCeeeccCCC-cc--cccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEec
Q 036168 601 HLRYLDLSGHD-KI--KKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVS 656 (846)
Q Consensus 601 ~L~~L~L~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 656 (846)
+|++|++++|. .+ ..++..+..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 77777777654 11 1222333456777777777664444455555555566665543
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=4.5e-12 Score=138.40 Aligned_cols=303 Identities=14% Similarity=0.086 Sum_probs=188.9
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhcc-CCeeEEEEecCcccHHHHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEH-FKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 240 (846)
.+..++||+.+++++..++.....+.....+.+.|+|++|+||||+|+.+++.. ... -..++|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHH
Confidence 347799999999999998865311111223489999999999999999998742 222 12467788777778888899
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEeeccCCCChhhHHHHHHhhCCCC----CCcEEEEeCCChHHH
Q 036168 241 KIIKSITGQNP-GDLDTDQLRRILRDRLN--GEIYLLVMDDVWNEDPKVWDELKSLLLGSA----KGSKILVTTRSNKVA 313 (846)
Q Consensus 241 ~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iiiTtR~~~~~ 313 (846)
.++..++.... ...+...+.+.+.+.+. +++.+||||+++..+......+...+.... .+..||++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 98888754322 23355666666666653 568899999998877767777777664422 466788888776443
Q ss_pred HHhCC----CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhh---------CCCchHHHHHhhhhc
Q 036168 314 SIMGT----MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKC---------GGIPLAVRTLGSLLY 380 (846)
Q Consensus 314 ~~~~~----~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l~ 380 (846)
..... ......+.+.+++.++..+++...+...... ..-..+..+.|++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 32210 0011269999999999999998876431111 111235667888888 798865554433221
Q ss_pred ------CC--CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCC---CCcccChhHHHHHHHH-
Q 036168 381 ------GS--TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFP---KDYDFTSVLLIRFWMA- 448 (846)
Q Consensus 381 ------~~--~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp---~~~~~~~~~li~~w~a- 448 (846)
.. -+.+....+.... . ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~------~----~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV------L----FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH------S----CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH------h----hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1122211111110 0 11234456788999898888887654 2224555555544432
Q ss_pred ---cCCCCCCCCCCCHHHHHHHHHHHHHhcCCcccccC
Q 036168 449 ---HGLLQSPNENEEPENIGVRYLNELLSRSFFQDFTN 483 (846)
Q Consensus 449 ---~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~ 483 (846)
.|.. .........++++|...++|.....
T Consensus 322 ~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGER------PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCC------CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCC------CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 2321 1123456788999999999987543
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.48 E-value=3.2e-12 Score=139.44 Aligned_cols=300 Identities=15% Similarity=0.099 Sum_probs=182.2
Q ss_pred cCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---c-CCeeEEEEecCcccHHH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---H-FKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~ 237 (846)
.+..++||+.+++++..++.....+ ...+.+.|+|++|+||||+|+.+++...... . -...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 4578999999999999998653211 3356889999999999999999997532210 1 12466888888888889
Q ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHHHh--cCceEEEEeeccCCCChh--hHHHHHHhhC---CC--CCCcEEEEeC
Q 036168 238 IMTKIIKSITGQNP-GDLDTDQLRRILRDRL--NGEIYLLVMDDVWNEDPK--VWDELKSLLL---GS--AKGSKILVTT 307 (846)
Q Consensus 238 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~---~~--~~gs~iiiTt 307 (846)
++..++..++.... ...+..++...+.+.+ .+++.+||||+++..... ..+.+...+. .. ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 99999998854322 2334666667777766 456899999999654222 2233333332 11 4456788888
Q ss_pred CChHHH----HHhCCCCCCCcEecCCCChHHHHHHHHHhhcc--CCCCCCcchHHHHHHHHHhhC---CCchHHHHH-hh
Q 036168 308 RSNKVA----SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFK--EGQHKHPNLVKIGEEIVKKCG---GIPLAVRTL-GS 377 (846)
Q Consensus 308 R~~~~~----~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~--~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~-~~ 377 (846)
+..... ...........+.+++++.++..+++...+.. .+...++ +..+.+++.++ |.|..+..+ ..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 765321 11111111136899999999999999987632 1112222 34567777777 999443322 22
Q ss_pred hhc-----CC--CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhc-cCCCCcccChhHHHHHH---
Q 036168 378 LLY-----GS--TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCS-IFPKDYDFTSVLLIRFW--- 446 (846)
Q Consensus 378 ~l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a-~fp~~~~~~~~~li~~w--- 446 (846)
... .. -+.+.+..+.... ....+.-++..|+++.+..+..++ ++.....+....+.+..
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 211 11 1334444333221 112456678899999988888777 44322234444333322
Q ss_pred -HHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccc
Q 036168 447 -MAHGLLQSPNENEEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 447 -~a~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
-..| . ..........+++.|...++++...
T Consensus 322 ~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-L-----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 2223 1 1223456778899999999998753
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=2.1e-13 Score=139.52 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=123.8
Q ss_pred hccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 573 ISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 573 ~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
+..+++|++|++++|.+..++ .+..+++|++|+|++|. ++.+|. +..+++|++|++++|. +..+|.... ++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccE
Confidence 567889999999999999887 78899999999999885 666666 9999999999999987 555664333 99999
Q ss_pred EEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 653 FVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 653 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
|++++|.++.++ .+..+++|+.|++++|.. +.++ .+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcC-CCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCCEEeCCCCc
Confidence 999999999875 688999999999999764 4454 688999999999999864 444 668899999999999985
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2.2e-14 Score=168.39 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=50.6
Q ss_pred chhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhccCCCC
Q 036168 617 PNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCV 696 (846)
Q Consensus 617 p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 696 (846)
|..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|... .+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 3344444444444444443 224444444444444444444444444444444555555555544322 44444555555
Q ss_pred cCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 697 LRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 697 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
|+.|+|++|. ++.+|..|+.+++|+.|+|++|
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 5555555542 3445555555555555555555
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=2.3e-13 Score=134.20 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=111.6
Q ss_pred CCceeEEEeCCCChhhhhhh-hcccCccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEE
Q 036168 576 SQFLRVIDLSDSAIEVLSRE-IGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMF 653 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~~~-~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 653 (846)
.++|++|++++|.+..++.. +..+++|++|++++|.. +.+| ..+..+++|++|++++|......+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 45788999999988876654 67889999999998764 4444 456889999999999887444334456889999999
Q ss_pred Eeccccccccccc-CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccC
Q 036168 654 VVSTKQKSLLESG-IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 654 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~ 729 (846)
++++|.+..++.. +..+++|++|++++|......+..+..+++|+.|++++|+.. +.+++|+.|+++.|
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN 175 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHH
Confidence 9999988866554 688899999999987655444445788999999999988532 45677888888776
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=2.9e-13 Score=145.80 Aligned_cols=148 Identities=15% Similarity=0.178 Sum_probs=94.5
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhh-cCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSIC-ELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
+.++++++.+..+|..+. ..+++|+|++|......+..+. .+++|++|+|++|......+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466777777777666543 4567777776653333333444 6777777777776644434455677777777777777
Q ss_pred ccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccc----cCCCCcCeEecccCc
Q 036168 659 QKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAV----KYLSSLETLMLEDCE 730 (846)
Q Consensus 659 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~----~~l~~L~~L~l~~~~ 730 (846)
.+..++. .+..+++|++|+|++|......+..+..+++|+.|+|++|. +..+|..+ ..+++|+.|+|++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 7775543 46677777777777766555456667777777777777764 44555443 457777777777764
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.6e-15 Score=170.61 Aligned_cols=176 Identities=19% Similarity=0.190 Sum_probs=129.5
Q ss_pred cccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcC-------------CCccccccccccCCCcEEE-eccccccc
Q 036168 597 GNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCR-------------ELEELPKDIRYLVNLRMFV-VSTKQKSL 662 (846)
Q Consensus 597 ~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~-------------~~~~~p~~~~~l~~L~~L~-l~~~~~~~ 662 (846)
..+++|+.|+|++|. ++.+|..++.|++|+.|++++|. .....|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 568999999999875 77999999999999999997764 3445667778888888888 55543322
Q ss_pred ccc------cCCC--CCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCcccch
Q 036168 663 LES------GIGC--LSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCESLTL 734 (846)
Q Consensus 663 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 734 (846)
++. .+.. ...|+.|++++|.. +.+|. ++.+++|+.|++++|. +..+|..++.+++|+.|+|++|.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~---- 497 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA---- 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC----
T ss_pred hhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC----
Confidence 211 0111 12588888888644 45665 8888888888888885 45888888888888888888873
Q ss_pred hhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccC-CcCCCCCCCcceeeccC
Q 036168 735 NLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMAL-PESLRNLEALETLAIGG 813 (846)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~ 813 (846)
+..+| .+ ..+++|+.|+|++|...+.. |..+..+++|+.|+|++
T Consensus 498 --------------------------------l~~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 --------------------------------LENVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp --------------------------------CCCCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred --------------------------------CCCCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 11234 34 67888888888888655544 77888888888888888
Q ss_pred Cc
Q 036168 814 CP 815 (846)
Q Consensus 814 c~ 815 (846)
|+
T Consensus 543 N~ 544 (567)
T 1dce_A 543 NS 544 (567)
T ss_dssp SG
T ss_pred Cc
Confidence 86
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.7e-13 Score=128.62 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=93.3
Q ss_pred cCCceeEEEeCCCChh--hhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcE
Q 036168 575 KSQFLRVIDLSDSAIE--VLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRM 652 (846)
Q Consensus 575 ~~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 652 (846)
..++|+.|++++|.+. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4477888888888887 777777888888888888776 4444 56778888888888887755546766677888888
Q ss_pred EEeccccccccc--ccCCCCCCCCEeccccccCcccchh----hccCCCCcCEEEeecCC
Q 036168 653 FVVSTKQKSLLE--SGIGCLSSLRFLMISDCENLEYLFD----DIDQLCVLRTIFIADCP 706 (846)
Q Consensus 653 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 706 (846)
|++++|.++.++ ..+..+++|++|++++|... .++. .+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCC
Confidence 888888777654 56677777777777776443 3333 56667777777777663
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=7.8e-13 Score=132.32 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=109.0
Q ss_pred CceeEEEeCCCChhhh-hhhhcccCccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 577 QFLRVIDLSDSAIEVL-SREIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
++|++|+|++|.+..+ |..|..+++|++|+|++|. ++.+| ..|..+++|++|+|++|......+..+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 7899999999999866 5678899999999999887 45555 5578999999999999875444445578999999999
Q ss_pred ecccccccccccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCC
Q 036168 655 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRL 708 (846)
Q Consensus 655 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 708 (846)
+++|.+..+|..+..+++|++|++++|......+..+..+++|+.|++++|+..
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999989999999999999997655444456888999999999998643
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=9.3e-13 Score=130.79 Aligned_cols=130 Identities=24% Similarity=0.341 Sum_probs=109.6
Q ss_pred CceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccc-cccccCCCcEEE
Q 036168 577 QFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPK-DIRYLVNLRMFV 654 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 654 (846)
++|+.|+|++|.+..++. .|..+++|++|+|++|......|..|.++++|++|+|++|.. ..+|. .+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEE
Confidence 578999999999987765 688899999999999876656688899999999999999874 45554 468899999999
Q ss_pred ecccccccc-cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCC
Q 036168 655 VSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPR 707 (846)
Q Consensus 655 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 707 (846)
+++|.+..+ +..+..+++|++|++++|......+..+..+++|+.|++++|+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999855 56788999999999999876655556688999999999999863
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=130.03 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=110.3
Q ss_pred CceeEEEeCCCChhhhh--hhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 577 QFLRVIDLSDSAIEVLS--REIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
+.+++|+|++|.+..++ ..|..+++|++|+|++|......|..|..+++|++|+|++|......|..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 45789999999998774 3488999999999998874444455799999999999999886555566689999999999
Q ss_pred ecccccccc-cccCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCC
Q 036168 655 VSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPR 707 (846)
Q Consensus 655 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 707 (846)
+++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|+.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999855 67789999999999999877666688899999999999999864
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.2e-11 Score=132.73 Aligned_cols=301 Identities=16% Similarity=0.139 Sum_probs=178.4
Q ss_pred ccCCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC---CeeEEEEecCcccHHH
Q 036168 161 VLPSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF---KLKIWICVSEDFEQRQ 237 (846)
Q Consensus 161 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 237 (846)
..+..|+||+++++++.+++.....+ ...+.+.|+|++|+||||||+.+++. ....+ ...+|+++....+...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHH
Confidence 34578999999999999988653111 33568999999999999999999984 33222 2467887776667777
Q ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc--CceEEEEeeccCCCC----hhhHHHHHHhhCC-CCCCcEEEEeCCC
Q 036168 238 IMTKIIKSITGQNP-GDLDTDQLRRILRDRLN--GEIYLLVMDDVWNED----PKVWDELKSLLLG-SAKGSKILVTTRS 309 (846)
Q Consensus 238 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iiiTtR~ 309 (846)
++..++..++.... ...+..+....+.+.+. +++.+||||+++... ......+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888777643221 22345566666666664 458999999996521 3344445444422 2335567888876
Q ss_pred hHHHHHhC----CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhC---CCchHHHHHhhhhc--
Q 036168 310 NKVASIMG----TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCG---GIPLAVRTLGSLLY-- 380 (846)
Q Consensus 310 ~~~~~~~~----~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~~l~-- 380 (846)
........ .......+.+++++.++..+++...+...... ..-..++.+.+++.++ |.|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 64322211 11111379999999999999999865321111 1112355667777777 99985443332221
Q ss_pred ----C--CCCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCC-C-cccChhHHHHHH----HH
Q 036168 381 ----G--STDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPK-D-YDFTSVLLIRFW----MA 448 (846)
Q Consensus 381 ----~--~~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~-~-~~~~~~~li~~w----~a 448 (846)
. .-+.+....+.... ....+.-.+..+|+..+..+..++...+ + ..+....+.+.+ -.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 11233333332221 1234566778899998888887774322 2 123333332221 11
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhcCCccccc
Q 036168 449 HGLLQSPNENEEPENIGVRYLNELLSRSFFQDFT 482 (846)
Q Consensus 449 ~g~i~~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (846)
.|. . .........+++.|...++++...
T Consensus 322 ~g~-~-----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 322 LGV-E-----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HTC-C-----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCC-C-----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 231 1 112345677899999999997643
No 132
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.38 E-value=7.8e-12 Score=126.88 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=122.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++||+..++.+..++... ...+.+.|+|++|+||||+|+.+++.......+.. ..+.. ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 46999999999999999753 22358899999999999999999874321111100 00000 000 00000
Q ss_pred HHhc----C-CCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHH-
Q 036168 244 KSIT----G-QNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVA- 313 (846)
Q Consensus 244 ~~l~----~-~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~- 313 (846)
.... . ........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 0 000001111121211111 13567999999998877778888888887666678889888765321
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
..... +...+.+.+++.++..+++...+...+...+ .+..+.|++.|+|+|..+..+...+
T Consensus 171 ~~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH--HhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11111 1247999999999999999988755433222 3567899999999999988776543
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.1e-12 Score=141.32 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=114.9
Q ss_pred CceeEEEeCCCChhhhhhh-hc-ccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEE
Q 036168 577 QFLRVIDLSDSAIEVLSRE-IG-NLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFV 654 (846)
Q Consensus 577 ~~L~~L~L~~~~~~~l~~~-~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 654 (846)
+.++.|+|++|.+..++.. +. ++++|++|+|++|......|..|..+++|++|+|++|......+..+..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4578899999998877654 54 789999999998864444456788899999999999875444455678899999999
Q ss_pred ecccccccc-cccCCCCCCCCEeccccccCcccchhhc----cCCCCcCEEEeecCCCCcccc-ccccCCCC--cCeEec
Q 036168 655 VSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYLFDDI----DQLCVLRTIFIADCPRLISLP-PAVKYLSS--LETLML 726 (846)
Q Consensus 655 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~--L~~L~l 726 (846)
|++|.+..+ +..+..+++|+.|+|++|... .+|..+ ..+++|+.|+|++|. +..+| ..+..++. |+.|+|
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEe
Confidence 999998855 567888999999999987544 455443 578999999999885 44555 44666776 488999
Q ss_pred ccCc
Q 036168 727 EDCE 730 (846)
Q Consensus 727 ~~~~ 730 (846)
++|+
T Consensus 197 ~~N~ 200 (361)
T 2xot_A 197 HNNP 200 (361)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9875
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=4e-13 Score=124.61 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCceeEEEeCCCChh--hhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEE
Q 036168 576 SQFLRVIDLSDSAIE--VLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMF 653 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 653 (846)
.++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777776 666666777777777777664 3333 456667777777777766444466655666667777
Q ss_pred Eeccccccccc--ccCCCCCCCCEeccccccCcccch---hhccCCCCcCEEEee
Q 036168 654 VVSTKQKSLLE--SGIGCLSSLRFLMISDCENLEYLF---DDIDQLCVLRTIFIA 703 (846)
Q Consensus 654 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 703 (846)
++++|.++.++ ..++.+++|++|++++|......+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77666666433 445555566666665553322111 234455555555443
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=8.5e-13 Score=154.89 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=104.8
Q ss_pred HHHHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCcccccccccc
Q 036168 568 ILTSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYL 647 (846)
Q Consensus 568 ~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 647 (846)
.++..|..++.|+.|+|++|.+..+|..+..+++|++|+|++|. ++.+|..|+.|++|++|+|++|. +..+|..++.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 55677899999999999999999999999999999999999886 55999999999999999999988 45889999999
Q ss_pred CCCcEEEecccccccccccCCCCCCCCEeccccccCcccchhhc
Q 036168 648 VNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFDDI 691 (846)
Q Consensus 648 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 691 (846)
++|++|+|++|.++.+|..|+.+++|++|+|++|.....+|..+
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999999999999999999999999988765555443
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=2.7e-12 Score=121.68 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=107.7
Q ss_pred cccCccCeeeccCCCcc-cccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccc-ccccCCCCCCCC
Q 036168 597 GNLKHLRYLDLSGHDKI-KKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL-LESGIGCLSSLR 674 (846)
Q Consensus 597 ~~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~ 674 (846)
...++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34588999999988744 3888888999999999999987 4455 678899999999999999986 666667799999
Q ss_pred EeccccccCcccch--hhccCCCCcCEEEeecCCCCccccc----cccCCCCcCeEecccCcc
Q 036168 675 FLMISDCENLEYLF--DDIDQLCVLRTIFIADCPRLISLPP----AVKYLSSLETLMLEDCES 731 (846)
Q Consensus 675 ~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~ 731 (846)
+|++++|.. ..++ ..+..+++|+.|++++|. +..+|. .+..+++|++|++++|..
T Consensus 99 ~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999754 4444 678899999999999985 455555 688899999999999853
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=6.7e-12 Score=121.67 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=85.4
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccch--hhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPN--SICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVST 657 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 657 (846)
+.++++++.+..+|..+.. +|++|++++|. ++.++. .+..+++|++|+|++|......|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6778888888877775543 78888888775 444443 377788888888888775555567777777788888777
Q ss_pred cccccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCC
Q 036168 658 KQKSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCP 706 (846)
Q Consensus 658 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 706 (846)
|.++.++. .+..+++|++|++++|......|..+..+++|+.|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 77775443 36667777777777665555555666666666666666664
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.3e-12 Score=119.39 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=102.5
Q ss_pred ccCccCeeeccCCCcc-cccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccc-ccccCCCCCCCCE
Q 036168 598 NLKHLRYLDLSGHDKI-KKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSL-LESGIGCLSSLRF 675 (846)
Q Consensus 598 ~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~ 675 (846)
..++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999988754 4888888999999999999986 4444 678889999999999999886 7766777899999
Q ss_pred eccccccCccc-chhhccCCCCcCEEEeecCCCCccccc----cccCCCCcCeEeccc
Q 036168 676 LMISDCENLEY-LFDDIDQLCVLRTIFIADCPRLISLPP----AVKYLSSLETLMLED 728 (846)
Q Consensus 676 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~ 728 (846)
|++++|..... .+..+..+++|+.|++++|. +..+|. .+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 99998764431 23778899999999999985 455554 578889999998863
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=6.4e-11 Score=118.14 Aligned_cols=187 Identities=17% Similarity=0.166 Sum_probs=119.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 241 (846)
...++|+++.++++..++... ....+.|+|++|+|||++|+.+++.... ..+. ..+.+..+.......+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHH
Confidence 356899999999999999753 2234899999999999999999874211 1221 2333333333222222211
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHH-HHHhCCCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKV-ASIMGTMR 320 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~~~~~~ 320 (846)
+ ........ ...+++.+||+||++.......+.+...+.....+.++|+||+.... ......
T Consensus 89 ~-~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~-- 151 (226)
T 2chg_A 89 I-KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS-- 151 (226)
T ss_dssp H-HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--
T ss_pred H-HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--
Confidence 1 11110000 01356789999999887777777777777666667788988876531 111111
Q ss_pred CCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 321 GTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+...+.+.+++.++..+++...+...+...+ .+..+.+++.++|.|..+..+.
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1237899999999999999987754332222 3566789999999999655443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=119.01 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=73.1
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 659 (846)
++++++++.+..+|..+. ++|++|+|++|. ++.+|..+..+++|++|++++|......+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777777777776543 577777777664 55667677777777777777766444444556666666666666666
Q ss_pred cccccc-cCCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecC
Q 036168 660 KSLLES-GIGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 660 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
++.++. .+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 664432 3555555555555554433222223444555555555544
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=5.4e-12 Score=120.55 Aligned_cols=104 Identities=22% Similarity=0.345 Sum_probs=51.5
Q ss_pred ccCCceeEEEeCCCChhhhhhhhcccC-ccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccc-cccCCCc
Q 036168 574 SKSQFLRVIDLSDSAIEVLSREIGNLK-HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDI-RYLVNLR 651 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~ 651 (846)
..+.+|+.|++++|.+..+|. +..+. +|++|++++|. ++.+ ..+..+++|++|++++|. +..+|..+ ..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 345566666666666655533 33333 66666666554 3333 345555556666665554 23333222 5555555
Q ss_pred EEEecccccccccc--cCCCCCCCCEeccccc
Q 036168 652 MFVVSTKQKSLLES--GIGCLSSLRFLMISDC 681 (846)
Q Consensus 652 ~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~ 681 (846)
+|++++|.+..+|. .+..+++|+.|++++|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 55555555544433 3334444444444443
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.3e-11 Score=117.87 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=108.5
Q ss_pred hhcccCccCeeeccCCCcccccchhhhcC-CCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccC-CCCCC
Q 036168 595 EIGNLKHLRYLDLSGHDKIKKLPNSICEL-HSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGI-GCLSS 672 (846)
Q Consensus 595 ~~~~l~~L~~L~L~~~~~~~~lp~~~~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~ 672 (846)
.+.++.+|+.|++++|. +..+|. +..+ ++|++|++++|. +..+ ..+..+++|++|++++|.++.+|..+ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 46678999999999886 556766 5554 499999999987 4445 57899999999999999999877655 88999
Q ss_pred CCEeccccccCcccchh--hccCCCCcCEEEeecCCCCcccccc----ccCCCCcCeEecccCcc
Q 036168 673 LRFLMISDCENLEYLFD--DIDQLCVLRTIFIADCPRLISLPPA----VKYLSSLETLMLEDCES 731 (846)
Q Consensus 673 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~l~~~----~~~l~~L~~L~l~~~~~ 731 (846)
|++|++++|.. ..+|. .+..+++|+.|++++|+ +..+|.. +..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSL-VELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999765 56666 78899999999999986 4567764 88899999999999853
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=4.5e-11 Score=115.78 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=105.8
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccc--cccccCCCcEEEecccccccc-cccCCCCCCCCEecc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPK--DIRYLVNLRMFVVSTKQKSLL-ESGIGCLSSLRFLMI 678 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l 678 (846)
-++++++++. ++.+|..+.. +|++|++++|. +..++. .+..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3789999775 6888876643 99999999987 455554 389999999999999999965 678999999999999
Q ss_pred ccccCcccchhhccCCCCcCEEEeecCCCCccccccccCCCCcCeEecccCc
Q 036168 679 SDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 679 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 730 (846)
++|......+..+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9987766666678999999999999997766678889999999999999984
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=7.5e-13 Score=129.28 Aligned_cols=132 Identities=26% Similarity=0.313 Sum_probs=89.9
Q ss_pred hhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCC
Q 036168 589 IEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIG 668 (846)
Q Consensus 589 ~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~ 668 (846)
++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.++.+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 33455577777778888877664 45566 67777778888887765 4466766677777888888877777665 566
Q ss_pred CCCCCCEeccccccCcccch--hhccCCCCcCEEEeecCCCCccccc----------cccCCCCcCeEe
Q 036168 669 CLSSLRFLMISDCENLEYLF--DDIDQLCVLRTIFIADCPRLISLPP----------AVKYLSSLETLM 725 (846)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~l~~----------~~~~l~~L~~L~ 725 (846)
.+++|++|++++|... .++ ..+..+++|+.|++++|+.....|. .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777888888776543 333 3577788888888887754333332 256777888776
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1e-10 Score=113.28 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=104.5
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccc-ccCCCCCCCCEecccc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMISD 680 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 680 (846)
-++++++++. ++.+|..+. ++|++|++++|. +..+|..+..+++|+.|++++|.++.++ ..|..+++|++|++++
T Consensus 12 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCC-CCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3678888764 778887553 689999999987 5688899999999999999999999665 4589999999999999
Q ss_pred ccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCc
Q 036168 681 CENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCE 730 (846)
Q Consensus 681 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 730 (846)
|......+..+..+++|+.|+|++|. +..+|. .+..+++|+.|++++|+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 87666566689999999999999986 455655 58889999999999985
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.18 E-value=9.8e-11 Score=124.10 Aligned_cols=271 Identities=16% Similarity=0.089 Sum_probs=147.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-..++|++..++++..++....... .....+.|+|++|+|||++|+.+++.. .. ..++++.+.....
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSH-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCCh-------
Confidence 3579999999999888875321000 123578899999999999999998732 21 2234433322221
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC------------------CCcEEE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA------------------KGSKIL 304 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 304 (846)
.++...+...+ .++.+|+||+++.......+.+...+.... ++..+|
T Consensus 78 --------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 --------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp --------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred --------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11222221111 345799999998776666666665543221 235566
Q ss_pred EeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhhcCC-
Q 036168 305 VTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLLYGS- 382 (846)
Q Consensus 305 iTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~- 382 (846)
.||.... +..... ......+.+.+++.++..+++...+...+...+ .+....+++.++|.|..+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~-~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLL-SRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTT-TTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHH-hcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 111111 111247899999999999999888754433222 3567889999999999887765544211
Q ss_pred -------CCHHHHHHHHhhhhccccccCCCchHHHHHhHhcCChhhHHHHhHhccCCCCcc-----------cChhHHH-
Q 036168 383 -------TDEHYWEYVRDNEIWKLEQKKNDILPALRLSYDQLPPHLKQCFAYCSIFPKDYD-----------FTSVLLI- 443 (846)
Q Consensus 383 -------~~~~~w~~~~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~-----------~~~~~li- 443 (846)
-+.+....+... +...+..++...+..+..+.....+.. +++..+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 112222222111 112234455555565555442222221 2222221
Q ss_pred ---HHHHHcCCCCCCCCCCCHHHHHHHHHH-HHHhcCCccc
Q 036168 444 ---RFWMAHGLLQSPNENEEPENIGVRYLN-ELLSRSFFQD 480 (846)
Q Consensus 444 ---~~w~a~g~i~~~~~~~~~e~~~~~~l~-~L~~~~ll~~ 480 (846)
.+-+..|++.....+....+.+..|++ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 234556666544444555666777776 6777777663
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1e-10 Score=111.73 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=72.7
Q ss_pred eeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
.+.++++++.+..+|..+. ++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567777777776665433 57777777766533333334566777777777776533222333566677777777766
Q ss_pred cccccccc-CCCCCCCCEeccccccCcccchh-hccCCCCcCEEEeecCC
Q 036168 659 QKSLLESG-IGCLSSLRFLMISDCENLEYLFD-DIDQLCVLRTIFIADCP 706 (846)
Q Consensus 659 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 706 (846)
.++.++.. +..+++|++|++++|... .+|. .+..+++|+.|++++|+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 66654433 455666666666665433 3332 23555666666666554
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.8e-12 Score=126.63 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=108.5
Q ss_pred HHhhccCCceeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCC
Q 036168 570 TSCISKSQFLRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVN 649 (846)
Q Consensus 570 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 649 (846)
+..+.++++|++|+|++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCC
Confidence 346788999999999999999888 89999999999999885 66889888889999999999986 55566 6889999
Q ss_pred CcEEEecccccccccc--cCCCCCCCCEeccccccCcccchh----------hccCCCCcCEEE
Q 036168 650 LRMFVVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYLFD----------DIDQLCVLRTIF 701 (846)
Q Consensus 650 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~ 701 (846)
|++|++++|.+..++. .+..+++|++|++++|......|. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999986654 688999999999999865444333 278899999997
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=5.4e-10 Score=118.32 Aligned_cols=186 Identities=15% Similarity=0.163 Sum_probs=117.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|++..++.+..++... ....+.|+|++|+||||+|+.+++...........++++.+...... .+++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID-VVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH-HHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH-HHHHHH
Confidence 56899999999999998653 22338899999999999999998742111100123344333322221 122222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHH-HHHhCCCCC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKV-ASIMGTMRG 321 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~~~~~~~ 321 (846)
..+.... ..+ .+++.++|+||++......++.+...+.....++.+|+||+...- ...... +
T Consensus 94 ~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r 157 (323)
T 1sxj_B 94 KHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--Q 157 (323)
T ss_dssp HHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--T
T ss_pred HHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh--h
Confidence 2211000 011 345889999999887766677777777655567788888876431 111111 1
Q ss_pred CCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchH-HHHH
Q 036168 322 TAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLA-VRTL 375 (846)
Q Consensus 322 ~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~ 375 (846)
...+.+.+++.++..+++...+...+...+ .+.+..|++.++|.|.. +..+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 237999999999999999987744332222 35678899999999954 4444
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.7e-10 Score=120.81 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=50.6
Q ss_pred CCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccc-eEEccCCCCCCCCc
Q 036168 694 LCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLR-KLFVEGLPPLLELP 771 (846)
Q Consensus 694 l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~-~l~l~~~~~l~~l~ 771 (846)
+++|+.|+|++|. +..+|. .|.+|++|++|++.+| ++. +....+ ..+.+|+ .+.+.. .+..++
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~-----I~~~aF-----~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKT-----IGQRVF-----SNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCE-----ECTTTT-----TTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cce-----ehHHHh-----hCChhccEEEEEcc--cceEEc
Confidence 6677777777664 445543 3667777777777665 220 001000 0122355 555543 334443
Q ss_pred hhhhcCCCCccceeecccccccccCCcCCCCCCCcceee
Q 036168 772 QWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLA 810 (846)
Q Consensus 772 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 810 (846)
...+ ..|++|+.|++++|.....-+..|.++++|+.|+
T Consensus 290 ~~aF-~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAF-MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTT-TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhh-hCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 3221 4566666666655533333333455566666554
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=6.7e-10 Score=106.01 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=100.4
Q ss_pred ccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccccc-CCCCCCCCEeccc
Q 036168 601 HLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESG-IGCLSSLRFLMIS 679 (846)
Q Consensus 601 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 679 (846)
+.+.++++++. +..+|..+ .++|++|++++|......+..+..+++|++|++++|.++.++.. +..+++|++|+++
T Consensus 8 ~~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45788888664 67777544 47999999999875444445578999999999999999977654 6899999999999
Q ss_pred cccCcccchhhccCCCCcCEEEeecCCCCcccccc-ccCCCCcCeEecccCc
Q 036168 680 DCENLEYLFDDIDQLCVLRTIFIADCPRLISLPPA-VKYLSSLETLMLEDCE 730 (846)
Q Consensus 680 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~ 730 (846)
+|......+..+..+++|+.|++++|. +..+|.. +..+++|++|++++|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 987655445567899999999999985 4566654 5789999999999985
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.3e-09 Score=103.43 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=61.4
Q ss_pred eEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCcccccc-ccccCCCcEEEeccc
Q 036168 580 RVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKD-IRYLVNLRMFVVSTK 658 (846)
Q Consensus 580 ~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~ 658 (846)
+.++++++.+..+|..+. ++|++|+|++|......|..|..+++|++|+|++|. +..+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 567777777777776554 677777777665444445566677777777777665 3344433 456666666666666
Q ss_pred cccccccc-CCCCCCCCEecccccc
Q 036168 659 QKSLLESG-IGCLSSLRFLMISDCE 682 (846)
Q Consensus 659 ~~~~~~~~-~~~l~~L~~L~l~~~~ 682 (846)
.+..+|.. +..+++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 66655443 5555555555555543
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=5.8e-09 Score=110.54 Aligned_cols=190 Identities=11% Similarity=0.092 Sum_probs=119.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC-CeeEEEEecCcccHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF-KLKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 241 (846)
-.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++..... .+ ...+.+..+...... .++.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchH-HHHH
Confidence 356899999999999998763 23348999999999999999998742111 11 112333322211111 1111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHH-HHHhCCCC
Q 036168 242 IIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKV-ASIMGTMR 320 (846)
Q Consensus 242 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~~~~~~ 320 (846)
.+...... .....+++.++|+|+++......++.+...+.....++++|+||....- ......
T Consensus 96 ~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s-- 159 (327)
T 1iqp_A 96 KVKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-- 159 (327)
T ss_dssp HHHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh--
Confidence 11111000 0011256789999999887777777788777666667888888876531 111111
Q ss_pred CCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhhh
Q 036168 321 GTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSLL 379 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 379 (846)
+...+.+.+++.++..+++...+...+.. -..+....|++.++|.|..+..+...+
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 12268999999999999999877543322 223567889999999998765554433
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.4e-09 Score=102.91 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=63.9
Q ss_pred eeEEEeCCCChhhhhhhhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 579 LRVIDLSDSAIEVLSREIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 579 L~~L~L~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
.+.++++++.+..+|..+. ++|++|+|++|......|..|..+++|++|+|++|......+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4577777777777776553 67777777776544444566777777777777776533322333466667777777666
Q ss_pred ccccccc-cCCCCCCCCEecccccc
Q 036168 659 QKSLLES-GIGCLSSLRFLMISDCE 682 (846)
Q Consensus 659 ~~~~~~~-~~~~l~~L~~L~l~~~~ 682 (846)
.++.++. .+..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6665544 25556666666665543
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.3e-08 Score=104.79 Aligned_cols=178 Identities=12% Similarity=0.014 Sum_probs=108.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---cC--CeeEEEEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---HF--KLKIWICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~ 238 (846)
..+.||+++.++|...|...-.+ .....+.|+|++|+|||++++.+++...... .. -..+++++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 34899999999999887654322 3467889999999999999999998542211 11 13567777777888999
Q ss_pred HHHHHHHhcCCCCCCC-CHHHHHHHHHHH--hcCceEEEEeeccCCCChhhHHHHHHhhC---CCCCCcEEEEeCCChH-
Q 036168 239 MTKIIKSITGQNPGDL-DTDQLRRILRDR--LNGEIYLLVMDDVWNEDPKVWDELKSLLL---GSAKGSKILVTTRSNK- 311 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~iiiTtR~~~- 311 (846)
+..|++++.+...... ..+.+...+... -.+++++++||+++... .-+.+..++. .......||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 9999999965532222 233333333321 24678999999997643 2233444332 1111223444444321
Q ss_pred ----HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 312 ----VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 312 ----~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
+............+.+.+++.++-.+++..++..
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1111111111136899999999999999988743
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.86 E-value=3.4e-08 Score=106.76 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=118.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.+++|++..++.+...+... ...+.+.|+|++|+||||+|+.+++.......+. ...+... . ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~---~-~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC---D-NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS---H-HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc---H-HHHHHh
Confidence 45999999999999999653 2235788999999999999999987432111110 0000000 0 011111
Q ss_pred HH-------hcCC-CCCCCCHHHHHHHHHHH-hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HH
Q 036168 244 KS-------ITGQ-NPGDLDTDQLRRILRDR-LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VA 313 (846)
Q Consensus 244 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~ 313 (846)
.. +... .........+.+.+... ..+++.++|+||++..+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000 01111222222222111 135678999999988777777888888776666677777776543 11
Q ss_pred HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 314 SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
..... +...+.+.+++.++..+++...+...+...+ .+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 11111 1247899999999999999877644332222 3566789999999999876654
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=2.4e-08 Score=108.17 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=154.2
Q ss_pred hhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCcccccchhhhcC
Q 036168 545 LLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKLPNSICEL 623 (846)
Q Consensus 545 ~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 623 (846)
.+.++ +|+.+.+..+ . ..+-..+|.++ +|+.+.|.+ .+..++ ..|.+|.+|+.++|.+|. +..+|.....+
T Consensus 131 aF~~~-~L~~i~l~~~-i---~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-L---KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVY 202 (401)
T ss_dssp TTTTC-CCSEEECCTT-C---CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTT
T ss_pred hcccC-CccEEEeCCC-c---cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEee
Confidence 34454 6888887632 1 22334566665 689999886 555554 568889999999998664 66676655557
Q ss_pred CCCcEEecCCcCCCccc-cccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccc-hhhccCCCCcCEEE
Q 036168 624 HSLQTVCLGGCRELEEL-PKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYL-FDDIDQLCVLRTIF 701 (846)
Q Consensus 624 ~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 701 (846)
.+|+.+.+..+ +..+ ...|.++++|+.+++..+....-...|.+ .+|+.+.+.. .+..+ ...|.+|++|+.+.
T Consensus 203 ~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEE
Confidence 89999999753 4444 45678899999999987633333344555 7899998843 23333 56788899999999
Q ss_pred eecCCCC----ccc-cccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhc
Q 036168 702 IADCPRL----ISL-PPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQ 776 (846)
Q Consensus 702 l~~~~~~----~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~ 776 (846)
+.++... ..+ +..|.+|++|+.+.+.++ ++.. ....+ ..+.+|+.+.|.. ++..++...+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I-----~~~aF-----~~c~~L~~l~lp~--~l~~I~~~aF- 342 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL-----GQGLL-----GGNRKVTQLTIPA--NVTQINFSAF- 342 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE-----CTTTT-----TTCCSCCEEEECT--TCCEECTTSS-
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE-----hhhhh-----cCCCCccEEEECc--cccEEcHHhC-
Confidence 9876432 123 345888999999998743 2200 11111 1123566776643 3445544332
Q ss_pred CCCCccceeecccccccccCCcCCCCCC-CcceeeccCCc
Q 036168 777 GSTKTLKTLIIRNCPNFMALPESLRNLE-ALETLAIGGCP 815 (846)
Q Consensus 777 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~l~~c~ 815 (846)
..+ +|+.|.+.+|......+..+..++ +++.|.+-.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 556 888888888754444444556664 67788776553
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=1e-08 Score=97.16 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=56.7
Q ss_pred CeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccccc-CCCCCCCCEeccccc
Q 036168 603 RYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESG-IGCLSSLRFLMISDC 681 (846)
Q Consensus 603 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 681 (846)
+.+++++|. ++.+|..+. ++|++|+|++|......|..+..+++|+.|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566666543 556665443 6667777766654444455566666666666666666655443 355666666666654
Q ss_pred cCcccchh-hccCCCCcCEEEeecCC
Q 036168 682 ENLEYLFD-DIDQLCVLRTIFIADCP 706 (846)
Q Consensus 682 ~~~~~~~~-~l~~l~~L~~L~l~~~~ 706 (846)
... .+|. .+..+++|+.|++++|+
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCC
Confidence 433 2332 35555555555555553
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=1.1e-08 Score=96.72 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=49.2
Q ss_pred cCeeeccCCCcccccchhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccccccccccc-CCCCCCCCEecccc
Q 036168 602 LRYLDLSGHDKIKKLPNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESG-IGCLSSLRFLMISD 680 (846)
Q Consensus 602 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 680 (846)
.+.+++++|. ++.+|..+ .++|++|+|++|......|..+..+++|++|++++|.++.++.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4556666543 44455433 25566666665553333344455555555555555555544332 34555555555555
Q ss_pred ccCcccchhhccCCCCcCEEEeecC
Q 036168 681 CENLEYLFDDIDQLCVLRTIFIADC 705 (846)
Q Consensus 681 ~~~~~~~~~~l~~l~~L~~L~l~~~ 705 (846)
|......+..+..+++|+.|+|++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 4332222223444445555555444
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=8.1e-08 Score=103.98 Aligned_cols=242 Identities=12% Similarity=0.153 Sum_probs=164.0
Q ss_pred cccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccc-hhhhcCC
Q 036168 547 SDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLP-NSICELH 624 (846)
Q Consensus 547 ~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~ 624 (846)
..+..+.++.+... . ..+...+|.++ +|+.+.|.++ +..++. .|.++ +|+.+.+.. . +..++ ..|.+|+
T Consensus 110 ~~~~~l~~i~ip~~-i---~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~-l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 110 EILKGYNEIILPNS-V---KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-T-LEQLKEDIFYYCY 180 (401)
T ss_dssp EECSSCSEEECCTT-C---CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-T-CCEECSSTTTTCT
T ss_pred EecCCccEEEECCc-c---CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-C-ccEehHHHhhCcc
Confidence 34467777777632 1 23334567776 7999999876 665553 46664 799999984 3 55554 6788999
Q ss_pred CCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccchh-hccCCCCcCEEEee
Q 036168 625 SLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYLFD-DIDQLCVLRTIFIA 703 (846)
Q Consensus 625 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~ 703 (846)
+|+.+++.+|. +..++...-.+.+|+.+.+..+....-...|.++++|+.+.+..+ +..++. .|.+ .+|+.+.+.
T Consensus 181 ~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCEEECTTSC-CSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE
T ss_pred cCCeeecCCCc-ceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC
Confidence 99999999865 566665544478999999986633344567889999999999863 444443 4545 799999996
Q ss_pred cCCCCccc-cccccCCCCcCeEecccCcccchhhhhhcccccccccCCCCCcccceEEccCCCCCCCCchhhhcCCCCcc
Q 036168 704 DCPRLISL-PPAVKYLSSLETLMLEDCESLTLNLKIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTL 782 (846)
Q Consensus 704 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L 782 (846)
++ +..+ ...|.+|++|+.+.+.++...... ...+... ....+.+|+.+.+.. .+..++...+ ..|++|
T Consensus 257 ~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~-~~~I~~~-----aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L 325 (401)
T 4fdw_A 257 NG--VTNIASRAFYYCPELAEVTTYGSTFNDDP-EAMIHPY-----CLEGCPKLARFEIPE--SIRILGQGLL-GGNRKV 325 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEESSCCCCCT-TCEECTT-----TTTTCTTCCEECCCT--TCCEECTTTT-TTCCSC
T ss_pred CC--ccEEChhHhhCCCCCCEEEeCCccccCCc-ccEECHH-----HhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCc
Confidence 53 5555 456889999999999876422000 0001111 111234677777763 4666655443 678999
Q ss_pred ceeecccccccccC-CcCCCCCCCcceeeccCCc
Q 036168 783 KTLIIRNCPNFMAL-PESLRNLEALETLAIGGCP 815 (846)
Q Consensus 783 ~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~c~ 815 (846)
+.|.|.++ ++.+ +..|.++ +|+.|.+.+|.
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 99999765 4444 4567888 99999999874
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=117.23 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=36.5
Q ss_pred CCCcEEEeccccccc-----ccccCCCCCCCCEeccccccCcc----cchhhccCCCCcCEEEeecCCCCc----ccccc
Q 036168 648 VNLRMFVVSTKQKSL-----LESGIGCLSSLRFLMISDCENLE----YLFDDIDQLCVLRTIFIADCPRLI----SLPPA 714 (846)
Q Consensus 648 ~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~l~~~ 714 (846)
++|+.|++++|.++. ++..+..+++|++|+|++|.... .++..+..+++|+.|+|++|.... .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555544431 22223344455555555543221 123334445555555555554321 22233
Q ss_pred ccCCCCcCeEecccC
Q 036168 715 VKYLSSLETLMLEDC 729 (846)
Q Consensus 715 ~~~l~~L~~L~l~~~ 729 (846)
+..+++|++|+|++|
T Consensus 235 L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 235 AREHPSLELLHLYFN 249 (372)
T ss_dssp HHHCSSCCEEECTTS
T ss_pred HHhCCCCCEEeccCC
Confidence 334455555555555
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=2.5e-09 Score=114.70 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=108.2
Q ss_pred cccceEEEeccCCCc-chhHHHHHhhcc-CCceeEEEeCCCChhh--hhhhhcccCccCeeeccCCCcccccchhh----
Q 036168 549 SRRARTILFPINDEK-TNQSILTSCISK-SQFLRVIDLSDSAIEV--LSREIGNLKHLRYLDLSGHDKIKKLPNSI---- 620 (846)
Q Consensus 549 ~~~lr~l~l~~~~~~-~~~~~~~~~~~~-~~~L~~L~L~~~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~lp~~~---- 620 (846)
.+.++.|.+..+... .....+...+.. .++|+.|+|++|.+.. +..-...+++|++|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777755543 122333444443 3689999999998862 22223446789999999886443322223
Q ss_pred -hcCCCCcEEecCCcCCCc----cccccccccCCCcEEEeccccccc-----ccccCCCCCCCCEeccccccCcc----c
Q 036168 621 -CELHSLQTVCLGGCRELE----ELPKDIRYLVNLRMFVVSTKQKSL-----LESGIGCLSSLRFLMISDCENLE----Y 686 (846)
Q Consensus 621 -~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~ 686 (846)
...++|++|+|++|.... .++..+..+++|++|+|++|.+.. +...+..+++|++|+|++|.... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 246789999999987432 245556778899999999998762 34556777899999999986543 2
Q ss_pred chhhccCCCCcCEEEeecCCCC
Q 036168 687 LFDDIDQLCVLRTIFIADCPRL 708 (846)
Q Consensus 687 ~~~~l~~l~~L~~L~l~~~~~~ 708 (846)
++..+..+++|+.|+|++|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4455667889999999999653
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.78 E-value=3.4e-08 Score=104.18 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=115.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 242 (846)
.+++|++..++.+..++... ....+.|+|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 46899999999999888652 223388999999999999999987421 11111 1223333321110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHH--h-cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDR--L-NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGT 318 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~ 318 (846)
.........+... + .+++.++|+|+++.......+.+...+.....+.++|+||.... +......
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111111111 1 25678999999987766666667777766666778888876643 1111111
Q ss_pred CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 319 MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 319 ~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+...+.+.+++.++..+++...+...+...+ .+....+++.++|.+..+....
T Consensus 152 --r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 --RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp --TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred --hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1237999999999999999888754433222 3566889999999998655443
No 164
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=1.5e-08 Score=107.31 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=96.0
Q ss_pred CCceeEEEeCCCChhhhhh-hhcccCccCeeeccCCCcccccchhhhcCCCCcEEecCCc-----------------CCC
Q 036168 576 SQFLRVIDLSDSAIEVLSR-EIGNLKHLRYLDLSGHDKIKKLPNSICELHSLQTVCLGGC-----------------REL 637 (846)
Q Consensus 576 ~~~L~~L~L~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~-----------------~~~ 637 (846)
|++|+.|+|.+ .+..++. .|.+|++|+.|++++|.....-+..|..+.++.++.+... ..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777776 6665543 4667777777777766533333344555555555544321 000
Q ss_pred c---------cccc---------------------------cc-cccCCCcEEEecccccccccc-cCCCCCCCCEeccc
Q 036168 638 E---------ELPK---------------------------DI-RYLVNLRMFVVSTKQKSLLES-GIGCLSSLRFLMIS 679 (846)
Q Consensus 638 ~---------~~p~---------------------------~~-~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 679 (846)
. .++. .+ ..+++|+.|++++|.++.++. .|.+|++|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 0000 00 137889999999888876654 57888999999998
Q ss_pred cccCcccc-hhhccCCCCcC-EEEeecCCCCcccc-ccccCCCCcCeEecccCc
Q 036168 680 DCENLEYL-FDDIDQLCVLR-TIFIADCPRLISLP-PAVKYLSSLETLMLEDCE 730 (846)
Q Consensus 680 ~~~~~~~~-~~~l~~l~~L~-~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~ 730 (846)
++ +..+ ...|.++++|+ .|.+.+ .+..++ ..|.+|++|+.|+++++.
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred cc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc
Confidence 75 4444 45688899998 999987 455554 568889999999987664
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.69 E-value=5e-07 Score=95.96 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=111.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-.+++|++..++++..++....... .....|.|+|++|+|||++|+.+++. .... .+.++.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~--------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIE--------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCC---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhcc---------
Confidence 3569999999999998886531111 23456899999999999999999763 2222 2233322111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC------------------CCcEEE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA------------------KGSKIL 304 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 304 (846)
........+.. ..+..+|+||+++.........+...+.... ++..+|
T Consensus 93 ------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 93 ------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11112222221 2356799999998777666666666654321 124566
Q ss_pred EeCCChHH-HHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhh
Q 036168 305 VTTRSNKV-ASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGS 377 (846)
Q Consensus 305 iTtR~~~~-~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 377 (846)
.+|..... ...... .....+.+.+++.++...++...+...+.. -..+....|++.+.|.|-.+..+..
T Consensus 159 ~atn~~~~l~~~L~~-R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 159 GATTRAGMLSNPLRD-RFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEESCGGGSCHHHHT-TCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EeCCCccccCHHHHh-hcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 66655321 111111 112479999999999999998877543322 2235677889999999966655443
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.6e-08 Score=104.49 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=60.1
Q ss_pred EEeCCC-ChhhhhhhhcccCccCeeeccC-CCcccccc-hhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEeccc
Q 036168 582 IDLSDS-AIEVLSREIGNLKHLRYLDLSG-HDKIKKLP-NSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTK 658 (846)
Q Consensus 582 L~L~~~-~~~~l~~~~~~l~~L~~L~L~~-~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 658 (846)
++++++ .+..+|. +..+++|++|+|++ |. ++.+| ..|+.|++|++|+|++|......|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 466665 6666666 66666777777764 43 34333 45666777777777766544444455666777777777777
Q ss_pred ccccccccCCCCCCCCEecccccc
Q 036168 659 QKSLLESGIGCLSSLRFLMISDCE 682 (846)
Q Consensus 659 ~~~~~~~~~~~l~~L~~L~l~~~~ 682 (846)
.++.+|..+....+|+.|+|.+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccceeCHHHcccCCceEEEeeCCC
Confidence 666555443333336777766654
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.63 E-value=1e-07 Score=95.91 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=103.1
Q ss_pred Cccccc---hHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGR---DEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
.+|+|. +..++.+..+... ...+.+.|+|++|+||||+|+.+++.. ......+.|+++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH-----
Confidence 456763 3556666666643 234688999999999999999998743 222334566665432110
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhh--HHHHHHhhCCC-CCC-cEEEEeCCCh------
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKV--WDELKSLLLGS-AKG-SKILVTTRSN------ 310 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iiiTtR~~------ 310 (846)
+. +.+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -~~-----------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -ST-----------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CG-----------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HH-----------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 000 011 345799999997653322 33344433211 112 2477777632
Q ss_pred ---HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhhh
Q 036168 311 ---KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGSL 378 (846)
Q Consensus 311 ---~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 378 (846)
.+...+.. ...+.+.+++.++..+++...+...+...+ .+....+++.++|.+..+..+...
T Consensus 155 ~~~~l~~r~~~---~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHW---GLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHH---SEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhc---CceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHHH
Confidence 12211111 137999999999999999988754333222 356678999999998777655443
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=1.9e-07 Score=100.02 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=117.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTK 241 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 241 (846)
-.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.++.+....... +.+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 3568999999999999986531 23388999999999999999987532111121 123333333222222 222
Q ss_pred HHHHhcCC-CCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCC
Q 036168 242 IIKSITGQ-NPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTM 319 (846)
Q Consensus 242 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~ 319 (846)
.+...... ....... .....-.+++-+|++|+++.........+...+.......++|++|.... +......
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s- 182 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS- 182 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc-
Confidence 22222111 0000000 00011123557999999987766666777777665555667777775542 1111111
Q ss_pred CCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 320 RGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 320 ~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+...+.+.+++.++....+...+...+...+ .+..+.|++.++|.|..+..+.
T Consensus 183 -R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 183 -QCSKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp -HSEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred -cCceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1126899999999999999887754333222 3567899999999998755443
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=5.1e-08 Score=103.50 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCCCCEeccccccCcccchhhc---cCCCCcCEEEeecCCCCc----cccccccCCCCcCeEecccC
Q 036168 670 LSSLRFLMISDCENLEYLFDDI---DQLCVLRTIFIADCPRLI----SLPPAVKYLSSLETLMLEDC 729 (846)
Q Consensus 670 l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~ 729 (846)
+++|++|++.+|......+..+ ..+++|+.|+|+.|.... .++..+.++++|+.|+|++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4555555555444332111111 234555555555543221 12333334455555555554
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=8.5e-08 Score=101.81 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=78.6
Q ss_pred CceeEEEeCCCChh---------hhhhhhcccCccCeeeccCCCc---------ccccchhhhcCCCCcEEecCCcCCCc
Q 036168 577 QFLRVIDLSDSAIE---------VLSREIGNLKHLRYLDLSGHDK---------IKKLPNSICELHSLQTVCLGGCRELE 638 (846)
Q Consensus 577 ~~L~~L~L~~~~~~---------~l~~~~~~l~~L~~L~L~~~~~---------~~~lp~~~~~l~~L~~L~l~~~~~~~ 638 (846)
..++.|.+...... .+..++..+++|+.|.+.+... ...++..+..+++|+.|++++|...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 45667777643322 2344566788999998865321 1134455666778888888776322
Q ss_pred cccccccccCCCcEEEecccccccc-cccC--CCCCCCCEeccccccC-------cccchhhc--cCCCCcCEEEeecCC
Q 036168 639 ELPKDIRYLVNLRMFVVSTKQKSLL-ESGI--GCLSSLRFLMISDCEN-------LEYLFDDI--DQLCVLRTIFIADCP 706 (846)
Q Consensus 639 ~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~--~~l~~L~~L~l~~~~~-------~~~~~~~l--~~l~~L~~L~l~~~~ 706 (846)
.++. + .+++|++|++..|.+..- ...+ ..+++|+.|+|+.+.+ +..+...+ ..+|+|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2333 3 367777777776665411 1112 2566777777643211 11111122 235666666666664
Q ss_pred CCccccccc---cCCCCcCeEecccC
Q 036168 707 RLISLPPAV---KYLSSLETLMLEDC 729 (846)
Q Consensus 707 ~~~~l~~~~---~~l~~L~~L~l~~~ 729 (846)
.....+..+ ..+++|++|+|+.|
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred CchHHHHHHHhCccCCCCCEEECCCC
Confidence 332221111 23556666666554
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=2.2e-07 Score=89.69 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=83.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc-----cCCeeEEEEecCcccHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE-----HFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~~~~~~~~~ 237 (846)
-..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++...... .....+++++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 356899999999999998652 245678999999999999999987421110 112233443211
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHH---h--cCceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEE
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDR---L--NGEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKIL 304 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ii 304 (846)
+. .+. .........+.+. + .+++.+||+||++... ......+...+.. .+..+|
T Consensus 89 ~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i 155 (195)
T 1jbk_A 89 LV-------AGA----KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCV 155 (195)
T ss_dssp HH-------TTT----CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEE
T ss_pred Hh-------ccC----CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEE
Confidence 10 000 0111111111111 1 3567899999996542 1223344444432 234577
Q ss_pred EeCCChHHHHHhCC----CCCCCcEecCCCChHHHHHH
Q 036168 305 VTTRSNKVASIMGT----MRGTAGYKLEGLPYESCLSL 338 (846)
Q Consensus 305 iTtR~~~~~~~~~~----~~~~~~~~l~~l~~~~a~~L 338 (846)
+||........... ..+...+.+.+++.++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred EeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 77766543221100 01122578888888776654
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.52 E-value=6.4e-07 Score=92.56 Aligned_cols=189 Identities=20% Similarity=0.153 Sum_probs=102.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-.+++|.++.+++|.+.+...... +-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH--
Confidence 467899999999998887432000 0022456899999999999999999873 2211 2223221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------ChhhHHHHHHh---hC--CCCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPKVWDELKSL---LL--GSAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~--~~~~ 299 (846)
.. ........+...+......++.+|+||+++.. +......+... +. ....
T Consensus 89 ------------~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 89 ------------KK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------Hh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00 00001111222222233456689999999532 11122223222 22 2234
Q ss_pred CcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHH
Q 036168 300 GSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTL 375 (846)
Q Consensus 300 gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 375 (846)
+..||.||....... ..........+.+...+.++..+++...+.........+ ...++..+.| .|-.+..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 567788887553221 111111123689999999999999998875433222222 3566777766 45444443
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.7e-07 Score=98.71 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=111.3
Q ss_pred CccccchHHHHHHHHHH-hcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcch-hhh-c--cCCe---------------
Q 036168 164 SEIIGRDEDREKIIELL-MQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQ-SVQ-E--HFKL--------------- 223 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~-~~~-~--~f~~--------------- 223 (846)
.+++|.+..++.+..++ ... .... +.|+|+.|+||||+|+.++... ... + .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999998888887 331 2233 8999999999999999887621 000 0 0000
Q ss_pred -----eEEEEecCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC
Q 036168 224 -----KIWICVSEDF-EQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS 297 (846)
Q Consensus 224 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 297 (846)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111000 000012222222211100 00000 000 02335679999999887777777777777655
Q ss_pred CCCcEEEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 298 AKGSKILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 298 ~~gs~iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
..+..+|++|.+.. +...... +...+.+.+++.++..+.+...+...+...+ ..+.+..|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 55677888777532 2111111 1247999999999999999987754333212 02566889999999997665554
Q ss_pred h
Q 036168 377 S 377 (846)
Q Consensus 377 ~ 377 (846)
.
T Consensus 238 ~ 238 (354)
T 1sxj_E 238 E 238 (354)
T ss_dssp T
T ss_pred H
Confidence 3
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=6.3e-07 Score=100.54 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=110.4
Q ss_pred CCccccchHHHHHHHHHHhcCCC---------C--CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC
Q 036168 163 PSEIIGRDEDREKIIELLMQTND---------G--ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE 231 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~---------~--~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 231 (846)
-.+++|++..++++.+++..... + .....+.+.|+|++|+||||+|+.+++.. .+ .++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 35699999999999999865210 0 00134689999999999999999998743 22 233444444
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH--HHhcCceEEEEeeccCCCC---hhhHHHHHHhhCCCCCCcEEEEe
Q 036168 232 DFEQRQIMTKIIKSITGQNPGDLDTDQLRRILR--DRLNGEIYLLVMDDVWNED---PKVWDELKSLLLGSAKGSKILVT 306 (846)
Q Consensus 232 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--~~l~~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~~~gs~iiiT 306 (846)
..... .....+....... .......... ....+++.+||+|+++... ...+..+...+... +..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred cchHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 33332 2222222221110 0000000000 0123567899999996542 22334555554432 2335555
Q ss_pred CCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHH
Q 036168 307 TRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTL 375 (846)
Q Consensus 307 tR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 375 (846)
+.+...............+.+.+++.++..+++...+...+...++ +....|++.++|.+. ++..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 4432211100111223468999999999999998877554433233 346788999999554 44444
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.49 E-value=9.8e-07 Score=96.33 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=104.9
Q ss_pred CccccchHHH---HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDR---EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. .... ++.++.......-++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHH
Confidence 5689999888 7787888652 3467899999999999999999874 2222 222222211111122
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEE-EeCCChH--HHHHhC
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKIL-VTTRSNK--VASIMG 317 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-iTtR~~~--~~~~~~ 317 (846)
.++... ......+++.+|++|+++.......+.|...+... ...+| .||.+.. +.....
T Consensus 93 ~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 222111 01112467789999999877655556666666542 22333 3555543 111111
Q ss_pred CCCCCCcEecCCCChHHHHHHHHHhhccCCC----CCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 318 TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQ----HKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 318 ~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~----~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
. +...+.+.+++.++..+++.+.+..... ....-..+..+.|++.++|.+..+..+.
T Consensus 155 s--R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 S--RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp T--TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred C--ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 2237889999999999999887754111 1111224567888899999887665443
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.48 E-value=9.5e-07 Score=96.67 Aligned_cols=162 Identities=19% Similarity=0.159 Sum_probs=98.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCC--eeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK--LKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
...+.|+|++|+||||||+.+++. ....+. .+++++. ..+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567899999999999999999984 333332 2445543 23344444444321 11 22333344
Q ss_pred CceEEEEeeccCCCCh--hhHHHHHHhhCC-CCCCcEEEEeCCCh---------HHHHHhCCCCCCCcEecCCCChHHHH
Q 036168 269 GEIYLLVMDDVWNEDP--KVWDELKSLLLG-SAKGSKILVTTRSN---------KVASIMGTMRGTAGYKLEGLPYESCL 336 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtR~~---------~~~~~~~~~~~~~~~~l~~l~~~~a~ 336 (846)
.++-+|++||++.... ...+.+...+.. ...|..||+||.+. .+...+.. ...+.+.+++.++..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~---g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM---GLVAKLEPPDEETRK 269 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS---SBCCBCCCCCHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC---CeEEEeCCCCHHHHH
Confidence 3667999999965432 233444444321 23466788888763 22222322 136889999999999
Q ss_pred HHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 337 SLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 337 ~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+++.+.+...+...++ ++...|++.+.|.+..+..+
T Consensus 270 ~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 270 SIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 9999887543332222 44678889999998766544
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=2.6e-06 Score=91.56 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=112.4
Q ss_pred CCccccchHHHHHH---HHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEec----CcccH
Q 036168 163 PSEIIGRDEDREKI---IELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVS----EDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~ 235 (846)
.+.++|++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+++... .... .+.+... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccch
Confidence 45799999887764 44444321 2236889999999999999999987432 1111 1222211 12233
Q ss_pred HHHHHHHHHHhcCC---------------------C-------CC--CCCHHHHHHHHHHHh-----cCc----eEEEEe
Q 036168 236 RQIMTKIIKSITGQ---------------------N-------PG--DLDTDQLRRILRDRL-----NGE----IYLLVM 276 (846)
Q Consensus 236 ~~~~~~i~~~l~~~---------------------~-------~~--~~~~~~~~~~l~~~l-----~~k----r~LlVl 276 (846)
.+.+.+.+....+. . .+ ......+...+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 33444443331110 0 00 000122222222211 233 359999
Q ss_pred eccCCCChhhHHHHHHhhCCCCCCcEEEEeCCC------------h-HHHHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 277 DDVWNEDPKVWDELKSLLLGSAKGSKILVTTRS------------N-KVASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 277 Ddv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~------------~-~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
|+++.........+...+...... .++++|.. . .+...... +...+.+.+++.++..+++...+
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHH
Confidence 999887777777777777654433 34444431 0 01011111 12358999999999999999887
Q ss_pred ccCCCCCCcchHHHHHHHHHhhC-CCchHHHHHhh
Q 036168 344 FKEGQHKHPNLVKIGEEIVKKCG-GIPLAVRTLGS 377 (846)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~~ 377 (846)
...+... ..+....|++.+. |.|..+..+..
T Consensus 273 ~~~~~~~---~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 273 EEEDVEM---SEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp HHTTCCB---CHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCCC---CHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5433322 2356778899998 88876655443
No 178
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=3.2e-07 Score=97.95 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=75.3
Q ss_pred CeeeccCCCcccccchhhhcCCCCcEEecCC-cCCCcccc-ccccccCCCcEEEeccccccccc-ccCCCCCCCCEeccc
Q 036168 603 RYLDLSGHDKIKKLPNSICELHSLQTVCLGG-CRELEELP-KDIRYLVNLRMFVVSTKQKSLLE-SGIGCLSSLRFLMIS 679 (846)
Q Consensus 603 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~-~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 679 (846)
..++.++++.+..+|. +..+++|++|+|++ |. +..+| ..|..+++|+.|+|++|.++.++ ..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3467776535778888 88899999999986 55 45544 67888999999999999888554 457889999999998
Q ss_pred cccCcccchhh-ccCCCCcCEEEeecCCC
Q 036168 680 DCENLEYLFDD-IDQLCVLRTIFIADCPR 707 (846)
Q Consensus 680 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 707 (846)
+|... .+|.. +..++ |+.|+|.+|..
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence 87554 45544 44444 89999988764
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.44 E-value=5.4e-06 Score=84.29 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=100.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCC------CcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGE------SETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.+++|.+..++++.+++....... ....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh---
Confidence 568999988887766543211000 023456889999999999999999873 2211 23333332111
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC------------h---hhHHHHHHhhCC--CCCC
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED------------P---KVWDELKSLLLG--SAKG 300 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~g 300 (846)
.........+...+.......+.+|++|+++... . .....+...+.. ...+
T Consensus 78 ------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0001111122222333334457899999996531 1 112223333322 2235
Q ss_pred cEEEEeCCChHHHH-HhCC-CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHH
Q 036168 301 SKILVTTRSNKVAS-IMGT-MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTL 375 (846)
Q Consensus 301 s~iiiTtR~~~~~~-~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 375 (846)
..||.||....... .... ..-...+.+...+.++..+++...+...+... ........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 56666776544221 1111 11124678899999999999988775433321 122234678888888754 44444
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.43 E-value=2.6e-06 Score=89.03 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=94.4
Q ss_pred ccccchHHHHHHHHHHhcCC----------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 165 EIIGRDEDREKIIELLMQTN----------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~----------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
.++|.+..++.|.+.+.... ... .....+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH--
Confidence 47888888888876654210 000 33457899999999999999988874322222211123333211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC---------ChhhHHHHHHhhCCCCCCcEEEE
Q 036168 235 QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE---------DPKVWDELKSLLLGSAKGSKILV 305 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iii 305 (846)
.+... ............+... +..+|++|+++.. .......+...+.....+..||.
T Consensus 109 ----------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ----------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 0111112222222222 3459999999733 45556667777766666778888
Q ss_pred eCCChHHHHHh--CC--C-CCCCcEecCCCChHHHHHHHHHhhccCC
Q 036168 306 TTRSNKVASIM--GT--M-RGTAGYKLEGLPYESCLSLFMKCAFKEG 347 (846)
Q Consensus 306 TtR~~~~~~~~--~~--~-~~~~~~~l~~l~~~~a~~L~~~~a~~~~ 347 (846)
||......... .. . .....+.+.+++.++..+++...+...+
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC
Confidence 88654321111 00 0 0013789999999999999988875433
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.40 E-value=2.2e-06 Score=90.25 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=107.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
-.+++|.+..++.+..++... ....++.++|++|+|||++|+.+++.. . ...+.++.+.. . .+.++..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~-~~~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-K-IDFVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-C-HHHHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-C-HHHHHHH
Confidence 357899999999999999753 234678889999999999999998742 1 12344443321 1 1222222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-hhhHHHHHHhhCCCCCCcEEEEeCCChHH-HHHhCCCC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-PKVWDELKSLLLGSAKGSKILVTTRSNKV-ASIMGTMR 320 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iiiTtR~~~~-~~~~~~~~ 320 (846)
+....... ...+++-++++|+++... ....+.+...+.....+.++|+||....- ......
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s-- 155 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS-- 155 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH--
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh--
Confidence 11110000 012367899999997765 55666666666544456688888876431 110000
Q ss_pred CCCcEecCCCChHHHHHH-------HHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 321 GTAGYKLEGLPYESCLSL-------FMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 321 ~~~~~~l~~l~~~~a~~L-------~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
+...+.+.+.+.++-.++ +...+...+...++ .+....|++.++|.+..+...
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 123689999998874333 33223222222111 256678889998887754433
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.38 E-value=9.2e-06 Score=85.60 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc--------------------cCCeeEEEEe
Q 036168 170 DEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE--------------------HFKLKIWICV 229 (846)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 229 (846)
++..+.+...+... .-.+.+.++|++|+||||+|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566777777542 2345789999999999999999886421110 112 122211
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEE
Q 036168 230 SEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR----LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILV 305 (846)
Q Consensus 230 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iii 305 (846)
.. .......+++.+.+... ..+++-++|+|+++.........+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 01122333333222221 124577999999988777777788888877666777777
Q ss_pred eCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHh
Q 036168 306 TTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLG 376 (846)
Q Consensus 306 TtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 376 (846)
+|.++. +...+.. +...+.+.+++.++..+++.... . .+ .+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~--~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRS--RCRLHYLAPPPEQYAVTWLSREV---T--MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHC---C--CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhh--cceeeeCCCCCHHHHHHHHHHhc---C--CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 776653 2222222 23479999999999999988765 1 11 2456789999999998775554
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=6.5e-06 Score=84.17 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=92.7
Q ss_pred CccccchHHHHHHHH-------HHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIE-------LLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
..++|.....+++.. .+.... . ...+.+.|+|++|+|||++|+.+++. .. +. .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~-~--~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD-R--TPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS-S--CSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC-C--CCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH----
Confidence 456777776666555 332211 1 44678999999999999999999874 22 22 222222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC----------ChhhHHHHHHhhCC---CCCCcEE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE----------DPKVWDELKSLLLG---SAKGSKI 303 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 303 (846)
+.+.. .......+...+......++.+|+||+++.. .....+.+...+.. .+....|
T Consensus 101 ---------~~g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0000011222233333466889999998542 22223334444432 2233456
Q ss_pred EEeCCChHHHHHhCCCCC-CCcEecCCCCh-HHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC
Q 036168 304 LVTTRSNKVASIMGTMRG-TAGYKLEGLPY-ESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG 367 (846)
Q Consensus 304 iiTtR~~~~~~~~~~~~~-~~~~~l~~l~~-~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g 367 (846)
|.||.............+ ...+.+++++. ++...++.... . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC---HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC---HHHHHHHHHHhcC
Confidence 777777655443211111 34688899988 66666655432 1 11 2456788888887
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.31 E-value=1.2e-05 Score=84.55 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=89.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
...+.|+|++|+||||||+.+++..... .+ .++++++ .+....+...+... .... +...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4578899999999999999999843211 22 2445543 23333333333211 1122 222222 3
Q ss_pred eEEEEeeccCCCCh--hhHHHHHHhhCC-CCCCcEEEEeCCCh---------HHHHHhCCCCCCCcEecCCCChHHHHHH
Q 036168 271 IYLLVMDDVWNEDP--KVWDELKSLLLG-SAKGSKILVTTRSN---------KVASIMGTMRGTAGYKLEGLPYESCLSL 338 (846)
Q Consensus 271 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iiiTtR~~---------~~~~~~~~~~~~~~~~l~~l~~~~a~~L 338 (846)
..+|++||++.... ...+.+...+.. ...|..||+||... .+...+.. ...+.+.+ +.++..++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~---~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG---GILVEIEL-DNKTRFKI 174 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT---SEEEECCC-CHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC---ceEEEeCC-CHHHHHHH
Confidence 56999999966432 223344444321 12355788877643 12222221 13689999 99999999
Q ss_pred HHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHH
Q 036168 339 FMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVR 373 (846)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (846)
+...+...+...+ .++...|++.+ |.+-.+.
T Consensus 175 l~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 175 IKEKLKEFNLELR---KEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHHH
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHHH
Confidence 9988754433222 35567888888 7765443
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=5.3e-06 Score=87.90 Aligned_cols=179 Identities=13% Similarity=0.197 Sum_probs=109.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCC-eeEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFK-LKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 242 (846)
..++|.+..++.|...+... +...+.++|++|+||||+|+.++....- ..+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCccccc--------
Confidence 45789999899998888652 2233889999999999999999874211 1111 112222222111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh------cCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHH
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRL------NGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASI 315 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~ 315 (846)
.+.+.+.+.... .+.+-++|+|+++.......+.+...+.......++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 222222222111 23467899999977766666777777665555667777776542 1111
Q ss_pred hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 316 MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 316 ~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
... +...+.+.+++.++..+.+...+...+...+ .+..+.|++.++|.+.-+..+
T Consensus 157 i~s--R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 157 LLS--QCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp HHT--TSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHh--hceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 111 1236889999999999888877633332222 356678999999988754433
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.30 E-value=1.9e-05 Score=82.61 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHHhcC------CCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQT------NDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.+++|.++.++.|.+.+..+ -.+.....+.|.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence 56899999888888776311 001112346889999999999999999997420 11 12223332111
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-------Chh----hHHHHHHhhCC---CCCCcEE
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-------DPK----VWDELKSLLLG---SAKGSKI 303 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~~----~~~~l~~~l~~---~~~gs~i 303 (846)
. .........+...+...-..++.+|++|+++.. ... ....+...+.. ...+..|
T Consensus 84 ----------~-~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------S-KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------C-SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------h-hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0 111112222222222223456789999999642 011 11223333322 2344555
Q ss_pred EEeCCChHHH-HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC-chHHHHHhh
Q 036168 304 LVTTRSNKVA-SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI-PLAVRTLGS 377 (846)
Q Consensus 304 iiTtR~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 377 (846)
|.||..+... ..... .-...+.+...+.++..+++........... .......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6566543211 11111 1123688888899999999988763322211 124567889999886 444655543
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.30 E-value=6.2e-06 Score=87.77 Aligned_cols=191 Identities=15% Similarity=0.078 Sum_probs=104.1
Q ss_pred CccccchHHHHHHHHHHhcC---CC---CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQT---ND---GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.+++|.+..+++|.+.+... .+ +.....+.|.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc---
Confidence 56899999999998877421 00 00023567899999999999999999873 221 123444332111
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-----------hhhHHHHHHhhCC----CCCCcE
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-----------PKVWDELKSLLLG----SAKGSK 302 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 302 (846)
. ........+...+...-..++.+|+||+++... ......+...+.. ...+..
T Consensus 156 -----------~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 -----------K-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -----------S-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -----------c-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0 000001111112222223567899999984310 1122333333332 123445
Q ss_pred EEEeCCChH-HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHHhhh
Q 036168 303 ILVTTRSNK-VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTLGSL 378 (846)
Q Consensus 303 iiiTtR~~~-~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~ 378 (846)
||.||.... +...... .....+.+...+.++..+++...+...+... ..+....|++.+.| .+-.+..+...
T Consensus 224 vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 665665532 1111111 1123678888999999999887764332221 12456788888888 55566665443
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.27 E-value=1e-05 Score=84.88 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=105.0
Q ss_pred CCccccchHHHHHHHHHHhcC-------CCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLMQT-------NDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-.+++|.+..+++|.+.+... ..+. ...+.+.|+|++|+|||+||+.+++. .... .+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~----- 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH-----
Confidence 356899999999998877210 1111 23467899999999999999999873 2222 2223221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCceEEEEeeccCCCCh-----------hhHHHHHHhhC---CCCCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRI-LRDRLNGEIYLLVMDDVWNEDP-----------KVWDELKSLLL---GSAKG 300 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~g 300 (846)
++ .....+ ........ +...-..++.+|+||+++.... .....+...+. ....+
T Consensus 86 -~l----~~~~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----VSKWMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----HTTTGG------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----hhcccc------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 111000 11122222 2222245668999999964211 12233444433 23345
Q ss_pred cEEEEeCCChHHH-HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHHhh
Q 036168 301 SKILVTTRSNKVA-SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTLGS 377 (846)
Q Consensus 301 s~iiiTtR~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 377 (846)
..||.||..+... ..... .-...+.+...+.++-.+++...+....... .......|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666677654221 11111 1123678888999999999998874432211 12455788888887 4555555543
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=1.5e-06 Score=83.19 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-..++||+.+++++.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998652 2456789999999999999999874
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.25 E-value=1.7e-06 Score=78.95 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=71.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHH
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIK 244 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 244 (846)
.++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999988765432 2235789999999999999999874221 1112 22 555433221
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 245 SITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
.... ..+... +.-.|++|+++.........+...+.......+||.||...
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 1111 111111 22478999998887777777777775555556787777643
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.22 E-value=1.8e-05 Score=82.06 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=100.4
Q ss_pred CccccchHHHHHHHHHHhcCC------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.+++|.+..++.+.+.+.... .+-....+.+.|+|++|+||||+|+.+++.. ... .+.++.+.-.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~---- 91 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLT---- 91 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHh----
Confidence 568999999999988774310 0000124678999999999999999998732 211 2233332211
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCceEEEEeeccCCCC-----------hhhHHHHHHhh---CCC--CCC
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRI-LRDRLNGEIYLLVMDDVWNED-----------PKVWDELKSLL---LGS--AKG 300 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l---~~~--~~g 300 (846)
... . ......... +......++.+|++|+++... ......+...+ +.. +.+
T Consensus 92 ----------~~~-~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 92 ----------SKY-V-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp ----------SSS-C-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred ----------hcc-c-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 000 0 112222222 222224567899999995431 11111222222 211 134
Q ss_pred cEEEEeCCChH-----HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHH
Q 036168 301 SKILVTTRSNK-----VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRT 374 (846)
Q Consensus 301 s~iiiTtR~~~-----~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 374 (846)
..||.||..+. +...+ ...+.+...+.++..+++...+...+... ..+....+++.+.|.+- ++..
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~-----~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF-----TKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC-----CEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC-----CeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 55666776542 22221 12577777888888888887764332211 12456788889998875 5544
Q ss_pred Hh
Q 036168 375 LG 376 (846)
Q Consensus 375 ~~ 376 (846)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.22 E-value=2.4e-05 Score=83.00 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHHhcC-------CCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQT-------NDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.+++|.+..++.|.+.+... .... ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSC-CCCCCEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH------
Confidence 56899999999998876321 0011 223568899999999999999999842 222 2222221
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh-----------hhHHHHHHhhC---CCCCCcE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP-----------KVWDELKSLLL---GSAKGSK 302 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~ 302 (846)
++ .... .......+...+...-..++.+|+||+++.... .....+...+. ....+..
T Consensus 119 ~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HH----hhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 1111 111222222222222245678999999964321 11223333332 1234555
Q ss_pred EEEeCCChHHH-HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHHh
Q 036168 303 ILVTTRSNKVA-SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTLG 376 (846)
Q Consensus 303 iiiTtR~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 376 (846)
||.||..+... ..... .....+.+...+.++..+++...+........ ......|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR-RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH-TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc-ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66677654211 11111 11246788899999999999887743322111 2445788888988 454555554
No 193
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=1.8e-06 Score=82.48 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=54.0
Q ss_pred HHHHHhhccCCceeEEEeCCC-Chh-----hhhhhhcccCccCeeeccCCCccc----ccchhhhcCCCCcEEecCCcCC
Q 036168 567 SILTSCISKSQFLRVIDLSDS-AIE-----VLSREIGNLKHLRYLDLSGHDKIK----KLPNSICELHSLQTVCLGGCRE 636 (846)
Q Consensus 567 ~~~~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~~ 636 (846)
..+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.... .+...+...++|++|+|++|..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 445566677777777777777 654 344556666777777777765332 2334445556677777766653
Q ss_pred Ccc----ccccccccCCCcEEEe--ccccc
Q 036168 637 LEE----LPKDIRYLVNLRMFVV--STKQK 660 (846)
Q Consensus 637 ~~~----~p~~~~~l~~L~~L~l--~~~~~ 660 (846)
... +...+...++|++|++ ++|.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 322 2334444455555555 44444
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.17 E-value=6.8e-06 Score=78.13 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG 248 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 248 (846)
.+..++.+.+++..-.. .....++|+|++|+||||||+.++........+. ++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcC
Confidence 44455555555543221 2346899999999999999999998533222332 3343 334444444443322
Q ss_pred CCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC--ChhhHHHHHHhhCCC-CCCcEEEEeCCCh
Q 036168 249 QNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE--DPKVWDELKSLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~l~~~l~~~-~~gs~iiiTtR~~ 310 (846)
.... .....+ . +.-+|||||++.. +...-+.+...+... ..|..+|+||...
T Consensus 89 ~~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 222222 2 4468999999743 332223344433321 2466788888744
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=3.9e-05 Score=83.12 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=73.2
Q ss_pred hhhcccccceEEEeccCCCcchhHHHHHhhccCCceeEEEeCCCChhhhh-hhhcccCccCeeeccCCCccccc------
Q 036168 544 SLLSDSRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSDSAIEVLS-REIGNLKHLRYLDLSGHDKIKKL------ 616 (846)
Q Consensus 544 ~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~l------ 616 (846)
..+.+|.+|+++.+... . ..+-..+|.+|.+|+.++|.++ +..++ ..|.++..|+.+.+..+ +..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~ 137 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFK 137 (394)
T ss_dssp TTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTT
T ss_pred HHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeee
Confidence 45778889999888632 2 2333467888999999998754 44443 34667777777666432 1111
Q ss_pred -----------------chhhhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccc
Q 036168 617 -----------------PNSICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMIS 679 (846)
Q Consensus 617 -----------------p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 679 (846)
...|.++++|+.+.+..+. ...-...|.++.+|+.+.+..+........+..+..|+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecC
Confidence 1235556666666665421 2222334556666666666554322223345555566655544
Q ss_pred c
Q 036168 680 D 680 (846)
Q Consensus 680 ~ 680 (846)
.
T Consensus 217 ~ 217 (394)
T 4fs7_A 217 N 217 (394)
T ss_dssp T
T ss_pred C
Confidence 3
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.14 E-value=3.5e-05 Score=83.14 Aligned_cols=190 Identities=15% Similarity=0.104 Sum_probs=100.6
Q ss_pred CCccccchHHHHHHHHHHhcCC------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTN------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
-.+++|.+..++.|.+++.... .+.....+.|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--
Confidence 3579999999999998873210 000012467899999999999999999763 2211 22333222111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------ChhhHHHHHHhhC---C-CCCCc
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DPKVWDELKSLLL---G-SAKGS 301 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-~~~gs 301 (846)
.. .......+...+...-...+.+|+||+++.. .......+...+. . .....
T Consensus 187 ~~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 187 KY-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred cc-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 0011111222222222345679999999542 1111122222222 1 12334
Q ss_pred EEEEeCCChHHH-HHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCch-HHHHHh
Q 036168 302 KILVTTRSNKVA-SIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPL-AVRTLG 376 (846)
Q Consensus 302 ~iiiTtR~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 376 (846)
.||.||...... ..... .....+.+...+.++..+++...+...+... ..+....|++.+.|..- ++..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566566543211 11111 1123588889999999999988774433221 22456788888888554 555544
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.12 E-value=3.2e-05 Score=84.67 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=102.7
Q ss_pred CCccccchHHHHHHHHHHhcC----C--CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQT----N--DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
-.+++|.+..++.|.+.+..+ . .+.....+.|.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH---
Confidence 366899999999998876311 0 0000234688999999999999999999742 111233333221
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-------h----hhHHHHHHhhCC---CCCCcE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-------P----KVWDELKSLLLG---SAKGSK 302 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~---~~~gs~ 302 (846)
+. ....+. .......+... .-..++.+|+||+++... . .....+...+.. ...+..
T Consensus 204 -l~----~~~~g~--~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGE--SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcch--HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 11122222222 223567899999996431 1 112223333332 234566
Q ss_pred EEEeCCChHHHH-HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHHh
Q 036168 303 ILVTTRSNKVAS-IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTLG 376 (846)
Q Consensus 303 iiiTtR~~~~~~-~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 376 (846)
||.||..+.... .... .....+.+...+.++..++|..++....... .......|++.+.| .+-.|..+.
T Consensus 274 vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 776776543211 1111 1123678888888888889988774322111 12445788888888 444555544
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=5.9e-05 Score=78.13 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=100.9
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.+++|.+..+++|.+++.... -+- ...+.+.|+|++|+|||+||+.+++.. ... ++.+. .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----h
Confidence 468999998888888764310 000 224678999999999999999999742 211 22222 2
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC--------------hhhHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--------------PKVWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 299 (846)
.++.. ...+.. ...+...+.......+.+|++|+++... ......+...+.. ...
T Consensus 83 ~~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 222221 1122233333334567899999985310 1122344444432 233
Q ss_pred CcEEEEeCCChHHHH-H-hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchH
Q 036168 300 GSKILVTTRSNKVAS-I-MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLA 371 (846)
Q Consensus 300 gs~iiiTtR~~~~~~-~-~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Pla 371 (846)
+..||.||....... . .....-...+.+...+.++-.+++.............+. ..++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 556777776654221 1 111111246889999999989998877643322211222 3556667776643
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.10 E-value=0.00015 Score=76.36 Aligned_cols=181 Identities=20% Similarity=0.215 Sum_probs=100.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|.+..++.+...+....... ..+..+.|+|++|+||||||+.++... ...| .. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~----~~-~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI----HV-TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE----EE-EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE----EE-EechHh---------
Confidence 457898888888777665320000 224678999999999999999998742 2111 11 111110
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC------------------CCcEEE-
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA------------------KGSKIL- 304 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii- 304 (846)
....++...+ ..+. ++-++++|++........+.+...+.... +...++
T Consensus 88 ----------~~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 88 ----------VKQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------CSHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------cCHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0111111111 1222 34577889887655444555544332211 011222
Q ss_pred EeCCChHHHHHhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCchHHHHHhh
Q 036168 305 VTTRSNKVASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTLGS 377 (846)
Q Consensus 305 iTtR~~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 377 (846)
.|++...+....... ......+++.+.++-.+++.+.+...+.. ...+.+..|++++.|.|..+..+..
T Consensus 156 at~~~~~Ls~~l~sR-~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 156 ATTRSGLLSSPLRSR-FGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp EESCGGGSCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred ecCCcccCCHHHHHh-cCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHHHH
Confidence 344433322222111 11257899999999999999877433222 2346688999999999976655443
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.05 E-value=3.5e-06 Score=76.55 Aligned_cols=110 Identities=9% Similarity=0.104 Sum_probs=64.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+....-.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~---- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP---- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh----
Confidence 3578999999888888754321 123477999999999999999987422 122222111111111
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-CCCcEEEEeCC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-AKGSKILVTTR 308 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiiTtR 308 (846)
..+.+. .+.-.|+||+++.........+...+... ..+.++|.||.
T Consensus 68 -----------------~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 68 -----------------MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp -----------------HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred -----------------hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 111111 12347899999887766666666655432 34567888775
No 201
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=4.2e-05 Score=82.83 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=23.2
Q ss_pred CCCCccceeecccccccccC-CcCCCCCCCcceeeccCC
Q 036168 777 GSTKTLKTLIIRNCPNFMAL-PESLRNLEALETLAIGGC 814 (846)
Q Consensus 777 ~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~l~~c 814 (846)
..|++|+.+.|..+ ++.+ ...|.+|++|+.+++..+
T Consensus 340 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 56677777777654 3333 335677778888777543
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=1.1e-05 Score=77.00 Aligned_cols=120 Identities=8% Similarity=0.061 Sum_probs=89.6
Q ss_pred hhhhhcccccceEEEeccC-CCc-chhHHHHHhhccCCceeEEEeCCCChh-----hhhhhhcccCccCeeeccCCCccc
Q 036168 542 FSSLLSDSRRARTILFPIN-DEK-TNQSILTSCISKSQFLRVIDLSDSAIE-----VLSREIGNLKHLRYLDLSGHDKIK 614 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~~~~ 614 (846)
+...+...+.|++|.+..+ ..+ .....+...+...+.|++|+|++|.+. .+...+...++|++|+|++|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4566788899999999866 544 223446667888999999999999986 345667777899999999987443
Q ss_pred ----ccchhhhcCCCCcEEec--CCcCCCcc----ccccccccCCCcEEEecccccc
Q 036168 615 ----KLPNSICELHSLQTVCL--GGCRELEE----LPKDIRYLVNLRMFVVSTKQKS 661 (846)
Q Consensus 615 ----~lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~ 661 (846)
.+...+...++|++|+| ++|..... +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25666778899999999 77764433 3445566688888888887664
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=0.00011 Score=79.40 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=37.8
Q ss_pred cccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC-cCCCCCCCcceeeccCCc
Q 036168 754 LHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP-ESLRNLEALETLAIGGCP 815 (846)
Q Consensus 754 l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~c~ 815 (846)
.+|+.+.|.. +++.+....+ ..|.+|+.+.|..+ ++.+. ..|.+|++|+.+++.++.
T Consensus 311 ~~L~~i~lp~--~v~~I~~~aF-~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 311 ISLKSIDIPE--GITQILDDAF-AGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTT-TTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCcCEEEeCC--cccEehHhHh-hCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 3677777653 3445544332 67888888888654 44554 457788899999888764
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.96 E-value=3.8e-05 Score=80.19 Aligned_cols=139 Identities=20% Similarity=0.342 Sum_probs=75.8
Q ss_pred CccccchHHHHHHHHHHhcCC---CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN---DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
..++|.+..++.+...+.... .........+.|+|++|+|||++|+.++... ...-...+.+.++..... ....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~-~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEK-HAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCST-THHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeeccccccc-ccHH
Confidence 347899998888888775431 0010123589999999999999999998742 111112445555433221 1122
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeCCC
Q 036168 241 KIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTTRS 309 (846)
Q Consensus 241 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtR~ 309 (846)
.++....+ .........+...+. ....-+++||+++.........+...+.... ....||.||..
T Consensus 94 ~l~g~~~~-~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 94 RLIGAPPG-YVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHCCCTT-STTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred HhcCCCCc-cccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 22211000 001011112222222 2334699999998877777777777664321 23347777765
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=0.00012 Score=73.84 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=95.8
Q ss_pred CCccccchHHHHHHHHHHhc---CCC---CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQ---TND---GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
-.+++|.+..++++.+.+.. ... -.....+-+.|+|++|+||||+|+.+++.. ... .+.++.+.-.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~--- 82 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFV--- 82 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSST---
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHH---
Confidence 35689999888777665421 100 000123458899999999999999998732 211 2333221110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC----------h----hhHHHHHHhhCC--CCCC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED----------P----KVWDELKSLLLG--SAKG 300 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~g 300 (846)
. .........+...+.......+.++++|+++... . .....+...+.. ...+
T Consensus 83 -----------~-~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 83 -----------E-MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------T-SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------H-HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0 0011122333333443334567899999983210 0 112223333322 2334
Q ss_pred cEEEEeCCChHHH-HHhCC-CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCC-CchHHHHH
Q 036168 301 SKILVTTRSNKVA-SIMGT-MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGG-IPLAVRTL 375 (846)
Q Consensus 301 s~iiiTtR~~~~~-~~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 375 (846)
..||.||...... ..... ......+.+...+.++-.+++.............. ...++..+.| .+--+..+
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 5666677655321 11111 11123677888888888888877653322111111 2456677777 66555443
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=4.1e-05 Score=78.92 Aligned_cols=149 Identities=9% Similarity=-0.016 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchh-hhccCCeeEEEEecC-cccHHHHHHHHHHH
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQS-VQEHFKLKIWICVSE-DFEQRQIMTKIIKS 245 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 245 (846)
|-++.++.|...+... . .....++|++|+||||+|+.+++... .........++..++ ....++ .++++..
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4456677777877652 2 56888999999999999999986311 111122234444332 222222 2333333
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH-HHHHhCCCCCCCc
Q 036168 246 ITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK-VASIMGTMRGTAG 324 (846)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-~~~~~~~~~~~~~ 324 (846)
....+ ..+++-++|+|+++.......+.|...+...++.+.+|++|.++. +...+.. + .
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R--~ 133 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R--V 133 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T--S
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e--e
Confidence 32111 124567899999988777778888888877777788887776542 3332222 1 7
Q ss_pred EecCCCChHHHHHHHHHhh
Q 036168 325 YKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 325 ~~l~~l~~~~a~~L~~~~a 343 (846)
+.+.++++++..+.+.+..
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999988776
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=8.7e-05 Score=78.24 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=98.7
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
+++.|.++.+++|.+.+.-+- -+- ..++-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc-
Confidence 568899998888877653210 011 33567889999999999999999983 33222 2333221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC--------h------hhHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--------P------KVWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~l~~~l~~--~~~ 299 (846)
.+.......+...+...-...+++|++|+++... . .....+...+.. ...
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0011111112222222224568999999986421 0 012233333333 233
Q ss_pred CcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 300 GSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 300 gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
+..||.||..++... ......-...+.++.-+.++-.++|..+........+-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 445666776554321 112222345788988888888999987764332222222 346777777643
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=8.1e-06 Score=75.66 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=16.6
Q ss_pred CcCEEEeecCCCCcc-ccccccCCCCcCeEecccCcccc
Q 036168 696 VLRTIFIADCPRLIS-LPPAVKYLSSLETLMLEDCESLT 733 (846)
Q Consensus 696 ~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~ 733 (846)
+|+.|+|++|..++. --..+..+++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 355555555543332 01123344555555555554443
No 209
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=1.1e-05 Score=74.90 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCCcEEecCCcCCCccccccccccCCCcEEEecccc-cccc-cccCCC----CCCCCEeccccccCcccc-hhhccCCCC
Q 036168 624 HSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQ-KSLL-ESGIGC----LSSLRFLMISDCENLEYL-FDDIDQLCV 696 (846)
Q Consensus 624 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~----l~~L~~L~l~~~~~~~~~-~~~l~~l~~ 696 (846)
.+|+.||+++|.....--..+..+++|++|+|++|. ++.- -..++. +++|++|+|++|..+++- ...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666665333323344556666666666654 3310 011222 235666666666544321 233455666
Q ss_pred cCEEEeecCCCCc
Q 036168 697 LRTIFIADCPRLI 709 (846)
Q Consensus 697 L~~L~l~~~~~~~ 709 (846)
|+.|+|++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 6666666665444
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=3.7e-05 Score=84.76 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=102.2
Q ss_pred CccccchHHHHHHHHHHhcCCC--------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTND--------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
..++|.+..+++|.+++..... +. ...+-|.|+|++|+|||++|+.+++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch-----
Confidence 4589999999999888753200 00 22456899999999999999999873 2211 2333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC--------C---hhhHHHHHHhhCC--CCCCcE
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE--------D---PKVWDELKSLLLG--SAKGSK 302 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~ 302 (846)
+ +...+ .......+...+.....+++.+|+||+++.. . ......|...+.. ...+..
T Consensus 273 -~----l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 -E----IMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -H----HHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -H----hhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 11111 0111122333344444567789999998321 1 1222334444432 233455
Q ss_pred EEEeCCChHH-HHHhCC-CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC-chHHHHH
Q 036168 303 ILVTTRSNKV-ASIMGT-MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI-PLAVRTL 375 (846)
Q Consensus 303 iiiTtR~~~~-~~~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 375 (846)
||.||..... ...... ......+.+...+.++-.+++..++..........+ .+++..+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 6666665532 222211 111236889999999999999988743322222222 4566677664 4444444
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.87 E-value=6.2e-05 Score=76.47 Aligned_cols=132 Identities=13% Similarity=0.150 Sum_probs=69.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++..... .. ..+.++++.- . .+.+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~-~~~~v~~~~~-~-~~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW-QG-PFISLNCAAL-N-ENLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTTT-TS-CEEEEEGGGS-C-HHHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCcc-CC-CeEEEecCCC-C-hhHHHH--
Confidence 4578999998888877654321 12467899999999999999998742211 11 2344554433 2 222221
Q ss_pred HHhcCCCCCCCCHH--HHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeCCC
Q 036168 244 KSITGQNPGDLDTD--QLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTTRS 309 (846)
Q Consensus 244 ~~l~~~~~~~~~~~--~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtR~ 309 (846)
.+.+...+..... .....+. ....-+|+||+++.........+...+... ..+.+||.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1212111000000 0000111 122358999999887766666666655421 234578888775
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00025 Score=76.09 Aligned_cols=181 Identities=20% Similarity=0.162 Sum_probs=98.0
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
+++.|.++.+++|.+.+.-+- -+- ..++-|.++|++|.|||+||+++++. ....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 568899988888877653210 011 33578899999999999999999984 32222 2333222110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------Ch---hhHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DP---KVWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~ 299 (846)
.+.......+...+...-...+++|++|+++.. +. .....+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 000111111222222222456899999998631 00 112234444433 233
Q ss_pred CcEEEEeCCChHHHHHhC--CCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 300 GSKILVTTRSNKVASIMG--TMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~~~--~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
+..||.||..++.....- ...-...+.++.-+.++-.++|..+........+-++ ..+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 556777877654332111 1111346778777888888888877644332222222 46677777743
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.83 E-value=7.9e-05 Score=82.08 Aligned_cols=99 Identities=11% Similarity=-0.053 Sum_probs=63.2
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeC---------CC----h-HHHHHhCCCCCCCcEecCCCChHHHHH
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTT---------RS----N-KVASIMGTMRGTAGYKLEGLPYESCLS 337 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt---------R~----~-~~~~~~~~~~~~~~~~l~~l~~~~a~~ 337 (846)
-++++|+++..+.+..+.|...+...... .+|+.| .+ + .+...... +...+.+.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHh--hcceeeCCCCCHHHHHH
Confidence 39999999988888888888888765544 344343 11 1 11111111 12257999999999999
Q ss_pred HHHHhhccCCCCCCcchHHHHHHHHHhh-CCCchHHHHHh
Q 036168 338 LFMKCAFKEGQHKHPNLVKIGEEIVKKC-GGIPLAVRTLG 376 (846)
Q Consensus 338 L~~~~a~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~~ 376 (846)
++...+...+... ..+....|+..+ +|.|..+..+.
T Consensus 374 iL~~~~~~~~~~~---~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 374 IIKIRAQTEGINI---SEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHTCCB---CHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHhCCCC---CHHHHHHHHHHccCCCHHHHHHHH
Confidence 9988764322221 225567888888 88887655543
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.83 E-value=5.9e-05 Score=90.02 Aligned_cols=158 Identities=16% Similarity=0.242 Sum_probs=82.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---cC-C-eeEEEEecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---HF-K-LKIWICVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~ 238 (846)
..++||+++++++...+... ....+.|+|++|+||||+|+.+++...... .. . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 56899999999999998653 234578999999999999999987421110 00 1 233333211100
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhc-CceEEEEeeccCCCC--------hhhHHHHHHhhCCCCCCcEEEEeCC
Q 036168 239 MTKIIKSITGQNPGDLDTDQ-LRRILRDRLN-GEIYLLVMDDVWNED--------PKVWDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiiTtR 308 (846)
+..... .... +...+...-. +++.+|++|+++... .+....+...+... +..+|.+|.
T Consensus 240 ---------g~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------cCccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 000000 1122 2222222222 367899999996532 11122344444332 344666665
Q ss_pred ChHHHHH---hCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 309 SNKVASI---MGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 309 ~~~~~~~---~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
....... .....+...+.+.+.+.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 4433211 0111123468999999999999887543
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.83 E-value=0.00011 Score=75.95 Aligned_cols=163 Identities=13% Similarity=0.176 Sum_probs=86.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
+.++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.... ... ..+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~-~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSAR-SDR-PLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSC-SSS-CCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcc-cCC-CeEEEeCCCCC--hHHHHH--
Confidence 4589999999998888765432 2345779999999999999999873211 111 12344444322 222221
Q ss_pred HHhcCCCCCCCCHH--HHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeCCCh
Q 036168 244 KSITGQNPGDLDTD--QLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTTRSN 310 (846)
Q Consensus 244 ~~l~~~~~~~~~~~--~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtR~~ 310 (846)
.+.+...+..... .....+... ..-+|+||++..........+...+... ....+||.||...
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred -HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 2222211111000 000111111 1247999999887766666676666432 1346788777653
Q ss_pred HHHHHh--CCCC-------CCCcEecCCCC--hHHHHHHHHH
Q 036168 311 KVASIM--GTMR-------GTAGYKLEGLP--YESCLSLFMK 341 (846)
Q Consensus 311 ~~~~~~--~~~~-------~~~~~~l~~l~--~~~a~~L~~~ 341 (846)
. .... +... ....+.++++. .+|...|+..
T Consensus 148 l-~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 L-AEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp H-HHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHH
T ss_pred H-HHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHH
Confidence 1 1111 0000 01247788988 4555555443
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.83 E-value=0.0001 Score=81.36 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=79.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccC------Ce-eEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHF------KL-KIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~-~~wv~~~~~~~~~ 236 (846)
+.++||+.+++++...+.... ..-+.|+|++|+|||++|+.++.. ....+ .. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 459999999999999996532 235679999999999999999874 21111 11 2222222
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHh
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIM 316 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~ 316 (846)
....+. .......+ +...-..++.+|++|. ..+....+...+.. ...++|.+|.........
T Consensus 246 -------~~~~g~--~e~~~~~~---~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLKKV---MDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHHHH---HHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 000000 01122222 2222235678999992 11122223333322 234666666554321111
Q ss_pred CC----CCCCCcEecCCCChHHHHHHHHHhh
Q 036168 317 GT----MRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 317 ~~----~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.. ..+...+.+...+.++..+++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 10 0012368999999999999998765
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.83 E-value=0.00012 Score=76.22 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCccccchHHHHHHHHHHhcC--CCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 163 PSEIIGRDEDREKIIELLMQT--NDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
...++|.+..++.+...+... ..+ .......+.|+|++|+|||++|+.+++.. .. ..+.++++...+
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~---~~~~i~~~~~~~ 88 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NA---PFIKVEATKFTE 88 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGSS
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEcchhccc
Confidence 356899999999998877541 000 00124567899999999999999998742 21 133444432211
Q ss_pred -------HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhh------------HHHHHHhhC
Q 036168 235 -------QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKV------------WDELKSLLL 295 (846)
Q Consensus 235 -------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------------~~~l~~~l~ 295 (846)
....+.++.....+ .+.. .+++.+|+||+++...... ...+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CCccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhc
Confidence 11222222221100 0000 1235799999996543222 344555554
Q ss_pred CC----------CCCcEEEEeC----CCh-----HHHHHhCCCCCCCcEecCCCChHHHHHHHHH
Q 036168 296 GS----------AKGSKILVTT----RSN-----KVASIMGTMRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 296 ~~----------~~gs~iiiTt----R~~-----~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
.. ..+..+|.|+ ..+ .+...+ ...+.+.+++.++..+++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~-----~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 154 GSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL-----PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC-----CEEEECCCCCHHHHHHHHHS
T ss_pred CCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC-----CceEEcCCcCHHHHHHHHHh
Confidence 32 1244566653 221 122111 13689999999999988885
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=2e-05 Score=76.46 Aligned_cols=120 Identities=14% Similarity=0.215 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC
Q 036168 171 EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN 250 (846)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 250 (846)
..++.+..++...... ...+.+.|+|++|+||||||+.+++.. ......++|+++ ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYV------PELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEH------HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEh------HHHHHHHHHHhcc--
Confidence 3445556666543211 122688999999999999999999843 222334556644 2344444332211
Q ss_pred CCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHH--HHH-HhhCCC-CCCcEEEEeCCCh
Q 036168 251 PGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWD--ELK-SLLLGS-AKGSKILVTTRSN 310 (846)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~-~~l~~~-~~gs~iiiTtR~~ 310 (846)
.........+.+ .-+|||||++......|. .+. ..+... ..+.++|+||...
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 112333333321 239999999653322211 111 122111 2345688887743
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00024 Score=75.89 Aligned_cols=180 Identities=18% Similarity=0.155 Sum_probs=96.6
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++.|.++.+++|.+.+.-+- -+- ..++-|.++|++|.|||+||+++++. ....| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh--
Confidence 468999998888877643200 011 34678899999999999999999983 33222 233322111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC--------h------hhHHHHHHhhCCC--CC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--------P------KVWDELKSLLLGS--AK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~------~~~~~l~~~l~~~--~~ 299 (846)
. .........+...+...-...+++|++|+++... . .....+...+... ..
T Consensus 281 ------------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 ------------Q-KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------C-CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------c-ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 0011111112222222224568999999986321 0 0112223333322 23
Q ss_pred CcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 300 GSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 300 gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
+..||.||..++... ......-...+.+..-+.++-.++|..+........+-++ ..|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 445566776543221 1122222457888888888888999877743322222222 4677777774
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=2e-05 Score=79.05 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=17.0
Q ss_pred ccCCceeEEEeCCCChhhh---hhhhcccCccCeeeccCC
Q 036168 574 SKSQFLRVIDLSDSAIEVL---SREIGNLKHLRYLDLSGH 610 (846)
Q Consensus 574 ~~~~~L~~L~L~~~~~~~l---~~~~~~l~~L~~L~L~~~ 610 (846)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 3445555555555544422 233344455555555544
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00038 Score=75.90 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=97.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTND-------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.+++|.++.++++.+.+..-.. +. ..++-|.|+|++|+|||+||+.++.. .... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-
Confidence 4689999887777665432100 00 12345889999999999999999873 2211 223332221110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCCh--------------hhHHHHHHhhCC--CCCC
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDP--------------KVWDELKSLLLG--SAKG 300 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 300 (846)
............+.......+.+|+||+++.... .....+...+.. ...+
T Consensus 89 --------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0000112223334444456789999999954211 112233333321 2235
Q ss_pred cEEEEeCCChHHHHH--hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 301 SKILVTTRSNKVASI--MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 301 s~iiiTtR~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
..||.||..++.... .....-...+.+...+.++-.+++..++.........+ ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 567777776643321 11111223678888888888888887764332211112 245788888877
No 222
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00037 Score=73.71 Aligned_cols=180 Identities=20% Similarity=0.138 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
+++.|.++.+++|.+.+.-+- -+- ..++-|.++|++|.|||.||+++++. ....| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh--
Confidence 568899988888877653210 011 33577999999999999999999984 33222 222221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC-----------Ch---hhHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE-----------DP---KVWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~ 299 (846)
. .+.......+...+...-...+++|++|+++.. +. .....+...+.. ...
T Consensus 254 ------------s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 ------------Q-KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ------------C-SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------h-ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0 000111111112222222456799999998531 00 112223333322 233
Q ss_pred CcEEEEeCCChHHHHHhCC--CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 300 GSKILVTTRSNKVASIMGT--MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 300 gs~iiiTtR~~~~~~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
+..||.||..++.....-. ..-+..+.+..-+.++-.++|..+........+-++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 4456677766554322111 111235777777888888888877643322222223 4566777664
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00022 Score=76.43 Aligned_cols=179 Identities=17% Similarity=0.121 Sum_probs=95.6
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++.|.++.+++|.+.+.-+- -+- ..++-|.++|++|.|||.||+++++. ....| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh--
Confidence 568999999888877643210 011 34678899999999999999999983 32222 223322111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEeeccCCC-----C------h---hhHHHHHHhhCCC--C
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRD-RLNGEIYLLVMDDVWNE-----D------P---KVWDELKSLLLGS--A 298 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-----~------~---~~~~~l~~~l~~~--~ 298 (846)
. .+.... +...+.+.. .-...+++|++|+++.. + . .....+...+... .
T Consensus 253 ------------~-~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------Q-MYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------S-SCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------h-cccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 0 000011 111122221 12345799999998421 0 0 0122344444432 2
Q ss_pred CCcEEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 299 KGSKILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 299 ~gs~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
.+..||.||..++..... ....-...+.++.-+.++-.++|..+........+-++ ..|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 344566677765433211 11112346788888888888888876643322222222 4667777764
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.66 E-value=0.00022 Score=84.29 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=86.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEE-EecCcccHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWI-CVSEDFEQRQI 238 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~~~~~~~~~~ 238 (846)
..++||+.+++++.+.|... ....+.|+|++|+||||+|+.+++...... .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 56899999999999998653 234578999999999999999987421110 11223322 11100
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCC--------Chhh-HHHHHHhhCCCCCCcEEEEeCC
Q 036168 239 MTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNE--------DPKV-WDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 239 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~iiiTtR 308 (846)
+.+... ....+.....+.+.+ ..++.+|++|+++.. .... ...+...+. ..+..+|.+|.
T Consensus 254 -------~~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 001111 112222222233333 345789999999754 1111 112222222 23456667666
Q ss_pred ChHHHHHhCC----CCCCCcEecCCCChHHHHHHHHHhh
Q 036168 309 SNKVASIMGT----MRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 309 ~~~~~~~~~~----~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.......... ..+...+.+...+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5443222111 1112258889999999888887654
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.66 E-value=1.7e-05 Score=80.94 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=81.5
Q ss_pred CCccccchHHHHHHHHHHhcCCC-------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 163 PSEIIGRDEDREKIIELLMQTND-------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
-.+++|.+..++++.+.+..-.. +. ...+-+.|+|++|+|||++|+.+++. ....|- .+..+.-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~-- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI-- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH--
Confidence 35689999888887776541000 00 11234789999999999999999874 222221 11111100
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChh---------------hHHHHHHhhCCC---
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPK---------------VWDELKSLLLGS--- 297 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---------------~~~~l~~~l~~~--- 297 (846)
....+.. ......+ +......++.+|++|+++..... ....+...+...
T Consensus 82 --------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 82 --------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp --------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred --------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 0010111 0111111 12222345679999999543211 111122222211
Q ss_pred CCCcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhhc
Q 036168 298 AKGSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCAF 344 (846)
Q Consensus 298 ~~gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~ 344 (846)
.....||.||....... ..........+.+...+.++..+++...+.
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 12245677776553211 111111124678888888988888887663
No 226
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.0006 Score=73.67 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCCCCCCCEeccccccCcccchhhccCCCCcCEEEeecCCCCccccc-cccCCCCcCeEecccCcccchhhhhhcccccc
Q 036168 667 IGCLSSLRFLMISDCENLEYLFDDIDQLCVLRTIFIADCPRLISLPP-AVKYLSSLETLMLEDCESLTLNLKIEMEGEES 745 (846)
Q Consensus 667 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 745 (846)
|..+.+|+.+.+... ....-...+.++++|+.+.+.. .+..++. .|.+|++|+.+.|..+ ++. +...
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~-----I~~~-- 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQ-----ILDD-- 328 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCE-----ECTT--
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccE-----ehHh--
Confidence 444555555555432 1111223455667777777643 3444543 4677788888887643 110 0011
Q ss_pred cccCCCCCcccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCCcCCCCCCCcceeeccCC
Q 036168 746 HCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALPESLRNLEALETLAIGGC 814 (846)
Q Consensus 746 ~~~~~l~~l~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~c 814 (846)
....+-+|+.+.|.. .++.++...+ ..|++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 329 ---aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 329 ---AFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ---TTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred ---HhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 111234788888853 4566665443 789999999999874322 34667788888877543
No 227
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=1.6e-05 Score=79.79 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=28.0
Q ss_pred cCCCCcEEecCCcCCCc--cccccccccCCCcEEEecccccccccccCCCCC--CCCEeccccccC
Q 036168 622 ELHSLQTVCLGGCRELE--ELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLS--SLRFLMISDCEN 683 (846)
Q Consensus 622 ~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~ 683 (846)
++++|++|+|++|.... .+|..+..+++|+.|+|++|.+..+. .+..+. +|++|+|++|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 34555555555544322 23334445555555555555554331 122222 555555555543
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.62 E-value=8.2e-05 Score=87.77 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=91.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCCC---CcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDGE---SETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~~---~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.+..++.+...+.....+. ......+.++|++|+|||++|+.+++.. ...-...+.++++.-.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~---- 563 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK---- 563 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS----
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc----
Confidence 3568999999998888876433111 0122378999999999999999998742 121223445554432210
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeCC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTTR 308 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtR 308 (846)
.. .....+...++. ...-+|+||++..........|...+..+ ....+||+||.
T Consensus 564 ----------~~--~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ----------HS--TSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------CC--CC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------cc--cccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 001111222221 23359999999888777777777766531 23567888887
Q ss_pred Ch-----HH----HHHhCC---CCCCCcEecCCCChHHHHHHHHHhh
Q 036168 309 SN-----KV----ASIMGT---MRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 309 ~~-----~~----~~~~~~---~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.. .+ ...... ..-...+.+.+++.++..+++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 31 11 111100 1111368888888888777776554
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00048 Score=73.76 Aligned_cols=180 Identities=19% Similarity=0.213 Sum_probs=91.9
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTN--------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++.|.++.+++|.+.+.-.- -+- ..++-|.++|++|.|||+||+++++. ....| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 578999998888877653210 011 33567899999999999999999984 32222 2333222110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCC----------C-Ch---hhHHHHHHhhCC--CCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWN----------E-DP---KVWDELKSLLLG--SAK 299 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~-~~---~~~~~l~~~l~~--~~~ 299 (846)
.........+...+...-...++++++|+++. . +. .....+...+.. ...
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 00011111122222222245679999999842 0 10 112233333332 234
Q ss_pred CcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChH-HHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCC
Q 036168 300 GSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYE-SCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGI 368 (846)
Q Consensus 300 gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~-~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (846)
+..||.||..++... ......-...+.+.+++.. +-.++|..+........+-++ ..+++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 556677776543221 1111111235777666544 445666666533222222223 4666777664
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.57 E-value=0.00038 Score=82.06 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhc---c-CCeeEEEEecCcccHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQE---H-FKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~ 239 (846)
..++||+.+++++...+... ...-+.|+|++|+|||++|+.+++...... . ....+ +.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------
Confidence 46999999999999999753 233578999999999999999987421000 0 01111 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHHhCCC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASIMGTM 319 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~~~~~ 319 (846)
.....+. .... +...+......++.+|++|.- .+....+...+. ....++|.||............
T Consensus 245 ---g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000000 0112 222333333467789999921 111122333332 2245677666654421111100
Q ss_pred ----CCCCcEecCCCChHHHHHHHHHhh
Q 036168 320 ----RGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 320 ----~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+...+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 012368999999999999998665
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=6.4e-05 Score=68.46 Aligned_cols=86 Identities=19% Similarity=0.060 Sum_probs=50.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
..++|+|+.|+|||||++.++...... .+ .++++....-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 488999999999999999998753321 22 2556654332111 1 12245
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCC-CCCc-EEEEeCCC
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGS-AKGS-KILVTTRS 309 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iiiTtR~ 309 (846)
-+|||||+...+...-+.+...+... ..|. .||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68999999765443334444443321 1233 48888874
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.44 E-value=0.00043 Score=72.83 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=87.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
..++|+++.++.+...+... ..+.++|++|+|||+||+.+++. .... ...+.+.......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 35789999999888888652 35789999999999999999873 2222 22334333333332211100
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcC--ceEEEEeeccCCCChhhHHHHHHhhCCC-----------CCCcEEEEeCCCh
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNG--EIYLLVMDDVWNEDPKVWDELKSLLLGS-----------AKGSKILVTTRSN 310 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtR~~ 310 (846)
.....+.. ..-.+ ...++++|+++.........+...+... .....||.|+...
T Consensus 94 ---~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 ---YNQHKGNF----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp ---EETTTTEE----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ---ecCCCCce----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000 00001 1258999999887766666666554321 2345555565522
Q ss_pred H------HHHHhCCCCCCCcEecCCCChHHHHHHHHHhhcc
Q 036168 311 K------VASIMGTMRGTAGYKLEGLPYESCLSLFMKCAFK 345 (846)
Q Consensus 311 ~------~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~ 345 (846)
. +....... -...+.+...+.++-.+++...+..
T Consensus 161 ~~~~~~~l~~~l~~R-f~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDR-FMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTT-SSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhh-eeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 11111110 0124889999999999999887643
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.36 E-value=0.0011 Score=76.72 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHhc----CC---CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQ----TN---DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.++.|.++.+++|.+.+.- +. .-.-..++-|.++|++|.|||+||+++++. ...+ .+.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhH------
Confidence 4578888888888776532 11 001134678999999999999999999984 3222 2333321
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-------h----hhHHHHHHhhCCC--CCCcEE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-------P----KVWDELKSLLLGS--AKGSKI 303 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~~~~l~~~l~~~--~~gs~i 303 (846)
+ +.. . ........+...+....+..+.+|++|+++..- . ....++...+... ..+..|
T Consensus 273 ~----l~s----k-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 E----IMS----K-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H----HHS----S-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred H----hhc----c-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 111 0 111122223333333445678999999985421 0 1112233222221 223445
Q ss_pred EEeCCChHHH-HHhCC-CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 304 LVTTRSNKVA-SIMGT-MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 304 iiTtR~~~~~-~~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
|.||...+.. ..... ..-.+.+.+..-+.++-.++|..+........+-+ ...|++.+.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 5566654322 11111 11234688888888888888887763322222222 346777777764
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.36 E-value=0.00071 Score=80.74 Aligned_cols=136 Identities=21% Similarity=0.375 Sum_probs=75.2
Q ss_pred CccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 240 (846)
..++|.+..++.+...+.....+ .......+.|+|++|+|||++|+.+++...- .. ...+.++++..... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~-~~-~~~i~i~~~~~~~~-~~~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-TE-EAMIRIDMTEYMEK-HAV- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS-SG-GGEEEECTTTCCSS-GGG-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-CC-CcEEEEechhccch-hHH-
Confidence 35799999999888877543211 0022358899999999999999999874211 01 12344444332211 000
Q ss_pred HHHHHhcCCCCC---CCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEe
Q 036168 241 KIIKSITGQNPG---DLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVT 306 (846)
Q Consensus 241 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 306 (846)
..+.+..++ ......+...++. ...-+|+||++..........|...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 111111100 0001122222222 234699999998888878888888876431 24447777
Q ss_pred CCC
Q 036168 307 TRS 309 (846)
Q Consensus 307 tR~ 309 (846)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 775
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.33 E-value=0.0095 Score=63.73 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=28.5
Q ss_pred ccceEEccCCCCCCCCchhhhcCCCCccceeecccccccccCC-cCCCCCCCcceeecc
Q 036168 755 HLRKLFVEGLPPLLELPQWLLQGSTKTLKTLIIRNCPNFMALP-ESLRNLEALETLAIG 812 (846)
Q Consensus 755 ~L~~l~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~ 812 (846)
+|+.+.+.. ..++.++...+ ..|++|+.+.|..+ ++.++ ..|.+|++|+.+.+.
T Consensus 287 ~L~~i~l~~-~~i~~I~~~aF-~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDN-SAIETLEPRVF-MDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECC-TTCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccc-cccceehhhhh-cCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 555555543 12334433322 56667777777543 33333 345667777777664
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.00049 Score=81.29 Aligned_cols=136 Identities=21% Similarity=0.337 Sum_probs=75.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIM 239 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 239 (846)
...++|.++.++.+...+.....+ .......+.++|++|+|||++|+.+++.. . ...+.++++...+..
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~--- 528 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH--- 528 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSS---
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchh---
Confidence 345889999998888876532211 00223478999999999999999998742 1 223444444322110
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCChhhHHHHHHhhCCCC-----------CCcEEEEeC
Q 036168 240 TKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNEDPKVWDELKSLLLGSA-----------KGSKILVTT 307 (846)
Q Consensus 240 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iiiTt 307 (846)
....+.+..++-...+ ....+.+.+ +....+|+||++.....+....|...+..+. ....||.||
T Consensus 529 --~~~~l~g~~~g~~g~~-~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 529 --TVSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp --CCSSSCCCCSCSHHHH-HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred --hHhhhcCCCCCCcCcc-ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0011111111111000 011122222 2345799999998877777777777765321 234577777
Q ss_pred CC
Q 036168 308 RS 309 (846)
Q Consensus 308 R~ 309 (846)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.15 E-value=0.0037 Score=68.61 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=93.3
Q ss_pred cCCccccchHHHHHHHHHHhcCCCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 162 LPSEIIGRDEDREKIIELLMQTNDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.-.+++|.++.+.++.+....-... .-.-.+-+.|+|++|+||||||+.++... . ...+.++.+.-.+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH-
Confidence 3467899998777766654321000 00112348999999999999999998742 2 1223333221100
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc----CceEEEEeeccCCCC----------hhhH----HHHHHhhCCC
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN----GEIYLLVMDDVWNED----------PKVW----DELKSLLLGS 297 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~~----~~l~~~l~~~ 297 (846)
.........+...++ ..+.++++|+++... ...+ ..+...+...
T Consensus 103 ------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 000111222333332 235799999995321 1112 2333333322
Q ss_pred --CCCcEEEEeCCChHHHHH-h-CCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 298 --AKGSKILVTTRSNKVASI-M-GTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 298 --~~gs~iiiTtR~~~~~~~-~-~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
..+..|+.||..++.... . ........+.+...+.++-.+++..++.......+.+ ...|+..+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 234456666766654221 1 1111234688888888888888887653221111111 345777777765
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=0.0011 Score=78.01 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHhcCC-------CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN-------DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
.+++|.+..+++|.+++...- .-.-.....|.|+|++|+||||||+.++.. ....| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 568999999998888775310 000023457899999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC-----------hhhHHHHHHhhCCC--CCCcEE
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED-----------PKVWDELKSLLLGS--AKGSKI 303 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~i 303 (846)
+.... .......+...+.......+.++++|++.... ......+...+... ..+..+
T Consensus 274 ---------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 10100 00011122222333334457899999984321 11122333333322 234456
Q ss_pred EEeCCChHHHH-HhCC-CCCCCcEecCCCChHHHHHHHHHhhc
Q 036168 304 LVTTRSNKVAS-IMGT-MRGTAGYKLEGLPYESCLSLFMKCAF 344 (846)
Q Consensus 304 iiTtR~~~~~~-~~~~-~~~~~~~~l~~l~~~~a~~L~~~~a~ 344 (846)
|.||..+.... .... ......+.+...+.++-.+++...+.
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 66666543221 1111 01123467788888888888887663
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.12 E-value=0.0022 Score=64.30 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=86.9
Q ss_pred CccccchHHHHHHHHHHhcCCCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQ 237 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 237 (846)
.+++|.++...++.+....-... .-.-.+-+.|+|++|+||||||+.++... . ...+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH------H
Confidence 56889887766665543211000 00011238999999999999999998742 2 122333211 1
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC----------Chhh----HHHHHHhhCCCC--CCc
Q 036168 238 IMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE----------DPKV----WDELKSLLLGSA--KGS 301 (846)
Q Consensus 238 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs 301 (846)
+.... .......+...+...-...+.++++|+++.. .... ...+...+.... ...
T Consensus 85 ----~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 ----FVEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp ----HHHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred ----HHHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11100 0000111112222222235689999998421 0111 122333333322 223
Q ss_pred EEEEeCCChHHHHHhCC--CCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 302 KILVTTRSNKVASIMGT--MRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 302 ~iiiTtR~~~~~~~~~~--~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
.++.||..+......-. ......+.+...+.++-.+++...+.........+ ...+++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 34456666554321111 11234678888888888888876653221111111 235667776654
No 240
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.08 E-value=0.0097 Score=62.66 Aligned_cols=158 Identities=9% Similarity=-0.026 Sum_probs=103.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRD-RLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 269 (846)
.++..++|+.|.||++.|+.+.+... ...|+....+.+.... +..++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 46889999999999999999887422 2234322222222222 23333333221 1245
Q ss_pred ceEEEEeeccCC-CChhhHHHHHHhhCCCCCCcEEEEeCCC-------hHHHHHhCCCCCCCcEecCCCChHHHHHHHHH
Q 036168 270 EIYLLVMDDVWN-EDPKVWDELKSLLLGSAKGSKILVTTRS-------NKVASIMGTMRGTAGYKLEGLPYESCLSLFMK 341 (846)
Q Consensus 270 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iiiTtR~-------~~~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~ 341 (846)
++-++|+|+++. .....++.+...+...++++.+|++|.. ..+...+.. +...+...+++.++....+..
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEEECCCCTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEEeeCCCHHHHHHHHHH
Confidence 567889999977 5667788888888876778877776643 234444332 234789999999999988888
Q ss_pred hhccCCCCCCcchHHHHHHHHHhhCCCchHHHHH
Q 036168 342 CAFKEGQHKHPNLVKIGEEIVKKCGGIPLAVRTL 375 (846)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 375 (846)
.+...+...+ .+.+..+++.++|.+..+...
T Consensus 154 ~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 7755443322 367789999999998877654
No 241
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.00098 Score=68.44 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44678899999999999999999984
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.04 E-value=0.0077 Score=64.36 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=35.1
Q ss_pred CccccchHHHHHHHHHHh----cCCC--------------------CCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLM----QTND--------------------GESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~----~~~~--------------------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++|.++.++.|...+. .... +.......+.|+|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 457888888888877662 0000 00012346889999999999999999873
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00044 Score=71.51 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV 229 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 229 (846)
+...++.+.+++..... .....+.|+|++|+|||+||..+++.......+ .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 33444555566654321 124678899999999999999999853212223 3445543
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.00 E-value=0.0053 Score=67.48 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|+++.++.+...+... ..|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888877542 36889999999999999999984
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.00 E-value=0.0026 Score=62.21 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=50.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh-----------cCCCC-CCCCHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI-----------TGQNP-GDLDTDQ 258 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----------~~~~~-~~~~~~~ 258 (846)
-.++.|+|.+|+||||||..++. ..-..++|++.....+...+.. +.... ..... .......
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999986 1224577887766455544432 22221 11111 1112223
Q ss_pred HHHHHHHHhcCceEEEEeeccCC
Q 036168 259 LRRILRDRLNGEIYLLVMDDVWN 281 (846)
Q Consensus 259 ~~~~l~~~l~~kr~LlVlDdv~~ 281 (846)
....++..+..+.-++|+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44445555544577999998743
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.0033 Score=63.99 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCC------CCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHH
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG------ESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQR 236 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 236 (846)
-.+++|.++..+++.+....-... .-.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~------ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------ 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH------
Confidence 457899887777666544221000 00011238999999999999999998742 2 122333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCC----------ChhhH----HHHHHhhCCCCC--C
Q 036168 237 QIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNE----------DPKVW----DELKSLLLGSAK--G 300 (846)
Q Consensus 237 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~~--g 300 (846)
.+ ..... ......+...+...-...+.++++|+++.. ....+ ..+...+..... .
T Consensus 108 ~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11000 000111112222222245689999998421 01111 223333333222 2
Q ss_pred cEEEEeCCChHHHH-H-hCCCCCCCcEecCCCChHHHHHHHHHhhccCCCCCCcchHHHHHHHHHhhCCCc
Q 036168 301 SKILVTTRSNKVAS-I-MGTMRGTAGYKLEGLPYESCLSLFMKCAFKEGQHKHPNLVKIGEEIVKKCGGIP 369 (846)
Q Consensus 301 s~iiiTtR~~~~~~-~-~~~~~~~~~~~l~~l~~~~a~~L~~~~a~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (846)
..++.||..+.... . .........+.+...+.++-.+++...+.......... ...++..+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 33444555544321 1 11111234788888888888888887653221111111 235677777755
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.011 Score=59.81 Aligned_cols=158 Identities=19% Similarity=0.144 Sum_probs=79.9
Q ss_pred CccccchHHHHHHHHHHhcCCC--------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccH
Q 036168 164 SEIIGRDEDREKIIELLMQTND--------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQ 235 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 235 (846)
.++.|.++.+++|.+.+...-. +- .-.+-++|+|++|.||||||+.++..... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l-~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4578888888877765421100 00 01122899999999999999999873211 2333332111100
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEeeccCCCC-----------hhhHHHHHHhhCCC--CCCc
Q 036168 236 RQIMTKIIKSITGQNPGDLDTDQLRRILRDRL-NGEIYLLVMDDVWNED-----------PKVWDELKSLLLGS--AKGS 301 (846)
Q Consensus 236 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs 301 (846)
. ..........+.+.. ...+.++++|++.... ......+...+..+ ....
T Consensus 84 ---------------~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ---------------Y-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ---------------T-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ---------------h-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 000011111222221 3456899999985421 01122333334332 2234
Q ss_pred EEEEeCCChHHHHHh--CCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 302 KILVTTRSNKVASIM--GTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 302 ~iiiTtR~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
-++.+|..+++.... ....-...+.++.-+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 455666666543221 111223467888888888888888765
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.00083 Score=65.22 Aligned_cols=112 Identities=13% Similarity=-0.016 Sum_probs=64.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN--PGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~ 268 (846)
-.++.|+|..|+||||++..+.+.. ..+-..++.+..... .+ ...++++.++... .......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 4689999999999999998887743 222223444432222 11 1123333332110 011233455566665554
Q ss_pred Cce-EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 269 GEI-YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 269 ~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
+.+ -+||+|.+...+.+..+.+..... .|..||+|.+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 444 499999997665555555544333 267899999865
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.91 E-value=0.00048 Score=69.98 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe--cCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV--SEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 268 (846)
.+++.|+|++|+||||||.+++.. ... .++|++. .+..+. ...+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~-~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGG-KDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHT-TSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCC-CEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 457789999999999999999874 112 3456666 222110 01345666666666665
Q ss_pred CceEEEEeeccCC
Q 036168 269 GEIYLLVMDDVWN 281 (846)
Q Consensus 269 ~kr~LlVlDdv~~ 281 (846)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 555 999999853
No 250
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.91 E-value=0.005 Score=65.11 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=33.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++|.+..++.+....... ....+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 45899988666655444321 1234889999999999999999874
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.002 Score=72.16 Aligned_cols=161 Identities=15% Similarity=0.174 Sum_probs=77.6
Q ss_pred CccccchHHHHHHHHHHhcCC-CCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHH
Q 036168 164 SEIIGRDEDREKIIELLMQTN-DGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 242 (846)
.+++|.+...+.+.+.+.-.. ... ....++.|+|++|+||||||+.++... ...| ..+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~-~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKS-LKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSS-CCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhccc-CCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHH
Confidence 457888887777765443110 000 234589999999999999999998742 2222 223332222211111110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChh----hHHHHHHhhCCCC---------------CCcEE
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPK----VWDELKSLLLGSA---------------KGSKI 303 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~i 303 (846)
.... + .........+.. .....-+++||+++..... ....+...+.... ....|
T Consensus 155 ~~~i-g-----~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYV-G-----AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHh-c-----cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 0000 0 011111222222 2223348899999765432 1233334442211 23466
Q ss_pred EEeCCChH-----HHHHhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 304 LVTTRSNK-----VASIMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 304 iiTtR~~~-----~~~~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
|.||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~------~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM------EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE------EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc------ceeeeCCCCHHHHHHHHHHHH
Confidence 66766532 22222 257888888888888777654
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.56 E-value=0.0072 Score=56.70 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=62.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC---cccHHHHHHHHHHHh--cCCCC--CCCC-------HH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE---DFEQRQIMTKIIKSI--TGQNP--GDLD-------TD 257 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l--~~~~~--~~~~-------~~ 257 (846)
..|.|++..|.||||+|-.+.-. ..++=-.+.++.... ......++..+.-.+ .+..+ ...+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45666777779999999777652 223322344453332 223334443331000 01111 1111 12
Q ss_pred HHHHHHHHHhcCceE-EEEeeccCC---CChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 258 QLRRILRDRLNGEIY-LLVMDDVWN---EDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 258 ~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
......++.+.+.+| |||||++-. ...-..+++...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233445556655555 999999821 12233456677776666777899999985
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.37 E-value=0.021 Score=53.40 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=38.5
Q ss_pred hcCceEEEEeeccC---CCChhhHHHHHHhhCCCCCCcEEEEeC---CChHHHHHhCCCCCCCcEecCCCChHHH
Q 036168 267 LNGEIYLLVMDDVW---NEDPKVWDELKSLLLGSAKGSKILVTT---RSNKVASIMGTMRGTAGYKLEGLPYESC 335 (846)
Q Consensus 267 l~~kr~LlVlDdv~---~~~~~~~~~l~~~l~~~~~gs~iiiTt---R~~~~~~~~~~~~~~~~~~l~~l~~~~a 335 (846)
+..++-+++||.+. ..+....+.+...+.. .+..+|++| .+......+........+.+...+.++.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 55667799999942 1234444556666655 344466666 4556665554443234677666654443
No 254
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.32 E-value=0.021 Score=60.95 Aligned_cols=104 Identities=9% Similarity=0.015 Sum_probs=43.3
Q ss_pred hhcCCCCcEEecCCcCCCccccccccccCCCcEEEecccccccccccCCCCCCCCEeccccccCcccc-hhhccCCCCcC
Q 036168 620 ICELHSLQTVCLGGCRELEELPKDIRYLVNLRMFVVSTKQKSLLESGIGCLSSLRFLMISDCENLEYL-FDDIDQLCVLR 698 (846)
Q Consensus 620 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~ 698 (846)
+..+.+|+.+.+..+ ........+..+.+|+.+.+..+....-...+..+.+|+.+.+..+ +..+ ...+..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc--ceeccccccccccccc
Confidence 344455555554331 1111123334455555555544322222233444555555554321 2222 22344555555
Q ss_pred EEEeecCCCCcccc-ccccCCCCcCeEecc
Q 036168 699 TIFIADCPRLISLP-PAVKYLSSLETLMLE 727 (846)
Q Consensus 699 ~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~ 727 (846)
.+.+.++ .++.++ ..|.+|++|+.+.|.
T Consensus 290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 5555433 223332 234555555555553
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.23 E-value=0.013 Score=57.66 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=60.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC---------------------
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN--------------------- 250 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------------- 250 (846)
.+++|+|++|+|||||++.++...... -..++|+.... ....+...+. .+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999998643221 12356665433 3334333332 221100
Q ss_pred --CCCCCHHHHHHHHHHHh---cCceEEEEeeccCCC---ChhhHHHHHHhhCC--CCCCcEEEEeCCCh
Q 036168 251 --PGDLDTDQLRRILRDRL---NGEIYLLVMDDVWNE---DPKVWDELKSLLLG--SAKGSKILVTTRSN 310 (846)
Q Consensus 251 --~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iiiTtR~~ 310 (846)
....+..++...+...+ +.++.+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01124555555555444 223349999987521 32233333333221 12467888888765
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.19 E-value=0.046 Score=55.76 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=44.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED-FEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
..+++|+|.+|+||||++..++......... .+..+..... ....+.+....+..+-......+...+...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 5699999999999999999998643321222 3444443221 122222322222222111112234444444443 3 3
Q ss_pred ceEEEEeecc
Q 036168 270 EIYLLVMDDV 279 (846)
Q Consensus 270 kr~LlVlDdv 279 (846)
+.=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 3458889943
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.033 Score=51.79 Aligned_cols=20 Identities=50% Similarity=0.770 Sum_probs=18.7
Q ss_pred eEEEEecCCCCcHHHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLV 211 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v 211 (846)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.08 E-value=0.0076 Score=56.82 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHhhccCCceeEEEeCCC-Chh-----hhhhhhcccCccCeeeccCCCccc----ccchhhhcCCCCcEEecCCcC
Q 036168 568 ILTSCISKSQFLRVIDLSDS-AIE-----VLSREIGNLKHLRYLDLSGHDKIK----KLPNSICELHSLQTVCLGGCR 635 (846)
Q Consensus 568 ~~~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~l~~L~~L~L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~ 635 (846)
.+...+.+-+.|+.|+|+++ .+. .+-..+..-++|+.|+|++|.... .+...+..-+.|++|+|++|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34444555566666666654 443 233444445556666666554221 122223333445555554444
No 259
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.016 Score=60.51 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=53.2
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-----NPGDLDTDQLRRILR 264 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 264 (846)
.-+++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++-. .....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3479999999999999999999874322 22346788776666544 33333211 112235566655555
Q ss_pred HHhc-CceEEEEeeccCC
Q 036168 265 DRLN-GEIYLLVMDDVWN 281 (846)
Q Consensus 265 ~~l~-~kr~LlVlDdv~~ 281 (846)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5443 4456899998743
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.01 E-value=0.022 Score=65.95 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=81.2
Q ss_pred cCCccccchHHHHHHHHHHhcCCC-------CCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc
Q 036168 162 LPSEIIGRDEDREKIIELLMQTND-------GESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE 234 (846)
Q Consensus 162 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 234 (846)
.-.++.|.++..++|.+.+.-+.. ......+-|.++|++|.|||.+|+++++. .... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc---
Confidence 345678888888888776643211 01123456789999999999999999984 2222 233321
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCC--------------hhhHHHHHHhhCCCC--
Q 036168 235 QRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNED--------------PKVWDELKSLLLGSA-- 298 (846)
Q Consensus 235 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~~-- 298 (846)
. +++... ...+...+...+...-+..+.+|++|+++..- .....+|...+....
T Consensus 545 -~----~l~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 -P----ELLTMW-----FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -H----HHHTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -c----hhhccc-----cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1 122211 12233333333333335578999999985321 011233444444322
Q ss_pred CCcEEEEeCCChHHHH--HhCCCCCCCcEecCCCChHHHHHHHHHhh
Q 036168 299 KGSKILVTTRSNKVAS--IMGTMRGTAGYKLEGLPYESCLSLFMKCA 343 (846)
Q Consensus 299 ~gs~iiiTtR~~~~~~--~~~~~~~~~~~~l~~l~~~~a~~L~~~~a 343 (846)
.+--||-||..++... ......-...+.+..-+.++-.++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2323333555443211 11111223467776666666677777655
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.93 E-value=0.023 Score=58.28 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=26.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEe
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICV 229 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 229 (846)
.+++|.|.+|+|||||++.++........ ..++|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~ 72 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML 72 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence 59999999999999999998864322211 13556654
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.89 E-value=0.025 Score=57.14 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=51.8
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHH-HHHHHHH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQL-RRILRDR 266 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-~~~l~~~ 266 (846)
++.|+|++|+||||||.+++........-..++|++....++... ++.++-.. ....+.+++ ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 689999999999999988876432221124578998877776532 44443221 012244554 3333222
Q ss_pred --h-cCceEEEEeeccCC
Q 036168 267 --L-NGEIYLLVMDDVWN 281 (846)
Q Consensus 267 --l-~~kr~LlVlDdv~~ 281 (846)
+ .++.-++|+|.+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999998843
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.84 E-value=0.022 Score=59.82 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=52.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILRD 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 265 (846)
-+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458999999999999999988864322 223688998877665431 23332110 112355666666665
Q ss_pred Hhc-CceEEEEeeccC
Q 036168 266 RLN-GEIYLLVMDDVW 280 (846)
Q Consensus 266 ~l~-~kr~LlVlDdv~ 280 (846)
..+ ...-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 334589999874
No 264
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.77 E-value=0.025 Score=53.34 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=80.1
Q ss_pred hhhhhcccccceEEEeccC-CCc-chhHHHHHhhccCCceeEEEeCCCChh-----hhhhhhcccCccCeeeccCCCccc
Q 036168 542 FSSLLSDSRRARTILFPIN-DEK-TNQSILTSCISKSQFLRVIDLSDSAIE-----VLSREIGNLKHLRYLDLSGHDKIK 614 (846)
Q Consensus 542 ~~~~~~~~~~lr~l~l~~~-~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~l~~L~~L~L~~~~~~~ 614 (846)
+...+.+.+.|+.|.+..+ ..+ .....+...+..-..|+.|+|++|.+. .+...+..-+.|+.|+|++|....
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4456677788999998753 333 223446677788889999999999986 345566677899999999887443
Q ss_pred ----ccchhhhcCCCCcEEecCCcCC--Cc-----cccccccccCCCcEEEecccc
Q 036168 615 ----KLPNSICELHSLQTVCLGGCRE--LE-----ELPKDIRYLVNLRMFVVSTKQ 659 (846)
Q Consensus 615 ----~lp~~~~~l~~L~~L~l~~~~~--~~-----~~p~~~~~l~~L~~L~l~~~~ 659 (846)
.+-..+..-+.|++|+|++|.. +. .+...+..-+.|+.|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2334455567799999986532 22 133445566677777776554
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.76 E-value=0.0095 Score=57.16 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 169 RDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 169 r~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
|++.++++.+.+..... ....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56677888888765321 3457999999999999999999876
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.75 E-value=0.023 Score=59.07 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=37.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|+|.+|+||||||.+++....... .-..++|++....++...+.. ++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 46899999999999999999876421111 023578998877766665543 33443
No 267
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.74 E-value=0.026 Score=59.12 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=52.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILRD 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 265 (846)
-+++.|+|.+|+||||||.+++.... ..-..++|++.....+.. .++.++-.. ....+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 46899999999999999999886432 222357888887766543 133332110 112245555555554
Q ss_pred Hhc-CceEEEEeeccCC
Q 036168 266 RLN-GEIYLLVMDDVWN 281 (846)
Q Consensus 266 ~l~-~kr~LlVlDdv~~ 281 (846)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 443 3456999998743
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.0021 Score=60.72 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=52.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ--NPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 269 (846)
.++.|+|+.|+||||++..++...... ... ++++..... .+.....+...++.. .....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KKK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCE-EEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCe-EEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 478899999999999996666532222 222 333322111 000000000000000 00001111 12233334
Q ss_pred ceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 270 EIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
+.-+|++|.+...+.+..+.+...... |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 556999999987655555555544443 67899988744
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.64 E-value=0.073 Score=52.28 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=36.3
Q ss_pred CCCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhC---CCCCCcEEEEeCCChHHHH
Q 036168 253 DLDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLL---GSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 253 ~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~---~~~~gs~iiiTtR~~~~~~ 314 (846)
..+..+.++ .+...+-.++-+++||+.-. .|......+...+. ....|..||++|.+.....
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 344444433 23444555667899998643 24445556666663 2234777888998876544
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.61 E-value=0.026 Score=58.67 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=37.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhc---------cC-----CeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQE---------HF-----KLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++.. ++..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 46999999999999999998875321111 11 3578898877776665553 33444
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.58 E-value=0.04 Score=57.65 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=36.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQIMT 240 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~ 240 (846)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 357999999999999999998876422211 224678998877766665543
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.58 E-value=0.034 Score=57.14 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=32.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 166 IIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 166 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
++|....+..+...+...... ..+.+|+|.|+.|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~--~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEP--KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC--CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCC--CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345555555555555543222 5578999999999999999998875
No 273
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.57 E-value=0.021 Score=56.49 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=32.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhc----cCCeeEEEEecCcccHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQE----HFKLKIWICVSEDFEQRQI 238 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~ 238 (846)
-.++.|+|++|+|||||+..++....... .-..++|+.....+....+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 35999999999999999999876321111 1246788877665444433
No 274
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.026 Score=58.55 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhh-ccCCeeEEEEecCcc
Q 036168 175 KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQ-EHFKLKIWICVSEDF 233 (846)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~ 233 (846)
++++.+..-. .-..++|+|.+|.|||||++.+.+..... ..+. ++++-+.+..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4555555442 23588999999999999999987642211 1222 3456566554
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.45 E-value=0.069 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999887643
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.34 E-value=0.18 Score=49.07 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHh-hCCCCCCcEEEEeCCChHHHHH
Q 036168 253 DLDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSL-LLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 253 ~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~-l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
..+..+.++ .+...+-.++-+++||+.-. -|...-..+... +.....|..||++|.+......
T Consensus 130 ~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 344444333 34445556677999998643 244555566664 3333346789999998876653
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.013 Score=56.66 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 171 EDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 171 ~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+-+++|.+.+.... ....+|+|+|+.|.|||||++.+...
T Consensus 6 ~~~~~~~~~~~~~~----~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPRQ----PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTTC----CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666654421 34579999999999999999999864
No 278
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.26 E-value=0.034 Score=58.22 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=50.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILRD 265 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 265 (846)
-+++.|+|.+|+||||||.+++..... .-..++|++....++... +..++... ....+.+++.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 468999999999999999998864322 223588898877666432 23332110 011234555555443
Q ss_pred Hh-cCceEEEEeeccC
Q 036168 266 RL-NGEIYLLVMDDVW 280 (846)
Q Consensus 266 ~l-~~kr~LlVlDdv~ 280 (846)
.. ..+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2344589999874
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.25 E-value=0.12 Score=53.21 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35899999999999999999886433222 457777654 55667777776554
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.14 E-value=0.0093 Score=55.90 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 281
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.11 E-value=0.049 Score=59.71 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=55.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH------
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDR------ 266 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~------ 266 (846)
.+.|.|.+|+||||++..+.......+ ...++.+ ....... ..+.+.++.. ..... ..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~-a~T~~Aa----~~l~~~~~~~---~~T~h---~~~~~~~~~~~~ 114 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG-ETGIILA-APTHAAK----KILSKLSGKE---ASTIH---SILKINPVTYEE 114 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEE-ESSHHHH----HHHHHHHSSC---EEEHH---HHHTEEEEECSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEe-cCcHHHH----HHHHhhhccc---hhhHH---HHhccCcccccc
Confidence 889999999999999998887432222 2223333 2222111 1222211100 00111 111100
Q ss_pred ----------hcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 267 ----------LNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 267 ----------l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
...+.-++|+|++...+...+..+...++ .+.++++..=..
T Consensus 115 ~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~ 165 (459)
T 3upu_A 115 NVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNK 165 (459)
T ss_dssp CEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTT
T ss_pred cchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHH
Confidence 00123489999998877777777777765 456777765433
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.95 E-value=0.012 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.94 E-value=0.086 Score=53.84 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=23.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
....+++|+|.+|+||||++..++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346799999999999999999998743
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.90 E-value=0.012 Score=54.80 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999976
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.89 E-value=0.0051 Score=72.36 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=37.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQTNDG-------ESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-.+++|.++..++|.+.+.-.... .-...+.+.++|++|+||||||+.++..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 456789888888888776432100 0023457889999999999999999974
No 286
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.88 E-value=0.13 Score=53.59 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCCCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCC--CCCCcEEEEeCCChHHHHHhC
Q 036168 252 GDLDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLG--SAKGSKILVTTRSNKVASIMG 317 (846)
Q Consensus 252 ~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~~~~~~~ 317 (846)
...+..+.++ .|...|..++=+|++|.--. .|...-..+...+.. ...|..||++|.+.+.+..++
T Consensus 162 ~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 3445444433 45566777888999998633 233333444444432 123678999999988776543
No 287
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.86 E-value=0.018 Score=61.00 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 165 EIIGRDEDREKIIELLMQT-------N--DGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|.+..++.+...+... . .......+.+.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689998888888777210 0 000023457889999999999999999874
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.85 E-value=0.025 Score=57.53 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.4
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999976
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.77 E-value=0.015 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.73 E-value=0.046 Score=58.72 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=33.1
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc-HHHHHHHHH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE-QRQIMTKII 243 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~ 243 (846)
.++|+|.+|+|||||+..+....... .-+..+++-+.+..+ ..+++.++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 68899999999999999998753322 224456666665543 344555454
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.68 E-value=0.26 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=22.9
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
.+++|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 292
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.66 E-value=0.25 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+.+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.62 E-value=0.016 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.58 E-value=0.1 Score=53.92 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=36.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 58999999999999999999875332 2234666654 455677777776654
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.57 E-value=0.027 Score=56.19 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++...+....... ..+.+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSS-KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCC-SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcc-cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444332222 4568999999999999999999976
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.57 E-value=0.032 Score=57.62 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 167 IGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 167 vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
|+.+...+++.+.+...-.. .....|.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44556666676666432211 23567899999999999999998873
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.54 E-value=0.018 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999976
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.48 E-value=0.017 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.48 E-value=0.022 Score=54.52 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999874
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.47 E-value=0.015 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 301
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.41 E-value=0.019 Score=53.82 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999763
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.36 E-value=0.016 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 303
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.34 E-value=0.028 Score=52.96 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 172 DREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 172 ~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-+..+..++... ++...+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 356666666431 33457899999999999999888874
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.30 E-value=0.032 Score=58.43 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=61.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
.+++|+|+.|+||||+.+.+.... .......+ +++..+.... .......+..... ..+.......+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~-~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHI-LTIEDPIEFV--HESKKCLVNQREV-HRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEE-EEEESSCCSC--CCCSSSEEEEEEB-TTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEE-EEccCcHHhh--hhccccceeeeee-ccccCCHHHHHHHHhhhCc
Confidence 499999999999999999887632 21112222 2222221100 0000000000000 0011223446777888888
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHHH
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVASI 315 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~~ 315 (846)
=+|++|.+- +.+.++.+..... .|..||+|+...+....
T Consensus 198 dvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 198 DIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred CEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 899999994 4555555444432 36679999987765543
No 305
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.27 E-value=0.024 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|+|.|++|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999999976
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.25 E-value=0.033 Score=55.18 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+..|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.24 E-value=0.027 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+++|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.22 E-value=0.021 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 309
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.21 E-value=0.29 Score=50.91 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred CCHHHHHH-HHHHHhcCceEEEEeeccCC-CChhhHHHHHHhhCCC--CCCcEEEEeCCChHHHHHhC
Q 036168 254 LDTDQLRR-ILRDRLNGEIYLLVMDDVWN-EDPKVWDELKSLLLGS--AKGSKILVTTRSNKVASIMG 317 (846)
Q Consensus 254 ~~~~~~~~-~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iiiTtR~~~~~~~~~ 317 (846)
.+..+.++ .|...|-.++=+|+||.--. .|...-..+...+..- ..|..||++|.+...+..++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 34444332 34556667778999997532 2333333333333221 12567999999987665543
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.21 E-value=0.023 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.023 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.17 E-value=0.024 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...|+|+|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.17 E-value=0.074 Score=55.68 Aligned_cols=46 Identities=28% Similarity=0.356 Sum_probs=31.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhh---ccC-CeeEEEEecCccc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQ---EHF-KLKIWICVSEDFE 234 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~ 234 (846)
..-.++.|+|++|+|||||++.++...... +.. ..++|++....+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 335799999999999999999988642111 111 2348887665543
No 314
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.16 E-value=0.11 Score=55.13 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=34.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhh----hccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSV----QEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|+|++|+|||||+..++-.... ...-..++|++....+....+ +.+++.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~ 236 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRF 236 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHc
Confidence 459999999999999999976522111 112345788877665554433 2344443
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.15 E-value=0.022 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.026 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999864
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.13 E-value=0.022 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 318
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.13 E-value=0.13 Score=57.05 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=37.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG 248 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 248 (846)
-.++.|.|.+|+||||+|..++.+..... =..++|++... +..++...++....+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNR 296 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcC
Confidence 35889999999999999999887532221 12467776543 456777777665543
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.12 E-value=0.019 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 320
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.07 E-value=0.026 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=20.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997553
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.07 E-value=0.025 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.5
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999999986
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.02 E-value=0.029 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999974
No 323
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.98 E-value=0.029 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++++|.|.|++|+||||.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999873
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.96 E-value=0.027 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999976
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.94 E-value=0.025 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.93 E-value=0.22 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
..+++|.++|.+|+||||++..++...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998743
No 327
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.93 E-value=0.029 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.92 E-value=0.03 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.91 E-value=0.031 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998763
No 330
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.90 E-value=0.03 Score=57.59 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=28.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEec
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVS 230 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 230 (846)
.+.++|+|+|-||+||||.+-.++.... ..-..+.-+.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 4578999999999999999988876422 222235556654
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.89 E-value=0.023 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|+|+|++|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999763
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.87 E-value=0.03 Score=54.05 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=21.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.87 E-value=0.024 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999863
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.86 E-value=0.031 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.84 E-value=0.2 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=22.4
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|+.|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.84 E-value=0.023 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.79 E-value=0.032 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.9
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.79 E-value=0.037 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.78 E-value=0.032 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.77 E-value=0.031 Score=56.06 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.76 E-value=0.035 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.76 E-value=0.029 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 343
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.74 E-value=0.084 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.74 E-value=0.029 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 345
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.73 E-value=0.16 Score=55.15 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=37.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT 247 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 247 (846)
-.++.|.|.+|+||||+|..++........ ..++|++.. .+..++...++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 358999999999999999999875332211 246676654 455677777765543
No 346
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.73 E-value=0.34 Score=51.94 Aligned_cols=65 Identities=26% Similarity=0.379 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHHHHH
Q 036168 175 KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKIIKS 245 (846)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 245 (846)
+.++.|..-.. -.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-+.+.. +..++++++.+.
T Consensus 142 r~ID~l~pigk-----GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAK-----GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEET-----TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccccc-----CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 35555654322 2478999999999999999988742 12233567777776654 345666666553
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.71 E-value=0.032 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.70 E-value=0.023 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 349
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.68 E-value=0.18 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||.+.++-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999974
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.67 E-value=0.021 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=16.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 351
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.65 E-value=0.18 Score=54.99 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=34.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHH
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIK 244 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 244 (846)
-.++.|.|.+|+||||||..++........ ..++|++... +..++...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHHH
Confidence 358999999999999999999875332211 2466776443 44566666543
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.62 E-value=0.034 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.9
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.62 E-value=0.036 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.5
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999976
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.60 E-value=0.029 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.60 E-value=0.082 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 356
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.59 E-value=0.15 Score=54.84 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHHHH
Q 036168 176 IIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKIIK 244 (846)
Q Consensus 176 l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 244 (846)
.++.|..-..| .-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+.. +..++++++..
T Consensus 155 vID~l~pigkG-----qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPYRRG-----GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCCCTT-----CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred EeeeecccccC-----CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 45556554322 468999999999999999888742 12234677888777665 45566666654
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.58 E-value=0.027 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.55 E-value=0.035 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+.+|+|+|+.|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.53 E-value=0.034 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.45 E-value=0.037 Score=51.12 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.5
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.43 E-value=0.03 Score=52.48 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.42 E-value=0.044 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.41 E-value=0.038 Score=54.01 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 364
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.39 E-value=0.064 Score=52.31 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 170 DEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 170 ~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
++..+.+...+.. .....|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555555533 34678899999999999999998864
No 365
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.37 E-value=0.42 Score=50.80 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=67.4
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH-HHH
Q 036168 165 EIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT-KII 243 (846)
Q Consensus 165 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-~i~ 243 (846)
.++|....++++.+.+..... ... .|.|.|..|+|||++|+.+....... -...+-++++. -..+++. ++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~--~~~~~~~~elf 209 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVAS--IPRDIFEAELF 209 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTT--SCHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCC--CCHHHHHHHhc
Confidence 356666667777666654332 223 34899999999999999987632111 11122333332 2222222 222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCC------C-----CCcEEEEeCCC
Q 036168 244 KSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGS------A-----KGSKILVTTRS 309 (846)
Q Consensus 244 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iiiTtR~ 309 (846)
..-.+.-.+.... ....+. . ...-.|+||++..........+...+... + ...+||.||..
T Consensus 210 g~~~g~~tga~~~--~~g~~~-~--a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 210 GYEKGAFTGAVSS--KEGFFE-L--ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CBCTTSSTTCCSC--BCCHHH-H--TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCcccc--cCCcee-e--CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 2111111111000 000111 1 12247889999888777777777765421 1 24567776654
No 366
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.37 E-value=0.048 Score=58.50 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCccccchHHHHHHHHHHhcC-------CC-CCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 163 PSEIIGRDEDREKIIELLMQT-------ND-GESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 163 ~~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...++|.++.++.+...+... .. .....++-|.++|++|+||||+|+.++..
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 356899998888887766321 00 00013456889999999999999999873
No 367
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.36 E-value=0.033 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999876
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.36 E-value=0.38 Score=49.94 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 174 EKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 174 ~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-++++.+..-.. -.-++|+|.+|+|||+|+..+.+.
T Consensus 163 iraID~l~Pigr-----GQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIGK-----GQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCBT-----TCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccccC-----CceEEEecCCCCChhHHHHHHHHH
Confidence 356666765432 247799999999999999998874
No 369
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.34 E-value=0.042 Score=51.89 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=21.4
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999886
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.33 E-value=0.043 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHh
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~ 212 (846)
..+.+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999987
No 371
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.31 E-value=0.12 Score=58.18 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=53.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHh---
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILR-DRL--- 267 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l--- 267 (846)
+++.|.|.+|.||||++..+....... . ..+.+..........+ .+.+... ......+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~-g--~~Vl~~ApT~~Aa~~L----~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL-G--LEVGLCAPTGKAARRL----GEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT-T--CCEEEEESSHHHHHHH----HHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc-C--CeEEEecCcHHHHHHh----Hhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 588899999999999999888643221 2 2344443332222222 2222100 001110000000 000
Q ss_pred -c-CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeC
Q 036168 268 -N-GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTT 307 (846)
Q Consensus 268 -~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTt 307 (846)
. .+--+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0 022399999998777777777766554 466777654
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.27 E-value=0.04 Score=52.29 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.27 E-value=0.037 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.17 E-value=0.038 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.11 E-value=0.05 Score=55.91 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34579999999999999999998763
No 376
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.10 E-value=0.31 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 377
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.09 E-value=0.051 Score=53.86 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998876
No 378
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.09 E-value=0.18 Score=53.19 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHH-HH
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMT-KI 242 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~-~i 242 (846)
..++|....+.++...+..... . ...|.|.|.+|.||+++|+.+....... .. |+.+....-..+++. .+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~-~~~vli~GesGtGKe~lAr~ih~~s~r~---~~--fv~vnc~~~~~~~~~~~l 199 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---S-KAPVLITGESGTGKEIVARLIHRYSGRK---GA--FVDLNCASIPQELAESEL 199 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---S-CSCEEEECCTTSSHHHHHHHHHHHHCCC---SC--EEEEESSSSCTTTHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---c-chhheEEeCCCchHHHHHHHHHHhcccc---CC--cEEEEcccCChHHHHHHh
Confidence 3577877777666665533221 1 2246799999999999999998632211 22 333332221222222 22
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhC
Q 036168 243 IKSITGQNPGDLDTDQLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLL 295 (846)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 295 (846)
...-.+.-.+.... ....+.. . ..-.|+||++.+........|...+.
T Consensus 200 fg~~~g~~tga~~~--~~g~~~~--a-~~gtlfldei~~l~~~~Q~~Ll~~l~ 247 (368)
T 3dzd_A 200 FGHEKGAFTGALTR--KKGKLEL--A-DQGTLFLDEVGELDQRVQAKLLRVLE 247 (368)
T ss_dssp HEECSCSSSSCCCC--EECHHHH--T-TTSEEEEETGGGSCHHHHHHHHHHHH
T ss_pred cCccccccCCcccc--cCChHhh--c-CCCeEEecChhhCCHHHHHHHHHHHH
Confidence 21111111111000 0001111 1 22369999999888777777777764
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.09 E-value=0.065 Score=52.06 Aligned_cols=41 Identities=27% Similarity=0.233 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 168 GRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 168 Gr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+.++..+.+...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555556555543 34679999999999999999998864
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.02 E-value=0.046 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 381
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.99 E-value=0.31 Score=47.67 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=45.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhh-hccC-CeeEEEEecCcccHHHHHHHHHHHhcCCCC---------------CC-
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSV-QEHF-KLKIWICVSEDFEQRQIMTKIIKSITGQNP---------------GD- 253 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~- 253 (846)
+.+.|.|..|.||||+...+.-+... .... ...+.+.........++...+...+..... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999877555432111 1111 123333333322333444444443321100 11
Q ss_pred ----CCHHHHHHHHHHHhcCceEEEEeeccCCC
Q 036168 254 ----LDTDQLRRILRDRLNGEIYLLVMDDVWNE 282 (846)
Q Consensus 254 ----~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 282 (846)
...+.+.+.+...+.+- -+||+|.++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 13455556665544332 47899999764
No 382
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.94 E-value=0.1 Score=45.64 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=28.4
Q ss_pred EEEeCCCChh--hhhhhhcccCccCeeeccCCCcccccc-hhhhcCCCCcEEecCCcC
Q 036168 581 VIDLSDSAIE--VLSREIGNLKHLRYLDLSGHDKIKKLP-NSICELHSLQTVCLGGCR 635 (846)
Q Consensus 581 ~L~L~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 635 (846)
.++.+++.++ .+|..+. .+|++|+|++|. ++.+| ..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 5566666665 5654322 356666666554 33343 334556666666666554
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.90 E-value=0.058 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 384
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.88 E-value=0.7 Score=50.55 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCC---CCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 173 REKIIELLMQTNDG---ESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 173 ~~~l~~~L~~~~~~---~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|.+++...... ....+++|+|+|.+|+||||++.+++..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555432211 1135789999999999999999999864
No 385
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.88 E-value=0.065 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-.+++|.|+.|.|||||++.++..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 359999999999999999999863
No 386
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.87 E-value=0.052 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999875
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.78 E-value=0.062 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 388
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.78 E-value=0.31 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.78 E-value=0.041 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999863
No 390
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.77 E-value=0.29 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++++|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999874
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.76 E-value=0.051 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.76 E-value=0.059 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.69 E-value=0.32 Score=51.32 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeE-EEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKI-WICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNG 269 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 269 (846)
..+++|+|+.|+||||+++.+...... .....+ ++. ..... ..+.-...+.....+ .+...+...+...+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e--~~~e~--~~~~~~~~v~Q~~~g-~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIE--DPIEY--VFKHKKSIVNQREVG-EDTKSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEE--SSCCS--CCCCSSSEEEEEEBT-TTBSCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEec--ccHhh--hhccCceEEEeeecC-CCHHHHHHHHHHHhhh
Confidence 468999999999999999998863221 112233 222 11110 000000000000000 0111223456666666
Q ss_pred ceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 270 EIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 270 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
.+=+|++|.+- +.+......... ..|..|+.|+...++..
T Consensus 209 ~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 209 DPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred CcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 67789999984 333333333332 24666888887665433
No 394
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.68 E-value=0.1 Score=49.57 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=54.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNP--GDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 268 (846)
-.+..++|..|.||||.|......... ......+ +... .+.+.-...+.+.++.... ...+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli-~k~~--~d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIV-FKPC--IDNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEE-EECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEE-EEec--cCCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 468889999999999999877764332 2333333 3211 1112122234443321100 011111 2222333
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChH
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNK 311 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 311 (846)
++--+|++|.+.-.+.+..+.+....+ .|-.||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333499999997766556655554333 2668999999653
No 395
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.66 E-value=0.049 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.65 E-value=0.057 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.64 E-value=0.055 Score=52.42 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 398
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.61 E-value=0.27 Score=50.87 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=54.7
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGEI 271 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 271 (846)
.+++|+|+.|.|||||++.+...... -...+.+.-......... +..+.-+.+ ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~-~~~i~~~~g------gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH-KNYTQLFFG------GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC-SSEEEEECB------TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc-hhEEEEEeC------CChhHHHHHHHHhhhCC
Confidence 48999999999999999999863221 233444432111110000 000000000 11123345566677777
Q ss_pred EEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHH
Q 036168 272 YLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKV 312 (846)
Q Consensus 272 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~ 312 (846)
=+|++|++-. .+.++.+.. +..+ +..+|+||.....
T Consensus 242 ~ilildE~~~--~e~~~~l~~-~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYNV-LCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCS--THHHHHHHH-HHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCCh--HHHHHHHHH-HhcC--CCEEEEEEcccHH
Confidence 8899999854 344544433 3322 2236777765543
No 399
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.61 E-value=0.16 Score=48.11 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=30.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKII 243 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 243 (846)
.|+|-|..|+||||.++.+++.. ......+++..-.......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 47889999999999999998743 32222344443333333444455544
No 400
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.59 E-value=0.059 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.1
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|+.|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999999864
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.56 E-value=0.12 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 402
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.56 E-value=0.062 Score=52.04 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999998763
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.47 E-value=0.033 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 404
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.11 Score=48.93 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=21.8
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999988764
No 405
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.30 E-value=0.049 Score=51.35 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ--NPGDLDTDQLRRILRDRLN 268 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~ 268 (846)
-++..++|..|.||||.+..+.+... ...+...++ .... +.+.-...+...++.. .....+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~-k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVF-KPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE-EEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEE-Eecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 46999999999999999988877533 223333333 2111 1111111122222100 00001111 2333333
Q ss_pred CceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 269 GEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 269 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
++-=+|++|.+...+.+..+.+....+. |..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEeccc
Confidence 3334999999876655556655554332 67899998865
No 406
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.30 E-value=0.67 Score=50.11 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=35.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSI 246 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 246 (846)
-.++.|.|.+|+||||+|..++.+...+ -..++|++.. .+..++...++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 3589999999999999999998754332 2246666544 34455666665543
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.27 E-value=0.43 Score=51.60 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|..|+|||||++.++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999999864
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.24 E-value=0.075 Score=60.43 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=36.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899999888888887542 47899999999999999999873
No 409
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.22 E-value=0.5 Score=47.96 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+++++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998864
No 410
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.21 E-value=0.45 Score=50.75 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=56.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ---NPGDLDTDQLRRILRD 265 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~ 265 (846)
...++..|.|.+|.||||+.++.++. .....+ +.. .....++-+.+... .............+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVl--TpT---~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLIL--VPG---RQAAEMIRRRANASGIIVATKDNVRTVDSFLMN 226 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEE--ESC---HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEE--eCC---HHHHHHHHHHhhhcCccccccceEEEeHHhhcC
Confidence 56789999999999999999888762 112222 222 22334444444211 1112222222233332
Q ss_pred HhcCc---eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC
Q 036168 266 RLNGE---IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 266 ~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR 308 (846)
....+ -=++|+|++...+...+..+....+. .++|+.-=
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~----~~vilvGD 268 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLC----DIAYVYGD 268 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTC----SEEEEEEC
T ss_pred CCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCC----CEEEEecC
Confidence 21111 24899999977766666655554332 56666554
No 411
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.16 E-value=0.064 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEecCCCCcHHHHHHHHhcch
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988643
No 412
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.14 E-value=0.14 Score=53.84 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..++...+.... .+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444555554322 34679999999999999999988764
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.06 E-value=0.087 Score=54.04 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.05 E-value=0.17 Score=64.08 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=53.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQ-----NPGDLDTDQLRRIL 263 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 263 (846)
...+.+.|+|++|+|||+||.++..... .+=..++|+++.+..+... ++.++.. .....+.++..+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3457999999999999999999987422 2223577887777766555 2333210 00112334555555
Q ss_pred HHHh-cCceEEEEeeccC
Q 036168 264 RDRL-NGEIYLLVMDDVW 280 (846)
Q Consensus 264 ~~~l-~~kr~LlVlDdv~ 280 (846)
+... +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5443 3456799999984
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.04 E-value=0.077 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 416
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.02 E-value=0.077 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
-.+++|+|+.|+|||||++.++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999975
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.02 E-value=0.064 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.01 E-value=0.15 Score=49.83 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.7
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
...+|+|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998743
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.00 E-value=0.08 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 420
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.99 E-value=0.086 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999864
No 421
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.99 E-value=0.075 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999998874
No 422
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.98 E-value=0.074 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.98 E-value=0.075 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|.|.|++|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 424
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.96 E-value=0.14 Score=57.03 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=58.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc---------------CCCCCCCC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT---------------GQNPGDLD 255 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---------------~~~~~~~~ 255 (846)
-.+++|.|.+|+|||||++.++...... -..++++..... ..++...+ ..++ ...+...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 3599999999999999999998642221 112445543322 23333222 1110 11112234
Q ss_pred HHHHHHHHH-HHhcCceEEEEeeccCCCChh-----hHHH---HHHhhCCCCCCcEEEEeCCCh
Q 036168 256 TDQLRRILR-DRLNGEIYLLVMDDVWNEDPK-----VWDE---LKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 256 ~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~-----~~~~---l~~~l~~~~~gs~iiiTtR~~ 310 (846)
.++.+..+. ..+..++-++|+|-+...+.. .... +...+. ..|..||+||.+.
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 555554444 344566779999943211111 2222 223332 2366788888654
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.94 E-value=0.078 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.375 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.90 E-value=0.076 Score=51.70 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 427
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.89 E-value=0.43 Score=52.09 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcc-cHHHHHHHH
Q 036168 175 KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDF-EQRQIMTKI 242 (846)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 242 (846)
+.++.|..-.. -.-++|.|..|+|||+|+..+.+. .+-+.++++-+.+.. +..++++++
T Consensus 221 rvID~l~Pigr-----Gqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTK-----GGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBT-----TCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccC-----CCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 35566655432 347899999999999999998773 233567787777663 344444443
No 428
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.88 E-value=0.21 Score=48.25 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.3
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcch
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
....+|.|.|..|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998754
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.86 E-value=0.055 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.79 E-value=0.076 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999863
No 431
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.78 E-value=0.66 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 432
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.78 E-value=0.085 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 433
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.77 E-value=0.056 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=16.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHh
Q 036168 191 VSVIPIVGLGGLGKTALAKLVY 212 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~ 212 (846)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 434
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.75 E-value=0.17 Score=52.01 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=29.2
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSED 232 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 232 (846)
...++|+|+|-||+||||+|..++...... . ..++-|.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G-~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G-KRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T-CCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-C-CeEEEEeCCCC
Confidence 456889999999999999998888743222 2 24566666543
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.74 E-value=0.095 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...++|.|.|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999999986
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.71 E-value=0.084 Score=50.46 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=46.7
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhc---------CCCCCCCCHHHHHHHH
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSIT---------GQNPGDLDTDQLRRIL 263 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---------~~~~~~~~~~~~~~~l 263 (846)
+|.|.|++|+||||.|+.++... . ...++ ..+++++-+..-. -......+.+-+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------G-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------C-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------C-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 57889999999999999998732 1 12232 2334443222110 0011123445566777
Q ss_pred HHHhcCceEEEEeeccCCCChhhHHHHHHh
Q 036168 264 RDRLNGEIYLLVMDDVWNEDPKVWDELKSL 293 (846)
Q Consensus 264 ~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~ 293 (846)
.+.+..... +|||+.-. ...+.+.+...
T Consensus 69 ~~~l~~~~~-~ilDGfPR-t~~Qa~~l~~~ 96 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR-TVKQAEALDEM 96 (206)
T ss_dssp HHHCCSSSC-EEEESCCC-SHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCch-hHHHHHHHHhh
Confidence 777765443 67898732 23333444333
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.70 E-value=0.078 Score=51.21 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEecCCCCcHHHHHHHHhc
Q 036168 193 VIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.67 E-value=0.091 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.++|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 439
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.67 E-value=0.096 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.65 E-value=0.091 Score=56.58 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999873
No 441
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.63 E-value=0.042 Score=55.88 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=18.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.63 E-value=0.09 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999875
No 443
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.56 E-value=0.29 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..+|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.47 E-value=0.09 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 445
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.46 E-value=0.37 Score=52.40 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCccc-HHHHHHHH
Q 036168 175 KIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFE-QRQIMTKI 242 (846)
Q Consensus 175 ~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 242 (846)
++++.|..-.. -.-++|.|..|+|||+|+..+++. .+-+.++++-+.+... ..++++++
T Consensus 216 rvID~l~Pigk-----Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAK-----GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEET-----TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCccc-----CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 34556654322 247899999999999999998763 2335677888876654 44555554
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.45 E-value=0.092 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 447
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.42 E-value=0.14 Score=50.56 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=27.6
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecC
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSE 231 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 231 (846)
-.++.|.|.+|+||||||..++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999988875422 1223567776443
No 448
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.40 E-value=0.24 Score=43.22 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=5.8
Q ss_pred cCCCCcCEEEeecC
Q 036168 692 DQLCVLRTIFIADC 705 (846)
Q Consensus 692 ~~l~~L~~L~l~~~ 705 (846)
..+++|+.|+|.+|
T Consensus 52 ~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 52 DALPALRTAHLGAN 65 (130)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hhccccCEEEecCC
Confidence 33444444444443
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.14 E-value=0.11 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4466899999999999999999876
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.10 E-value=0.11 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999874
No 451
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.09 E-value=0.12 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.4
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999999874
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.09 E-value=0.081 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.+++|+|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 453
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.94 E-value=0.28 Score=47.89 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.5
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEE
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWI 227 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 227 (846)
..+|.|.|+.|+||||+++.+..... ..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeee
Confidence 46899999999999999999987533 2345534433
No 454
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.94 E-value=0.11 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.92 E-value=0.12 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.89 E-value=0.12 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.+.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999985
No 457
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.89 E-value=0.13 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.6
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
....++.+.|.||+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 458
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.84 E-value=1.4 Score=43.06 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=54.2
Q ss_pred EEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcC--C---------CCCC-----CCHH
Q 036168 194 IPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITG--Q---------NPGD-----LDTD 257 (846)
Q Consensus 194 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~---------~~~~-----~~~~ 257 (846)
+.|+|+.|.|||.+|..+.... . ..++++ +.. ..+..++.+.+.. . .... ...+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6789999999999998776532 1 223343 222 2233333333221 0 0000 0123
Q ss_pred HHHHHHHHHhcCceEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCC
Q 036168 258 QLRRILRDRLNGEIYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTR 308 (846)
Q Consensus 258 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR 308 (846)
.+..... .+..+--+||+|+++......+..+...++ ...++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3333222 333445699999998876667777766654 2335555544
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.83 E-value=0.1 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 460
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.83 E-value=0.32 Score=51.78 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=49.2
Q ss_pred EEEEecCCCCcHHHHHHHHhcchhhhccCC----eeEEEEecCcc-cHHHHHHHHHHH--hc-----CCCCCCCCHHHH-
Q 036168 193 VIPIVGLGGLGKTALAKLVYNDQSVQEHFK----LKIWICVSEDF-EQRQIMTKIIKS--IT-----GQNPGDLDTDQL- 259 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~~~~~~~~~~- 259 (846)
-++|.|.+|+|||+|+..+++.... +.+ .++++-+.+.. +..++++++... +. ....+.....+.
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 5789999999999999998874322 223 56666666543 455666665442 10 001111111111
Q ss_pred ----HHHHHHHh---cCceEEEEeecc
Q 036168 260 ----RRILRDRL---NGEIYLLVMDDV 279 (846)
Q Consensus 260 ----~~~l~~~l---~~kr~LlVlDdv 279 (846)
.-.+.+++ +++.+||++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11233444 378999999998
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.81 E-value=0.13 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||++.++-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 462
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.80 E-value=0.12 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999863
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.77 E-value=0.12 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 464
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.74 E-value=0.12 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999875
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.72 E-value=0.21 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.6
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+++|+|++|.|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999986
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.71 E-value=0.16 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999763
No 467
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.67 E-value=0.7 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEecCCCCcHHHHHHHHhcc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+++.|.|.+|.||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 58899999999999998877653
No 468
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.66 E-value=0.13 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 469
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.66 E-value=0.13 Score=50.91 Aligned_cols=22 Identities=50% Similarity=0.729 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 470
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.65 E-value=0.21 Score=49.28 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCcceeEEEEecCCCCcHHHHHHHHhc
Q 036168 173 REKIIELLMQTNDGESETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 173 ~~~l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
...+..++.... ++...|.|+|++|.|||.+|..+++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666665421 2235799999999999999999987
No 471
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.60 E-value=0.12 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=22.1
Q ss_pred cceeEEEEecCCCCcHHHHHHHHhc
Q 036168 189 ETVSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 189 ~~~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999876
No 472
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.58 E-value=0.13 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 473
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.57 E-value=0.32 Score=52.36 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHhcCCCCCCcceeEEEEecCCCCcHHHHH-HHHhcchhhhccCCe-eEEEEecCccc-HHHHHHHHHHHhcC----
Q 036168 176 IIELLMQTNDGESETVSVIPIVGLGGLGKTALA-KLVYNDQSVQEHFKL-KIWICVSEDFE-QRQIMTKIIKSITG---- 248 (846)
Q Consensus 176 l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~---- 248 (846)
.++.+..-.. -.-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+... ..++.+.+...=.-
T Consensus 152 aID~l~Pigr-----GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 152 AIDSMIPIGR-----GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHSSCCBT-----TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred eccccccccc-----CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 4555554322 246789999999999996 4676632 2443 46676766543 44555555542100
Q ss_pred ---CCCCCCCHHHH-----HHHHHHHh--cCceEEEEeecc
Q 036168 249 ---QNPGDLDTDQL-----RRILRDRL--NGEIYLLVMDDV 279 (846)
Q Consensus 249 ---~~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv 279 (846)
...++....+. .-.+.+++ +++.+|+++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 01111111111 11223333 589999999998
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.55 E-value=0.81 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|.|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998874
No 475
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.55 E-value=0.29 Score=46.92 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=54.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC----------CCCCCHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN----------PGDLDTDQLRR 261 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~ 261 (846)
-.|.+.|.||+||||+|..++.... ...++ +.++.+........ ..++..+.... ....+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 3477899999999999988887432 23444 33444433222221 11222221110 011233322
Q ss_pred HHHHHhcCceEEEEeeccCCC------ChhhHHHHHHhhCCCCCCcEEEEeCCCh
Q 036168 262 ILRDRLNGEIYLLVMDDVWNE------DPKVWDELKSLLLGSAKGSKILVTTRSN 310 (846)
Q Consensus 262 ~l~~~l~~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iiiTtR~~ 310 (846)
+ ..+.=++|+|++-.. ....|+.+...++. |..|+.|+.-+
T Consensus 81 -L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nlq 127 (228)
T 2r8r_A 81 -L----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNVQ 127 (228)
T ss_dssp -H----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEGG
T ss_pred -H----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEcccc
Confidence 2 224459999976421 12356666665543 55688777643
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.54 E-value=0.13 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.48 E-value=0.13 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.46 E-value=0.13 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEecCCCCcHHHHHHHHhcc
Q 036168 193 VIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 193 ~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 479
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.45 E-value=0.34 Score=52.21 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=48.2
Q ss_pred eEEEEecCCCCcHHHHH-HHHhcchhhhccCCe-eEEEEecCcc-cHHHHHHHHHHHhc-------CCCCCCCCHHHH--
Q 036168 192 SVIPIVGLGGLGKTALA-KLVYNDQSVQEHFKL-KIWICVSEDF-EQRQIMTKIIKSIT-------GQNPGDLDTDQL-- 259 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~-------~~~~~~~~~~~~-- 259 (846)
.-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+.. +..++.+.+...=. ....++....+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999996 5777642 2443 4667676654 34455555554210 001111111111
Q ss_pred ---HHHHHHHh--cCceEEEEeecc
Q 036168 260 ---RRILRDRL--NGEIYLLVMDDV 279 (846)
Q Consensus 260 ---~~~l~~~l--~~kr~LlVlDdv 279 (846)
.-.+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11223333 589999999998
No 480
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.44 E-value=0.13 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.42 E-value=0.34 Score=46.41 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=32.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHH
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIK 244 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 244 (846)
.+|.|.|..|+||||+++.+.+.... ..+..+++..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875332 23433333332222233444555554
No 482
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.38 E-value=0.14 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.3
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 358999999999999999998863
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.38 E-value=0.14 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.+.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.34 E-value=0.15 Score=50.81 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=55.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQNPGDLDTDQLRRILRDRLNGE 270 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 270 (846)
-.+++|+|+.|+|||||++.+.... ...+...+++.-. +... +.......+.....+ .+...+...+...+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~--~~~~~G~I~~~g~-~i~~--~~~~~~~~v~q~~~g-l~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIED-PIEY--VFKHKKSIVNQREVG-EDTKSFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH--HHHCCCEEEEEES-SCCS--CCCCSSSEEEEEEBT-TTBSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC--CCCCCCEEEEcCC-ccee--ecCCcceeeeHHHhC-CCHHHHHHHHHHHHhhC
Confidence 4699999999999999999988632 2122333333211 1000 000000000000000 00012234455555556
Q ss_pred eEEEEeeccCCCChhhHHHHHHhhCCCCCCcEEEEeCCChHHHH
Q 036168 271 IYLLVMDDVWNEDPKVWDELKSLLLGSAKGSKILVTTRSNKVAS 314 (846)
Q Consensus 271 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~~~~ 314 (846)
+=+|++|..- +.+....+.... ..|..|++||.+.+...
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 6688899985 433333333332 23667888888765443
No 485
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.34 E-value=0.41 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhcch
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
+.|+|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999998743
No 486
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.31 E-value=0.28 Score=47.55 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcch
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYNDQ 215 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~~ 215 (846)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.31 E-value=0.5 Score=59.96 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcchhhhccCCeeEEEEecCcccHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYNDQSVQEHFKLKIWICVSEDFEQRQIMTKIIKSITGQN-----PGDLDTDQLRRILR 264 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 264 (846)
.-+++.|+|++|+||||||.+++..... .-..++|++.....+... ++.++... ....+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 3469999999999999999999875332 223578888777666532 33443211 12235666666665
Q ss_pred HHh-cCceEEEEeeccCC
Q 036168 265 DRL-NGEIYLLVMDDVWN 281 (846)
Q Consensus 265 ~~l-~~kr~LlVlDdv~~ 281 (846)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 444 34456999998753
No 488
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.30 E-value=0.14 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999974
No 489
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.24 E-value=0.14 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=20.3
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||.+.++-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 490
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.23 E-value=0.25 Score=52.64 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=49.6
Q ss_pred eEEEEecCCCCcHHHHHHHHhcchhhh--------ccCC-eeEEEEecCcc-cHHHHHHHHHHH--hc-----CCCCCCC
Q 036168 192 SVIPIVGLGGLGKTALAKLVYNDQSVQ--------EHFK-LKIWICVSEDF-EQRQIMTKIIKS--IT-----GQNPGDL 254 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~-----~~~~~~~ 254 (846)
.-++|.|.+|+|||+|+..+++..... ++=+ .++++-+.+.. +..++.+++... +. ....+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999888743221 1111 45666666543 445555555432 10 0011122
Q ss_pred CHHHH-----HHHHHHHh---cCceEEEEeecc
Q 036168 255 DTDQL-----RRILRDRL---NGEIYLLVMDDV 279 (846)
Q Consensus 255 ~~~~~-----~~~l~~~l---~~kr~LlVlDdv 279 (846)
...+. .-.+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 22221 12233444 378999999998
No 491
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.22 E-value=0.16 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998753
No 492
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.18 E-value=0.13 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.8
Q ss_pred eeEEEEecCCCCcHHHHHHHHhc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
-.++.|+|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998886
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.16 E-value=0.15 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999874
No 494
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.08 E-value=0.15 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHhc
Q 036168 192 SVIPIVGLGGLGKTALAKLVYN 213 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa~~v~~ 213 (846)
.+++|+|+.|+|||||++.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 495
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.93 E-value=0.33 Score=52.38 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=47.1
Q ss_pred eEEEEecCCCCcHHHHH-HHHhcchhhhccCC-eeEEEEecCccc-HHHHHHHHHHHh--------cCCCCCC----CC-
Q 036168 192 SVIPIVGLGGLGKTALA-KLVYNDQSVQEHFK-LKIWICVSEDFE-QRQIMTKIIKSI--------TGQNPGD----LD- 255 (846)
Q Consensus 192 ~~i~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l--------~~~~~~~----~~- 255 (846)
.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+... ..++.+.+...= ....... .-
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46789999999999996 5777742 234 346676766543 444555443321 0011010 00
Q ss_pred ---HHHHHHHHHHHhcCceEEEEeecc
Q 036168 256 ---TDQLRRILRDRLNGEIYLLVMDDV 279 (846)
Q Consensus 256 ---~~~~~~~l~~~l~~kr~LlVlDdv 279 (846)
.-.+.+.+++ +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122333443 689999999998
No 496
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.86 E-value=0.11 Score=58.78 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=31.6
Q ss_pred CccccchHHHHHHHHHHhcCCCC---C--CcceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 164 SEIIGRDEDREKIIELLMQTNDG---E--SETVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 164 ~~~vGr~~~~~~l~~~L~~~~~~---~--~~~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
+.++|.+...+.+.-.+...... + ......|.++|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 45677777655554444322100 0 000115889999999999999999874
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.81 E-value=0.12 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred ceeEEEEecCCCCcHHHHHHHHhcc
Q 036168 190 TVSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 190 ~~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
....|+|.|..|+||||+|+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999988763
No 498
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.77 E-value=0.67 Score=50.06 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=53.6
Q ss_pred HHHHHhcCCCCCCcceeEEEEecCCCCcHHHHH-HHHhcchhhh----ccCC-eeEEEEecCcc-cHHHHHHHHHHHhc-
Q 036168 176 IIELLMQTNDGESETVSVIPIVGLGGLGKTALA-KLVYNDQSVQ----EHFK-LKIWICVSEDF-EQRQIMTKIIKSIT- 247 (846)
Q Consensus 176 l~~~L~~~~~~~~~~~~~i~I~G~gGiGKTtLa-~~v~~~~~~~----~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~- 247 (846)
.++.+..-..| .-++|.|.+|+|||+|| ..+.+..... ++-+ .++++-+.+.. +..++.+.+...=.
T Consensus 152 aID~l~PigrG-----QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPIGRG-----QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCCBTT-----CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeccccccccC-----CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 45555543222 46789999999999995 4666643210 1234 36677777654 34455555554210
Q ss_pred ------CCCCCCCCHHHH-----HHHHHHHh--cCceEEEEeecc
Q 036168 248 ------GQNPGDLDTDQL-----RRILRDRL--NGEIYLLVMDDV 279 (846)
Q Consensus 248 ------~~~~~~~~~~~~-----~~~l~~~l--~~kr~LlVlDdv 279 (846)
....++....+. .-.+.+++ +++.+||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 001111111111 11223333 589999999998
No 499
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.71 E-value=0.26 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.2
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999863
No 500
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.68 E-value=0.2 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeEEEEecCCCCcHHHHHHHHhcc
Q 036168 191 VSVIPIVGLGGLGKTALAKLVYND 214 (846)
Q Consensus 191 ~~~i~I~G~gGiGKTtLa~~v~~~ 214 (846)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
Done!