Query 036169
Match_columns 619
No_of_seqs 157 out of 1001
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 5E-106 1E-110 936.7 60.1 600 2-617 39-693 (900)
2 KOG1041 Translation initiation 100.0 1.1E-83 2.4E-88 742.9 47.0 560 3-611 52-665 (876)
3 KOG1042 Germ-line stem cell di 100.0 5.7E-79 1.2E-83 643.6 30.0 519 2-610 88-660 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 4.3E-43 9.3E-48 381.7 20.2 231 362-611 1-257 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.6E-41 3.5E-46 372.5 23.4 258 330-611 2-285 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.5E-33 3.3E-38 304.1 18.5 209 375-611 2-229 (393)
7 PF02170 PAZ: PAZ domain; Int 99.9 1.6E-23 3.5E-28 192.8 12.6 130 201-341 1-135 (135)
8 PF02171 Piwi: Piwi domain; I 99.8 3.1E-21 6.6E-26 201.7 7.9 127 463-610 1-133 (302)
9 cd02846 PAZ_argonaute_like PAZ 99.8 2.2E-19 4.8E-24 160.3 12.2 107 201-317 2-114 (114)
10 cd02825 PAZ PAZ domain, named 99.8 1.8E-19 4E-24 160.9 10.8 106 200-317 1-115 (115)
11 cd02845 PAZ_piwi_like PAZ doma 99.8 2.3E-19 4.9E-24 160.0 8.5 106 201-318 2-115 (117)
12 cd04659 Piwi_piwi-like_ProArk 99.5 2.5E-14 5.4E-19 155.5 10.2 95 459-574 109-214 (404)
13 cd02844 PAZ_CAF_like PAZ domai 99.5 4E-14 8.7E-19 129.0 6.2 84 224-318 27-133 (135)
14 PF08699 DUF1785: Domain of un 99.2 2.6E-11 5.7E-16 91.7 4.4 44 157-200 1-52 (52)
15 cd02843 PAZ_dicer_like PAZ dom 98.8 8.2E-09 1.8E-13 91.1 5.3 65 225-302 38-106 (122)
16 COG1431 Argonaute homolog, imp 88.6 2 4.3E-05 47.8 8.8 233 285-563 223-488 (685)
17 PF00763 THF_DHG_CYH: Tetrahyd 54.3 33 0.00072 30.5 5.8 67 448-515 18-85 (117)
18 PRK14185 bifunctional 5,10-met 49.3 56 0.0012 34.1 7.3 67 449-515 20-87 (293)
19 PRK14187 bifunctional 5,10-met 44.2 93 0.002 32.5 8.0 66 450-515 22-88 (294)
20 PRK14184 bifunctional 5,10-met 43.5 91 0.002 32.4 7.8 68 448-515 19-87 (286)
21 PRK14171 bifunctional 5,10-met 43.4 97 0.0021 32.2 8.0 66 450-515 22-88 (288)
22 PRK14186 bifunctional 5,10-met 41.4 99 0.0021 32.3 7.7 66 450-515 22-88 (297)
23 PRK14176 bifunctional 5,10-met 41.0 1.2E+02 0.0026 31.5 8.2 66 450-515 28-94 (287)
24 PRK10792 bifunctional 5,10-met 40.8 94 0.002 32.3 7.4 67 449-515 22-89 (285)
25 PRK14188 bifunctional 5,10-met 40.7 1.1E+02 0.0023 32.1 7.9 66 450-515 22-88 (296)
26 PRK14174 bifunctional 5,10-met 40.3 1E+02 0.0022 32.2 7.7 66 450-515 21-87 (295)
27 PLN02897 tetrahydrofolate dehy 40.1 1E+02 0.0022 32.9 7.6 66 450-515 76-142 (345)
28 PLN02516 methylenetetrahydrofo 39.0 1.2E+02 0.0027 31.7 8.0 66 450-515 29-95 (299)
29 PRK14183 bifunctional 5,10-met 38.6 1.1E+02 0.0025 31.6 7.5 56 460-515 31-87 (281)
30 PRK14180 bifunctional 5,10-met 38.4 1.1E+02 0.0024 31.7 7.5 66 450-515 21-87 (282)
31 PRK14177 bifunctional 5,10-met 38.3 1.2E+02 0.0027 31.4 7.8 66 450-515 23-89 (284)
32 PRK14168 bifunctional 5,10-met 37.6 1.1E+02 0.0024 31.9 7.4 67 449-515 22-89 (297)
33 PLN02616 tetrahydrofolate dehy 37.2 1.3E+02 0.0028 32.4 7.8 66 450-515 93-159 (364)
34 PRK14179 bifunctional 5,10-met 36.5 1.3E+02 0.0029 31.1 7.7 66 450-515 22-88 (284)
35 PRK14169 bifunctional 5,10-met 34.8 1.4E+02 0.0031 30.9 7.6 65 450-515 21-86 (282)
36 PRK14166 bifunctional 5,10-met 34.0 1.4E+02 0.0031 31.0 7.4 57 459-515 29-86 (282)
37 PRK14194 bifunctional 5,10-met 33.8 1.4E+02 0.0031 31.2 7.5 56 460-515 33-89 (301)
38 PRK14191 bifunctional 5,10-met 33.7 1.5E+02 0.0033 30.7 7.6 66 450-515 21-87 (285)
39 PRK14193 bifunctional 5,10-met 33.4 1.5E+02 0.0032 30.8 7.4 56 460-515 32-88 (284)
40 PRK14190 bifunctional 5,10-met 33.3 1.5E+02 0.0032 30.9 7.4 57 459-515 31-88 (284)
41 PRK14172 bifunctional 5,10-met 32.4 1.6E+02 0.0035 30.5 7.5 56 460-515 32-88 (278)
42 PRK14170 bifunctional 5,10-met 28.5 2E+02 0.0042 30.0 7.3 57 459-515 30-87 (284)
43 PRK14192 bifunctional 5,10-met 27.5 2.2E+02 0.0047 29.5 7.6 66 450-515 23-89 (283)
44 PRK14173 bifunctional 5,10-met 27.2 1.5E+02 0.0034 30.8 6.3 56 460-515 29-85 (287)
45 PRK14167 bifunctional 5,10-met 26.2 2.3E+02 0.0049 29.7 7.4 57 459-515 30-87 (297)
46 PRK14181 bifunctional 5,10-met 25.7 1.7E+02 0.0037 30.4 6.4 57 459-515 25-82 (287)
47 PRK14182 bifunctional 5,10-met 25.4 2.3E+02 0.0051 29.4 7.2 56 460-515 30-86 (282)
48 PRK14189 bifunctional 5,10-met 24.3 2.9E+02 0.0062 28.8 7.7 56 460-515 32-88 (285)
49 PF00763 THF_DHG_CYH: Tetrahyd 24.0 3.4E+02 0.0073 24.0 7.2 32 411-442 30-61 (117)
50 PRK14178 bifunctional 5,10-met 23.9 3.1E+02 0.0068 28.4 7.8 57 459-515 25-82 (279)
51 KOG3123 Diphthine synthase [Tr 23.8 1.1E+02 0.0023 30.3 4.1 102 404-509 69-177 (272)
52 PRK14175 bifunctional 5,10-met 23.6 2.6E+02 0.0056 29.1 7.2 56 460-515 32-88 (286)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=4.6e-106 Score=936.65 Aligned_cols=600 Identities=64% Similarity=1.023 Sum_probs=515.2
Q ss_pred CCCCCCeEEEEeeEEEEEecCCCceEEEEc---c-----------ccHHHHHHHHHhccccccCCceeeeCCceeEEccC
Q 036169 2 SGSKGEITSLLSNHFKVSITGASGHIFHYS---G-----------IRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGA 67 (619)
Q Consensus 2 ~Gt~G~~v~L~tN~f~i~~~~~~~~iy~Y~---~-----------~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~ 67 (619)
+||.|++|.|+||||+|.+..++..+|||| . ..+.|++++++++...+.+..+||||+++|||+++
T Consensus 39 ~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~ 118 (900)
T PLN03202 39 FGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGA 118 (900)
T ss_pred CCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeecCccceEECcc
Confidence 599999999999999999865577899999 1 14678888887765556566899999999999999
Q ss_pred CCCCCCceEEecCCCC------CCCCCCCCCCcchhhhh-hccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHH
Q 036169 68 LPHKKNGVPDLSQTTS------NDSPDGHGSNNERDKKR-RRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAF 140 (619)
Q Consensus 68 L~~~~~~~~v~~~~~~------~~~~~~~~~p~~~~~~~-~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~ 140 (619)
|+.+..++.|++..+. .++|.+++.|++++.++ ++..+.+.|+|+|++++++++.+|.+||.|...+.+.+++
T Consensus 119 L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~i 198 (900)
T PLN03202 119 LPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDAL 198 (900)
T ss_pred CCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHH
Confidence 9976667778776421 11121123332322222 2234578999999999999999999999999888889999
Q ss_pred HHHHHHHhhcccccceeccccccccc-------ccc--ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhc
Q 036169 141 RVLDIILRQHAAKQMNLGVSLTLEVV-------FLD--LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQ 211 (619)
Q Consensus 141 q~Lniil~~~~~~~~~~~~gr~f~~~-------~~~--e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~ 211 (619)
|+||+|+|+.++...++.+||+||.+ .++ |+|+||++|||+++++++||+|+++++|+++++|+|+|.++.
T Consensus 199 q~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~ 278 (900)
T PLN03202 199 RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQ 278 (900)
T ss_pred HHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhc
Confidence 99999999999876788889999852 222 999999999999999999999999999999999999999876
Q ss_pred CCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCcccc
Q 036169 212 NVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCF 291 (619)
Q Consensus 212 ~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~ 291 (619)
+.++....++.++.++|+|++|.++|+++.|+|.||++.++++.+|++++++.+| .+++++++||+|||+++||++|+|
T Consensus 279 ~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~-~~~~~~~iSv~dYfk~~Yni~l~~ 357 (900)
T PLN03202 279 NVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNG-NEVETVEITVYDYFVKHRGIELRY 357 (900)
T ss_pred CcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCccc-ccCCcceEEHHHHHHHHcCccccC
Confidence 6544333457789999999999999999999999999999999999876532211 122246899999999999999999
Q ss_pred CC-CccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCee
Q 036169 292 SG-DFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAIS 370 (619)
Q Consensus 292 ~p-~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~ 370 (619)
| ++|||++|+..+++|||||||.|+|||+++.+|++.|+++|+++|+.+|.+|.+.|.++++.++++.+++|++|||+
T Consensus 358 -p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~ 436 (900)
T PLN03202 358 -SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGIS 436 (900)
T ss_pred -CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcE
Confidence 6 99999999988999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ecCceeEEeeEEcCCCeeEe------ccCCCcceecccEeeeccccceEEEEEeCCchhHHHHHHHHHHHHHhcCCcCh-
Q 036169 371 INSRFAKVEGRILSAPRGAY------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTP- 443 (619)
Q Consensus 371 i~~~~~~v~~rvL~~P~i~~------~p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~- 443 (619)
|+++|++|+||+|+||+|.+ .|.+|+|++++.+|++|+++.+|+|+++.++.+++.|++.|.+.|+.+||.+.
T Consensus 437 i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~ 516 (900)
T PLN03202 437 ISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEP 516 (900)
T ss_pred ecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCC
Confidence 99999999999999999995 36789999999999999999999999887666899999999999999999872
Q ss_pred -----------------HhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccccCCHHHHH
Q 036169 444 -----------------VRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLM 506 (619)
Q Consensus 444 -----------------~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k~~~q~~~ 506 (619)
++++++++++++.....++|+|||||++++.++|+.||++||.++||+||||...+.++||++
T Consensus 517 p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~ 596 (900)
T PLN03202 517 PFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLT 596 (900)
T ss_pred CccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHH
Confidence 246788888888776679999999997346889999999999999999999977778999999
Q ss_pred HHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccc
Q 036169 507 NVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILS 586 (619)
Q Consensus 507 NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~ 586 (619)
|||||||+| |||+||.++.+....+|++.+.+|||||+||+||+||....||||||| ||+|++.++
T Consensus 597 NIalKiN~K-----------LGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~V---aS~d~~~~~ 662 (900)
T PLN03202 597 NVLLKINAK-----------LGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVV---SSRQWPLIS 662 (900)
T ss_pred HHHHHHhhh-----------hCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEE---eccCccccc
Confidence 999999999 999999987654455788877899999999999999865579999999 999976799
Q ss_pred eeeeEEEecCCccccccccCCCCCCCCCCCc
Q 036169 587 RYRASVRSQSAKLEMTDSLFKPLPNKDDAAI 617 (619)
Q Consensus 587 ~y~~~~~~Q~~~~Eii~~l~~~~~~~~~~~~ 617 (619)
+|++.+++|.+++|+|++|+.++.+....+|
T Consensus 663 ~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m 693 (900)
T PLN03202 663 RYRASVRTQSPKVEMIDSLFKPVGDKDDDGI 693 (900)
T ss_pred ceeeEEEecCCCceeeeehhccccccchHHH
Confidence 9999999999999999999776655444444
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-83 Score=742.88 Aligned_cols=560 Identities=32% Similarity=0.488 Sum_probs=478.2
Q ss_pred CCCCCeEEEEeeEEEEEecCCCce-EEEEc-----c-----cc-HHHHHHHHHhcc-ccccCCceeeeCCceeEEccCCC
Q 036169 3 GSKGEITSLLSNHFKVSITGASGH-IFHYS-----G-----IR-RKIIDKVCETNS-ADLAEKDIAYDGEKSLFTIGALP 69 (619)
Q Consensus 3 Gt~G~~v~L~tN~f~i~~~~~~~~-iy~Y~-----~-----~~-r~i~~~l~~~~~-~~~~~~~~~yDG~~~lys~~~L~ 69 (619)
|+.|+.+.|.+|||.++++.++.. +|||+ . .+ +.+++....... ..+.+..++|||+++|||...++
T Consensus 52 ~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~lyt~~~~~ 131 (876)
T KOG1041|consen 52 GTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKTLYTKLELP 131 (876)
T ss_pred CccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCceeEeccccc
Confidence 688999999999999988755555 89999 1 22 234444444332 23556667799999999977777
Q ss_pred CCC--CceEEecCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHH
Q 036169 70 HKK--NGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIIL 147 (619)
Q Consensus 70 ~~~--~~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil 147 (619)
... .++.+..+.+ ...++++|+++.++.+..+..++.+.....+++++|+|++++
T Consensus 132 ~~~~~~~~~~~~~~~-----------------------~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~ 188 (876)
T KOG1041|consen 132 EGVVTLDFDVISPKE-----------------------WKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVL 188 (876)
T ss_pred cccceEEEEecCCCC-----------------------CcceEEEEEecccccccCccccccCccccCchhHHHHHHHHH
Confidence 422 2334433321 112999999999999988888888887788999999999999
Q ss_pred hhcccccceeccccccccc-------cc-c-ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCCCC-c-
Q 036169 148 RQHAAKQMNLGVSLTLEVV-------FL-D-LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHD-C- 216 (619)
Q Consensus 148 ~~~~~~~~~~~~gr~f~~~-------~~-~-e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~-~- 216 (619)
++.+....+..+|++||.. ++ + |+|.||++|+|+.+++++||+|+++++|+++.+|.+++.++...++ .
T Consensus 189 ~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~ 268 (876)
T KOG1041|consen 189 REIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAF 268 (876)
T ss_pred HhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCccccc
Confidence 9999977789999998763 12 2 9999999999999999999999999999999999999999876542 1
Q ss_pred hhhhHHHHHHHhcCcEEEEeec--CceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCC
Q 036169 217 YQLHWAKAKRTLKNLRIRVHPF--NREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGD 294 (619)
Q Consensus 217 ~~~~~~~l~~~Lkgl~V~~~~~--~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~ 294 (619)
.+.....+++.|+||+|.++|+ +|.|+|.+++..+|.+.+|++++.+ +.++||+|||+++||++|+| |+
T Consensus 269 ~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~--------~~~~tV~~Yf~~ky~~~Lky-p~ 339 (876)
T KOG1041|consen 269 HKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK--------GREITVADYFLEKYNITLKY-PD 339 (876)
T ss_pred ccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC--------ceEEeHHHHHHHhcCccccC-CC
Confidence 1111233899999999999994 4889999999999999999987632 48999999999999999999 99
Q ss_pred ccEEEeCCCCCCcccccccEEEcCCCcccC-cCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCeeecC
Q 036169 295 FPCIDVGKPRKPTYIPIEPCSLLSLQRYTK-ALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINS 373 (619)
Q Consensus 295 lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~-~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~ 373 (619)
+|||++|..++..|+|||||.|++|||+.+ +|++.|+++|++.++..|++|.+.|..+++..++..+++|++|||.|.+
T Consensus 340 LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~ 419 (876)
T KOG1041|consen 340 LPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLKEFGIIVVS 419 (876)
T ss_pred CccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHHhcCeEEec
Confidence 999999999999999999999999999987 9999999999999999999999999999999988889999999999999
Q ss_pred ceeEEeeEEcCCCeeEe-------ccCCCcceecccEeeeccccceEEEEEeCCchhH--HHHHHHHHHHHHhcCCcCh-
Q 036169 374 RFAKVEGRILSAPRGAY-------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDI--RSLCRDLIRFGEMKGIVTP- 443 (619)
Q Consensus 374 ~~~~v~~rvL~~P~i~~-------~p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~~~~--~~f~~~l~~~~~~~G~~i~- 443 (619)
+|+.|+||+|+||.|.+ .|..|.|++++++|+.|+.+..|+|++|....+. +.|++.|++.|+..||.|.
T Consensus 420 ~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~~~f~~~L~~~c~~~Gm~i~~ 499 (876)
T KOG1041|consen 420 EPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQKQFVDELIKICKDKGMEIKR 499 (876)
T ss_pred ccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccccHHHHHHHHHHHHHHcCccccc
Confidence 99999999999999994 3468999999999999999999999999876422 6899999999999999996
Q ss_pred --------HhHHHHHHHHHHhcc--CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHHHHHHHHH
Q 036169 444 --------VRADRMFVQMKQKFE--KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEHDLMNVLL 510 (619)
Q Consensus 444 --------~~~~~~~~~l~~~~~--~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q~~~NI~l 510 (619)
..++.+++.+....+ .++++++||+|+ +..++|+.+|++++...||+|||+... |..+||++||+|
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~l 578 (876)
T KOG1041|consen 500 PRKWAPTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLIL 578 (876)
T ss_pred ccccCcccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHH
Confidence 467777777666543 569999999998 888999999999999999999999984 567999999999
Q ss_pred HHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCC--CCeEEEEEecccccCCCcccee
Q 036169 511 KINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSN--VPSVATVGCNSFSRNWPILSRY 588 (619)
Q Consensus 511 KiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~--~pSva~~v~n~~S~d~~~~~~y 588 (619)
|||+| |||+|+.|..+.+...| ....+|||||+||+||++|+.. .||||||| ||+|| +.++|
T Consensus 579 KiN~K-----------lGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv---~s~~~-~~~~y 642 (876)
T KOG1041|consen 579 KINVK-----------LGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVV---YNLDW-HPQKF 642 (876)
T ss_pred HHhhc-----------cCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEE---ecccc-cchhh
Confidence 99999 99999998865433344 3468999999999999999764 59999999 99998 99999
Q ss_pred eeEEEecCCccccccccCCCCCC
Q 036169 589 RASVRSQSAKLEMTDSLFKPLPN 611 (619)
Q Consensus 589 ~~~~~~Q~~~~Eii~~l~~~~~~ 611 (619)
.+.+++|++|+|+|+++.+|++.
T Consensus 643 ~g~~~~Q~~r~e~i~~~~~~~~~ 665 (876)
T KOG1041|consen 643 AGFVRFQKSRQEVIQDLGEMIRE 665 (876)
T ss_pred cceEEEecCChhhhcchHHHHHH
Confidence 99999999999999996666543
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.7e-79 Score=643.57 Aligned_cols=519 Identities=20% Similarity=0.278 Sum_probs=451.7
Q ss_pred CCCCCCeEEEEeeEEEEEecCCCceEEEEc------cccHHHHHHHHHhccccccCCceeeeCCceeEEccCCCCCCCce
Q 036169 2 SGSKGEITSLLSNHFKVSITGASGHIFHYS------GIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGV 75 (619)
Q Consensus 2 ~Gt~G~~v~L~tN~f~i~~~~~~~~iy~Y~------~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~ 75 (619)
.|+.|.+|+|.||||++... |++.||||| -.+|++..+++.++...+ |..++||| ..||++++++.+-.+
T Consensus 88 tGssG~pv~l~tN~f~l~t~-p~w~iyqYhVef~P~ves~rlR~~~L~~h~~li-g~~~~FDG-~iLfl~~k~eq~~te- 163 (845)
T KOG1042|consen 88 TGSSGIPVKLQTNFFRLMTR-PDWSIYQYHVEFEPDVESRRLREALLYNHTDLI-GKGYAFDG-TILFLKEKFEQKQTE- 163 (845)
T ss_pred cCCCCceEEEEeceeeeccC-CCcEEEEEEEeeccccccHHHHHHHHHHhHhhh-ccceeecc-eeehhhHHHhhhhhe-
Confidence 59999999999999998865 799999999 357899999999876655 68999999 599999999864221
Q ss_pred EEecCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhcccccc
Q 036169 76 PDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQM 155 (619)
Q Consensus 76 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~~~~~~ 155 (619)
.+ .. ......++|+|++++++... +..++|++|+|+|..+...+
T Consensus 164 l~--~k---------------------s~~ge~i~I~ik~~~~~~~t-------------~p~~iqv~NlI~RR~~k~L~ 207 (845)
T KOG1042|consen 164 LV--SK---------------------SRDGELIKITIKLTNELPST-------------DPQCIQVFNLILRRSMKGLN 207 (845)
T ss_pred ee--cc---------------------cCCCceEEEEEEEeccccCC-------------ChhHHHHHHHHHHHHHhhcc
Confidence 11 11 13578999999999998754 47899999999999998888
Q ss_pred eecccccccccc-----cc---ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCCCCchhhhHHHHHHH
Q 036169 156 NLGVSLTLEVVF-----LD---LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRT 227 (619)
Q Consensus 156 ~~~~gr~f~~~~-----~~---e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~~~~~~~~l~~~ 227 (619)
+.++||+||+|- .+ ++||||.+|||..+..++|+.|++||+.+ ..+++|+|..+.+. +. .....+++.
T Consensus 208 L~qigRnyynp~~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR-~ETvy~~m~~~~~~--~~-~~qe~~~~~ 283 (845)
T KOG1042|consen 208 LTQIGRNYYDPRAKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMR-TETVYDIMRSCQHN--TQ-RFQETVNKN 283 (845)
T ss_pred HHHhhhccCCCCcccccccccceecCcchhHHHHhhhceeeehhhhhhHhh-hhHHHHHHHHHhhC--HH-HHHHHHHHH
Confidence 999999999863 23 99999999999999999999999999887 58999999998753 22 245789999
Q ss_pred hcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeCCCC---
Q 036169 228 LKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPR--- 304 (619)
Q Consensus 228 Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~--- 304 (619)
+.|+.|.+.|+||+|+|++|+|+..+.++|..++ ++||+.|||+++|||.|++ -+||+|....++
T Consensus 284 ~~glivLT~YNNktyriddvD~~~tP~stF~k~d-----------geIs~veYyk~qYni~I~d-l~QPlliS~~k~K~~ 351 (845)
T KOG1042|consen 284 VIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD-----------GEISFVEYYKKQYNIEITD-LNQPLLISEPKDKRP 351 (845)
T ss_pred hcceEEEEecCCceeeeeccccCcCccceeeecC-----------ceeeHhHHHHHhcCeEEee-CCcceEeccCcccCC
Confidence 9999999999999999999999999999998765 5999999999999999998 999999875432
Q ss_pred -----CCcccccccEEEcCCCcccCcCCHHHHH------HHHHHhcCChHHHHHHHHHHHHhcCCCC--cchhcccCeee
Q 036169 305 -----KPTYIPIEPCSLLSLQRYTKALTVFQRS------ALVEKSQQKPQEKMKIITDVMRSNKYDS--EPMLRSCAISI 371 (619)
Q Consensus 305 -----k~~y~P~Elc~i~~~Q~~~~~l~~~~~~------~mi~~~~~~P~~R~~~i~~~~~~l~~~~--~~~l~~~Gi~i 371 (619)
..+++.||||++++ |++++++ +|.++++..|++|..++..+...+.-+. -+.|+.|||++
T Consensus 352 ~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~l 424 (845)
T KOG1042|consen 352 KGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELRDWGISL 424 (845)
T ss_pred CCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHhcCccc
Confidence 35899999999997 8888775 5899999999999999999999986654 35899999999
Q ss_pred cCceeEEeeEEcCCCeeEe-------ccCCCcce--ecccEeeeccccceEEEEEeCCc-hhHHHHHHHHHHHHHhcCCc
Q 036169 372 NSRFAKVEGRILSAPRGAY-------HPKNGRWS--FHNKIFVQAAKIDHWAVVNFSAR-YDIRSLCRDLIRFGEMKGIV 441 (619)
Q Consensus 372 ~~~~~~v~~rvL~~P~i~~-------~p~~g~W~--~~~~kf~~~a~i~~w~vv~~~~~-~~~~~f~~~l~~~~~~~G~~ 441 (619)
++..++|+||+|++..|.. .++.++|. ++...++....+++|+|++.++. ..+++|+++|.+.+..+||.
T Consensus 425 d~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~fi~~l~r~a~~mgm~ 504 (845)
T KOG1042|consen 425 DSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQEFINMLRRVASSMGMQ 504 (845)
T ss_pred CcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHHHHHHHHHhcccccee
Confidence 9999999999999999993 34568898 56667788889999999998866 47999999999999999999
Q ss_pred C---------hHhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-C----CHHHHHH
Q 036169 442 T---------PVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-V----NEHDLMN 507 (619)
Q Consensus 442 i---------~~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~----~~q~~~N 507 (619)
+ +++.+.+++.+.+.....+++|+||+|+ .+.+.|++||++++.+.+||||||+.+. . --+++..
T Consensus 505 i~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtK 583 (845)
T KOG1042|consen 505 IREPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATK 583 (845)
T ss_pred cCCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHH
Confidence 8 2457889999998888889999999998 8889999999999999999999999853 1 2457899
Q ss_pred HHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccce
Q 036169 508 VLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSR 587 (619)
Q Consensus 508 I~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~ 587 (619)
|+|||||| |||..|.|+ ||+ +.+||||+||+|.+.. ...|++|+| ||+| +.+++
T Consensus 584 I~lQmnCK-----------lGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~V---As~n-~~~tr 637 (845)
T KOG1042|consen 584 IALQMNCK-----------LGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFV---ASMN-NDFTR 637 (845)
T ss_pred HHHHHhhh-----------hcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEE---Eeec-cchhh
Confidence 99999999 999999997 675 7899999999998654 578999999 9999 79999
Q ss_pred eeeEEEecCCccccccccCCCCC
Q 036169 588 YRASVRSQSAKLEMTDSLFKPLP 610 (619)
Q Consensus 588 y~~~~~~Q~~~~Eii~~l~~~~~ 610 (619)
|+|.+..|...+|+.+.|..++.
T Consensus 638 ~fS~v~~~~~~qel~d~L~~~~~ 660 (845)
T KOG1042|consen 638 WFSRVIEQENGQELADNLKVFLA 660 (845)
T ss_pred hhhheecccCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.3e-43 Score=381.67 Aligned_cols=231 Identities=39% Similarity=0.641 Sum_probs=204.6
Q ss_pred chhcccCeeecCceeEEeeEEcCCCeeEec-------cCCCcceecccEeeeccccceEEEEEeCCc-------hhHHHH
Q 036169 362 PMLRSCAISINSRFAKVEGRILSAPRGAYH-------PKNGRWSFHNKIFVQAAKIDHWAVVNFSAR-------YDIRSL 427 (619)
Q Consensus 362 ~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~~-------p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~-------~~~~~f 427 (619)
++|++|||+|+++|++|+||+|+||.|.+. |.+|+|++++.+|++++.+++|+||++..+ .+++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 468999999999999999999999999963 468999999999999999999999999753 268999
Q ss_pred HHHHHHHHHhcCCcC-------hHhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-
Q 036169 428 CRDLIRFGEMKGIVT-------PVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK- 499 (619)
Q Consensus 428 ~~~l~~~~~~~G~~i-------~~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k- 499 (619)
++.|.+.|+.+||.+ +++++.+++.+++.....++||+||||+ ++.++|+.||++||.+.||+||||..++
T Consensus 81 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~gI~TQci~~~~~ 159 (426)
T cd04657 81 VDQLVKTVIGAGINITTAIASVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELGIHTQCVLAKKV 159 (426)
T ss_pred HHHHHHHHHhcCCcccccccccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCCcccEEEccccc
Confidence 999999999999977 2457778888887765579999999998 7789999999999999999999999853
Q ss_pred ---CCHHHHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCC-CCCCeEEEEEe
Q 036169 500 ---VNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGH-SNVPSVATVGC 575 (619)
Q Consensus 500 ---~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~-~~~pSva~~v~ 575 (619)
.++|++.||+||||+| |||+||.|++.. .+++...+|||||+||+||++++ ...|||||||
T Consensus 160 ~k~~~~~~~~NI~lKin~K-----------lGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~V- 224 (426)
T cd04657 160 TKKGNPQYFANVALKINLK-----------LGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVV- 224 (426)
T ss_pred ccccchHHHHHHHHHHHHh-----------cCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEE-
Confidence 6899999999999999 999999998542 23445689999999999999885 4689999999
Q ss_pred cccccCCCccceeeeEEEecCCccccccccCCCCCC
Q 036169 576 NSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPN 611 (619)
Q Consensus 576 n~~S~d~~~~~~y~~~~~~Q~~~~Eii~~l~~~~~~ 611 (619)
||+| +.+++|.+.+++|++++|+|++|++|+..
T Consensus 225 --as~d-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~ 257 (426)
T cd04657 225 --ASVD-WHLAQYPASVRLQSHRQEIIDDLESMVRE 257 (426)
T ss_pred --EecC-CcccccceEEEEeCCCcchHHHHHHHHHH
Confidence 9999 69999999999999999999999888754
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.6e-41 Score=372.54 Aligned_cols=258 Identities=23% Similarity=0.326 Sum_probs=225.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc--chhcccCeeecCceeEEeeEEcCCCeeEec------cCCCcceec-
Q 036169 330 QRSALVEKSQQKPQEKMKIITDVMRSNKYDSE--PMLRSCAISINSRFAKVEGRILSAPRGAYH------PKNGRWSFH- 400 (619)
Q Consensus 330 ~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~--~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~~------p~~g~W~~~- 400 (619)
.+.+|+++++.+|.+|++.|.++++.+..+.+ ++|++|||+|+++|++|+||+|+||.|.+. +.+|+|++.
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~ 81 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREI 81 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhh
Confidence 36789999999999999999999999877655 589999999999999999999999999963 467889864
Q ss_pred -ccEeeeccccceEEEEEeCCc-hhHHHHHHHHHHHHHhcCCcCh---------HhHHHHHHHHHHhccCCCeEEEEEcC
Q 036169 401 -NKIFVQAAKIDHWAVVNFSAR-YDIRSLCRDLIRFGEMKGIVTP---------VRADRMFVQMKQKFEKCPCFLLCLLP 469 (619)
Q Consensus 401 -~~kf~~~a~i~~w~vv~~~~~-~~~~~f~~~l~~~~~~~G~~i~---------~~~~~~~~~l~~~~~~~~~lv~~ilp 469 (619)
+..|+.++.+.+|+++++..+ ..++.|++.|.+.++++||.+. ++.+++++.+++....+++|++||+|
T Consensus 82 ~~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~lvvvilp 161 (448)
T cd04658 82 RNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFRSDPQLVVIILP 161 (448)
T ss_pred cCCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhcCCCcEEEEEEC
Confidence 456888999999999998744 4799999999999999999982 24677888888776667999999999
Q ss_pred CCCCchhHHHHhhhhccccCceeeEecccc-----CCHHHHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCC
Q 036169 470 DKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-----VNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPL 544 (619)
Q Consensus 470 ~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-----~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~ 544 (619)
+ ++.++|+.||++|+.+.||+||||..++ ...++++||+||||+| |||+||.++.. .
T Consensus 162 ~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaK-----------lGG~~w~l~~~------~ 223 (448)
T cd04658 162 G-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAK-----------LGGIPWTVEIP------P 223 (448)
T ss_pred C-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHH-----------hCCcceEeccC------C
Confidence 8 6679999999999999999999999842 3567899999999999 99999999742 1
Q ss_pred ccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccceeeeEEEecCCcccc-ccccCCCCCC
Q 036169 545 VSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEM-TDSLFKPLPN 611 (619)
Q Consensus 545 l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~~~~Ei-i~~l~~~~~~ 611 (619)
....+|||||+||+||+++ ..||+||+| ||+| +++++|++.++.|..++|+ +++|.+|+..
T Consensus 224 ~~~~~tmiiGidv~h~~~~--~~~Si~a~v---as~~-~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~ 285 (448)
T cd04658 224 FILKNTMIVGIDVYHDTIT--KKKSVVGFV---ASLN-KSITKWFSKYISQVRGQEEIIDSLGKSMKK 285 (448)
T ss_pred CCCCCeEEEEEeeecCCCC--CCCcEEEEE---EEcC-CCCceEeeEEEEeCCCceeeHHHHHHHHHH
Confidence 3357899999999999875 579999999 9999 6999999999999999998 9999887653
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.5e-33 Score=304.12 Aligned_cols=209 Identities=21% Similarity=0.238 Sum_probs=174.5
Q ss_pred eeEEeeEEcCCCeeEeccCCCcceecccEeeecccc-ceEEEEEeCCchhHHHHHHHHHHHHHhcCCcChH---------
Q 036169 375 FAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKI-DHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPV--------- 444 (619)
Q Consensus 375 ~~~v~~rvL~~P~i~~~p~~g~W~~~~~kf~~~a~i-~~w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~--------- 444 (619)
+++|+||+||||.|.+... |++++.+|..|+.+ .+|+|+++.+. ..++|++.|.+.++++||.+.+
T Consensus 2 ~~~v~grvL~~p~i~~~~~---w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~ 77 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPIVSWIED 77 (393)
T ss_pred ceEEeeEecCCCceEecCC---ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCCcceeec
Confidence 6899999999999997433 99999999999998 99999998754 4669999999999999998732
Q ss_pred ---hHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-----cCCHHHHHHHHHHHHhcC
Q 036169 445 ---RADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-----KVNEHDLMNVLLKINANC 516 (619)
Q Consensus 445 ---~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-----k~~~q~~~NI~lKiN~K~ 516 (619)
+.+++.+.+++....+++|++||+|+ ++.+.|+.||++++.. ||+|||++.+ +..+++++||+||||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~K- 154 (393)
T cd02826 78 LNNSFKDLKSVFKNAIKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSK- 154 (393)
T ss_pred ccccHHHHHHHHHHHhhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHHHHHHHHHHHhhh-
Confidence 23345555555544579999999998 7789999999999887 9999999874 36789999999999999
Q ss_pred cccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCC-CCCCCeEEEEEecccccCCCccceeeeEEEec
Q 036169 517 QRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPG-HSNVPSVATVGCNSFSRNWPILSRYRASVRSQ 595 (619)
Q Consensus 517 ~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g-~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q 595 (619)
|||+||.|+.. .+...+|||||+||+||+++ ....||++||| ||+| .. +.|.+.++.|
T Consensus 155 ----------lGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~v---as~~-~~-~~~g~~~~~~ 213 (393)
T cd02826 155 ----------LGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFA---ANLS-NH-TFLGGFLYVQ 213 (393)
T ss_pred ----------hCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEE---eecC-Cc-cccceEEEEe
Confidence 99999999742 12347899999999999986 33589999999 9999 35 4555678889
Q ss_pred CCccccccccCCCCCC
Q 036169 596 SAKLEMTDSLFKPLPN 611 (619)
Q Consensus 596 ~~~~Eii~~l~~~~~~ 611 (619)
..++|++++|.+|++.
T Consensus 214 ~~~~~~~~~l~~~~~~ 229 (393)
T cd02826 214 PSREVKLQDLGEVIKK 229 (393)
T ss_pred cCccchHHHHHHHHHH
Confidence 9999999999887754
No 7
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.90 E-value=1.6e-23 Score=192.78 Aligned_cols=130 Identities=30% Similarity=0.469 Sum_probs=109.8
Q ss_pred CcHHHHHHHhcCCCCchhh-hHHHHHHHhcCcEEEEeecC--ceEEEeccCccCcccceeeccCCCCCCCCCccceEEeH
Q 036169 201 GPLVDFLIANQNVHDCYQL-HWAKAKRTLKNLRIRVHPFN--REYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTV 277 (619)
Q Consensus 201 ~~l~d~i~~~~~~~~~~~~-~~~~l~~~Lkgl~V~~~~~~--r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv 277 (619)
++++|+|.++.+.+..... ...++++.|+|++|.++|++ |.|+|.+|++..+++++|+.++ ++.+||
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~----------g~~itv 70 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND----------GKEITV 70 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT----------SEEEEH
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC----------CceEEh
Confidence 4789999998876654322 23459999999999999999 9999999999999999998773 289999
Q ss_pred HHHHHHhcCCccccCCCccEEEeCCCCC--CcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCC
Q 036169 278 FDYFVNHGRINLCFSGDFPCIDVGKPRK--PTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQK 341 (619)
Q Consensus 278 ~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k--~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~ 341 (619)
+|||+++||++|+| |+||||.++...+ .+|+|||||.|+++|++..++.+.+.+.|++.+|.+
T Consensus 71 ~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 71 AEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred HHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 99999999999999 9999999998777 999999999999999999999999999999999864
No 8
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.84 E-value=3.1e-21 Score=201.74 Aligned_cols=127 Identities=39% Similarity=0.535 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cC--CHHHHHHHHHHHHhcCcccccCccccCCCcc-ccccc
Q 036169 463 FLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KV--NEHDLMNVLLKINANCQRELTDPLILLGGLN-SLLAI 536 (619)
Q Consensus 463 lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~--~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n-~~l~~ 536 (619)
+|+||+|+ ++.+.|..+|++++.++||+|||+..+ +. ..+++.||+||||+| |||.| |.++.
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaK-----------lGG~n~~~~~~ 68 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAK-----------LGGINPWLLDS 68 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHH-----------TTTBSEEECSC
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHh-----------CCCeeeeeccc
Confidence 58999998 788999999999999999999999984 33 368999999999999 99995 55553
Q ss_pred cccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccceeeeEEEecCCccccccccCCCCC
Q 036169 537 EQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLP 610 (619)
Q Consensus 537 ~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~~~~Eii~~l~~~~~ 610 (619)
.. ..++ .+|||||+||+|++++....||++|+| +|+| +..++|.+.++.|..++|++++|++++.
T Consensus 69 ~~--~~~~---~~~miIGidv~h~~~~~~~~~sv~g~~---~s~~-~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 133 (302)
T PF02171_consen 69 PP--SIDL---KNTMIIGIDVSHPSPGSDKNPSVVGFV---ASFD-SDGSKYFSSVRFQDSGQEIIDNLEEIIK 133 (302)
T ss_dssp SS--GSSE---SEEEEEEEEEEEESSTCTCSCEEEEEE---EEES-TTTCEEEEEEEEECTTCCCHHHHHHHHH
T ss_pred cc--cccc---CceEEEEEEEEecCcccCCcceeeEEE---Eecc-CccccccceeEEeccchhhhcchhhHHH
Confidence 21 1111 689999999999998754589999999 9999 7999999999999999999999877654
No 9
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.81 E-value=2.2e-19 Score=160.32 Aligned_cols=107 Identities=34% Similarity=0.655 Sum_probs=93.7
Q ss_pred CcHHHHHHHhcCCCCc---hhhhHHHHHHHhcCcEEEEeec---CceEEEeccCccCcccceeeccCCCCCCCCCccceE
Q 036169 201 GPLVDFLIANQNVHDC---YQLHWAKAKRTLKNLRIRVHPF---NREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVD 274 (619)
Q Consensus 201 ~~l~d~i~~~~~~~~~---~~~~~~~l~~~Lkgl~V~~~~~---~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~ 274 (619)
++|+|++.++++.+.. .+.++.++++.|+|++|.++|+ +|.|+|.||++.++.+.+|+.+++ ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~---------~~~ 72 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDG---------EKE 72 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCC---------CcE
Confidence 6899999998866432 2346788999999999999998 699999999999998999987641 158
Q ss_pred EeHHHHHHHhcCCccccCCCccEEEeCCCCCCcccccccEEEc
Q 036169 275 VTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLL 317 (619)
Q Consensus 275 itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~ 317 (619)
+||+|||+++||++|+| |+||||++|+..+++|+|||||.|+
T Consensus 73 isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 73 ISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 99999999999999999 9999999999889999999999984
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.80 E-value=1.8e-19 Score=160.90 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=91.3
Q ss_pred CCcHHHHHHHhcCCCCc----hhhhHHHHHHHhcCcEEEEeec--CceEEEeccCccCcccceeeccCCCCCCCCCccce
Q 036169 200 PGPLVDFLIANQNVHDC----YQLHWAKAKRTLKNLRIRVHPF--NREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCV 273 (619)
Q Consensus 200 ~~~l~d~i~~~~~~~~~----~~~~~~~l~~~Lkgl~V~~~~~--~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~ 273 (619)
+++|+|++.++++.++. .+.++.++.+.|+|++|.++|+ +|.|+|.+|++.+|++. |+..+ +.
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~----------~~ 69 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD----------GK 69 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC----------CC
Confidence 36899999998765432 2346788999999999999998 79999999999999887 75433 26
Q ss_pred EEeHHHHHHHhcCCccccCCCccEEEeCCC---CCCcccccccEEEc
Q 036169 274 DVTVFDYFVNHGRINLCFSGDFPCIDVGKP---RKPTYIPIEPCSLL 317 (619)
Q Consensus 274 ~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~---~k~~y~P~Elc~i~ 317 (619)
.+||+|||+++||++|+| |+||||++|+. .+.+|+|||||.|+
T Consensus 70 ~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 70 EITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 899999999999999999 99999999987 67899999999984
No 11
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.79 E-value=2.3e-19 Score=159.99 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=90.1
Q ss_pred CcHHHHHHHhcCCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHH
Q 036169 201 GPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDY 280 (619)
Q Consensus 201 ~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Y 280 (619)
.+++|++.++++.... ...+.++.+.|+|++|.+.|+++.|+|.+|++++++.++|+.++ +..+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~----------~~~~S~~~Y 70 (117)
T cd02845 2 TTVLDRMHKLYRQETD-ERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSD----------GTEITFVEY 70 (117)
T ss_pred eeHHHHHHHHHHhccc-HHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCC----------CCeeeHHHH
Confidence 4688888887654321 12567899999999999999999999999999999999997543 258899999
Q ss_pred HHHhcCCccccCCCccEEEeCCCC--------CCcccccccEEEcC
Q 036169 281 FVNHGRINLCFSGDFPCIDVGKPR--------KPTYIPIEPCSLLS 318 (619)
Q Consensus 281 f~~~Y~i~L~~~p~lPlv~~~~~~--------k~~y~P~Elc~i~~ 318 (619)
|+++||+.|+| |+||||.++.++ +.+|||||||.+++
T Consensus 71 y~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 71 YKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred HHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 99999999999 999999998643 47999999999986
No 12
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.52 E-value=2.5e-14 Score=155.53 Aligned_cols=95 Identities=24% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCC------chhHHHHhhhhccccCceeeEeccc---c--CCHHHHHHHHHHHHhcCcccccCccccC
Q 036169 459 KCPCFLLCLLPDKKD------SDLYGSWKRKTLSEFGIFNQCLAPT---K--VNEHDLMNVLLKINANCQRELTDPLILL 527 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~------~~~Y~~iK~~~~~~~gV~TQcv~~~---k--~~~q~~~NI~lKiN~K~~~~~~~~~~~l 527 (619)
..++++||++|+ +. .++|+.||+++ ...||+||||..+ + ...+++.||++|||+| +
T Consensus 109 ~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aK-----------l 175 (404)
T cd04659 109 QGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAK-----------L 175 (404)
T ss_pred CCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHh-----------c
Confidence 468999999998 53 78999999987 5899999999874 2 3567899999999999 9
Q ss_pred CCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEE
Q 036169 528 GGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVG 574 (619)
Q Consensus 528 GG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v 574 (619)
||+||.|+. + ...+|||||+||+|++.+....+|+|.++
T Consensus 176 GG~pW~l~~------~--~~~~~~iIGidv~~~~~~~~~~~~~a~vf 214 (404)
T cd04659 176 GGIPWKLDA------D--SDPADLYIGIGFARSRDGEVRVTGCAQVF 214 (404)
T ss_pred CCCceEccc------C--CCCCeEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 999999973 1 23789999999999986632345655554
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.48 E-value=4e-14 Score=129.04 Aligned_cols=84 Identities=24% Similarity=0.256 Sum_probs=71.0
Q ss_pred HHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeCC-
Q 036169 224 AKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGK- 302 (619)
Q Consensus 224 l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~- 302 (619)
..+.|+|++|.+.|++|.|+|.+|+ +.+++++|+.+++ ++.+||+|||+++||+.|+| |+||||.++.
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~---------~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~~ 95 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEG---------LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQI 95 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCC---------CceeeHHHHHHHHhCceecc-CCcceEEEecc
Confidence 4678999999999999999999999 9999999976541 14689999999999999999 9999998751
Q ss_pred ----------------------CCCCcccccccEEEcC
Q 036169 303 ----------------------PRKPTYIPIEPCSLLS 318 (619)
Q Consensus 303 ----------------------~~k~~y~P~Elc~i~~ 318 (619)
....+++|||||.+.+
T Consensus 96 ~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 96 FNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccceecccccccccccccccccceEEEeChHHhcccc
Confidence 0114799999999864
No 14
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.17 E-value=2.6e-11 Score=91.70 Aligned_cols=44 Identities=36% Similarity=0.430 Sum_probs=36.5
Q ss_pred eccccccccc------ccc--ceeeeeeEEEEEecCeeeEeeecceeeeecC
Q 036169 157 LGVSLTLEVV------FLD--LGCWGFHSSFQATQGGLSLNIDGSTTSIIKP 200 (619)
Q Consensus 157 ~~~gr~f~~~------~~~--e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~ 200 (619)
+++||+||.+ +++ |+|+|||+||||+.++|+||||+++++|+++
T Consensus 1 ~~vgrsFF~~~~~~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGPVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCCccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 3679999853 233 9999999999999999999999999999974
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.77 E-value=8.2e-09 Score=91.07 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHhcCcEEEEeecC----ceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEe
Q 036169 225 KRTLKNLRIRVHPFN----REYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDV 300 (619)
Q Consensus 225 ~~~Lkgl~V~~~~~~----r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~ 300 (619)
.+.+.|..|.+.|+| +.|+|.+|.++..+.++|+.+ +.+|++|||+++|||.|++ ++||||.+
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v 104 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP------------EYETFEEYYKKKYKLDIQN-LNQPLLDV 104 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC------------CCccHHHHHHHhcCeEecc-CCCCcEee
Confidence 467899999999998 899999999999999999633 3699999999999999998 99999999
Q ss_pred CC
Q 036169 301 GK 302 (619)
Q Consensus 301 ~~ 302 (619)
+.
T Consensus 105 ~~ 106 (122)
T cd02843 105 DH 106 (122)
T ss_pred cC
Confidence 74
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=88.59 E-value=2 Score=47.80 Aligned_cols=233 Identities=15% Similarity=0.046 Sum_probs=122.6
Q ss_pred cCCccccCCCccEEEeCCCCCCcccccccEEEcCC-CcccC--cCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 036169 285 GRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSL-QRYTK--ALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSE 361 (619)
Q Consensus 285 Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~~~-Q~~~~--~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~ 361 (619)
|.-.+ ++++|+-.|+. --..||..+|..++. -++.. .+....+-+.-..-... .+...|.+.+.++ -
T Consensus 223 ~~~Ev--d~n~~~~~v~g--illvlp~~~~y~~~~~~pl~sY~~le~~srnev~dil~nr--k~L~~idn~l~~~----v 292 (685)
T COG1431 223 IKSEV--DNNIDTGVVDG--ILLVLPEDVLYNTPLYYPLKSYLILEIPSRNEVYDILSNR--KLLFYIDNLLVQF----V 292 (685)
T ss_pred hhhhc--ccccceeeecc--eEEECCccccccccccchHHHHHhhcchhhhhhhhHhhhh--hhhhHHHHHHHHH----H
Confidence 34445 37887766642 245788888876642 11110 01111111111111111 2334444443332 1
Q ss_pred chhcccCeeecCceeEEeeEEcCCCeeEeccCCCcceeccc--E---eeeccccceEEEEE---eCCc--hhHHHHHHHH
Q 036169 362 PMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNK--I---FVQAAKIDHWAVVN---FSAR--YDIRSLCRDL 431 (619)
Q Consensus 362 ~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~~p~~g~W~~~~~--k---f~~~a~i~~w~vv~---~~~~--~~~~~f~~~l 431 (619)
..+...+..++.++ -.+|.|......-.|-.... . +..|.....|.-+. .+.. .....+.+.+
T Consensus 293 ~~lr~~pw~l~~d~-------ek~pdiv~g~~gktti~n~nl~~ylpy~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv 365 (685)
T COG1431 293 SKLRGKPWILNVDP-------EKGPDIVIGTEGKTTIDNVNLFCYLPYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKV 365 (685)
T ss_pred HHhccCCCccccCc-------ccCCceEecccceeeEehhhhhhhhcccccccceecceeeEEEehhhhhhHHHHHHHHH
Confidence 23444444444443 34555654433444544321 1 22343444554332 2222 1467778888
Q ss_pred HHHHHhcC-CcC---------h-------HhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeE
Q 036169 432 IRFGEMKG-IVT---------P-------VRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQC 494 (619)
Q Consensus 432 ~~~~~~~G-~~i---------~-------~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQc 494 (619)
....+..+ +.. . +++..++.++ ....+...-+- ++...|+.+|+ . +.-|++|.
T Consensus 366 ~~~fkn~n~i~~k~eg~~l~~a~~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr-l--d~~ipsqv 435 (685)
T COG1431 366 VYGFKNSNGIDWKVEGLTLHVAGKRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR-L--DETIPSQV 435 (685)
T ss_pred HHHHHhccchhhhcccceeeecccchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh-h--cccCccee
Confidence 88777766 432 1 1222333333 01123333333 57799999999 3 45699999
Q ss_pred eccc---cCCHHHHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCC
Q 036169 495 LAPT---KVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPG 563 (619)
Q Consensus 495 v~~~---k~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g 563 (619)
+.-. |.-.-++.|++.|+-+| -+|+++.+-.. . ..-+-|+|+||+.-+-|
T Consensus 436 il~~n~rk~~Kg~~tnla~~~~~k-----------tlgqpY~~r~~----~----gpvDaivGlDvsr~~~g 488 (685)
T COG1431 436 ILDPNNRKPYKGTKTNLASKRYLK-----------TLGQPYLKRNG----L----GPVDAIVGLDVSRVSEG 488 (685)
T ss_pred eeccccCCcchhhhhHHHHHHHHH-----------hcCCceeeecc----C----CCccceeeeeeeEEeeC
Confidence 9863 44456789999999999 99999998521 1 12368999999987643
No 17
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=54.29 E-value=33 Score=30.49 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 448 RMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 448 ~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+.++.+++. +..|.|+++...+...+..|...|.....+.||.+..+... ....+-+-..+-++|.-
T Consensus 18 ~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 18 EEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 334445544 34588998887663457889888887778999999999874 45666778888888876
No 18
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.25 E-value=56 Score=34.06 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 449 MFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 449 ~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
-++.++++.+..|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+.+.++|.-
T Consensus 20 ~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 20 EVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344455443346889888887646689999988877889999999887643 2333456777788854
No 19
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.23 E-value=93 Score=32.48 Aligned_cols=66 Identities=20% Similarity=0.426 Sum_probs=46.8
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
++.++.+.+-.|.|+++...+...+..|...|.....+.||.+..+.... ....-+..++.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 22 IDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444432335889888777646789999988888889999999887743 3444566778888865
No 20
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.52 E-value=91 Score=32.40 Aligned_cols=68 Identities=15% Similarity=0.328 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 448 RMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 448 ~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+.+++++++.+..|.|+++...+...+..|...|.....+.||.+..+.... ....-+...+.++|.-
T Consensus 19 ~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 87 (286)
T PRK14184 19 TEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNAR 87 (286)
T ss_pred HHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344454443346889888776646788999888877789999999887643 3444566777888864
No 21
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.43 E-value=97 Score=32.23 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=45.6
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++.+..|.|+++...+...+..|...|.....+.||.+..+... .....-+.+.+.++|.=
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD 88 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3444444334688988877664568999888777777999999888764 33444566777777754
No 22
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.40 E-value=99 Score=32.34 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
++.++++.+-.|.|+++...+...+..|...|.....+.||.+-.+... .....-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 22 IESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444333578888877764568899988887778999999888764 33444566788888875
No 23
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.01 E-value=1.2e+02 Score=31.55 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
++.++++.+..|.|+++...+...+..|...|.....+.||.+-.+.... ....-+.+.+-++|.-
T Consensus 28 i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 28 VERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444432336889888777646789999888888889999998887643 3444566778888864
No 24
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.82 E-value=94 Score=32.31 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 449 MFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 449 ~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.+++++++....|.|+++...+...+..|...|.....+.||.+..+.... ....-+...+.++|.-
T Consensus 22 ~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 22 KVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344454443335789888776645678999888877789999999887743 3444456777888865
No 25
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.68 E-value=1.1e+02 Score=32.07 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=45.5
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++.+-.|.|+++...+...+..|...|.....+.||.+-.+.... ....-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 22 VARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444432336889888877646788999888877789999988876532 3334455777888765
No 26
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.28 E-value=1e+02 Score=32.16 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=46.8
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
++.++++.+..|.|+++...+...+..|...|.....+.||.+-.+.... ....-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 21 VEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444432236889888887646789999988888889999998887643 3344466777888865
No 27
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.13 E-value=1e+02 Score=32.92 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=44.1
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++.+..|.|+++.+.++.++..|-..|.....+.||.+..+.... ....-+..++.++|.-
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444443345788888877656778998888877778999998877642 2333345677777654
No 28
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=38.98 E-value=1.2e+02 Score=31.65 Aligned_cols=66 Identities=29% Similarity=0.446 Sum_probs=44.6
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++.+..|.|+++...+...+..|...|.....+.||.+-.+... .....-+...+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444334678888877664568899988887778999998888763 33344455667777754
No 29
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.60 E-value=1.1e+02 Score=31.63 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.|.|.++...+...+..|...|.....+.||.+..+.... ....-+.+.+-++|.-
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN 87 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889888887646789999998888889999998887633 3344466777788854
No 30
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.38 E-value=1.1e+02 Score=31.66 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=45.5
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++.+-.|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+++.|+|.-
T Consensus 21 v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 21 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444432235889888776635678998888877789999999887643 3344466777888855
No 31
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.26 E-value=1.2e+02 Score=31.40 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=46.4
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++....|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+.+.++|.-
T Consensus 23 i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 89 (284)
T PRK14177 23 IEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLD 89 (284)
T ss_pred HHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444443335889888776635678998888777779999999987643 3445566788888864
No 32
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.62 E-value=1.1e+02 Score=31.91 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=46.2
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 449 MFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 449 ~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
-+++++++.+..|.|+++..-+...+..|...|.....+.||.+-.+... .....-+...+.++|.-
T Consensus 22 ~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 22 EVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34445544334688888887664568899988888888999998877653 33444455677788765
No 33
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=37.19 E-value=1.3e+02 Score=32.40 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=45.9
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++.+..|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+.+.++|.-
T Consensus 93 v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D 159 (364)
T PLN02616 93 VSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNND 159 (364)
T ss_pred HHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44455543345889888887646789999888877779999988776533 3344456777777754
No 34
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.48 E-value=1.3e+02 Score=31.15 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=45.7
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
++.++++.+..|.|+++...+...+..|...|.....+.||.+-.+... .....-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 22 VAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443233578988887764567899988876777999999877764 33444566788888865
No 35
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.77 E-value=1.4e+02 Score=30.93 Aligned_cols=65 Identities=15% Similarity=0.340 Sum_probs=45.5
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++ ...|.|+++...+...+..|...|.....+.||.+..+.... ....-+...+.++|.-
T Consensus 21 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 21 VAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHD 86 (282)
T ss_pred HHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433 235788888777646789999888888889999998887643 3333456777788864
No 36
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.03 E-value=1.4e+02 Score=30.97 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=42.7
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
..|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+.+.++|.-
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 86 (282)
T PRK14166 29 IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHD 86 (282)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788888776645678999888877789999999987743 3344466777888864
No 37
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.82 E-value=1.4e+02 Score=31.20 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
.|.|+++...+...+..|...|.....+.||.+-.+... .....-+.+.+.++|.-
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D 89 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNAD 89 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 588988887764668899988887778999999887663 23344455666677643
No 38
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.67 E-value=1.5e+02 Score=30.73 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=46.0
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
++.++++.+..|.|+++..-+...+..|...|.....+.||.+-.+.... ....-+.+.+-++|.-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 21 IQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444333346888888776646788999888888889999998887643 3344466778888865
No 39
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.44 E-value=1.5e+02 Score=30.85 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
.|.|+++...+...+..|...|.....+.||.+..+... .....-+.+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 588988877664567899988887788999999888764 33444456777888866
No 40
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.30 E-value=1.5e+02 Score=30.88 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=42.7
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
..|.|+++...+..++..|...|.....+.||.+..+.... ....-+...+.++|.-
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 31 IVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788888776645688999888877789999998887643 3344466777888876
No 41
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.44 E-value=1.6e+02 Score=30.48 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.|.|.++...+...+..|...|.....+.||.+..+.... ....-+.+.+.++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 32 IPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789888877645678898887777779999998877642 3333456777888765
No 42
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.47 E-value=2e+02 Score=29.95 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=41.5
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
..|.|+++..-+...+..|...|.....+.||.+-.+.... ....-+-+.+-++|.-
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (284)
T PRK14170 30 KKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788888876645678999888877789999998887643 3333455677788764
No 43
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.55 E-value=2.2e+02 Score=29.54 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++....|.|.++...+...+..|..+|.....+.||.+..+.... ....-+..++-++|..
T Consensus 23 i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 23 VEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred HHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444443335889888877646789999999888889999998887632 2333456667777654
No 44
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.15 E-value=1.5e+02 Score=30.75 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.|.|+++...+...+..|...|.....+.||.+..+.... ....-+.+++.++|.-
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788888777645678999888888889999998887643 3344466778888865
No 45
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.18 E-value=2.3e+02 Score=29.68 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=42.4
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
..|.|+++...+...+..|...|.....+.||.+-.+... .....-+.+.+.++|.-
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888877664567899988887788999999887764 33444466777888866
No 46
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.69 E-value=1.7e+02 Score=30.42 Aligned_cols=57 Identities=16% Similarity=0.387 Sum_probs=42.0
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
..|.|+++...+...+..|...|.....+.||.+..+.... ....-+..++.++|.-
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d 82 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNND 82 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36889888777645688999988888889999998887643 3333455777777754
No 47
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.39 E-value=2.3e+02 Score=29.36 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.|.|+++...+...+..|...|.....+.||.+-.+.... ....-+.+.+-++|.-
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788888776645678999888877789999998877643 3444466777788764
No 48
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.34 E-value=2.9e+02 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
.|.|.++...+...+..|...|.....+.||.+-.+... .....-+..++-++|.-
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRD 88 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 588988877764678899888887778999999877664 33444456777777754
No 49
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.00 E-value=3.4e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=23.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHHHHhcCCcC
Q 036169 411 DHWAVVNFSARYDIRSLCRDLIRFGEMKGIVT 442 (619)
Q Consensus 411 ~~w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i 442 (619)
-+.+++.++++.....+++...+.|++.||.+
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~ 61 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEF 61 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EE
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCce
Confidence 45677777777778889999999999999987
No 50
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.88 E-value=3.1e+02 Score=28.40 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 459 KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 459 ~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
..|.|+++...+...+..|-..|.....+.||.+..+.... ....-+...+.++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889888877645678999888877789999999887643 3444456777787755
No 51
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=1.1e+02 Score=30.25 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=59.3
Q ss_pred eeeccccceEEEEEeCCchhHHHHHHHHHHHHHhcCCcChH----hHHHHHHHHH-H--hccCCCeEEEEEcCCCCCchh
Q 036169 404 FVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPV----RADRMFVQMK-Q--KFEKCPCFLLCLLPDKKDSDL 476 (619)
Q Consensus 404 f~~~a~i~~w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~----~~~~~~~~l~-~--~~~~~~~lv~~ilp~~k~~~~ 476 (619)
.+..|....-++++++.+.-+.. -..|+-.++..|+++.. .+-+++-... + +++.-..++++--.. +-...
T Consensus 69 il~~ad~~dVa~LVVGdPfgATT-HsDlvlRAk~~~ipv~vIHNASimNavG~CGLqlY~fGetVSiv~ftd~w-rP~Sf 146 (272)
T KOG3123|consen 69 ILDEADKEDVAFLVVGDPFGATT-HSDLVLRAKELGIPVEVIHNASIMNAVGCCGLQLYNFGETVSIVFFTDNW-RPESF 146 (272)
T ss_pred HhhhhhhcceEEEEecCcccccc-hhhhheehhhcCCCeEEEechHHHhhhccceeeeeccCcEEEEEEEccCc-CchhH
Confidence 44456666777777765421111 12344456788888731 2222222111 1 122234455544333 34578
Q ss_pred HHHHhhhhccccCceeeEeccccCCHHHHHHHH
Q 036169 477 YGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVL 509 (619)
Q Consensus 477 Y~~iK~~~~~~~gV~TQcv~~~k~~~q~~~NI~ 509 (619)
|+.||+ ..+.|..|-|++--|.+.|.+.|++
T Consensus 147 ydkI~~--Nr~~glHTLcLLDIkvkEqs~enl~ 177 (272)
T KOG3123|consen 147 YDKIKE--NRQLGLHTLCLLDIKVKEQSVENLA 177 (272)
T ss_pred HHHHHH--hhhcCceeEEEEEEeeccHHHHHHh
Confidence 999997 6889999999998777778777776
No 52
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.59 E-value=2.6e+02 Score=29.10 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
.|.|+++...+...+..|...|.....+.||.+-.+.... ....-+...+.++|.-
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNND 88 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788888777645678999888877889999998887643 3333455677777753
Done!