Query 036169
Match_columns 619
No_of_seqs 157 out of 1001
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 7E-104 2E-108 918.1 54.1 560 2-611 33-650 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 1.3E-92 4.4E-97 823.5 42.2 579 2-611 25-819 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 1.4E-55 4.6E-60 500.1 21.3 478 12-607 6-549 (706)
4 1u04_A Argonaute, hypothetical 100.0 3.9E-51 1.3E-55 463.4 24.2 490 8-609 3-605 (771)
5 3ho1_A Argonaute; argonaute, p 100.0 1.6E-41 5.6E-46 378.7 28.5 476 8-610 6-524 (685)
6 2yha_A Post-transcriptional ge 100.0 7.6E-36 2.6E-40 318.6 11.4 191 399-610 2-219 (388)
7 2yhb_A QDE-2, post-transcripti 100.0 8.8E-35 3E-39 314.4 11.5 191 399-610 2-219 (437)
8 1vyn_A Argonaute2; nucleic aci 99.9 1.8E-27 6E-32 219.3 10.1 131 198-341 2-143 (143)
9 4g0o_A Protein argonaute 5; MI 99.9 6.7E-25 2.3E-29 201.3 12.3 120 401-534 2-139 (139)
10 2xfm_A MIWI, PIWI-like protein 99.9 3.4E-25 1.2E-29 205.6 8.0 134 200-352 2-150 (150)
11 4g0x_A Protein argonaute 1; MI 99.9 3.1E-24 1.1E-28 198.8 12.8 122 401-534 2-147 (147)
12 3luc_A Protein argonaute-2; MI 99.9 7.6E-24 2.6E-28 194.1 11.8 118 400-531 1-138 (138)
13 3qir_A PIWI-like protein 2; st 99.9 7.2E-24 2.5E-28 195.1 8.7 131 200-350 2-148 (148)
14 4g0m_A Protein argonaute 2; MI 99.9 1.6E-23 5.5E-28 194.7 10.3 121 401-534 2-150 (150)
15 3mj0_A Protein argonaute-2; ar 99.9 1.6E-23 5.6E-28 187.4 9.1 113 199-324 1-124 (124)
16 3o7v_X PIWI-like protein 1; PI 99.9 1.2E-21 4.1E-26 174.7 10.6 114 201-333 2-124 (124)
17 1r6z_P Chimera of maltose-bind 99.8 1.3E-20 4.6E-25 209.2 9.2 124 191-327 375-509 (509)
18 2w42_A PIWI, putative uncharac 99.7 1.9E-18 6.4E-23 186.7 -0.1 163 411-610 47-231 (427)
19 2qvw_A GLP_546_48378_50642; di 98.8 1.9E-09 6.6E-14 123.2 6.5 84 223-318 151-253 (756)
20 2l69_A Rossmann 2X3 fold prote 43.2 39 0.0013 27.5 5.2 53 413-470 3-60 (134)
21 4b4u_A Bifunctional protein fo 39.7 56 0.0019 32.8 7.0 66 450-515 43-109 (303)
22 4a26_A Putative C-1-tetrahydro 29.0 1.1E+02 0.0038 30.5 7.2 68 448-515 24-93 (300)
23 4a5o_A Bifunctional protein fo 26.9 1.3E+02 0.0043 29.9 7.1 66 450-515 25-91 (286)
24 1a4i_A Methylenetetrahydrofola 26.9 1.2E+02 0.004 30.4 6.9 68 448-515 22-91 (301)
25 3l07_A Bifunctional protein fo 25.5 1.2E+02 0.0042 30.0 6.7 66 450-515 24-90 (285)
26 1b0a_A Protein (fold bifunctio 23.7 1.2E+02 0.0041 30.2 6.2 67 449-515 22-89 (288)
27 2c2x_A Methylenetetrahydrofola 22.1 1.6E+02 0.0054 29.2 6.7 65 450-515 23-88 (281)
28 3p2o_A Bifunctional protein fo 21.7 1.5E+02 0.005 29.5 6.4 65 450-515 24-89 (285)
29 1edz_A 5,10-methylenetetrahydr 20.3 1.5E+02 0.0051 29.9 6.2 66 448-515 23-89 (320)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=6.7e-104 Score=918.10 Aligned_cols=560 Identities=26% Similarity=0.483 Sum_probs=483.6
Q ss_pred CCCCCCeEEEEeeEEEEEecCCCceEEEEc----------cccHHHHHHHHHhcc-ccccCCceeeeCCceeEEccCCCC
Q 036169 2 SGSKGEITSLLSNHFKVSITGASGHIFHYS----------GIRRKIIDKVCETNS-ADLAEKDIAYDGEKSLFTIGALPH 70 (619)
Q Consensus 2 ~Gt~G~~v~L~tN~f~i~~~~~~~~iy~Y~----------~~~r~i~~~l~~~~~-~~~~~~~~~yDG~~~lys~~~L~~ 70 (619)
+||.|++|.|+||||+|+++ +..+|||| +.+|+|+++++++++ ..|++..+||||+++|||+++|+.
T Consensus 33 ~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~ 110 (861)
T 4f3t_A 33 FGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPI 110 (861)
T ss_dssp CCCCSEEEEEEESEEEEECC--SCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSC
T ss_pred CCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCC
Confidence 49999999999999999974 56899999 135677888888774 446666789999999999999997
Q ss_pred CCCceEEecCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhc
Q 036169 71 KKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQH 150 (619)
Q Consensus 71 ~~~~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~ 150 (619)
++..+++.+.... + .+.++|+|+|++++++++++|.+|++|...+.+.+++|+||||+|+.
T Consensus 111 ~~~~~~~~v~~~~------~-------------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~ 171 (861)
T 4f3t_A 111 GRDKVELEVTLPG------E-------------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL 171 (861)
T ss_dssp SSCEEEEECCC--------------------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecCC------C-------------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh
Confidence 5444444332110 0 13678999999999999999999999998888899999999999997
Q ss_pred ccccceeccccccccc-------cc-c-ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCCCCc-----
Q 036169 151 AAKQMNLGVSLTLEVV-------FL-D-LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDC----- 216 (619)
Q Consensus 151 ~~~~~~~~~gr~f~~~-------~~-~-e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~----- 216 (619)
+. .++..+||+||.+ .+ + |+|+||++|||+++++++||+|+++++|+++++|+|+|.++++.++.
T Consensus 172 ~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~ 250 (861)
T 4f3t_A 172 PS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQK 250 (861)
T ss_dssp HH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---C
T ss_pred cc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcc
Confidence 65 5689999999863 23 3 99999999999999999999999999999999999999988765432
Q ss_pred --hhhhHHHHHHHhcCcEEEEee---cCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCcccc
Q 036169 217 --YQLHWAKAKRTLKNLRIRVHP---FNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCF 291 (619)
Q Consensus 217 --~~~~~~~l~~~Lkgl~V~~~~---~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~ 291 (619)
.+.++.+++++|+|++|.++| ++|+|+|.||++.++++.+|.++..+ +++.++||+|||+++||++|+|
T Consensus 251 ~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~------g~~~~iSV~dYFk~kYni~L~~ 324 (861)
T 4f3t_A 251 PLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES------GQTVECTVAQYFKDRHKLVLRY 324 (861)
T ss_dssp CCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS------SCEEEEEHHHHHHHHHCCCCSC
T ss_pred ccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC------CCceeEEHHHHHHHhcCcccCC
Confidence 233578899999999999999 46899999999988989999864321 2236899999999999999999
Q ss_pred CCCccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCeee
Q 036169 292 SGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISI 371 (619)
Q Consensus 292 ~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i 371 (619)
|+||||++|++++++|||||||.|+|||+++++|+++|+++|+++|+..|.+|.+.|.++++.++++.+++|++|||+|
T Consensus 325 -p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i 403 (861)
T 4f3t_A 325 -PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMV 403 (861)
T ss_dssp -TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEE
T ss_pred -CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEE
Confidence 9999999998888999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred cCceeEEeeEEcCCCeeEe--------ccCCCcceecccEeeeccccceEEEEEeCCc-----hhHHHHHHHHHHHHHhc
Q 036169 372 NSRFAKVEGRILSAPRGAY--------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSAR-----YDIRSLCRDLIRFGEMK 438 (619)
Q Consensus 372 ~~~~~~v~~rvL~~P~i~~--------~p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~-----~~~~~f~~~l~~~~~~~ 438 (619)
+++|++|+||+|+||+|.+ .|.+|+|++++++|++|+++++|++++++.. ..++.|++.|.+.|+.+
T Consensus 404 ~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~ 483 (861)
T 4f3t_A 404 KDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDA 483 (861)
T ss_dssp CSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999985 3578999999999999999999999998642 26899999999999999
Q ss_pred CCcCh------------HhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHH
Q 036169 439 GIVTP------------VRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEH 503 (619)
Q Consensus 439 G~~i~------------~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q 503 (619)
||.+. ++++.+++.+++.. .+++|||||||+ + .+.|+.||++||+++||+||||+.+ |.++|
T Consensus 484 G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q 560 (861)
T 4f3t_A 484 GMPIQGQPCFCKYAQGADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQ 560 (861)
T ss_dssp TCCBCSCCSEEEECCSSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHH
T ss_pred CcccCCCCeEEEecCchHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHHHHHHHhcccCCcceEEEEecccccccHH
Confidence 99882 35788999988765 468999999997 4 6899999999999999999999874 57899
Q ss_pred HHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCC
Q 036169 504 DLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWP 583 (619)
Q Consensus 504 ~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~ 583 (619)
+++||+||||+| |||+||.+.+. ..|.+...+|||||+||+||++|+...||||||| ||+| +
T Consensus 561 ~~~ni~lKiN~K-----------lGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~v---aS~d-~ 622 (861)
T 4f3t_A 561 TLSNLCLKINVK-----------LGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVV---GSMD-A 622 (861)
T ss_dssp HHHHHHHHHHHH-----------TTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEE---EECS-S
T ss_pred HHHHHHHHHHHh-----------cCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEE---EEcC-C
Confidence 999999999999 99999998643 2355556899999999999999866789999999 9999 4
Q ss_pred ccceeeeEEEecCCccccccccCCCCCC
Q 036169 584 ILSRYRASVRSQSAKLEMTDSLFKPLPN 611 (619)
Q Consensus 584 ~~~~y~~~~~~Q~~~~Eii~~l~~~~~~ 611 (619)
.+++|++++++|.+++|+|++|.+|+..
T Consensus 623 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~ 650 (861)
T 4f3t_A 623 HPNRYCATVRVQQHRQEIIQDLAAMVRE 650 (861)
T ss_dssp SSCCEEEEEEEESTTCCSCTTHHHHHHH
T ss_pred CcceEEEEEEEcCCCccHHHHHHHHHHH
Confidence 9999999999999999999999888653
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.3e-92 Score=823.46 Aligned_cols=579 Identities=19% Similarity=0.263 Sum_probs=434.6
Q ss_pred CCCCCCeEEEEeeEEEEEecCCC-------------------ceEEEEc--------c----------------ccHHHH
Q 036169 2 SGSKGEITSLLSNHFKVSITGAS-------------------GHIFHYS--------G----------------IRRKII 38 (619)
Q Consensus 2 ~Gt~G~~v~L~tN~f~i~~~~~~-------------------~~iy~Y~--------~----------------~~r~i~ 38 (619)
+||.|++|.|+||||.|.+.... ..||+|+ + +.++||
T Consensus 25 yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ii 104 (1046)
T 4f1n_A 25 YGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKKYELI 104 (1046)
T ss_dssp CCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------CCHHHHHHHH
T ss_pred CCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCcccccchhHHHHHH
Confidence 69999999999999999997520 3899999 1 235788
Q ss_pred HHHHHhc--cccccCCceeeeCCceeEEccCCC---CCCCceEEecC-----CCCCCCCCCCCCCcchhhhhhccCCCCe
Q 036169 39 DKVCETN--SADLAEKDIAYDGEKSLFTIGALP---HKKNGVPDLSQ-----TTSNDSPDGHGSNNERDKKRRRVSQSKT 108 (619)
Q Consensus 39 ~~l~~~~--~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~~v~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 108 (619)
..++++. ...+ +..+||||+++|||..+|+ .....+.|++. ++.++.|.. |.+-..+.....+.++
T Consensus 105 ~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 180 (1046)
T 4f1n_A 105 EALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSN---KASLQKKIDPELEEMV 180 (1046)
T ss_dssp HHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC----------------------------------CGG
T ss_pred HHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccc---cccccccccccccCce
Confidence 9888873 2224 4569999999999999999 34446777766 221110000 0000000011246788
Q ss_pred eEEEEecccccChHHHHHHhcCCCCcc--h---HHHHHHHHHHHhhccccc-ce-eccc-cccc--cc------ccc--c
Q 036169 109 FKVEISFPAKIPLPAIAAALHGQESQN--S---REAFRVLDIILRQHAAKQ-MN-LGVS-LTLE--VV------FLD--L 170 (619)
Q Consensus 109 ~~v~I~~~~~i~~~~l~~~l~g~~~~~--~---~~~~q~Lniil~~~~~~~-~~-~~~g-r~f~--~~------~~~--e 170 (619)
|+|+|+++++|++++|.+|+.|...+. . .+.+++|++||.+.+... .. .++| +.|| ++ +++ |
T Consensus 181 ~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~~Lg~Gle 260 (1046)
T 4f1n_A 181 SQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQIGGY 260 (1046)
T ss_dssp GGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEEECSSSEE
T ss_pred EEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCccccCCCcEE
Confidence 999999999999999999999987542 2 678999999999998755 32 4565 4454 32 333 9
Q ss_pred eeeeeeEEEEEecCeeeEeeecceeeeecC-----------------CcHHHHHHHhcC--------------CCCchhh
Q 036169 171 GCWGFHSSFQATQGGLSLNIDGSTTSIIKP-----------------GPLVDFLIANQN--------------VHDCYQL 219 (619)
Q Consensus 171 ~~~G~~~Svr~~~~~l~LniD~s~~~f~~~-----------------~~l~d~i~~~~~--------------~~~~~~~ 219 (619)
+|+|||+||||++++|+||||+++++|+++ ++|+|+|.++++ .+.+...
T Consensus 261 ~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1046)
T 4f1n_A 261 LLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVK 340 (1046)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCTTTTSCCCCSS
T ss_pred EEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccccccccCCCchh
Confidence 999999999999999999999999999985 699999888754 1112222
Q ss_pred hH-------HHHHHHhcCcEEEEeecC---------------ceEEEeccCccCcccceeeccCCCC--CCC-CCc-cce
Q 036169 220 HW-------AKAKRTLKNLRIRVHPFN---------------REYRITGLSDSTCKRQMFSWKSGVK--DRN-GDV-KCV 273 (619)
Q Consensus 220 ~~-------~~l~~~Lkgl~V~~~~~~---------------r~~~I~~i~~~~a~~~~F~~~~~~~--~g~-~~~-~~~ 273 (619)
++ .+++++||||+|+++|.+ +.|+|.||+..+|.+.+|++++++. +|. +.+ +++
T Consensus 341 d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~ 420 (1046)
T 4f1n_A 341 DLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPI 420 (1046)
T ss_dssp HHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---------------------
T ss_pred hhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccccCCcCce
Confidence 44 789999999999999964 4699999999999999998764310 000 011 236
Q ss_pred EEeHHHHHHHhcCCccccCCCccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036169 274 DVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVM 353 (619)
Q Consensus 274 ~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~ 353 (619)
.+||+|||+++||++|+| |+||||++|+. .+|||||||.|+|||+|+++|++ +++||++||++|.+|++.|.+..
T Consensus 421 ~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~eR~~~I~~~~ 495 (1046)
T 4f1n_A 421 NINTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRPTEKFDLISRLS 495 (1046)
T ss_dssp --CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCcHHHHHHHHHHH
Confidence 899999999999999999 99999999975 37999999999999999999987 48999999999999999998864
Q ss_pred -H----hcCCCCcchhcccCeeecCceeEEeeEEcCCCeeEec----------------cCCCcceecccEeeeccc-cc
Q 036169 354 -R----SNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYH----------------PKNGRWSFHNKIFVQAAK-ID 411 (619)
Q Consensus 354 -~----~l~~~~~~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~~----------------p~~g~W~~~~~kf~~~a~-i~ 411 (619)
+ .+..+.+++|++|| +|+.+|++|+||||+||.|.|. |.+|+|||++++|++|+. +.
T Consensus 496 ~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~~~~~~~ 574 (1046)
T 4f1n_A 496 MPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQV 574 (1046)
T ss_dssp HHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTCCCSBCCSSCE
T ss_pred HHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCCEEecCCcccc
Confidence 2 24445678999999 9999999999999999999952 245999999999999874 56
Q ss_pred eEEEEEeC-Cc--------hhHHHHHHHHHHHHHhcCCcChH--------------------------------------
Q 036169 412 HWAVVNFS-AR--------YDIRSLCRDLIRFGEMKGIVTPV-------------------------------------- 444 (619)
Q Consensus 412 ~w~vv~~~-~~--------~~~~~f~~~l~~~~~~~G~~i~~-------------------------------------- 444 (619)
+|.++++. .. .+++.|++.|++.|+++||.+..
T Consensus 575 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 654 (1046)
T 4f1n_A 575 NLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRG 654 (1046)
T ss_dssp EEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------------------
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccccccccccccccccccc
Confidence 77666542 21 36889999999999999998732
Q ss_pred -----------hHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecc---ccCCHHHHHHHHH
Q 036169 445 -----------RADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAP---TKVNEHDLMNVLL 510 (619)
Q Consensus 445 -----------~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~---~k~~~q~~~NI~l 510 (619)
..+..+..+.++. ..++|||||||+++++++|+.||++||+++||+||||+. .|.++||++||+|
T Consensus 655 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~l 733 (1046)
T 4f1n_A 655 APSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVM 733 (1046)
T ss_dssp -----CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHH
Confidence 1233455555544 468999999998327899999999999999999999987 4678999999999
Q ss_pred HHHhcCcccccCccccCCCccccccccccCCCCCcc----CCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccc
Q 036169 511 KINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVS----KVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILS 586 (619)
Q Consensus 511 KiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~----~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~ 586 (619)
|||+| |||+||.|+.. .++.+. ..+|||||+||+|++++ ..+|||||| ||+| +.++
T Consensus 734 KiN~K-----------LGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavV---aS~d-~~~t 793 (1046)
T 4f1n_A 734 KMNLK-----------LLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLV---GSYD-DKFT 793 (1046)
T ss_dssp HHHHH-----------TTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEE---ECCS-SSCC
T ss_pred HHHHh-----------cCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEE---EEEC-CCcC
Confidence 99999 99999999753 134342 34699999999995444 356999999 9999 5999
Q ss_pred eeeeEEEecCC-ccccccccCCCCCC
Q 036169 587 RYRASVRSQSA-KLEMTDSLFKPLPN 611 (619)
Q Consensus 587 ~y~~~~~~Q~~-~~Eii~~l~~~~~~ 611 (619)
+|++++++|.+ ++|+|++|.+|+..
T Consensus 794 ~y~s~~~~Q~~~~~Eii~~L~~~~~~ 819 (1046)
T 4f1n_A 794 QFPGDYMLQDGPGEEIITNVGSLMLN 819 (1046)
T ss_dssp CCCEEEEEEEEETCCSCTTGGGGHHH
T ss_pred eEeeEEEEecCCCccHHHHHHHHHHH
Confidence 99999999998 99999999998753
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=1.4e-55 Score=500.12 Aligned_cols=478 Identities=15% Similarity=0.124 Sum_probs=346.7
Q ss_pred EeeEEEEEecCCCceEEEEc---ccc----HHHHHHHHHhccccccCCceeeeCCceeEEccCCCCCCCceEEecCCCCC
Q 036169 12 LSNHFKVSITGASGHIFHYS---GIR----RKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSN 84 (619)
Q Consensus 12 ~tN~f~i~~~~~~~~iy~Y~---~~~----r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~ 84 (619)
.-|.|.|+..+.+.++--+. ... .++.++++-+ .+...|-.....|+.++.+.+.. ..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--- 74 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVFKPTHEIQKEKLNKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTL--YLTLSN--- 74 (706)
T ss_dssp EESEEEEEECCSSCEEBCCEESSCCCHHHHHHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCC--EEEECS---
T ss_pred hhhhheeeeccCCceeEeecchHHHHHHhhhheeeEeeee------cCCccccccccceeccccccceE--EEEcCC---
Confidence 45899998875444432222 222 3455555443 23556666678999999886532 222221
Q ss_pred CCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhcccccceeccccccc
Q 036169 85 DSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLE 164 (619)
Q Consensus 85 ~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~~~~~~~~~~gr~f~ 164 (619)
+. .|+|++++++..- ....+++++|+++.+++.. ...+..+||+||
T Consensus 75 ---------------------~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~l~~~~igr~~~ 120 (706)
T 1yvu_A 75 ---------------------GE--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT--KVKDKFISDFYK 120 (706)
T ss_dssp ---------------------SS--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred ---------------------CC--EEEEEEEEEeecc---------CCCCCHHHHHHHHHHHHHc--CChHhhhCcccc
Confidence 22 5669999987620 0124578999999999887 234568999998
Q ss_pred cc-----c--cc---ceeeeeeEEEEEec-CeeeEeeecceeeeecCCcHHHHHHHhcCCCCchhhhHHHHHHHhcCcEE
Q 036169 165 VV-----F--LD---LGCWGFHSSFQATQ-GGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRI 233 (619)
Q Consensus 165 ~~-----~--~~---e~~~G~~~Svr~~~-~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkgl~V 233 (619)
++ + .+ |+||||.+||+..+ ++++||+|++|+ |.+..||+|+|.+ +.... ..+
T Consensus 121 ~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~~~---------------~~~ 183 (706)
T 1yvu_A 121 KFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDFNP---------------KRI 183 (706)
T ss_dssp HHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCCCC---------------TTC
T ss_pred CccccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHH-hhhcc---------------hhH
Confidence 64 2 23 99999999999999 999999999999 5668999999998 43211 245
Q ss_pred EEeecCceE--EEecc-CccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCc--------cccCCCccEEEeCC
Q 036169 234 RVHPFNREY--RITGL-SDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRIN--------LCFSGDFPCIDVGK 302 (619)
Q Consensus 234 ~~~~~~r~~--~I~~i-~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~--------L~~~p~lPlv~~~~ 302 (619)
..+|+|++| +|++| +|+..+.++|. ++ ..+| ||+++|++. .+. +.+|++..+.
T Consensus 184 ~~~y~n~ty~~riddi~~~~~~P~~~f~-~g-----------~~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~~~ 247 (706)
T 1yvu_A 184 RVKPIGIDFVGRVQDVFKAKEKGEEFFR-LC-----------MERS---THKSSKKAWEELLKNRELRE-KAFLVVLEKG 247 (706)
T ss_dssp EEEETTCCCCEEEEEEEESTTSCHHHHH-HH-----------HHTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEETTS
T ss_pred HhhcccceeccccCcccccCCCcceEec-CC-----------CCcc---eEecccCcchhhhhcccccc-CCceEEeccC
Confidence 678888899 99998 99999999996 21 3566 999988765 444 5555554433
Q ss_pred CCC-CcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCeeecCceeEEeeE
Q 036169 303 PRK-PTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGR 381 (619)
Q Consensus 303 ~~k-~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~~~~~v~~r 381 (619)
+.. ..+++| +|.+ .+|+++|+++|+++|+.+|++|.+.|+++++.+ ++.|++|||+|+++|++|+||
T Consensus 248 ~~~p~~lL~p-lc~~-------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gR 315 (706)
T 1yvu_A 248 YTYPATILKP-VLTY-------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGK 315 (706)
T ss_dssp CEEEGGGEEE-CCCC-------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEE
T ss_pred CCCCceeecc-cccc-------CCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHHcCCEECCceeecccE
Confidence 111 223333 4544 369999999999999999999999999999874 578999999999999999999
Q ss_pred EcCCCeeEec--------c-CCCcceecccEeeeccccce---EEEEEeCCchhHHHHHHHHHHHHHhcCCcCh------
Q 036169 382 ILSAPRGAYH--------P-KNGRWSFHNKIFVQAAKIDH---WAVVNFSARYDIRSLCRDLIRFGEMKGIVTP------ 443 (619)
Q Consensus 382 vL~~P~i~~~--------p-~~g~W~~~~~kf~~~a~i~~---w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~------ 443 (619)
+||+|.|.+. + .+|.|++++ +|+.++.++. |.+++.....+++.|++.|.+.|+.+||.+.
T Consensus 316 VLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~ 394 (706)
T 1yvu_A 316 LNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL 394 (706)
T ss_dssp CCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred EcCCceeecCCCCcceeccCCcccccccC-ceecccccccceEEEEEecchhHHHHHHHHHHHHHHHHcCceecCCcccc
Confidence 9999999721 1 223455554 5777888888 8555443223689999999999999999982
Q ss_pred ---HhHHHHHHHHHHhc--cCCCeEEEEEcCCCC-------CchhHHHHhhhhccccCceeeEeccc---c-CCHHHHHH
Q 036169 444 ---VRADRMFVQMKQKF--EKCPCFLLCLLPDKK-------DSDLYGSWKRKTLSEFGIFNQCLAPT---K-VNEHDLMN 507 (619)
Q Consensus 444 ---~~~~~~~~~l~~~~--~~~~~lv~~ilp~~k-------~~~~Y~~iK~~~~~~~gV~TQcv~~~---k-~~~q~~~N 507 (619)
+.++++++++.+.. ..++++++||+|+ + +.+.|+.||++|+ +.||+||||..+ + ...|+++|
T Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~N 472 (706)
T 1yvu_A 395 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLN 472 (706)
T ss_dssp EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcccCCCcEEEEEECC-ccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHH
Confidence 34677788777543 2478999999998 6 6899999999966 999999999974 2 35799999
Q ss_pred HHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCc--c
Q 036169 508 VLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPI--L 585 (619)
Q Consensus 508 I~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~--~ 585 (619)
|+||||+| |||+||.|+. | ...+|||||+||+||+.+. ..||++|+| ||+| +. +
T Consensus 473 I~lkiN~K-----------LGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~v---as~d-~~g~~ 528 (706)
T 1yvu_A 473 VAEQVLAK-----------TGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFT---KIFN-SKGEL 528 (706)
T ss_dssp HHHHHHHH-----------TTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEE---EEEC-TTSCE
T ss_pred HHHHHHHH-----------hCCeeeeecc------C--CCCceEEEEEEEeccCCCC-CCceEEEEE---EEEc-CCCCE
Confidence 99999999 9999999973 2 1368999999999997543 369999999 9998 34 5
Q ss_pred ceeeeEEEecCCccccccccCC
Q 036169 586 SRYRASVRSQSAKLEMTDSLFK 607 (619)
Q Consensus 586 ~~y~~~~~~Q~~~~Eii~~l~~ 607 (619)
++|.+..+.|. ++|++++|..
T Consensus 529 ~~~~~~~~~q~-~~ei~~~l~~ 549 (706)
T 1yvu_A 529 VRYYLTSYPAF-GEKLTEKAIG 549 (706)
T ss_dssp EEEEEEEECSC-TTHHHHHHHH
T ss_pred EEEEEEecccc-cchHHHHHHH
Confidence 78888877554 7889888543
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.9e-51 Score=463.38 Aligned_cols=490 Identities=11% Similarity=0.017 Sum_probs=346.8
Q ss_pred eEEEEeeEEEEEec-CCCceEEEEc------cccHHHHHHHHHhccccccCCceeeeCCce--eEEccCCCCCCCceEEe
Q 036169 8 ITSLLSNHFKVSIT-GASGHIFHYS------GIRRKIIDKVCETNSADLAEKDIAYDGEKS--LFTIGALPHKKNGVPDL 78 (619)
Q Consensus 8 ~v~L~tN~f~i~~~-~~~~~iy~Y~------~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~--lys~~~L~~~~~~~~v~ 78 (619)
++.|.+|||+|... .|+ .+|+|+ ...+ ....++..++..+ | .++|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~~~~~~~~-g-~~~fdg~-~~~l~~~~~l~~-------- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSIYRLAYEN-V-GIVIDPE-NLIIATTKELEY-------- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCHHHHHHHT-T-EEEEETT-TTEEEESSCCCC--------
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHHHHHHhhc-C-cEEecCc-ceeeeccceecc--------
Confidence 67899999999863 356 899999 1233 5555666665556 4 8999995 6 999998871
Q ss_pred cCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhcccccc---
Q 036169 79 SQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQM--- 155 (619)
Q Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~~~~~~--- 155 (619)
.+..+.|+++.+++++ +|++|+++|..+...+
T Consensus 70 --------------------------~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~ 104 (771)
T 1u04_A 70 --------------------------EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGE 104 (771)
T ss_dssp --------------------------SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSH
T ss_pred --------------------------CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccch
Confidence 1346788898888765 6789999999998766
Q ss_pred --eecccccccccc--cc-ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCCCCchhhhHHHHHHHhcC
Q 036169 156 --NLGVSLTLEVVF--LD-LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKN 230 (619)
Q Consensus 156 --~~~~gr~f~~~~--~~-e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkg 230 (619)
+..+||+||++. ++ ++|+|+.+||+..+++++|++|++|++.+ .+||+|+|.++.+ ..........|
T Consensus 105 ~~l~~~~r~~~~~~~~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~~~-------~~~~~~~~~~g 176 (771)
T 1u04_A 105 YELSKLLRKFRKPKTFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKDPK-------ELEEFLMTHKE 176 (771)
T ss_dssp HHHHHHHTTTSCCEEETTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTCHH-------HHHHHHHHSTT
T ss_pred HHHHHHhhhcCCCccccccEEEECceeeEEecCCceEEEEEeeeeEee-hhHHHHHHHHHHH-------HHHHHHHhccC
Confidence 678899999873 45 99999999999999999999999999887 5999999876431 23455666778
Q ss_pred cEEEEe--------e--cCceEEEeccCccCcccc--ee---eccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCc
Q 036169 231 LRIRVH--------P--FNREYRITGLSDSTCKRQ--MF---SWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDF 295 (619)
Q Consensus 231 l~V~~~--------~--~~r~~~I~~i~~~~a~~~--~F---~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~l 295 (619)
..|.+. | ++++|++++ .++..+.+ +| +.+++ .+++++.+||.++|++ ++ ++|
T Consensus 177 ~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~y~~~y~i--~d-~~Q 243 (771)
T 1u04_A 177 NLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERY---------WNTPEAKLEFYRKFGQ--VD-LKQ 243 (771)
T ss_dssp TCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHH---------CCSHHHHHHHHHHHCS--CC-TTS
T ss_pred cEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCC---------CCCcchhHHHHHhcCc--Cc-CCC
Confidence 877777 6 678888877 66555554 55 43210 0345777788899995 87 999
Q ss_pred cEEEeCCC-------CCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhc-----CCC--Cc
Q 036169 296 PCIDVGKP-------RKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSN-----KYD--SE 361 (619)
Q Consensus 296 Plv~~~~~-------~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l-----~~~--~~ 361 (619)
|+|..+.+ .+.+||.||||.+++ ...+++...+++|..+++..|.+|.+.+.++.+.+ .-+ ..
T Consensus 244 Pllvs~~~~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~ 320 (771)
T 1u04_A 244 PAILAKFASKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEI 320 (771)
T ss_dssp CEEEEEESCC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEE
T ss_pred CeEEecchhhccCCCCceeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHH
Confidence 99998642 246999999999997 33445667778999999999999999999999998 332 23
Q ss_pred chhcccCeeecCceeEEeeEEcCCCeeEe----ccCCCcce--ecccEeeecc----------ccceEEEEEeCCchhHH
Q 036169 362 PMLRSCAISINSRFAKVEGRILSAPRGAY----HPKNGRWS--FHNKIFVQAA----------KIDHWAVVNFSARYDIR 425 (619)
Q Consensus 362 ~~l~~~Gi~i~~~~~~v~~rvL~~P~i~~----~p~~g~W~--~~~~kf~~~a----------~i~~w~vv~~~~~~~~~ 425 (619)
+.|+.|| .++.. +.|.++++.+-.+.. .+..++|. +++.+++.+. .|..|++++......+.
T Consensus 321 ~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~~~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~~~~~~~~~ 398 (771)
T 1u04_A 321 EVEKIAQ-ELENK-IRVRDDKGNSVPISQLNVQKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQ 398 (771)
T ss_dssp EEEECCG-GGGSS-EEEECSSSCEEESCCC--------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEETTSCHHHH
T ss_pred HHHhhhh-ccCcC-cccccccccccceeecCcCCCccCCcchhhCCCcceecccchhhhhcccccceEEEEeCCchHHHH
Confidence 5777777 57765 776655555422331 13568995 4555554433 34457666655445677
Q ss_pred HHH---------HHHHHHHHhc-----------CCcChH------------------hHHHHHHHHHHhc-cCCCeEEEE
Q 036169 426 SLC---------RDLIRFGEMK-----------GIVTPV------------------RADRMFVQMKQKF-EKCPCFLLC 466 (619)
Q Consensus 426 ~f~---------~~l~~~~~~~-----------G~~i~~------------------~~~~~~~~l~~~~-~~~~~lv~~ 466 (619)
+|+ +.|.++++.+ ||.++. .++++++++.+.. +..++|++|
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~~~~~~lvlv 478 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFI 478 (771)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhccCCCCCEEEE
Confidence 777 4555544333 344432 4566777776654 246799877
Q ss_pred EcCCCCCchhHHHHhhhhccccCceeeEecccc---C----C-----HHHHHHHHHHHHhcCcccccCccccCCCccccc
Q 036169 467 LLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK---V----N-----EHDLMNVLLKINANCQRELTDPLILLGGLNSLL 534 (619)
Q Consensus 467 ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k---~----~-----~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l 534 (619)
+++..++.+.|+.||+.| .+.||+||||..++ . + .+++.||++|||+| |||.||.|
T Consensus 479 ~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~K-----------LGG~pW~L 546 (771)
T 1u04_A 479 AARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSK-----------LGVKYYVL 546 (771)
T ss_dssp EECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHH-----------TTCBCCEE
T ss_pred EEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHH-----------hCCcceee
Confidence 774325678999999998 79999999998732 1 2 77899999999999 99999999
Q ss_pred cccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccceeeeEEEecCCccccccccCCCC
Q 036169 535 AIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPL 609 (619)
Q Consensus 535 ~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~~~~Eii~~l~~~~ 609 (619)
+. |. .+|||||+||+|++++. ..+|++|.| +|.|+ .+++|.+.+..|.++ |+++ |..|+
T Consensus 547 ~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V---~s~dg-~~~~~~s~~~~~~~~-E~i~-l~~~l 605 (771)
T 1u04_A 547 DY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVM---FDSQG-YIRKIVPIKIGEQRG-ESVD-MNEFF 605 (771)
T ss_dssp SC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEE---EETTS-CEEEEEEEECCCCSS-SSCC-HHHHH
T ss_pred cC------CC---CCEEEEEEEEEcCCCCC-CceEEEEEE---ECCCC-CEEEEEEEEeecCCc-cEEc-HHHHH
Confidence 62 32 58999999999997553 468888888 89884 888898876656654 4454 55444
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.6e-41 Score=378.65 Aligned_cols=476 Identities=14% Similarity=0.063 Sum_probs=333.3
Q ss_pred eEEEEeeEEEEEec-CCCceEEEEc---------cccHHHHHHHHHhccccccCCceeeeCCceeEEccCCCCCCCceEE
Q 036169 8 ITSLLSNHFKVSIT-GASGHIFHYS---------GIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPD 77 (619)
Q Consensus 8 ~v~L~tN~f~i~~~-~~~~~iy~Y~---------~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v 77 (619)
++.|.-|-|.++-- .++.+.|.|+ +.-..++..++.+. |...+==| +.|.|.++ |.. .-.+-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~-~~~-~~~~~ 77 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRA-----GGVTVRMG-DGLASWSP-PEV-LVLEG 77 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHHHHHHHHT-----CSSEEEET-TEEEESSC-TTT-SCCEE
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHHHHHHHHHHh-----CCeEEeec-CceecccC-chh-hhccc
Confidence 57899999999754 3567888888 23456777777763 22222223 57888877 532 22222
Q ss_pred ecCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHH-----HHHHHHhhccc
Q 036169 78 LSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFR-----VLDIILRQHAA 152 (619)
Q Consensus 78 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q-----~Lniil~~~~~ 152 (619)
++.. ..+...+.+.-.-.+.+|..+- ..++++. .|+-.|++. .
T Consensus 78 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~ 125 (685)
T 3ho1_A 78 TLAR---------------------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL-E 125 (685)
T ss_dssp EEEC---------------------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC-S
T ss_pred hhcc---------------------ccCCcceeeeecccccCCCCCh----------HHHHHHHHHHHHHHHHHHHhh-h
Confidence 3221 1134567666666666776431 2233333 345555554 1
Q ss_pred ccceeccccc-cc-ccc-c-c-ceeeeeeEEEEEec-CeeeEeeecceeeeecCCcHHHHHHHhcCCCCchhhhHHHHHH
Q 036169 153 KQMNLGVSLT-LE-VVF-L-D-LGCWGFHSSFQATQ-GGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKR 226 (619)
Q Consensus 153 ~~~~~~~gr~-f~-~~~-~-~-e~~~G~~~Svr~~~-~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~~~~~~~~l~~ 226 (619)
+...-|.. +- ... + + |+.+|+-..|.+.. +++.|.||..+. |+.+.++.+++.+.. .
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~--------------~ 188 (685)
T 3ho1_A 126 --GVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH--------------P 188 (685)
T ss_dssp --SSEEETTEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC--------------C
T ss_pred --ceEEccEEEEeecCCCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCC--------------C
Confidence 11112222 21 222 3 2 99999999999997 889999999999 677899999998743 2
Q ss_pred HhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeCCC-C-
Q 036169 227 TLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKP-R- 304 (619)
Q Consensus 227 ~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~-~- 304 (619)
|. ..|+.+|+.++|.|.+|+ +..+++.|-. ..+|++|||+++|.+ +. -++|+|+...+ +
T Consensus 189 -~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~-------------~~~s~~~y~~~k~~~--~~-~~~~~vv~~~~~~~ 249 (685)
T 3ho1_A 189 -LP-KRVRNAYDRRTWELLRLG-EEDPKELPLP-------------GGLSLLDYHASKGRL--QG-REGGRVAWVADPKD 249 (685)
T ss_dssp -CC-SEEEESSSCCEECCCEEE-CCCTTCC-------------------CSTTTTTTTSTT--TT-SCCCSEEEECSCC-
T ss_pred -cc-HHHhhhcccceEEEeecc-cCCchheecC-------------CCccHHHHHhhcccc--cc-cCCceEEEEecccc
Confidence 34 589999999999999999 4566777642 259999999999987 77 89998865322 1
Q ss_pred -------CCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCeeecCceeE
Q 036169 305 -------KPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAK 377 (619)
Q Consensus 305 -------k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~~~~~ 377 (619)
..+|+.|||| ++. |++.+.+ .+++.+|++|++.+.++++.+ ++.|||+ +++|++
T Consensus 250 ~~~~i~~~~~~l~p~l~-m~~-------l~~~~~~---~~trlsP~~R~~~l~~~~~~i-------~~~~Gl~-~~~~i~ 310 (685)
T 3ho1_A 250 PRKPIPHLTGLLVPVLT-LED-------LHEEEGS---LALSLPWEERRRRTREIASWI-------GRRLGLG-TPEAVR 310 (685)
T ss_dssp --CCEEEETTSEEEECC-TTT-------TSSCSSC---CCCCCCHHHHHHHHHHHHHHH-------HHTTCSC-CCEEEE
T ss_pred CCCcceeeeeeechHhH-HHH-------Hhhhhhh---ccccCCHHHHHHHHHHHHHHH-------HHhcCCC-CCCcce
Confidence 2478999999 664 5554443 688999999999999998764 6789999 999999
Q ss_pred EeeEEcCCCeeEecc--CCCcceecccEeeeccccceEEEEEeCCc-hhHHHHHHHHHHHHHhcCCcCh--------HhH
Q 036169 378 VEGRILSAPRGAYHP--KNGRWSFHNKIFVQAAKIDHWAVVNFSAR-YDIRSLCRDLIRFGEMKGIVTP--------VRA 446 (619)
Q Consensus 378 v~~rvL~~P~i~~~p--~~g~W~~~~~kf~~~a~i~~w~vv~~~~~-~~~~~f~~~l~~~~~~~G~~i~--------~~~ 446 (619)
|+||+||||+| ..- ..+.|++.+.+|+.++.. .|+++++.+. ..++.|++.|.+.|+.+||.|. ++-
T Consensus 311 v~gRvLppp~I-~g~~~~~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d~ 388 (685)
T 3ho1_A 311 AQAYRLSIPKL-MGRRAVSKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQG 388 (685)
T ss_dssp EEEEECCCCCE-ESSSBCSSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGGT
T ss_pred EEEEEcCHHHh-cCCCCcCCchhhccCcceeccCc-eEEEEeccCchHHHHHHHHHHHHHHHhCCcEeccceeecCCCch
Confidence 99999999999 542 235677777778877665 7999998764 4688999999999999999882 111
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEec-c-ccCCHHHHHHHHHHHHhcCcccccCcc
Q 036169 447 DRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLA-P-TKVNEHDLMNVLLKINANCQRELTDPL 524 (619)
Q Consensus 447 ~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~-~-~k~~~q~~~NI~lKiN~K~~~~~~~~~ 524 (619)
..+.+.+++....++|+||||+|+ ++.+.|+.||++| .+.||+||||. . .+...++++||+||||+|
T Consensus 389 ~~~~~~l~~~~~~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQcV~~tl~k~~~~ia~NIaLkINaK--------- 457 (685)
T 3ho1_A 389 LAFREALRKAKEEGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQILNVPLREEERHRWENALLGLLAK--------- 457 (685)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEEEESSCCTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhhhcCCCEEEEEECC-CCccHHHHHHHHH-hcCCCccEEEecccccccHhHHHHHHHHHHHH---------
Confidence 123333333223478999999999 7789999999986 79999999998 2 346788999999999999
Q ss_pred ccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccceeeeEEEecCCccccccc
Q 036169 525 ILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDS 604 (619)
Q Consensus 525 ~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~~~~Eii~~ 604 (619)
|||.||.|+. |. .+|||||+||+|++.. |++|+++- .+.| ....+| +.++.|.+.++.+++
T Consensus 458 --LGG~pW~L~~------P~---~~tmiIGiDVsH~~~~-----~~~~~aav-~~~d-g~~~~~-~~~~~Q~~e~l~~~~ 518 (685)
T 3ho1_A 458 --AGLQVVALSG------AY---PAELAVGFDAGGRESF-----RFGGAACA-VGGD-GGHLLW-TLPEAQAGERIPQEV 518 (685)
T ss_dssp --HTCCCCEECS------CC---SCSEEEEEEEEETTEE-----EEEEEEEE-ECC---CCCEE-ECCCCCCSCCCHHHH
T ss_pred --hCCeeEEecC------CC---CCeEEEEEEEEcCCCC-----ccceEEEE-EECC-CCEEEe-EEEEccCCcEecHHH
Confidence 9999999973 42 6899999999998732 44443300 2235 244554 345677765556678
Q ss_pred cCCCCC
Q 036169 605 LFKPLP 610 (619)
Q Consensus 605 l~~~~~ 610 (619)
|..|+.
T Consensus 519 L~~~l~ 524 (685)
T 3ho1_A 519 VWDLLE 524 (685)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=7.6e-36 Score=318.61 Aligned_cols=191 Identities=24% Similarity=0.380 Sum_probs=161.0
Q ss_pred ecccEeee-ccccceEEEEEeCCc---hhHHHHHHHHHHHHHhcCCcCh-----------HhHHHHHHHHHHhc-cCCCe
Q 036169 399 FHNKIFVQ-AAKIDHWAVVNFSAR---YDIRSLCRDLIRFGEMKGIVTP-----------VRADRMFVQMKQKF-EKCPC 462 (619)
Q Consensus 399 ~~~~kf~~-~a~i~~w~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~-----------~~~~~~~~~l~~~~-~~~~~ 462 (619)
+++++|++ ++++++|+++++..+ .+++.|++.|.+.|+.+||.+. ++.++.| .+++.. ..+++
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF-FAKVKELMSSHQ 80 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH-HHHHHHHHHTCS
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh-HHHHhhccCCCe
Confidence 56789999 679999999999542 3799999999999999999982 1235556 443332 13689
Q ss_pred EEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHH--HHHHHHHHHHhcCcccccCccccCCCcccccccc
Q 036169 463 FLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEH--DLMNVLLKINANCQRELTDPLILLGGLNSLLAIE 537 (619)
Q Consensus 463 lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q--~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~ 537 (619)
|||||||+ ++.+.|+.||++||+++||+||||..+ |.++| |++||+||||+| |||+||.|++
T Consensus 81 lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~K-----------lGG~n~~l~~- 147 (388)
T 2yha_A 81 FVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLK-----------FGGTNHNIKT- 147 (388)
T ss_dssp EEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHH-----------TTCBCCCCCS-
T ss_pred EEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHH-----------hCCcceeccc-
Confidence 99999998 778899999999999999999999974 56788 999999999999 9999999974
Q ss_pred ccCCCCCccCCCeEEEeeeeccCC---CC--CCCCCeEEEEEecccccCCCccceeeeEEEecC-CccccccccCCCCC
Q 036169 538 QSKNLPLVSKVPTIIFGMDVSHGS---PG--HSNVPSVATVGCNSFSRNWPILSRYRASVRSQS-AKLEMTDSLFKPLP 610 (619)
Q Consensus 538 ~~~~lp~l~~~~tMiiG~DV~Hp~---~g--~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~-~~~Eii~~l~~~~~ 610 (619)
.+|++.+.+|||||+||+||+ || ....||||||| ||+| +.+++|.+.+++|. +++|+|++|.+|+.
T Consensus 148 ---~~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavV---aS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~ 219 (388)
T 2yha_A 148 ---PIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLV---STID-QHLGQWPAMVWNNPHGQESMTEQFTDKFK 219 (388)
T ss_dssp ---CCHHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEE---ECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHH
T ss_pred ---cccccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEE---EEcC-CCCCEEEEEEEEcCCCcccHHHHHHHHHH
Confidence 245566689999999999999 87 33589999999 9999 79999999999999 99999999998864
No 7
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=8.8e-35 Score=314.41 Aligned_cols=191 Identities=24% Similarity=0.380 Sum_probs=160.3
Q ss_pred ecccEeee-ccccceEEEEEeCCc---hhHHHHHHHHHHHHHhcCCcChH-----------hHHHHHHHHHHhc-cCCCe
Q 036169 399 FHNKIFVQ-AAKIDHWAVVNFSAR---YDIRSLCRDLIRFGEMKGIVTPV-----------RADRMFVQMKQKF-EKCPC 462 (619)
Q Consensus 399 ~~~~kf~~-~a~i~~w~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~-----------~~~~~~~~l~~~~-~~~~~ 462 (619)
+++++|++ ++++++|+++++..+ ..++.|++.|.+.|+.+||.+.. +.++.| .+++.. ..+++
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF-FAKVKELMSSHQ 80 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH-HHHHHHHHHTCS
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH-HHHHhhccCCCc
Confidence 46788999 579999999999532 37999999999999999999821 224555 333321 13689
Q ss_pred EEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHH--HHHHHHHHHHhcCcccccCccccCCCcccccccc
Q 036169 463 FLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEH--DLMNVLLKINANCQRELTDPLILLGGLNSLLAIE 537 (619)
Q Consensus 463 lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q--~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~ 537 (619)
|||||||+ ++.+.|+.||++||+++||+||||..+ |.++| |++||+||||+| |||+||.|+.
T Consensus 81 lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~K-----------lGG~n~~l~~- 147 (437)
T 2yhb_A 81 FVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLK-----------FGGTNHNIKT- 147 (437)
T ss_dssp EEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHH-----------TTCBCCCCSS-
T ss_pred EEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHH-----------hCCcceeccc-
Confidence 99999998 778899999999999999999999974 56778 999999999999 9999999974
Q ss_pred ccCCCCCccCCCeEEEeeeeccCC---CC--CCCCCeEEEEEecccccCCCccceeeeEEEecC-CccccccccCCCCC
Q 036169 538 QSKNLPLVSKVPTIIFGMDVSHGS---PG--HSNVPSVATVGCNSFSRNWPILSRYRASVRSQS-AKLEMTDSLFKPLP 610 (619)
Q Consensus 538 ~~~~lp~l~~~~tMiiG~DV~Hp~---~g--~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~-~~~Eii~~l~~~~~ 610 (619)
.+|++.+.+|||||+||+||+ || ....||||||| ||+| +.+++|.+.+++|. +++|+|++|.+|+.
T Consensus 148 ---~~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~v---aS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~~~~~ 219 (437)
T 2yhb_A 148 ---PIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLV---STID-QHLGQWPAMVWNNPHGQESMTEQFTDKFK 219 (437)
T ss_dssp ---CCHHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEE---ECCS-TTCCCCCEEEEEETTTHHHHHHHHHHHHH
T ss_pred ---cccccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEE---EecC-CCcCeeeeEEEEcCCcchhHHHHHHHHHH
Confidence 256566689999999999999 77 33589999999 9999 69999999999999 99999999998874
No 8
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.94 E-value=1.8e-27 Score=219.33 Aligned_cols=131 Identities=21% Similarity=0.362 Sum_probs=93.1
Q ss_pred ecCCcHHHHHHHhcCCC---C--chhhhHHHHHHHhcCcEEEEee------cCceEEEeccCccCcccceeeccCCCCCC
Q 036169 198 IKPGPLVDFLIANQNVH---D--CYQLHWAKAKRTLKNLRIRVHP------FNREYRITGLSDSTCKRQMFSWKSGVKDR 266 (619)
Q Consensus 198 ~~~~~l~d~i~~~~~~~---~--~~~~~~~~l~~~Lkgl~V~~~~------~~r~~~I~~i~~~~a~~~~F~~~~~~~~g 266 (619)
+++++|+|||.++.+.. + ..+.++.+++++|+|++|.++| ++|+|+|.||++.+|++.+|+.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCC-----
Confidence 46899999999987321 1 1233567799999999999999 578999999999999999998642
Q ss_pred CCCccceEEeHHHHHHHhcCCccccCCCccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCC
Q 036169 267 NGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQK 341 (619)
Q Consensus 267 ~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~ 341 (619)
+++||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+++++|++.|+++||++||.+
T Consensus 77 ------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 ------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp ------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred ------CEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhcC
Confidence 689999999998 999999 9999999999889999999999999999999999999999999999863
No 9
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.92 E-value=6.7e-25 Score=201.29 Aligned_cols=120 Identities=34% Similarity=0.596 Sum_probs=107.1
Q ss_pred ccEeeeccccceEEEEEeCCc---hhHHHHHHHHHHHHHhcCCcC------------hHhHHHHHHHHHHhccCCCeEEE
Q 036169 401 NKIFVQAAKIDHWAVVNFSAR---YDIRSLCRDLIRFGEMKGIVT------------PVRADRMFVQMKQKFEKCPCFLL 465 (619)
Q Consensus 401 ~~kf~~~a~i~~w~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i------------~~~~~~~~~~l~~~~~~~~~lv~ 465 (619)
+++|++|+++++|++++++++ .+++.|++.|.+.|+.+||.+ +++++++++++.+.. .+++|++
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~-~~~qlv~ 80 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA-PGLQLLI 80 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC-TTCSEEE
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc-CCCcEEE
Confidence 578999999999999999632 479999999999999999987 246788899888866 4699999
Q ss_pred EEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHHHHHHHHHHHHhcCcccccCccccCCCccccc
Q 036169 466 CLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLL 534 (619)
Q Consensus 466 ~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l 534 (619)
||||+ ++.+ |+.||++||+++||+|||++.+ |.++||++||+||||+| |||+||.|
T Consensus 81 ~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~K-----------lGG~N~~l 139 (139)
T 4g0o_A 81 VILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVK-----------TGGRNTVL 139 (139)
T ss_dssp EECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHH-----------TTCEEEEC
T ss_pred EEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhh-----------hCcccCcC
Confidence 99999 6667 9999999999999999999984 67899999999999999 99999975
No 10
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.91 E-value=3.4e-25 Score=205.59 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=94.6
Q ss_pred CCcHHHHHHHhcCCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHH
Q 036169 200 PGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFD 279 (619)
Q Consensus 200 ~~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~ 279 (619)
++||+|+|.++++.+ ..+..+.++.+.|+|++|.+.|+||+|+|.+|+++++++++|+.++ +..+||+|
T Consensus 2 ~~tvld~~~~~~~~~-~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~----------g~~~T~~e 70 (150)
T 2xfm_A 2 SETVLDFMFNLYQQT-EEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKAD----------GSEVSFLE 70 (150)
T ss_dssp CCBHHHHHHHHHHHS-CHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSS----------SCCCCHHH
T ss_pred CccHHHHHHHHHccc-cchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCC----------CceeeHHH
Confidence 689999999876532 1122467899999999999999999999999999999999998643 26799999
Q ss_pred HHHHhcCCccccCCCccEEEeCCCC---------CCcccccccEEEcCCCcccCcCCHHHHHH------HHHHhcCChHH
Q 036169 280 YFVNHGRINLCFSGDFPCIDVGKPR---------KPTYIPIEPCSLLSLQRYTKALTVFQRSA------LVEKSQQKPQE 344 (619)
Q Consensus 280 Yf~~~Y~i~L~~~p~lPlv~~~~~~---------k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~------mi~~~~~~P~~ 344 (619)
||+++||++|+| |+||||.+|.+. +++|||||||.|++ |+++|+++ |+++|+.+|.+
T Consensus 71 Yf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~~~t~~~P~~ 142 (150)
T 2xfm_A 71 YYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLAVHTRLTPEQ 142 (150)
T ss_dssp HHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC----------------------
T ss_pred HHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHHHHHccCHHH
Confidence 999999999999 999999998642 66999999999995 88888774 89999999999
Q ss_pred HHHHHHHH
Q 036169 345 KMKIITDV 352 (619)
Q Consensus 345 R~~~i~~~ 352 (619)
|.+.|.++
T Consensus 143 R~~~i~~f 150 (150)
T 2xfm_A 143 RQREVGRL 150 (150)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 99988754
No 11
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.91 E-value=3.1e-24 Score=198.83 Aligned_cols=122 Identities=30% Similarity=0.587 Sum_probs=104.1
Q ss_pred ccEeeeccccceEEEEEeCCc---hhHHHHHHHHHHHHHhcCCcCh------------HhHHHHHHHHHH----hc--cC
Q 036169 401 NKIFVQAAKIDHWAVVNFSAR---YDIRSLCRDLIRFGEMKGIVTP------------VRADRMFVQMKQ----KF--EK 459 (619)
Q Consensus 401 ~~kf~~~a~i~~w~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~------------~~~~~~~~~l~~----~~--~~ 459 (619)
+++|++|+++++|+++++++. ..++.|++.|.+.|+.+||.++ +++++.++++.+ ++ +.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 468999999999999999864 3688899999999999999872 345555554433 22 25
Q ss_pred CCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHHHHHHHHHHHHhcCcccccCccccCCCccccc
Q 036169 460 CPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLL 534 (619)
Q Consensus 460 ~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l 534 (619)
+++||+||||+ +++++|+.||++||+++||+|||+..+ |.++||++||+||||+| |||+||.|
T Consensus 82 ~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~K-----------lGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVK-----------VGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHH-----------TTCEECCC
T ss_pred CCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHh-----------hCcccccC
Confidence 78999999999 778999999999999999999999984 57899999999999999 99999975
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.90 E-value=7.6e-24 Score=194.11 Aligned_cols=118 Identities=26% Similarity=0.499 Sum_probs=103.1
Q ss_pred cccEeeeccccceEEEEEeCCc-----hhHHHHHHHHHHHHHhcCCcCh------------HhHHHHHHHHHHhccCCCe
Q 036169 400 HNKIFVQAAKIDHWAVVNFSAR-----YDIRSLCRDLIRFGEMKGIVTP------------VRADRMFVQMKQKFEKCPC 462 (619)
Q Consensus 400 ~~~kf~~~a~i~~w~vv~~~~~-----~~~~~f~~~l~~~~~~~G~~i~------------~~~~~~~~~l~~~~~~~~~ 462 (619)
++++|++|+++++|++++++.. ..+++|++.|.+.|+.+||.++ ++++++|+++++.. .+++
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~-~~~q 79 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY-AGLQ 79 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC-TTCC
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC-CCCc
Confidence 3578999999999999998731 3699999999999999999882 46889999998765 4689
Q ss_pred EEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHHHHHHHHHHHHhcCcccccCccccCCCcc
Q 036169 463 FLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEHDLMNVLLKINANCQRELTDPLILLGGLN 531 (619)
Q Consensus 463 lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n 531 (619)
||+||||+ +++.|+.||++||+++||+|||++.+ |.++||++||+||||+| |||+|
T Consensus 80 lv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~K-----------lGG~N 138 (138)
T 3luc_A 80 LVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVK-----------LGGVN 138 (138)
T ss_dssp EEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHH-----------HSCC-
T ss_pred EEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhc-----------cCCcC
Confidence 99999997 47999999999999999999999874 67899999999999999 99997
No 13
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.89 E-value=7.2e-24 Score=195.07 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCcHHHHHHHhcCCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHH
Q 036169 200 PGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFD 279 (619)
Q Consensus 200 ~~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~ 279 (619)
..+++|+|.++... + ....+.++.+.|+|+.|.+.|+++.|+|.||+|+.++.++|+.++ |..+||+|
T Consensus 2 ~~tvld~m~~~~~~-~-~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~d----------g~~iT~~e 69 (148)
T 3qir_A 2 NDCVLDVMHAIYQQ-N-KEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSD----------GKEITFLE 69 (148)
T ss_dssp CCCHHHHHHHHHHH-H-HHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTT----------SCEEEHHH
T ss_pred cchHHHHHHHHHhh-C-cHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCC----------CCcccHHH
Confidence 47899999886532 1 122567899999999999999999999999999999999998754 26899999
Q ss_pred HHHHhcCCccccCCCccEEEeCCCC----------CCcccccccEEEcCCCcccCcCCHHHHH------HHHHHhcCChH
Q 036169 280 YFVNHGRINLCFSGDFPCIDVGKPR----------KPTYIPIEPCSLLSLQRYTKALTVFQRS------ALVEKSQQKPQ 343 (619)
Q Consensus 280 Yf~~~Y~i~L~~~p~lPlv~~~~~~----------k~~y~P~Elc~i~~~Q~~~~~l~~~~~~------~mi~~~~~~P~ 343 (619)
||+++||+.|+| |+||||+++.++ +++|||||||.+++ |++++++ +|.++++..|.
T Consensus 70 Yf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l~~~tr~~P~ 141 (148)
T 3qir_A 70 YYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDLAQQINLSPK 141 (148)
T ss_dssp HHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC--------------------------------
T ss_pred HHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHHHHHHCCCHH
Confidence 999999999999 999999998643 57999999999996 7777766 79999999999
Q ss_pred HHHHHHH
Q 036169 344 EKMKIIT 350 (619)
Q Consensus 344 ~R~~~i~ 350 (619)
+|.+.++
T Consensus 142 ~R~~~l~ 148 (148)
T 3qir_A 142 QHHSALE 148 (148)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 9998753
No 14
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.89 E-value=1.6e-23 Score=194.69 Aligned_cols=121 Identities=27% Similarity=0.415 Sum_probs=89.5
Q ss_pred ccEeeeccccceEEEEEeCCc----hhHHHHHHHHHHHHHhcCCcCh----------------Hh----HHHHHHHHHHh
Q 036169 401 NKIFVQAAKIDHWAVVNFSAR----YDIRSLCRDLIRFGEMKGIVTP----------------VR----ADRMFVQMKQK 456 (619)
Q Consensus 401 ~~kf~~~a~i~~w~vv~~~~~----~~~~~f~~~l~~~~~~~G~~i~----------------~~----~~~~~~~l~~~ 456 (619)
+++|++|+++++|+++++++. .++++|++.|.+.|+.+||.++ ++ +++++++++++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 468999999999999999754 2688999999999999999872 12 23344555555
Q ss_pred cc-CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecc---ccCCHHHHHHHHHHHHhcCcccccCccccCCCccc
Q 036169 457 FE-KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAP---TKVNEHDLMNVLLKINANCQRELTDPLILLGGLNS 532 (619)
Q Consensus 457 ~~-~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~---~k~~~q~~~NI~lKiN~K~~~~~~~~~~~lGG~n~ 532 (619)
.+ ..|+|++||||+ ++ +.|+.||++||+++||+|||+.. .|.++||++||+||||+| |||+||
T Consensus 82 ~~~~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~K-----------lGG~n~ 148 (150)
T 4g0m_A 82 HGGARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAK-----------VGGSNV 148 (150)
T ss_dssp TTTCCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHH-----------C-----
T ss_pred cCCCCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhc-----------cCCccC
Confidence 43 367999999999 65 45999999999999999999997 467899999999999999 999999
Q ss_pred cc
Q 036169 533 LL 534 (619)
Q Consensus 533 ~l 534 (619)
.|
T Consensus 149 ~l 150 (150)
T 4g0m_A 149 EL 150 (150)
T ss_dssp --
T ss_pred cC
Confidence 75
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.89 E-value=1.6e-23 Score=187.36 Aligned_cols=113 Identities=24% Similarity=0.424 Sum_probs=93.0
Q ss_pred cCCcHHHHHHHhcCCCCc-----hhhhHHHHHHHhcCcEEEEee------cCceEEEeccCccCcccceeeccCCCCCCC
Q 036169 199 KPGPLVDFLIANQNVHDC-----YQLHWAKAKRTLKNLRIRVHP------FNREYRITGLSDSTCKRQMFSWKSGVKDRN 267 (619)
Q Consensus 199 ~~~~l~d~i~~~~~~~~~-----~~~~~~~l~~~Lkgl~V~~~~------~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~ 267 (619)
+++||+|||.++....+. -+.++.+++++|+|++|.++| .+|+|+|.||++.+|++++|+.++
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~g------ 74 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG------ 74 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESSS------
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeCC------
Confidence 368999999997642211 123578999999999999998 358999999999999999998742
Q ss_pred CCccceEEeHHHHHHHhcCCccccCCCccEEEeCCCCCCcccccccEEEcCCCcccC
Q 036169 268 GDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTK 324 (619)
Q Consensus 268 ~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~ 324 (619)
..+||+|||+++ |++|+| |+||||++|+..+++|||||+|.|+|||++++
T Consensus 75 -----~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 75 -----KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp -----SEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred -----cEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 689999999997 999999 99999999998899999999999999999863
No 16
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.85 E-value=1.2e-21 Score=174.68 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=93.3
Q ss_pred CcHHHHHHHhcCCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHH
Q 036169 201 GPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDY 280 (619)
Q Consensus 201 ~~l~d~i~~~~~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Y 280 (619)
.+++|+|.++....+ ....+.++.+.|+|+.|.+.|+|+.|+|.+|+|+.++.++|+.++ |..+||+||
T Consensus 2 ~tvld~~~~~~~~~~-~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~d----------g~~~T~~eY 70 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTE-EHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKAD----------GSEVSFLEY 70 (124)
T ss_dssp CBHHHHHHHSCCCSS-HHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTT----------SCEEEHHHH
T ss_pred ccHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCC----------CCeeeHHHH
Confidence 689999998764322 223577899999999999999999999999999999999998754 268999999
Q ss_pred HHHhcCCccccCCCccEEEeCCCC---------CCcccccccEEEcCCCcccCcCCHHHHHH
Q 036169 281 FVNHGRINLCFSGDFPCIDVGKPR---------KPTYIPIEPCSLLSLQRYTKALTVFQRSA 333 (619)
Q Consensus 281 f~~~Y~i~L~~~p~lPlv~~~~~~---------k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~ 333 (619)
|+++||++|++ |+||||.++.++ +++|||||||.+++ |+++++++
T Consensus 71 yk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~d 124 (124)
T 3o7v_X 71 YRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRND 124 (124)
T ss_dssp HHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC------
T ss_pred HHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhccC
Confidence 99999999999 999999998543 57999999999997 88888753
No 17
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.81 E-value=1.3e-20 Score=209.22 Aligned_cols=124 Identities=25% Similarity=0.423 Sum_probs=100.0
Q ss_pred ecceeeeecCCcHHHHHHHhc---CCCCchhhhH--HHHHHHhcCcEEEEee------cCceEEEeccCccCcccceeec
Q 036169 191 DGSTTSIIKPGPLVDFLIANQ---NVHDCYQLHW--AKAKRTLKNLRIRVHP------FNREYRITGLSDSTCKRQMFSW 259 (619)
Q Consensus 191 D~s~~~f~~~~~l~d~i~~~~---~~~~~~~~~~--~~l~~~Lkgl~V~~~~------~~r~~~I~~i~~~~a~~~~F~~ 259 (619)
+...+.|+++++|+|++.+++ +.+++...++ .++.+.||||+|+++| .+|.|+|.||+..+|.+.+|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 344667999999999999975 3344444444 4599999999999999 4688999999999999999988
Q ss_pred cCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeCCCCCCcccccccEEEcCCCcccCcCC
Q 036169 260 KSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALT 327 (619)
Q Consensus 260 ~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~ 327 (619)
++ ++|||+|||+ +||++|+| |+||||++|+.++++|||||||.|++||||+.||+
T Consensus 455 ~~-----------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG-----------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT-----------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC-----------eEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 64 7999999999 79999999 99999999998899999999999999999998875
No 18
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.69 E-value=1.9e-18 Score=186.71 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=111.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHHHH---hcCCcC--h-Hh----HHHHHHHHHHhccCCCeEEEEEc--------CCCC
Q 036169 411 DHWAVVNFSARYDIRSLCRDLIRFGE---MKGIVT--P-VR----ADRMFVQMKQKFEKCPCFLLCLL--------PDKK 472 (619)
Q Consensus 411 ~~w~vv~~~~~~~~~~f~~~l~~~~~---~~G~~i--~-~~----~~~~~~~l~~~~~~~~~lv~~il--------p~~k 472 (619)
.+|+||+..+..+ |++.|.+... ..++.+ . ++ ++.+.+.+++ +++++|||+ |+ +
T Consensus 47 ~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~~~~~~~~~~y~~~i~~~l~~----~~~lvlvilp~~~~~~~~~-~ 118 (427)
T 2w42_A 47 NQIALIHNNQFSS---LINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKS----QVDNAIDTGVDGIMLVLPE-Y 118 (427)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCCCSCEEEEEECSSSSHHHHHH----HHHHHHHHCCSEEEEEESS-C
T ss_pred CEEEEEECcccHH---HHHHHHHhhhhcCCCceeecCCcCChHHHHHHHHHHhcC----CCCEEEEEEEccccccCCC-C
Confidence 7899999876533 6666655433 233433 1 11 1122233433 478999999 66 5
Q ss_pred CchhHHHHhhhhccccCceeeEecccc---CCHH-HHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCC
Q 036169 473 DSDLYGSWKRKTLSEFGIFNQCLAPTK---VNEH-DLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKV 548 (619)
Q Consensus 473 ~~~~Y~~iK~~~~~~~gV~TQcv~~~k---~~~q-~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~ 548 (619)
+...|. +|+ +..+.||+||||..++ .+.+ ++.||++|||+| |||+||.|+.. |.+ .
T Consensus 119 ~~~~y~-~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~K-----------lGG~pW~l~~~-----~~~--~ 178 (427)
T 2w42_A 119 NTPLYY-KLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSK-----------LGGKPWILNVD-----PEK--G 178 (427)
T ss_dssp CHHHHH-HHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHH-----------TTCBCCEECCC-----TTS--S
T ss_pred CcchHH-HHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHH-----------hCCcceecccC-----CCC--C
Confidence 445565 787 5579999999999853 3444 489999999999 99999999741 222 5
Q ss_pred CeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccceeeeEEEecCCccccccccCCCCC
Q 036169 549 PTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLP 610 (619)
Q Consensus 549 ~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~~y~~~~~~Q~~~~Eii~~l~~~~~ 610 (619)
+|||||+||+|++++ +++|++ -++|.| ..-+...+..|.+++|++++|..|+.
T Consensus 179 ~~miiGidv~h~~~~-----~v~g~a-~v~~~~---g~~~~~~~~~~~~~~E~~~~l~~~l~ 231 (427)
T 2w42_A 179 SDIIIGTGATRIDNV-----NLFCFA-MVFKKD---GTMLWNEISPIVTSSEYLTYLKSTIK 231 (427)
T ss_dssp CSEEEEEEEEESSSS-----EEEEEE-EEECTT---SCEEEEEECCCEEGGGHHHHHHHHHH
T ss_pred CeEEEEEEEEEcCCC-----cEEEEE-EEEcCC---CCEEEEEEEecCChhHHHHHHHHHHH
Confidence 799999999999865 677774 004555 33345566667788999999988764
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.84 E-value=1.9e-09 Score=123.22 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=73.2
Q ss_pred HHHHHhcCcEEEEeecC-ceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeC
Q 036169 223 KAKRTLKNLRIRVHPFN-REYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVG 301 (619)
Q Consensus 223 ~l~~~Lkgl~V~~~~~~-r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~ 301 (619)
.+.+.|+|..|.+.|+| |.|+|.+|+++..+.++|+.++ +.+|+.|||+++||++|++ ++||+|.++
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~-----------~~~Ty~dYYk~ky~i~I~d-~~QPLL~~~ 218 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN-----------ESITYMRYYATAHNIHLRA-ADLPLVAAV 218 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT-----------EEEEHHHHHHHTTCCCCSC-TTSEEEEEE
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC-----------CCCCHHHHHHHHcCccccc-CCCCeEEEE
Confidence 45678999999999999 9999999999999999998643 6899999999999999998 999999875
Q ss_pred CC------------------CCCcccccccEEEcC
Q 036169 302 KP------------------RKPTYIPIEPCSLLS 318 (619)
Q Consensus 302 ~~------------------~k~~y~P~Elc~i~~ 318 (619)
.. .+.+++|||||.+++
T Consensus 219 ~~~~~~~~r~~~~~~~~~~~~~~v~L~PELC~vt~ 253 (756)
T 2qvw_A 219 RLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLP 253 (756)
T ss_dssp ETTTTTTCCCCSTTC-CCSCSSCEEECTTTCEECC
T ss_pred ecccccccccccccccccCCccceeeCHHHheeec
Confidence 31 124799999999986
No 20
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.18 E-value=39 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=37.2
Q ss_pred EEEEEeCCchhHHHHHHHHHHHHHhcCCcC-----hHhHHHHHHHHHHhccCCCeEEEEEcCC
Q 036169 413 WAVVNFSARYDIRSLCRDLIRFGEMKGIVT-----PVRADRMFVQMKQKFEKCPCFLLCLLPD 470 (619)
Q Consensus 413 w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i-----~~~~~~~~~~l~~~~~~~~~lv~~ilp~ 470 (619)
..+++|+.+. +-.+.|.+..++.|+.+ |..+.+.+++|.+++ +..++++++.+
T Consensus 3 ivivvfstde---etlrkfkdiikkngfkvrtvrspqelkdsieelvkky--nativvvvvdd 60 (134)
T 2l69_A 3 IVIVVFSTDE---ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKY--NATIVVVVVDD 60 (134)
T ss_dssp EEEEECCCCH---HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCC--CCEEEEEECSS
T ss_pred EEEEEEeCCH---HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHh--CCeEEEEEEcc
Confidence 4566676543 33455666667788877 667888888888876 46888888866
No 21
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=39.70 E-value=56 Score=32.80 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=48.1
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEecccc-CCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k-~~~q~~~NI~lKiN~K 515 (619)
+++++++.+..|.|.+++.-+...+..|-..|.....+.||.+..+.... ....-+-+.+.++|.-
T Consensus 43 v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 43 VEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Confidence 34555554456889888886634578999999888889999999887743 4455566777788864
No 22
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=28.96 E-value=1.1e+02 Score=30.55 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=48.4
Q ss_pred HHHHHHHHhcc-CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 448 RMFVQMKQKFE-KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 448 ~~~~~l~~~~~-~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+-+++++++.+ ..|.|.++..-+...+..|-..|.....+.||.+..+... .....-+-+.+.+.|.-
T Consensus 24 ~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 24 DKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 33445555533 4689999888763457899999988888999999888763 33445566777888854
No 23
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=26.94 E-value=1.3e+02 Score=29.95 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++....|.|.+++.-+...+..|-..|.....+.||.+..+... .....-+.+.+.+.|.-
T Consensus 25 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 91 (286)
T 4a5o_A 25 VTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDD 91 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445444334588998888763457899988888888999999888763 33445566777888864
No 24
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=26.89 E-value=1.2e+02 Score=30.43 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=48.9
Q ss_pred HHHHHHHHhc-cCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 448 RMFVQMKQKF-EKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 448 ~~~~~l~~~~-~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+-+++++++. +..|.|.++..-+...+..|-..|.....+.||.+..+... .....-+...+.++|.-
T Consensus 22 ~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 22 NQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3344555553 13489999888764567899999888888999999988764 34455567788899865
No 25
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=25.46 E-value=1.2e+02 Score=30.01 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++....|.|.++..-+...+..|-..|.....+.||.+..+... .....-+-..+.+.|.-
T Consensus 24 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 90 (285)
T 3l07_A 24 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 90 (285)
T ss_dssp HHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445544334688998888763457899988888888999999888764 33445566777888854
No 26
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=23.71 E-value=1.2e+02 Score=30.15 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 449 MFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 449 ~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
-+++++++....|.|.++..-+...+..|-..|.....+.||.+...... .....-+...+.++|.-
T Consensus 22 ~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 22 KVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34445544323489998888763457899988888888999999988764 33455566788888865
No 27
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=22.06 E-value=1.6e+02 Score=29.15 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++ +..|.|.++..-+...+..|-..|.....+.||.+..+... .....-+.+.+.++|.-
T Consensus 23 v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 23 VAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3445444 23488998888663457899988888788999999988764 34455566788888865
No 28
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=21.71 E-value=1.5e+02 Score=29.45 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc-cCCHHHHHHHHHHHHhc
Q 036169 450 FVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEHDLMNVLLKINAN 515 (619)
Q Consensus 450 ~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~-k~~~q~~~NI~lKiN~K 515 (619)
+++++++. ..|.|.++..-+...+..|-..|.....+.||.+..+... .....-+...+.+.|.-
T Consensus 24 v~~l~~~~-~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 89 (285)
T 3p2o_A 24 NQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHD 89 (285)
T ss_dssp HHHHHTTT-CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHhcC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444443 3688988888663457899999888888999999888764 33445566777888853
No 29
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=20.31 E-value=1.5e+02 Score=29.93 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=46.1
Q ss_pred HHHHHHHHhcc-CCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccccCCHHHHHHHHHHHHhc
Q 036169 448 RMFVQMKQKFE-KCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINAN 515 (619)
Q Consensus 448 ~~~~~l~~~~~-~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k~~~q~~~NI~lKiN~K 515 (619)
+-+++++++.. ..|.|+++..-+...+..|-..|...+.+.||.+..+..... .-+.+.+.++|.-
T Consensus 23 ~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~l~~~i~~lN~d 89 (320)
T 1edz_A 23 NNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK--DFLEEAIIQANGD 89 (320)
T ss_dssp HHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG--GGHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh--HHHHHHHHHHcCC
Confidence 33445554422 348899888876345789999998888899999988876432 4355677888855
Done!