BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036170
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 40/246 (16%)
Query: 33 FRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT 92
F DLGCS+G NT + I++ I K F A+ +P EF FF+D P N+FNTLF+
Sbjct: 54 FTAVDLGCSSGANTVHIIDFIVKHIS-KRFDAAGIDPP--EFTAFFSDLPSNDFNTLFQL 110
Query: 93 LP---------------HSRKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEI 137
LP +R YF AGVPG F RLFP T+ HS+F+LHW+S++PE +
Sbjct: 111 LPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESV 170
Query: 138 AGGKSLAWNKESIQGKRFVKEVAE----AYSTQFKKDIESFLNARAQELVAGGLM----- 188
+S A+N+ G+ F+ E AY QF+ D+ FL ARA E+ GG M
Sbjct: 171 TDRRSAAYNR----GRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL 226
Query: 189 --------SQTTFGIFFDV-FGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKT 239
Q G+ F F D+ + G+ + EK D FNIP + P+ ++ + ++
Sbjct: 227 GRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDA 286
Query: 240 NKYFTI 245
N F I
Sbjct: 287 NGSFAI 292
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 25/234 (10%)
Query: 29 TSSTFRVADLGCSTGPNTFIAMQNIIEAIE-LKLFQASHKNPATVEFQVFFNDHPENNFN 87
++ +ADLGCS+GPN A+ +I+ +E L+ +P E+Q+F ND P N+FN
Sbjct: 49 VTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSP---EYQIFLNDLPGNDFN 105
Query: 88 TLFKTLPHSRKY----FAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSL 143
+F++LP F GVPG F RLFP +TLH +HSS++L W+S++P I K
Sbjct: 106 AIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGN 165
Query: 144 AWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMSQTTFG--------- 194
+ + + V AY QF++D FL RAQE+V GG M T G
Sbjct: 166 IYMANTCP-----QSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST 220
Query: 195 ---IFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKYFTI 245
+ + + L M G+ EK+D FNIP + P+P E+E+ I F I
Sbjct: 221 ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLI 274
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 24/236 (10%)
Query: 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK 91
F+V DLGC++GPNTF +++I+++I+ K+ Q Q+F ND +N+FN++FK
Sbjct: 53 CFKVGDLGCASGPNTFSTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFQNDFNSVFK 111
Query: 92 TLP---------HSRKY---FAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAG 139
LP + RK +PG F RLFP ++H +HS + LHW+S++P +
Sbjct: 112 LLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVT 171
Query: 140 GKSLAWNKESIQGKRFVK-EVAEAYSTQFKKDIESFLNARAQELVAGGLMSQTTFGIFFD 198
++ NK I + + + +AY QF KD +FL ++EL++ G M TF D
Sbjct: 172 ELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRM-LLTFICKED 230
Query: 199 VFG-SCLMDMAKMGITS--------NEKIDSFNIPNHHPTPKELESIIKTNKYFTI 245
F MD+ +M I EK+DSFN+P + P+ +E++ I++ F I
Sbjct: 231 EFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEI 286
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK 91
+VADLGC++GPNT + +++I+++I+ K+ Q Q+F ND N+FN++FK
Sbjct: 54 CIKVADLGCASGPNTLLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFK 112
Query: 92 TLP---------HSRKY---FAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAG 139
LP + RK +PG F RLFP ++H +HS + L W+S++P +
Sbjct: 113 LLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVT 172
Query: 140 GKSLAWNKESIQGKRFVK-EVAEAYSTQFKKDIESFLNARAQELVAGGLMSQTTFGIFFD 198
+ NK SI + + V +AY QF KD +FL ++EL + G M T +
Sbjct: 173 ELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVE 232
Query: 199 VFGSCLMDMAKMGITS--------NEKIDSFNIPNHHPTPKELESIIKTNKYFTI 245
+ +D+ +M I EK+DSFN+P + P+ +E++ I++ F I
Sbjct: 233 LDARNAIDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEI 287
>pdb|2GFB|B Chain B, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|D Chain D, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|F Chain F, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|H Chain H, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|J Chain J, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|L Chain L, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|N Chain N, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|P Chain P, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
Length = 219
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 123 SSFALHWISKIPEE-------IAGGKSLAWNKESIQGK 153
SSF +HW+ + PE+ I+ G S + ++++G+
Sbjct: 30 SSFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGR 67
>pdb|1KNO|B Chain B, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|D Chain D, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|F Chain F, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 220
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 123 SSFALHWISKIPEE-------IAGGKSLAWNKESIQGK 153
SSF +HW+ + PE+ I+ G S + ++++G+
Sbjct: 30 SSFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGR 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,718,479
Number of Sequences: 62578
Number of extensions: 256868
Number of successful extensions: 620
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 7
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)