Query 036170
Match_columns 245
No_of_seqs 127 out of 470
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 9E-83 1.9E-87 595.8 23.6 238 1-245 37-304 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.4E-83 3.1E-88 594.0 18.0 228 12-245 1-248 (334)
3 TIGR02072 BioC biotin biosynth 98.3 8.7E-06 1.9E-10 69.8 11.3 152 30-242 33-198 (240)
4 TIGR00740 methyltransferase, p 98.1 7.7E-05 1.7E-09 65.4 13.2 152 32-241 54-219 (239)
5 PRK01683 trans-aconitate 2-met 98.0 0.00017 3.7E-09 63.7 13.6 146 31-242 31-180 (258)
6 PRK14103 trans-aconitate 2-met 98.0 5.2E-05 1.1E-09 67.2 9.9 145 30-241 28-176 (255)
7 PRK15451 tRNA cmo(5)U34 methyl 97.8 0.00068 1.5E-08 60.0 14.0 90 117-242 125-223 (247)
8 TIGR02752 MenG_heptapren 2-hep 97.7 0.00029 6.2E-09 61.0 9.8 80 32-131 46-128 (231)
9 PRK10258 biotin biosynthesis p 97.7 0.00039 8.5E-09 61.2 10.5 77 31-132 42-118 (251)
10 PLN02233 ubiquinone biosynthes 97.6 0.0011 2.4E-08 59.3 11.7 18 113-130 141-158 (261)
11 PTZ00098 phosphoethanolamine N 97.5 0.00098 2.1E-08 59.8 10.6 141 31-242 52-195 (263)
12 PRK15068 tRNA mo(5)U34 methylt 97.5 0.00025 5.5E-09 65.6 6.7 134 33-241 124-266 (322)
13 PRK11036 putative S-adenosyl-L 97.5 0.0031 6.8E-08 55.9 13.2 146 31-241 44-199 (255)
14 PLN02244 tocopherol O-methyltr 97.4 0.008 1.7E-07 55.9 15.6 23 108-130 177-199 (340)
15 PF08241 Methyltransf_11: Meth 97.3 0.00088 1.9E-08 48.7 6.8 93 36-188 1-93 (95)
16 PF12847 Methyltransf_18: Meth 97.3 0.0017 3.8E-08 49.3 8.6 90 33-188 3-107 (112)
17 COG2226 UbiE Methylase involve 97.3 0.0041 8.9E-08 55.6 12.0 86 31-134 51-136 (238)
18 smart00828 PKS_MT Methyltransf 97.1 0.0016 3.6E-08 56.0 6.9 71 116-241 66-136 (224)
19 TIGR00477 tehB tellurite resis 97.1 0.0042 9.1E-08 53.1 9.3 19 32-50 31-49 (195)
20 PF13847 Methyltransf_31: Meth 97.0 0.0047 1E-07 50.2 8.7 21 31-51 3-23 (152)
21 TIGR01934 MenG_MenH_UbiE ubiqu 97.0 0.014 3.1E-07 49.4 11.7 101 31-188 39-139 (223)
22 PRK11207 tellurite resistance 96.9 0.0042 9.1E-08 53.2 8.2 19 32-50 31-49 (197)
23 PRK00216 ubiE ubiquinone/menaq 96.9 0.014 3.1E-07 49.9 11.6 81 32-131 52-135 (239)
24 PRK06922 hypothetical protein; 96.9 0.0029 6.3E-08 63.9 8.1 51 112-188 482-533 (677)
25 PRK12335 tellurite resistance 96.9 0.0043 9.3E-08 56.2 8.2 38 115-188 182-219 (287)
26 PLN02396 hexaprenyldihydroxybe 96.9 0.0081 1.8E-07 55.9 10.1 87 113-242 194-282 (322)
27 TIGR02021 BchM-ChlM magnesium 96.8 0.06 1.3E-06 46.4 14.7 19 223-241 180-198 (219)
28 PF08242 Methyltransf_12: Meth 96.8 0.00045 9.8E-09 51.9 1.0 96 36-188 1-99 (99)
29 PLN02490 MPBQ/MSBQ methyltrans 96.8 0.016 3.6E-07 54.3 11.5 78 32-130 114-191 (340)
30 PRK06202 hypothetical protein; 96.8 0.024 5.1E-07 49.4 11.7 85 30-132 59-144 (232)
31 PRK00121 trmB tRNA (guanine-N( 96.7 0.03 6.4E-07 48.2 11.6 132 31-215 40-177 (202)
32 TIGR00452 methyltransferase, p 96.6 0.02 4.3E-07 53.1 10.2 82 111-242 182-266 (314)
33 PF13489 Methyltransf_23: Meth 96.6 0.0016 3.6E-08 52.2 2.6 133 30-242 21-156 (161)
34 TIGR02716 C20_methyl_CrtF C-20 96.5 0.053 1.1E-06 49.3 12.4 143 31-242 149-299 (306)
35 PRK07580 Mg-protoporphyrin IX 96.5 0.092 2E-06 45.0 13.2 20 31-50 63-82 (230)
36 PLN02336 phosphoethanolamine N 96.5 0.0079 1.7E-07 58.0 7.1 81 31-131 266-346 (475)
37 smart00138 MeTrc Methyltransfe 96.4 0.02 4.3E-07 51.6 9.1 19 113-131 199-217 (264)
38 KOG2940 Predicted methyltransf 96.4 0.014 3.1E-07 52.4 7.8 75 32-136 73-156 (325)
39 PLN02336 phosphoethanolamine N 96.3 0.022 4.8E-07 54.8 9.4 40 113-188 99-138 (475)
40 PF03848 TehB: Tellurite resis 96.1 0.028 6E-07 48.8 7.8 87 32-188 31-129 (192)
41 TIGR00138 gidB 16S rRNA methyl 95.9 0.22 4.8E-06 42.3 12.7 44 179-224 129-173 (181)
42 PRK08317 hypothetical protein; 95.9 0.06 1.3E-06 45.7 8.9 82 31-132 19-102 (241)
43 PF01209 Ubie_methyltran: ubiE 95.8 0.016 3.4E-07 51.4 5.2 150 31-241 47-212 (233)
44 PF13649 Methyltransf_25: Meth 95.8 0.02 4.3E-07 43.2 5.0 18 35-52 1-18 (101)
45 TIGR03438 probable methyltrans 95.6 0.1 2.3E-06 47.6 10.0 39 9-53 47-85 (301)
46 COG4123 Predicted O-methyltran 95.4 0.079 1.7E-06 47.7 8.2 110 30-188 43-166 (248)
47 PRK11188 rrmJ 23S rRNA methylt 95.4 0.11 2.3E-06 45.2 8.7 102 32-188 52-161 (209)
48 TIGR01983 UbiG ubiquinone bios 95.1 0.41 8.9E-06 40.9 11.5 19 31-49 45-63 (224)
49 cd02440 AdoMet_MTases S-adenos 95.0 0.081 1.8E-06 37.5 6.0 76 34-130 1-79 (107)
50 TIGR00091 tRNA (guanine-N(7)-) 94.7 0.38 8.2E-06 40.9 10.2 20 111-130 81-100 (194)
51 KOG2361 Predicted methyltransf 94.7 0.31 6.8E-06 43.9 9.8 174 8-242 53-230 (264)
52 PLN02232 ubiquinone biosynthes 94.6 0.11 2.3E-06 43.1 6.4 18 113-130 40-57 (160)
53 PRK14121 tRNA (guanine-N(7)-)- 94.6 0.28 6.1E-06 46.9 10.0 46 111-188 186-231 (390)
54 PTZ00146 fibrillarin; Provisio 94.5 0.34 7.3E-06 44.7 10.0 40 9-52 114-153 (293)
55 COG4106 Tam Trans-aconitate me 94.5 0.071 1.5E-06 47.5 5.2 25 110-134 85-109 (257)
56 PLN02585 magnesium protoporphy 94.4 0.68 1.5E-05 43.0 11.8 20 32-51 145-164 (315)
57 PRK00107 gidB 16S rRNA methylt 94.4 0.48 1E-05 40.6 10.1 39 8-50 25-64 (187)
58 PRK11873 arsM arsenite S-adeno 94.3 0.093 2E-06 46.7 5.8 25 106-130 135-159 (272)
59 TIGR03587 Pse_Me-ase pseudamin 94.2 0.25 5.4E-06 42.7 8.1 76 31-131 43-119 (204)
60 KOG3010 Methyltransferase [Gen 94.2 0.074 1.6E-06 47.9 4.8 36 114-188 97-132 (261)
61 PF00891 Methyltransf_2: O-met 94.2 0.46 1E-05 41.4 9.7 94 31-188 100-195 (241)
62 PRK05134 bifunctional 3-demeth 93.9 3.3 7.2E-05 35.6 14.5 17 226-242 182-198 (233)
63 TIGR03533 L3_gln_methyl protei 93.6 0.87 1.9E-05 41.4 10.8 20 32-51 122-141 (284)
64 PRK15001 SAM-dependent 23S rib 93.6 0.58 1.3E-05 44.6 9.9 78 33-130 230-311 (378)
65 PF05401 NodS: Nodulation prot 93.4 0.42 9E-06 41.8 7.8 90 29-188 41-142 (201)
66 PRK00312 pcm protein-L-isoaspa 93.4 0.67 1.5E-05 39.7 9.2 19 31-49 78-96 (212)
67 PRK13942 protein-L-isoaspartat 93.0 0.89 1.9E-05 39.3 9.4 20 31-50 76-95 (212)
68 PF05148 Methyltransf_8: Hypot 92.9 0.072 1.6E-06 47.0 2.4 83 30-188 71-154 (219)
69 PRK11705 cyclopropane fatty ac 92.8 0.75 1.6E-05 43.7 9.4 19 32-50 168-186 (383)
70 PRK05785 hypothetical protein; 92.7 0.11 2.5E-06 45.5 3.4 76 32-134 52-127 (226)
71 KOG1540 Ubiquinone biosynthesi 92.5 0.45 9.7E-06 43.4 7.0 152 29-241 98-273 (296)
72 PRK09489 rsmC 16S ribosomal RN 92.5 0.68 1.5E-05 43.4 8.5 41 115-188 259-299 (342)
73 PRK14967 putative methyltransf 92.3 2 4.2E-05 37.2 10.7 67 170-242 137-205 (223)
74 TIGR00537 hemK_rel_arch HemK-r 92.3 1.1 2.3E-05 37.3 8.7 18 33-50 21-38 (179)
75 PRK13944 protein-L-isoaspartat 92.2 1.4 3E-05 37.9 9.5 19 32-50 73-91 (205)
76 TIGR03534 RF_mod_PrmC protein- 92.1 1.2 2.7E-05 38.4 9.3 20 169-188 194-213 (251)
77 PF02353 CMAS: Mycolic acid cy 91.6 1.9 4E-05 39.2 10.1 21 32-52 63-83 (273)
78 KOG3045 Predicted RNA methylas 90.9 0.26 5.6E-06 45.1 3.6 19 170-188 242-260 (325)
79 PRK11805 N5-glutamine S-adenos 90.7 3.4 7.3E-05 38.1 11.0 19 33-51 135-153 (307)
80 PF08003 Methyltransf_9: Prote 90.1 0.57 1.2E-05 43.6 5.3 139 33-242 117-260 (315)
81 KOG1541 Predicted protein carb 89.9 5.4 0.00012 35.9 11.0 49 113-188 108-156 (270)
82 TIGR02081 metW methionine bios 89.6 0.44 9.4E-06 40.3 3.9 20 113-132 71-90 (194)
83 PRK14902 16S rRNA methyltransf 89.6 2.7 5.9E-05 40.4 9.8 20 33-52 252-271 (444)
84 COG2518 Pcm Protein-L-isoaspar 89.0 1.2 2.6E-05 39.2 6.2 20 31-50 72-91 (209)
85 PRK09328 N5-glutamine S-adenos 88.3 3.3 7.1E-05 36.5 8.8 21 31-51 108-128 (275)
86 PRK14903 16S rRNA methyltransf 88.1 3 6.5E-05 40.2 8.9 20 33-52 239-258 (431)
87 PRK10901 16S rRNA methyltransf 87.9 4.5 9.8E-05 38.8 10.0 21 32-52 245-265 (427)
88 PF05175 MTS: Methyltransferas 87.6 3.4 7.3E-05 34.3 7.9 19 32-50 32-50 (170)
89 PF03291 Pox_MCEL: mRNA cappin 86.5 6 0.00013 37.0 9.7 40 115-188 143-182 (331)
90 PF13659 Methyltransf_26: Meth 86.2 2.5 5.3E-05 32.0 5.9 20 33-52 2-21 (117)
91 COG2230 Cfa Cyclopropane fatty 84.8 5.7 0.00012 36.5 8.5 47 31-81 72-131 (283)
92 PRK14904 16S rRNA methyltransf 84.4 8.4 0.00018 37.2 9.9 20 169-188 354-373 (445)
93 TIGR00563 rsmB ribosomal RNA s 80.5 21 0.00045 34.2 10.9 20 32-51 239-258 (426)
94 PRK00811 spermidine synthase; 79.0 13 0.00028 33.7 8.6 22 30-51 75-96 (283)
95 TIGR00446 nop2p NOL1/NOP2/sun 77.9 14 0.00031 32.9 8.4 20 32-51 72-91 (264)
96 COG5124 Protein predicted to b 76.1 1.8 4E-05 37.2 2.0 60 165-230 16-75 (209)
97 PHA03411 putative methyltransf 75.6 13 0.00028 34.1 7.5 112 33-188 66-179 (279)
98 PF03962 Mnd1: Mnd1 family; I 75.5 2 4.3E-05 37.0 2.1 39 193-231 25-63 (188)
99 PRK14901 16S rRNA methyltransf 74.4 34 0.00073 32.9 10.5 20 32-51 253-272 (434)
100 TIGR02469 CbiT precorrin-6Y C5 73.8 2.9 6.2E-05 31.6 2.5 18 33-50 21-38 (124)
101 PRK07402 precorrin-6B methylas 71.0 11 0.00023 31.8 5.6 19 32-50 41-59 (196)
102 COG2813 RsmC 16S RNA G1207 met 70.1 9.4 0.0002 35.4 5.3 16 34-49 161-176 (300)
103 PRK00274 ksgA 16S ribosomal RN 69.4 10 0.00022 34.1 5.3 80 32-119 43-155 (272)
104 PRK08287 cobalt-precorrin-6Y C 68.8 6 0.00013 33.0 3.5 20 31-50 31-50 (187)
105 TIGR00478 tly hemolysin TlyA f 66.9 6.5 0.00014 34.9 3.5 39 7-52 58-96 (228)
106 cd08788 CARD_NOD2_2_CARD15 Cas 66.5 6.1 0.00013 29.7 2.7 34 197-230 13-46 (81)
107 PHA03412 putative methyltransf 66.0 2.9 6.4E-05 37.5 1.1 64 32-101 50-126 (241)
108 TIGR00080 pimt protein-L-isoas 65.4 8 0.00017 33.2 3.7 20 31-50 77-96 (215)
109 PRK10079 phosphonate metabolis 65.2 7.1 0.00015 34.1 3.4 52 165-219 15-71 (241)
110 PRK03612 spermidine synthase; 64.8 29 0.00064 34.3 8.0 51 174-226 397-449 (521)
111 PF02390 Methyltransf_4: Putat 64.5 13 0.00029 31.8 4.9 152 34-236 20-181 (195)
112 PRK11088 rrmA 23S rRNA methylt 64.5 7.3 0.00016 34.7 3.4 76 31-126 85-160 (272)
113 PF06080 DUF938: Protein of un 62.2 1.1E+02 0.0024 26.8 10.7 98 7-130 9-115 (204)
114 PRK04266 fibrillarin; Provisio 62.1 5.5 0.00012 35.1 2.1 20 32-51 73-92 (226)
115 PF02268 TFIIA_gamma_N: Transc 61.6 8.1 0.00018 26.3 2.4 22 196-217 11-32 (49)
116 KOG2904 Predicted methyltransf 61.1 7.7 0.00017 36.0 2.9 50 33-86 150-213 (328)
117 smart00650 rADc Ribosomal RNA 61.0 13 0.00029 30.5 4.1 20 33-52 15-34 (169)
118 KOG1270 Methyltransferases [Co 61.0 16 0.00034 33.6 4.8 65 169-242 172-242 (282)
119 COG2242 CobL Precorrin-6B meth 59.1 27 0.00058 30.3 5.7 66 10-83 16-95 (187)
120 PRK11534 DNA-binding transcrip 58.6 19 0.00041 30.9 4.8 60 177-238 20-83 (224)
121 KOG3433 Protein involved in me 56.9 7.7 0.00017 33.6 2.0 38 194-231 38-75 (203)
122 PF01728 FtsJ: FtsJ-like methy 55.4 7.4 0.00016 32.2 1.7 38 30-84 22-59 (181)
123 PF09851 SHOCT: Short C-termin 55.1 10 0.00022 23.0 1.8 18 202-219 6-23 (31)
124 KOG1499 Protein arginine N-met 54.2 48 0.001 31.5 7.0 116 7-188 34-163 (346)
125 PF05185 PRMT5: PRMT5 arginine 53.0 27 0.00059 34.0 5.4 22 32-53 187-208 (448)
126 PF02375 JmjN: jmjN domain; I 52.4 5.4 0.00012 25.1 0.3 15 224-238 1-15 (34)
127 PRK04148 hypothetical protein; 51.2 40 0.00087 27.6 5.3 48 31-87 16-73 (134)
128 TIGR00438 rrmJ cell division p 50.5 11 0.00024 31.5 2.0 19 170-188 124-142 (188)
129 TIGR00536 hemK_fam HemK family 50.1 17 0.00036 32.8 3.2 19 33-51 116-134 (284)
130 PRK11414 colanic acid/biofilm 49.6 17 0.00037 31.1 3.1 59 177-237 24-86 (221)
131 PF13679 Methyltransf_32: Meth 48.9 33 0.0007 27.5 4.5 40 5-51 6-45 (141)
132 PLN02366 spermidine synthase 48.5 1.7E+02 0.0038 26.9 9.7 20 30-49 90-109 (308)
133 COG1189 Predicted rRNA methyla 48.0 20 0.00043 32.3 3.3 35 9-50 64-98 (245)
134 COG2263 Predicted RNA methylas 47.5 10 0.00023 33.1 1.4 45 31-81 45-102 (198)
135 TIGR02325 C_P_lyase_phnF phosp 47.2 9.1 0.0002 33.0 1.0 42 177-218 21-67 (238)
136 PF12147 Methyltransf_20: Puta 46.6 57 0.0012 30.5 6.1 57 175-243 232-292 (311)
137 PRK14966 unknown domain/N5-glu 46.4 57 0.0012 31.8 6.4 18 33-50 253-270 (423)
138 TIGR02404 trehalos_R_Bsub treh 46.4 11 0.00024 32.7 1.4 45 177-221 13-63 (233)
139 TIGR03704 PrmC_rel_meth putati 46.2 21 0.00046 31.7 3.2 20 32-51 87-106 (251)
140 TIGR00730 conserved hypothetic 46.1 35 0.00077 29.0 4.4 41 196-239 137-177 (178)
141 TIGR03338 phnR_burk phosphonat 45.8 19 0.0004 30.6 2.7 59 177-237 24-86 (212)
142 PRK14896 ksgA 16S ribosomal RN 45.8 62 0.0013 28.7 6.2 47 32-85 30-88 (258)
143 PF03141 Methyltransf_29: Puta 45.8 5.3 0.00012 39.5 -0.7 23 110-132 174-197 (506)
144 PRK01544 bifunctional N5-gluta 45.6 54 0.0012 32.4 6.2 111 30-188 346-458 (506)
145 PRK11524 putative methyltransf 43.8 42 0.00091 30.3 4.8 18 171-188 59-76 (284)
146 PRK00517 prmA ribosomal protei 43.2 11 0.00023 33.3 0.9 17 32-48 120-136 (250)
147 TIGR00406 prmA ribosomal prote 43.0 13 0.00028 33.6 1.4 17 33-49 161-177 (288)
148 PF07021 MetW: Methionine bios 42.6 13 0.00027 32.5 1.1 25 112-137 70-94 (193)
149 KOG1331 Predicted methyltransf 42.5 19 0.00041 33.3 2.3 21 112-132 98-118 (293)
150 TIGR02018 his_ut_repres histid 42.4 16 0.00035 31.6 1.8 46 177-222 14-65 (230)
151 TIGR03840 TMPT_Se_Te thiopurin 42.2 16 0.00034 31.8 1.7 19 33-51 36-54 (213)
152 PTZ00338 dimethyladenosine tra 41.3 71 0.0015 29.3 5.9 51 32-86 37-99 (294)
153 PRK00377 cbiT cobalt-precorrin 40.1 23 0.00051 29.8 2.4 39 172-212 125-163 (198)
154 smart00545 JmjN Small domain f 39.6 17 0.00037 23.8 1.2 16 223-238 2-17 (42)
155 PRK14968 putative methyltransf 38.5 19 0.0004 29.4 1.5 18 171-188 127-144 (188)
156 PF01135 PCMT: Protein-L-isoas 37.8 1.1E+02 0.0025 26.5 6.4 35 9-50 57-91 (209)
157 PRK13943 protein-L-isoaspartat 37.4 31 0.00066 32.2 2.9 20 32-51 81-100 (322)
158 KOG3463 Transcription initiati 37.3 32 0.0007 27.2 2.5 20 198-217 14-33 (109)
159 COG2805 PilT Tfp pilus assembl 37.0 1E+02 0.0022 29.2 6.2 74 156-237 247-351 (353)
160 COG2264 PrmA Ribosomal protein 36.5 18 0.0004 33.5 1.3 20 31-50 162-181 (300)
161 PF09597 IGR: IGR protein moti 36.5 37 0.00079 23.8 2.5 27 161-187 13-39 (57)
162 KOG3178 Hydroxyindole-O-methyl 35.9 1.8E+02 0.0039 27.6 7.7 92 31-188 177-271 (342)
163 PRK14999 histidine utilization 35.8 22 0.00048 31.0 1.6 45 178-222 26-76 (241)
164 PRK03522 rumB 23S rRNA methylu 35.7 47 0.001 30.4 3.8 20 32-51 174-193 (315)
165 COG1802 GntR Transcriptional r 35.3 55 0.0012 28.2 4.1 59 177-237 29-91 (230)
166 TIGR00755 ksgA dimethyladenosi 34.8 44 0.00094 29.4 3.4 21 31-51 29-49 (253)
167 PRK11760 putative 23S rRNA C24 34.7 43 0.00092 31.9 3.4 44 7-50 187-230 (357)
168 PF06325 PrmA: Ribosomal prote 34.7 23 0.00049 32.7 1.6 17 33-49 163-179 (295)
169 PF03641 Lysine_decarbox: Poss 34.0 51 0.0011 26.3 3.4 39 196-237 95-133 (133)
170 PRK13255 thiopurine S-methyltr 33.6 27 0.00058 30.5 1.8 21 32-52 38-58 (218)
171 COG2188 PhnF Transcriptional r 33.3 28 0.00061 30.5 1.9 48 177-224 20-73 (236)
172 PRK09990 DNA-binding transcrip 32.9 46 0.001 29.0 3.2 47 177-223 20-71 (251)
173 PRK09764 DNA-binding transcrip 30.9 30 0.00065 30.2 1.7 43 177-219 18-65 (240)
174 PRK11402 DNA-binding transcrip 30.8 30 0.00065 30.1 1.7 43 177-219 22-69 (241)
175 COG2186 FadR Transcriptional r 29.5 43 0.00092 29.6 2.4 43 177-219 23-70 (241)
176 PRK13168 rumA 23S rRNA m(5)U19 28.9 78 0.0017 30.4 4.3 19 33-51 299-317 (443)
177 PRK10225 DNA-binding transcrip 28.8 55 0.0012 28.7 3.0 42 177-218 22-68 (257)
178 KOG4068 Uncharacterized conser 28.5 70 0.0015 27.2 3.4 41 197-237 68-108 (174)
179 PF10357 Kin17_mid: Domain of 28.3 56 0.0012 26.6 2.7 80 156-235 10-100 (127)
180 PF01739 CheR: CheR methyltran 28.0 61 0.0013 27.9 3.1 45 30-83 30-74 (196)
181 PRK11727 23S rRNA mA1618 methy 27.9 79 0.0017 29.5 4.0 19 30-48 113-131 (321)
182 TIGR03126 one_C_fae formaldehy 27.7 60 0.0013 27.4 2.8 44 194-237 79-125 (160)
183 COG2512 Predicted membrane-ass 27.6 32 0.00068 31.2 1.3 54 166-222 192-249 (258)
184 smart00418 HTH_ARSR helix_turn 27.2 68 0.0015 20.7 2.6 39 198-238 25-63 (66)
185 PRK10909 rsmD 16S rRNA m(2)G96 26.7 38 0.00082 29.2 1.5 19 33-51 55-73 (199)
186 TIGR00095 RNA methyltransferas 26.5 77 0.0017 26.9 3.4 37 9-51 33-69 (189)
187 TIGR02812 fadR_gamma fatty aci 26.1 38 0.00082 29.2 1.4 43 177-219 19-66 (235)
188 PLN03075 nicotianamine synthas 26.0 47 0.001 30.7 2.1 20 31-50 123-142 (296)
189 PF08714 Fae: Formaldehyde-act 25.9 69 0.0015 27.1 2.9 45 194-238 77-124 (159)
190 PRK03837 transcriptional regul 25.8 84 0.0018 27.0 3.6 45 177-221 26-75 (241)
191 PF02167 Cytochrom_C1: Cytochr 25.7 1E+02 0.0022 27.3 4.1 51 104-179 133-183 (219)
192 TIGR01444 fkbM_fam methyltrans 25.6 34 0.00074 26.7 1.0 17 34-50 1-17 (143)
193 PF06256 Nucleo_LEF-12: Nucleo 24.6 71 0.0015 27.6 2.8 30 194-223 13-42 (185)
194 PRK01544 bifunctional N5-gluta 24.4 39 0.00085 33.3 1.4 20 32-51 139-158 (506)
195 TIGR02085 meth_trns_rumB 23S r 24.3 64 0.0014 30.4 2.7 20 33-52 235-254 (374)
196 cd08325 CARD_CASP1-like Caspas 24.3 55 0.0012 24.3 1.9 27 197-223 15-41 (83)
197 TIGR03439 methyl_EasF probable 24.3 1.1E+02 0.0024 28.5 4.2 40 9-54 60-99 (319)
198 PF03514 GRAS: GRAS domain fam 24.1 1.8E+02 0.0039 27.5 5.7 46 29-85 108-153 (374)
199 PRK11523 DNA-binding transcrip 23.9 73 0.0016 27.8 2.9 47 177-223 21-72 (253)
200 TIGR00417 speE spermidine synt 23.9 1.3E+02 0.0027 26.9 4.4 20 31-50 72-91 (270)
201 PF11848 DUF3368: Domain of un 23.6 85 0.0018 20.7 2.5 39 203-241 8-48 (48)
202 COG2890 HemK Methylase of poly 23.2 37 0.00081 30.8 0.9 17 34-50 113-129 (280)
203 COG2231 Uncharacterized protei 23.0 1.1E+02 0.0024 27.1 3.6 53 181-243 32-84 (215)
204 PF13260 DUF4051: Protein of u 22.9 1.3E+02 0.0029 20.5 3.3 27 160-186 22-48 (54)
205 COG4976 Predicted methyltransf 22.9 42 0.00091 30.6 1.1 19 170-188 203-221 (287)
206 PF10925 DUF2680: Protein of u 22.9 79 0.0017 22.2 2.3 26 196-221 16-41 (59)
207 PF10474 DUF2451: Protein of u 22.9 1.7E+02 0.0036 26.0 4.9 83 160-244 90-206 (234)
208 KOG1475 Ribosomal protein RPL1 22.6 66 0.0014 30.1 2.3 57 177-238 234-293 (363)
209 KOG3191 Predicted N6-DNA-methy 22.6 1.4E+02 0.003 26.3 4.1 38 9-54 29-66 (209)
210 cd01671 CARD Caspase activatio 22.4 1.1E+02 0.0023 21.6 3.1 28 199-226 14-41 (80)
211 KOG1271 Methyltransferases [Ge 22.3 1E+02 0.0022 27.2 3.3 34 4-44 47-80 (227)
212 COG3937 Uncharacterized conser 22.2 50 0.0011 26.2 1.3 27 195-221 21-47 (108)
213 KOG3115 Methyltransferase-like 22.1 49 0.0011 29.6 1.3 58 180-237 171-230 (249)
214 PF07757 AdoMet_MTase: Predict 22.1 43 0.00094 26.7 0.9 15 30-44 57-71 (112)
215 PF00392 GntR: Bacterial regul 21.9 60 0.0013 22.2 1.6 41 177-217 13-58 (64)
216 cd05721 IgV_CTLA-4 Immunoglobu 21.9 57 0.0012 26.1 1.6 26 112-137 10-43 (115)
217 PF05891 Methyltransf_PK: AdoM 21.5 77 0.0017 28.1 2.5 90 30-188 54-157 (218)
218 PF08044 DUF1707: Domain of un 21.5 96 0.0021 21.2 2.5 40 199-238 10-50 (53)
219 PF13412 HTH_24: Winged helix- 21.4 62 0.0013 20.7 1.5 22 193-214 27-48 (48)
220 PF07514 TraI_2: Putative heli 21.3 94 0.002 29.0 3.2 118 103-242 169-298 (327)
221 PF00619 CARD: Caspase recruit 21.1 97 0.0021 22.1 2.6 25 199-223 17-41 (85)
222 PF05234 UAF_Rrn10: UAF comple 21.0 2E+02 0.0043 23.2 4.4 46 195-243 4-58 (120)
223 TIGR00479 rumA 23S rRNA (uraci 21.0 1.2E+02 0.0026 28.9 3.9 20 32-51 293-312 (431)
224 PRK10391 oriC-binding nucleoid 20.8 87 0.0019 23.0 2.2 14 177-190 45-58 (71)
225 PRK09464 pdhR transcriptional 20.6 1E+02 0.0022 26.9 3.1 43 177-219 23-70 (254)
226 PRK01287 xerC site-specific ty 20.5 3.1E+02 0.0067 25.0 6.4 45 196-240 98-149 (358)
227 PF05871 ESCRT-II: ESCRT-II co 20.5 98 0.0021 25.4 2.7 42 197-238 63-104 (139)
228 PF03676 UPF0183: Uncharacteri 20.3 68 0.0015 30.9 2.0 48 39-93 1-60 (394)
229 PRK02289 4-oxalocrotonate taut 20.1 2.9E+02 0.0063 18.7 5.1 41 43-86 11-51 (60)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=9e-83 Score=595.79 Aligned_cols=238 Identities=37% Similarity=0.664 Sum_probs=217.9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 036170 1 QRRVLERAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFND 80 (245)
Q Consensus 1 Q~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nD 80 (245)
||+++..++|+|++||++++ .+.+ ..++++|||||||+|+||+.+|++||++|+++|.+.+. .+|||||||||
T Consensus 37 Q~~~~~~~k~~leeai~~~~-~~~~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~---~~pe~qv~~nD 109 (386)
T PLN02668 37 QALHARSMLHLLEETLDNVH-LNSS---PEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGL---DPPEFSAFFSD 109 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cccC---CCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCC---CCCcceEEecC
Confidence 89999999999999998865 2321 13689999999999999999999999999999987543 47899999999
Q ss_pred CCCCchHHHhhhCCCC----------------CceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcc
Q 036170 81 HPENNFNTLFKTLPHS----------------RKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLA 144 (245)
Q Consensus 81 lP~NDFntLF~~L~~~----------------~~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~ 144 (245)
||+||||+||++||++ ++||++|||||||+||||++||||+||+||||||||+|+++.|+.++.
T Consensus 110 LP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~ 189 (386)
T PLN02668 110 LPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAA 189 (386)
T ss_pred CCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCccc
Confidence 9999999999999852 249999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc-----cc-------c-ccchHHHH-HHHHHHHHHhc
Q 036170 145 WNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM-----SQ-------T-TFGIFFDV-FGSCLMDMAKM 210 (245)
Q Consensus 145 ~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l-----~~-------~-~~~~~~~~-l~~~l~~mv~e 210 (245)
||||+|||++++++|.+||++||++||+.||++||+||+|||+| +. . ..+.+|+. +.++|+|||.|
T Consensus 190 ~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~e 269 (386)
T PLN02668 190 YNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQE 269 (386)
T ss_pred ccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHc
Confidence 99999999988899999999999999999999999999999999 11 1 13456776 99999999999
Q ss_pred CCCChhhhccCccCcccCCHHHHHHHHhhCCceeC
Q 036170 211 GITSNEKIDSFNIPNHHPTPKELESIIKTNKYFTI 245 (245)
Q Consensus 211 G~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~f~i 245 (245)
|+|++||+|+||+|+|+||++|++++|+++|+|+|
T Consensus 270 GlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I 304 (386)
T PLN02668 270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAI 304 (386)
T ss_pred CCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEe
Confidence 99999999999999999999999999999999987
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.4e-83 Score=593.96 Aligned_cols=228 Identities=49% Similarity=0.829 Sum_probs=191.6
Q ss_pred HHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhh
Q 036170 12 INEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK 91 (245)
Q Consensus 12 ~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~ 91 (245)
+|+||++++.... .+++|+|||||||+|+||+.+|+.||++|+++|.+.+. .++|||||||||||+||||+||+
T Consensus 1 ~~~ai~~~~~~~~----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~--~~~~e~~v~~nDlP~NDFn~lF~ 74 (334)
T PF03492_consen 1 LEEAIKELYNSSN----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNN--QPPPEFQVFFNDLPSNDFNTLFK 74 (334)
T ss_dssp -HHHHHHHHHSTT----TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT---SS--EEEEEEEE-TTS-HHHHHH
T ss_pred ChHHHHHHHhcCC----CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcC--CCCCeEEEEeCCCCCccHHHHHH
Confidence 6899999875343 68999999999999999999999999999999987651 25899999999999999999999
Q ss_pred hCCCC-------CceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCccccc-CCcHHHHHHH
Q 036170 92 TLPHS-------RKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGK-RFVKEVAEAY 163 (245)
Q Consensus 92 ~L~~~-------~~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~-~~~~~v~~ay 163 (245)
+||++ ++||++|||||||+||||++||||+||++||||||++|+++.++.+++||||+||++ +++++|.+||
T Consensus 75 ~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay 154 (334)
T PF03492_consen 75 SLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAY 154 (334)
T ss_dssp CHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHH
T ss_pred hChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHH
Confidence 99975 799999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred HHHHHHhHHHHHHHHHHhhccCCcc-----c-------ccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHH
Q 036170 164 STQFKKDIESFLNARAQELVAGGLM-----S-------QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPK 231 (245)
Q Consensus 164 ~~Q~~~D~~~FL~~Ra~EL~~GG~l-----~-------~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~e 231 (245)
++||++||.+||++||+||||||+| + ..+.+.+|++|+++|+|||.||+|++||+|+||+|+|+||.+
T Consensus 155 ~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~e 234 (334)
T PF03492_consen 155 AKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPE 234 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HH
T ss_pred HHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHH
Confidence 9999999999999999999999999 1 123457899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceeC
Q 036170 232 ELESIIKTNKYFTI 245 (245)
Q Consensus 232 Ev~~~ie~~G~f~i 245 (245)
||+++|+++|+|+|
T Consensus 235 Ev~~~I~~~gsF~I 248 (334)
T PF03492_consen 235 EVRAIIEEEGSFEI 248 (334)
T ss_dssp HHHHHHHHHTSEEE
T ss_pred HHHHHHhcCCCEEE
Confidence 99999999999986
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.30 E-value=8.7e-06 Score=69.78 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=95.1
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQ 109 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy 109 (245)
.++.+|.|+||.+|..+..+.. . -|..++...|.....-+..-+.+++ +-.| +-+.+-
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~--------~----------~~~~~~~~~D~~~~~~~~~~~~~~~-~~~~---~~~d~~ 90 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLK--------R----------FPQAEFIALDISAGMLAQAKTKLSE-NVQF---ICGDAE 90 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHH--------h----------CCCCcEEEEeChHHHHHHHHHhcCC-CCeE---Eecchh
Confidence 3457899999999987665422 1 1234677788766555555555542 1112 224555
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc
Q 036170 110 DRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS 189 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~ 189 (245)
...+|+++.|+++++.++||+.. ...+|+.-.+-|+|||.+.
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDD--------------------------------------LSQALSELARVLKPGGLLA 132 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 66678999999999999999732 2345667777888888881
Q ss_pred -----ccccchHHHHH---------HHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 190 -----QTTFGIFFDVF---------GSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 190 -----~~~~~~~~~~l---------~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
......+.+.. ..-|.++..+. ....+++...++.++++..++...+...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 198 (240)
T TIGR02072 133 FSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEELITLSFDDPLDVLRHLKKTGA 198 (240)
T ss_pred EEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEEEEEEeCCCHHHHHHHHHHhcc
Confidence 11111111111 12355666665 566666667788888888888887776553
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.10 E-value=7.7e-05 Score=65.38 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=84.1
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhh-CCC---CCceEEeecCcc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT-LPH---SRKYFAAGVPGF 107 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~-L~~---~~~~f~~~vpgS 107 (245)
.-+|+|+||.+|..+..+...+ ..|..+++.-|+-. +.-...+. +.. ..++ .-+-|.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~----------------~~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v--~~~~~d 114 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNI----------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPV--EILCND 114 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhc----------------CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCe--EEEECC
Confidence 3589999999998877653321 01234555555422 22212211 111 1111 122344
Q ss_pred cccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCc
Q 036170 108 FQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGL 187 (245)
Q Consensus 108 Fy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 187 (245)
+..--+| +.|++++.+++||++. .|...+|+.=.+-|+|||+
T Consensus 115 ~~~~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 115 IRHVEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred hhhCCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeE
Confidence 4432233 4679999999999732 1334567777889999999
Q ss_pred cc--c---cccchHHHHHHHHHHHHHh-cCCCChhhh----ccCccCcccCCHHHHHHHHhhCC
Q 036170 188 MS--Q---TTFGIFFDVFGSCLMDMAK-MGITSNEKI----DSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 188 l~--~---~~~~~~~~~l~~~l~~mv~-eG~i~~e~~----d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
+. + .......+.+...+..+.. +| .+.+++ +.+.-.....|++|+++.++++|
T Consensus 157 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG 219 (239)
T TIGR00740 157 LVLSEKFRFEDTKINHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNVG 219 (239)
T ss_pred EEEeecccCCCHhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 92 1 1111223344444444443 44 355443 22223345579999999999998
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.00 E-value=0.00017 Score=63.68 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=77.1
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
..-+|.|+||.+|..+..+... + |.-+|+..|+... .-...+...+. --|.. +.+ .
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~--------~----------~~~~v~gvD~s~~-~i~~a~~~~~~-~~~~~---~d~-~ 86 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVER--------W----------PAARITGIDSSPA-MLAEARSRLPD-CQFVE---ADI-A 86 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHH--------C----------CCCEEEEEECCHH-HHHHHHHhCCC-CeEEE---Cch-h
Confidence 4578999999999887655221 1 1236777775432 22222211111 11222 232 2
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcccc
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMSQ 190 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~~ 190 (245)
.+.|+++.|+++|+.++||+.. ...+|+.-.+-|+|||.+.-
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 87 SWQPPQALDLIFANASLQWLPD--------------------------------------HLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred ccCCCCCccEEEEccChhhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 3457789999999999999632 12345555668999999821
Q ss_pred ---ccc-chHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 191 ---TTF-GIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 191 ---~~~-~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
... ...+ ..++++.......+.-...-..+.+.++.+++...+.+.|.
T Consensus 129 ~~~~~~~~~~~----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 180 (258)
T PRK01683 129 QMPDNLDEPSH----VLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAAC 180 (258)
T ss_pred ECCCCCCCHHH----HHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCC
Confidence 111 1111 22333322111111100111123466788888888888774
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.98 E-value=5.2e-05 Score=67.20 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQ 109 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy 109 (245)
...-+|.|+||.+|..+..+ .++. |..+|+.-|+- -+.-...+.- .--|. -+.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l--------~~~~----------p~~~v~gvD~s-~~~~~~a~~~---~~~~~---~~d~- 81 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYL--------ARRW----------PGAVIEALDSS-PEMVAAARER---GVDAR---TGDV- 81 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHHC----------CCCEEEEEECC-HHHHHHHHhc---CCcEE---EcCh-
Confidence 34578999999999766543 2211 22467777752 2233333221 11122 2333
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc
Q 036170 110 DRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS 189 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~ 189 (245)
..+.|.++.|+++|+.++||+.. ...+|+.=.+-|+|||++.
T Consensus 82 ~~~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 82 RDWKPKPDTDVVVSNAALQWVPE--------------------------------------HADLLVRWVDELAPGSWIA 123 (255)
T ss_pred hhCCCCCCceEEEEehhhhhCCC--------------------------------------HHHHHHHHHHhCCCCcEEE
Confidence 35667889999999999999742 1123334456799999992
Q ss_pred c---cccchHHHHHHHHHHHHHhcCCCChhhh-ccCccCcccCCHHHHHHHHhhCC
Q 036170 190 Q---TTFGIFFDVFGSCLMDMAKMGITSNEKI-DSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 190 ~---~~~~~~~~~l~~~l~~mv~eG~i~~e~~-d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
- +..... ....+..+..++-.....- ..+..+.++.+.+++...++++|
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 176 (255)
T PRK14103 124 VQVPGNFDAP---SHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG 176 (255)
T ss_pred EEcCCCcCCh---hHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCC
Confidence 1 111111 1122333332221111100 11233456789999999999998
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.80 E-value=0.00068 Score=60.02 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=54.4
Q ss_pred ceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc--c---c
Q 036170 117 TLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS--Q---T 191 (245)
Q Consensus 117 Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~--~---~ 191 (245)
..|++++++++||+.. . +...+|+.=++-|+|||.+. + .
T Consensus 125 ~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 125 NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 4688999999999742 1 12234455567799999991 1 1
Q ss_pred ccchHHHHHHHHHHHHHhcCCCChhhhccC---ccCccc-CCHHHHHHHHhhCCc
Q 036170 192 TFGIFFDVFGSCLMDMAKMGITSNEKIDSF---NIPNHH-PTPKELESIIKTNKY 242 (245)
Q Consensus 192 ~~~~~~~~l~~~l~~mv~eG~i~~e~~d~f---n~P~y~-ps~eEv~~~ie~~G~ 242 (245)
......+.+...|.++....=.+++++..+ .--... -|.++..+.++++|-
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF 223 (247)
T PRK15451 169 EDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGF 223 (247)
T ss_pred CcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCc
Confidence 112223444556666655555565555321 011223 489999999999883
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.71 E-value=0.00029 Score=61.04 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=45.0
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhh-hCCC--CCceEEeecCccc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK-TLPH--SRKYFAAGVPGFF 108 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~-~L~~--~~~~f~~~vpgSF 108 (245)
.-+|.|+||.+|..+..+... . .|..+|+.-|+..+ .-...+ .+.. ..++ .-+.+..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~--------~---------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~v--~~~~~d~ 105 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA--------V---------GPEGHVIGLDFSEN-MLSVGRQKVKDAGLHNV--ELVHGNA 105 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH--------h---------CCCCEEEEEECCHH-HHHHHHHHHHhcCCCce--EEEEech
Confidence 468999999999977655321 1 12235666665322 211111 1111 0111 1222333
Q ss_pred ccccCCCCceeEEEecccccccc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWIS 131 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS 131 (245)
..--+|+++.|++++.+++||++
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~ 128 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVP 128 (231)
T ss_pred hcCCCCCCCccEEEEecccccCC
Confidence 33346789999999999999963
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.69 E-value=0.00039 Score=61.19 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=43.5
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
..-+|.|+||.+|..+..+ .+. ..+|+..|+-.. .-...+.... ...|+. +..-.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l--------~~~------------~~~v~~~D~s~~-~l~~a~~~~~-~~~~~~---~d~~~ 96 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYW--------RER------------GSQVTALDLSPP-MLAQARQKDA-ADHYLA---GDIES 96 (251)
T ss_pred CCCeEEEeeCCCCHHHHHH--------HHc------------CCeEEEEECCHH-HHHHHHhhCC-CCCEEE---cCccc
Confidence 3568999999999876543 111 125666675321 1111111100 112222 23333
Q ss_pred ccCCCCceeEEEeccccccccC
Q 036170 111 RLFPNSTLHIVHSSFALHWISK 132 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~ 132 (245)
--+|+++.|+++|+.++||...
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCC
Confidence 3468899999999999999644
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.55 E-value=0.0011 Score=59.34 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=16.7
Q ss_pred CCCCceeEEEeccccccc
Q 036170 113 FPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWL 130 (245)
||++|.|++++++++||+
T Consensus 141 ~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNV 158 (261)
T ss_pred CCCCCEeEEEEecccccC
Confidence 788999999999999996
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.50 E-value=0.00098 Score=59.79 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=78.2
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhh-CCCCCceEEeecCcccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT-LPHSRKYFAAGVPGFFQ 109 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~-L~~~~~~f~~~vpgSFy 109 (245)
...+|.|+||.+|..+..+.. .+ ..+|+.-|+..+- ....+. .....+ +..+.+++.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~~-----------~~~v~giD~s~~~-~~~a~~~~~~~~~--i~~~~~D~~ 109 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------KY-----------GAHVHGVDICEKM-VNIAKLRNSDKNK--IEFEANDIL 109 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------hc-----------CCEEEEEECCHHH-HHHHHHHcCcCCc--eEEEECCcc
Confidence 457899999999998765531 11 1356666653322 112221 111112 222335555
Q ss_pred cccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc
Q 036170 110 DRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS 189 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~ 189 (245)
..-+|+++.|+++|..++|+++. .|...+|+.=++-|+|||++.
T Consensus 110 ~~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 110 KKDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred cCCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 55688999999999888766421 144556667778899999992
Q ss_pred --ccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 190 --QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 190 --~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
...... .......+.+..... -...++++|+.+.++++|-
T Consensus 154 i~d~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~aGF 195 (263)
T PTZ00098 154 ITDYCADK-IENWDEEFKAYIKKR------------KYTLIPIQEYGDLIKSCNF 195 (263)
T ss_pred EEEecccc-ccCcHHHHHHHHHhc------------CCCCCCHHHHHHHHHHCCC
Confidence 110000 000111122221110 1234689999999998874
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.48 E-value=0.00025 Score=65.64 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=77.7
Q ss_pred EEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhC----CCCCceEEeecCccc
Q 036170 33 FRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTL----PHSRKYFAAGVPGFF 108 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L----~~~~~~f~~~vpgSF 108 (245)
-+|+|+||.+|..++.+.. . + +. +|+--| |+-.+..-++.. ....++-+ +++.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~-------~-----g------~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~~--~~~d~ 181 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLG-------A-----G------AK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAHL--LPLGI 181 (322)
T ss_pred CEEEEeccCCcHHHHHHHH-------c-----C------CC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeEE--EeCCH
Confidence 5899999999988875421 1 1 11 477777 555444333222 11223322 22333
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
- .+=.+++.|+++|..++||+. |...+|+.=++-|+|||++
T Consensus 182 e-~lp~~~~FD~V~s~~vl~H~~--------------------------------------dp~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 182 E-QLPALKAFDTVFSMGVLYHRR--------------------------------------SPLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred H-HCCCcCCcCEEEECChhhccC--------------------------------------CHHHHHHHHHHhcCCCcEE
Confidence 2 221167899999999998842 2334566667789999999
Q ss_pred c-cc----ccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCC
Q 036170 189 S-QT----TFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 189 ~-~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
. ++ +.+. ..+.+.+.+..+.-.++.||.+++..+++++|
T Consensus 223 vl~~~~i~~~~~--------------~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 223 VLETLVIDGDEN--------------TVLVPGDRYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred EEEEEEecCCCc--------------cccCchhHHhcCccceeCCCHHHHHHHHHHcC
Confidence 2 11 1000 01122233334444456789999999999998
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.46 E-value=0.0031 Score=55.87 Aligned_cols=146 Identities=19% Similarity=0.288 Sum_probs=76.2
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhh-CCC---CCce-EEeecC
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT-LPH---SRKY-FAAGVP 105 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~-L~~---~~~~-f~~~vp 105 (245)
.+.+|.|+||.+|..+..+... + .+|+.-|+-. +.-...+. +.. ..++ |+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~------------g--------~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~--- 99 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL------------G--------HQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIH--- 99 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc------------C--------CEEEEEECCH-HHHHHHHHHHHhcCCccceEEEE---
Confidence 4579999999999887766321 0 2455555322 22222221 111 1111 222
Q ss_pred cccccc-cCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 036170 106 GFFQDR-LFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVA 184 (245)
Q Consensus 106 gSFy~r-LfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~ 184 (245)
++..+- -+++++.|++++..++||+.. |. .+|+.=++=|+|
T Consensus 100 ~d~~~l~~~~~~~fD~V~~~~vl~~~~~-~~-------------------------------------~~l~~~~~~Lkp 141 (255)
T PRK11036 100 CAAQDIAQHLETPVDLILFHAVLEWVAD-PK-------------------------------------SVLQTLWSVLRP 141 (255)
T ss_pred cCHHHHhhhcCCCCCEEEehhHHHhhCC-HH-------------------------------------HHHHHHHHHcCC
Confidence 222221 146789999999999999853 11 123333456999
Q ss_pred CCcccc---cccchHHH-HHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCC
Q 036170 185 GGLMSQ---TTFGIFFD-VFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 185 GG~l~~---~~~~~~~~-~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
||++.- .....++. .+..-+ +.+..|+...++. . -.|.+..+++|+.+.+++.|
T Consensus 142 gG~l~i~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~p~~~~~~~~l~~~l~~aG 199 (255)
T PRK11036 142 GGALSLMFYNANGLLMHNMVAGNF-DYVQAGMPKRKKR-T-LSPDYPLDPEQVYQWLEEAG 199 (255)
T ss_pred CeEEEEEEECccHHHHHHHHccCh-HHHHhcCcccccc-C-CCCCCCCCHHHHHHHHHHCC
Confidence 999931 11111111 111111 1223343322211 1 13667789999999999887
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=97.39 E-value=0.008 Score=55.91 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=18.1
Q ss_pred cccccCCCCceeEEEeccccccc
Q 036170 108 FQDRLFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 108 Fy~rLfP~~Svh~~~Ss~alHWL 130 (245)
...--||+++.|+++|..++|++
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~ 199 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHM 199 (340)
T ss_pred cccCCCCCCCccEEEECCchhcc
Confidence 33334789999999999998885
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.33 E-value=0.00088 Score=48.71 Aligned_cols=93 Identities=24% Similarity=0.238 Sum_probs=54.0
Q ss_pred EeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccccccCCC
Q 036170 36 ADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDRLFPN 115 (245)
Q Consensus 36 aD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~rLfP~ 115 (245)
.|+||.+|.++..+.+. +...|+-.|.-.. .-...+.......+- -+-+++..--||+
T Consensus 1 LdiG~G~G~~~~~l~~~-------------------~~~~v~~~D~~~~-~~~~~~~~~~~~~~~--~~~~d~~~l~~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-------------------GGASVTGIDISEE-MLEQARKRLKNEGVS--FRQGDAEDLPFPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-------------------TTCEEEEEES-HH-HHHHHHHHTTTSTEE--EEESBTTSSSS-T
T ss_pred CEecCcCCHHHHHHHhc-------------------cCCEEEEEeCCHH-HHHHHHhcccccCch--heeehHHhCcccc
Confidence 49999999998877544 0123444442222 111111111111111 2334566668999
Q ss_pred CceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 116 STLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 116 ~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+|+|++++..++||+ + |...+++.=.+=|+|||++
T Consensus 59 ~sfD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp T-EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred ccccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEE
Confidence 999999999999997 1 3455666777789999975
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.32 E-value=0.0017 Score=49.32 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=61.3
Q ss_pred EEEEeecCCCCcCcHHHHH--------------HHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCc
Q 036170 33 FRVADLGCSTGPNTFIAMQ--------------NIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRK 98 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~ 98 (245)
-+|.|+||.+|..++.+.. ..++..+++..... ..+.++++..|+ .. .....
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~-~~----~~~~~----- 68 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRITFVQGDA-EF----DPDFL----- 68 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEEEEESCC-HG----GTTTS-----
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeEEEECcc-cc----CcccC-----
Confidence 4789999999999999988 67888887774322 245578887775 11 11111
Q ss_pred eEEeecCcccccccCCCCceeEEEecc-ccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHH
Q 036170 99 YFAAGVPGFFQDRLFPNSTLHIVHSSF-ALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNA 177 (245)
Q Consensus 99 ~f~~~vpgSFy~rLfP~~Svh~~~Ss~-alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~ 177 (245)
...|++++.. ++|++-.. .+...+|+.
T Consensus 69 -----------------~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~ 96 (112)
T PF12847_consen 69 -----------------EPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLER 96 (112)
T ss_dssp -----------------SCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHH
T ss_pred -----------------CCCCEEEECCCccccccch-----------------------------------hHHHHHHHH
Confidence 1178888888 66654210 245566777
Q ss_pred HHHhhccCCcc
Q 036170 178 RAQELVAGGLM 188 (245)
Q Consensus 178 Ra~EL~~GG~l 188 (245)
-.+-|+|||++
T Consensus 97 ~~~~L~pgG~l 107 (112)
T PF12847_consen 97 IRRLLKPGGRL 107 (112)
T ss_dssp HHHHEEEEEEE
T ss_pred HHHhcCCCcEE
Confidence 78999999997
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.31 E-value=0.0041 Score=55.58 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=51.4
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
...+|+|+||.+|--++.+...+ ++-+|..-|.-.+=.+.-=+.+.......+.-|=|..-+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~------------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV------------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc------------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 46899999999998887764332 023455555433322222222222111102222234455
Q ss_pred ccCCCCceeEEEeccccccccCCC
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIP 134 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P 134 (245)
=-||++|.|.+.+++.||++.+.+
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHH
Confidence 559999999999999999987644
No 18
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.08 E-value=0.0016 Score=56.01 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=44.0
Q ss_pred CceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcccccccch
Q 036170 116 STLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMSQTTFGI 195 (245)
Q Consensus 116 ~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~~~~~~~ 195 (245)
++.|+++|..++|++. |+..+|+.=++-|+|||++.-...
T Consensus 66 ~~fD~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~-- 105 (224)
T smart00828 66 DTYDLVFGFEVIHHIK--------------------------------------DKMDLFSNISRHLKDGGHLVLADF-- 105 (224)
T ss_pred CCCCEeehHHHHHhCC--------------------------------------CHHHHHHHHHHHcCCCCEEEEEEc--
Confidence 4789999999999852 244566677788999999921100
Q ss_pred HHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCC
Q 036170 196 FFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
....+. ....-..+.|.++.+|+...+++.|
T Consensus 106 ----~~~~~~-----------~~~~~~~~~~~~s~~~~~~~l~~~G 136 (224)
T smart00828 106 ----IANLLS-----------AIEHEETTSYLVTREEWAELLARNN 136 (224)
T ss_pred ----ccccCc-----------cccccccccccCCHHHHHHHHHHCC
Confidence 000000 0011123456888888888888776
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.07 E-value=0.0042 Score=53.12 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.8
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
+-+|+|+||.+|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la 49 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS 49 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 4699999999999998874
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.01 E-value=0.0047 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.9
Q ss_pred CeEEEEeecCCCCcCcHHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
+..+|+|+||.+|..++.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~ 23 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK 23 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHH
Confidence 457999999999999988763
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.97 E-value=0.014 Score=49.41 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=59.9
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
...+|.|+||..|..+..+.... +...+++.-|.-..-....=+.+....++-+ +.+.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-----------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~--~~~d~~~ 99 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-----------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIEF--IQADAEA 99 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-----------------CCCceEEEEECCHHHHHHHHHHhccCCCceE--Eecchhc
Confidence 45799999999998777653221 0113566666522111111111111111211 1244555
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
..++++++|++++++.+|+... ...+|+.-.+-|+|||++
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l 139 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRL 139 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence 5577889999999999887422 234577888899999999
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.94 E-value=0.0042 Score=53.19 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=16.5
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
.-+|.|+||..|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA 49 (197)
T ss_pred CCcEEEECCCCCHHHHHHH
Confidence 3689999999999998774
No 23
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.94 E-value=0.014 Score=49.91 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=46.2
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC---CCceEEeecCccc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH---SRKYFAAGVPGFF 108 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~---~~~~f~~~vpgSF 108 (245)
..+|+|+||..|..+..+.... ++..+++..|+..+=....=+.+.. ..++- -+-+++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~-----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV-----------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVE--FVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc-----------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCeE--EEeccc
Confidence 4799999999998877653321 0124566666643222111111111 11111 122445
Q ss_pred ccccCCCCceeEEEecccccccc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWIS 131 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS 131 (245)
....++.++.|++++++.+|++.
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~ 135 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVP 135 (239)
T ss_pred ccCCCCCCCccEEEEecccccCC
Confidence 55556778999999999998864
No 24
>PRK06922 hypothetical protein; Provisional
Probab=96.93 E-value=0.0029 Score=63.92 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=37.5
Q ss_pred cCCCCceeEEEeccccccc-cCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 112 LFPNSTLHIVHSSFALHWI-SKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 112 LfP~~Svh~~~Ss~alHWL-S~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
.||++++|++++++++||+ +.+|..-. .++ .+|...+|+.=.+-|+|||++
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEE
Confidence 4788999999999999975 44542110 011 247778888888999999999
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.89 E-value=0.0043 Score=56.18 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 115 NSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 115 ~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+++.|+++|..++|++.. .++..+|+.-.+-|+|||.+
T Consensus 182 ~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred cCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence 578999999999999732 24566777778889999995
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.88 E-value=0.0081 Score=55.85 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=48.6
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc-cc
Q 036170 113 FPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS-QT 191 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~-~~ 191 (245)
+++++.|++++...+||+.. ...||+.=++=|+|||++. .+
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~d--------------------------------------~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVAN--------------------------------------PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hccCCCCEEEEhhHHHhcCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 56789999999999999643 2235556666799999992 11
Q ss_pred ccchHHHHHHHH-HHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 192 TFGIFFDVFGSC-LMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 192 ~~~~~~~~l~~~-l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
............ ..+.+.. .+... .-....+.+++|+...+++.|.
T Consensus 236 ~nr~~~~~~~~i~~~eyi~~-~lp~g----th~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 236 INRTMRAYASTIVGAEYILR-WLPKG----THQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred CCcCHHHHHHhhhhHHHHHh-cCCCC----CcCccCCCCHHHHHHHHHHcCC
Confidence 111111000000 0111111 11111 1112247899999999999883
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.85 E-value=0.06 Score=46.37 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=17.0
Q ss_pred cCcccCCHHHHHHHHhhCC
Q 036170 223 IPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 223 ~P~y~ps~eEv~~~ie~~G 241 (245)
.++++++.+|++.++++.|
T Consensus 180 ~~~~~~~~~~~~~~l~~~G 198 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG 198 (219)
T ss_pred cceEEecHHHHHHHHHHcC
Confidence 4678899999999999988
No 28
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.82 E-value=0.00045 Score=51.90 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=44.9
Q ss_pred EeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhC---CCCCceEEeecCccccccc
Q 036170 36 ADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTL---PHSRKYFAAGVPGFFQDRL 112 (245)
Q Consensus 36 aD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L---~~~~~~f~~~vpgSFy~rL 112 (245)
.|+||.+|..+..++... |..++...|.-.+=-...=+.+ .....-.............
T Consensus 1 LdiGcG~G~~~~~l~~~~------------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL------------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC
T ss_pred CEeCccChHHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc
Confidence 499999999998774432 3467777775443221111111 1011112233222222222
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 113 FPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+.++.|+++++.++||+ + |+..+|+.=++=|+|||++
T Consensus 63 -~~~~fD~V~~~~vl~~l---~-----------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 -PPESFDLVVASNVLHHL---E-----------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -C----SEEEEE-TTS-----S------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred -cccccceehhhhhHhhh---h-----------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 22799999999999998 1 3455666777889999975
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.80 E-value=0.016 Score=54.27 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccccc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDR 111 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~r 111 (245)
..+|.|+||.+|..++.+.... +..+|..-|+..+ .-...+......++ .-+.|....-
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~------------------~~~~VtgVD~S~~-mL~~A~~k~~~~~i--~~i~gD~e~l 172 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV------------------DAKNVTILDQSPH-QLAKAKQKEPLKEC--KIIEGDAEDL 172 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC------------------CCCEEEEEECCHH-HHHHHHHhhhccCC--eEEeccHHhC
Confidence 4799999999998776553211 1135556665322 22222221111111 1133444444
Q ss_pred cCCCCceeEEEeccccccc
Q 036170 112 LFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 112 LfP~~Svh~~~Ss~alHWL 130 (245)
-+|+++.|+++++.++|++
T Consensus 173 p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCCceeEEEEcChhhhC
Confidence 4688999999999999985
No 30
>PRK06202 hypothetical protein; Provisional
Probab=96.77 E-value=0.024 Score=49.39 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCce-EEeecCccc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKY-FAAGVPGFF 108 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~-f~~~vpgSF 108 (245)
.+.-+|+|+||.+|..+..+... .++ . .+..+|..-|+-. +.-...+......++ +..+....+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~----~~~----~------g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARW----ARR----D------GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHH----HHh----C------CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc
Confidence 45679999999999877754222 221 1 2345777777633 333333332211111 222222221
Q ss_pred ccccCCCCceeEEEeccccccccC
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISK 132 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~ 132 (245)
-+++++.|+++|+.++||+..
T Consensus 124 ---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 124 ---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred ---cccCCCccEEEECCeeecCCh
Confidence 126789999999999999743
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.70 E-value=0.03 Score=48.18 Aligned_cols=132 Identities=16% Similarity=0.130 Sum_probs=71.5
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC--CCceEEeecCccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH--SRKYFAAGVPGFF 108 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~--~~~~f~~~vpgSF 108 (245)
..-+|.|+||.+|..++.+.... |..+|+-.|.-..=-..+-+.+.. ..++.+ +-++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~------------------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~--~~~d~ 99 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN------------------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRL--LCGDA 99 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC------------------CCccEEEEEechHHHHHHHHHHHHcCCCCEEE--EecCH
Confidence 45789999999999988764321 112344444322111111111100 012211 11222
Q ss_pred ---ccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccC
Q 036170 109 ---QDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAG 185 (245)
Q Consensus 109 ---y~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G 185 (245)
+.+.+|++++|.+++.++.+|... +.. ++ ..+...||+.=++-|+||
T Consensus 100 ~~~l~~~~~~~~~D~V~~~~~~p~~~~-~~~----------~~-------------------~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 100 VEVLLDMFPDGSLDRIYLNFPDPWPKK-RHH----------KR-------------------RLVQPEFLALYARKLKPG 149 (202)
T ss_pred HHHHHHHcCccccceEEEECCCCCCCc-ccc----------cc-------------------ccCCHHHHHHHHHHcCCC
Confidence 334578899999999888777543 100 00 012345666667889999
Q ss_pred Cccc-ccccchHHHHHHHHHHHHHhcCCCCh
Q 036170 186 GLMS-QTTFGIFFDVFGSCLMDMAKMGITSN 215 (245)
Q Consensus 186 G~l~-~~~~~~~~~~l~~~l~~mv~eG~i~~ 215 (245)
|.+. .... .+.+...+..|...|+-.+
T Consensus 150 G~l~i~~~~---~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 150 GEIHFATDW---EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CEEEEEcCC---HHHHHHHHHHHHhCccccc
Confidence 9992 1111 3345567777777887655
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.56 E-value=0.02 Score=53.09 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=50.7
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCccc-
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLMS- 189 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~- 189 (245)
.+-+.++.|.++|..+|||+.. ...+|+.=++-|+|||+|.
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence 3334568999999999999522 2234566677899999992
Q ss_pred ccc--cchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 190 QTT--FGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 190 ~~~--~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
++. .+... . .+.+.+.+..+.-.++.||.+++..++++.|-
T Consensus 224 etl~i~g~~~----~--------~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 224 ETLVIDGDLN----T--------VLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred EEEEecCccc----c--------ccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 110 00000 0 11222233344445677899999999999884
No 33
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.55 E-value=0.0016 Score=52.16 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=75.2
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQ 109 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy 109 (245)
...-+|.|+||..|.++..+ ++. . .++...|.-...-.. ...++..|.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~----------~--~~~~g~D~~~~~~~~------------~~~~~~~~~ 68 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR----------G--FEVTGVDISPQMIEK------------RNVVFDNFD 68 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT----------T--SEEEEEESSHHHHHH------------TTSEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh----------C--CEEEEEECCHHHHhh------------hhhhhhhhh
Confidence 34679999999999764433 211 1 266666643222211 111112221
Q ss_pred --cccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCc
Q 036170 110 --DRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGL 187 (245)
Q Consensus 110 --~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 187 (245)
...+|+++.|+++|+.+|||+. |+..+|+.=.+=|+|||.
T Consensus 69 ~~~~~~~~~~fD~i~~~~~l~~~~--------------------------------------d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 69 AQDPPFPDGSFDLIICNDVLEHLP--------------------------------------DPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp CHTHHCHSSSEEEEEEESSGGGSS--------------------------------------HHHHHHHHHHHCEEEEEE
T ss_pred hhhhhccccchhhHhhHHHHhhcc--------------------------------------cHHHHHHHHHHhcCCCCE
Confidence 4446889999999999999974 234556677778999999
Q ss_pred cc-ccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 188 MS-QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 188 l~-~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
+. ....... .....+.+ -....... -=..+.+.++++..+++.|.
T Consensus 111 l~~~~~~~~~--~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 111 LVISDPNRDD--PSPRSFLK---WRYDRPYG-----GHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEEEEEBTTS--HHHHHHHH---CCGTCHHT-----TTTEEBBHHHHHHHHHHTTE
T ss_pred EEEEEcCCcc--hhhhHHHh---cCCcCccC-----ceeccCCHHHHHHHHHHCCC
Confidence 92 1111000 01122222 11111110 11256699999999999884
No 34
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.50 E-value=0.053 Score=49.31 Aligned_cols=143 Identities=12% Similarity=0.118 Sum_probs=78.3
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhh-hCCCCC-ceEEeecCccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK-TLPHSR-KYFAAGVPGFF 108 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~-~L~~~~-~~f~~~vpgSF 108 (245)
+.-+|+|+||.+|.-++.+... -|..++..-|+|. --...+ .+.... .==+..++|+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~------------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~~d~ 208 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH------------------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVDI 208 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH------------------CCCCEEEEEecHH--HHHHHHHHHHhCCccceEEEEecCc
Confidence 4569999999999766655221 2345666668862 222222 111110 00145577899
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+..-+|.. |.++.+..+|-... .+-..+|+.=.+-|+|||++
T Consensus 209 ~~~~~~~~--D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 209 YKESYPEA--DAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred cCCCCCCC--CEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 87666763 88887777773211 01233455556779999999
Q ss_pred --cc----cccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 189 --SQ----TTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 189 --~~----~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
.+ ......+..+...+.. -|+.. .+..+++.+|+++++++.|-
T Consensus 251 ~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~e~~~ll~~aGf 299 (306)
T TIGR02716 251 LILDMVIDDPENPNFDYLSHYILG---AGMPF--------SVLGFKEQARYKEILESLGY 299 (306)
T ss_pred EEEEeccCCCCCchhhHHHHHHHH---ccccc--------ccccCCCHHHHHHHHHHcCC
Confidence 11 1112222223222221 22110 11235668999999999884
No 35
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.47 E-value=0.092 Score=45.02 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=16.6
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
...+|.|+||.+|..+..+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 34689999999999887765
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.45 E-value=0.0079 Score=57.96 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=46.9
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
..-+|+|+||.+|..++.+. +.. ..+|+--|+.. +.-...+.-......-+.-+-+.+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~~-----------~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------ENF-----------DVHVVGIDLSV-NMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hhc-----------CCEEEEEECCH-HHHHHHHHHhhcCCCceEEEEcCccc
Confidence 34689999999998665432 111 13566677642 22222221100101111222345666
Q ss_pred ccCCCCceeEEEecccccccc
Q 036170 111 RLFPNSTLHIVHSSFALHWIS 131 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS 131 (245)
..+|+++.|+++|..++||+.
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~ 346 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQ 346 (475)
T ss_pred CCCCCCCEEEEEECCcccccC
Confidence 678899999999999999973
No 37
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.43 E-value=0.02 Score=51.56 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCCceeEEEecccccccc
Q 036170 113 FPNSTLHIVHSSFALHWIS 131 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS 131 (245)
+|.++.|+++|.+.|||++
T Consensus 199 ~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred CccCCCCEEEechhHHhCC
Confidence 4678999999999999974
No 38
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.41 E-value=0.014 Score=52.38 Aligned_cols=75 Identities=23% Similarity=0.404 Sum_probs=46.8
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHH---------HHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEe
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIE---------LKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAA 102 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~---------~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~ 102 (245)
--+.+|+|||-|.-+-.+...-|+.|- +.|++ +..|++.+ .+|+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-----~qdp~i~~---------------------~~~v~ 126 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-----AQDPSIET---------------------SYFVG 126 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-----cCCCceEE---------------------EEEec
Confidence 347899999999887766555443321 12211 11232221 12222
Q ss_pred ecCcccccccCCCCceeEEEeccccccccCCCcc
Q 036170 103 GVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEE 136 (245)
Q Consensus 103 ~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~ 136 (245)
- --|.. |-+||+|+++||.++||....|..
T Consensus 127 D--EE~Ld--f~ens~DLiisSlslHW~NdLPg~ 156 (325)
T KOG2940|consen 127 D--EEFLD--FKENSVDLIISSLSLHWTNDLPGS 156 (325)
T ss_pred c--hhccc--ccccchhhhhhhhhhhhhccCchH
Confidence 1 33444 778999999999999999999854
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.33 E-value=0.022 Score=54.85 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 113 FPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+|+++.|++++..++||++. .++..+|+.-.+-|+|||++
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l 138 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYI 138 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEE
Confidence 68899999999999999743 13556777778889999999
No 40
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.10 E-value=0.028 Score=48.75 Aligned_cols=87 Identities=15% Similarity=0.278 Sum_probs=57.3
Q ss_pred eEEEEeecCCCCcCcHHHHH------------HHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCce
Q 036170 32 TFRVADLGCSTGPNTFIAMQ------------NIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKY 99 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~ 99 (245)
+-++.|+||..|+||+.+.+ ..|+.+.+...+.+ -+|+...-|+-. +
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~--~------------- 89 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLND--F------------- 89 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCC--B-------------
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchh--c-------------
Confidence 45899999999999998875 35666665544432 237777777522 1
Q ss_pred EEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHH
Q 036170 100 FAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARA 179 (245)
Q Consensus 100 f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 179 (245)
-+ +...|+++|...+|.|.. ..+..+++.-.
T Consensus 90 ------------~~-~~~yD~I~st~v~~fL~~------------------------------------~~~~~i~~~m~ 120 (192)
T PF03848_consen 90 ------------DF-PEEYDFIVSTVVFMFLQR------------------------------------ELRPQIIENMK 120 (192)
T ss_dssp ------------S--TTTEEEEEEESSGGGS-G------------------------------------GGHHHHHHHHH
T ss_pred ------------cc-cCCcCEEEEEEEeccCCH------------------------------------HHHHHHHHHHH
Confidence 12 245799999999999843 12344566777
Q ss_pred HhhccCCcc
Q 036170 180 QELVAGGLM 188 (245)
Q Consensus 180 ~EL~~GG~l 188 (245)
+.++|||.+
T Consensus 121 ~~~~pGG~~ 129 (192)
T PF03848_consen 121 AATKPGGYN 129 (192)
T ss_dssp HTEEEEEEE
T ss_pred hhcCCcEEE
Confidence 889999997
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.95 E-value=0.22 Score=42.26 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=26.4
Q ss_pred HHhhccCCccc-ccccchHHHHHHHHHHHHHhcCCCChhhhccCccC
Q 036170 179 AQELVAGGLMS-QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIP 224 (245)
Q Consensus 179 a~EL~~GG~l~-~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P 224 (245)
.+=|+|||++. ..+... ..-+..+.+.|..+|+ ...+.+++..|
T Consensus 129 ~~~LkpgG~lvi~~~~~~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 129 LNLLKVGGYFLAYKGKKY-LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred HHhcCCCCEEEEEcCCCc-HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 44599999993 112222 3344455577777885 44446788877
No 42
>PRK08317 hypothetical protein; Provisional
Probab=95.87 E-value=0.06 Score=45.75 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=43.4
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC-CCc-eEEeecCccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH-SRK-YFAAGVPGFF 108 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~-~~~-~f~~~vpgSF 108 (245)
..-+|.|+||..|..+..+.... .|.-+++.-|+-.+-....-+.... ..+ -|.. +.+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~-----------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~---~d~ 78 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV-----------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR---GDA 78 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc-----------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe---ccc
Confidence 45789999999998776553322 0112455555433221111111000 011 1211 222
Q ss_pred ccccCCCCceeEEEeccccccccC
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISK 132 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~ 132 (245)
...-+++++.|++++..++||+..
T Consensus 79 ~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 79 DGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred ccCCCCCCCceEEEEechhhccCC
Confidence 333367789999999999998643
No 43
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.81 E-value=0.016 Score=51.39 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=52.6
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhh-CCC--CCce-EEeecCc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT-LPH--SRKY-FAAGVPG 106 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~-L~~--~~~~-f~~~vpg 106 (245)
...+|.|+||.+|-.|..+... . .|..+|+.-|.. .+--.+.+. +.. ..++ |+. |
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~--------~---------~~~~~v~~vD~s-~~ML~~a~~k~~~~~~~~i~~v~---~ 105 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARR--------V---------GPNGKVVGVDIS-PGMLEVARKKLKREGLQNIEFVQ---G 105 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGG--------S---------S---EEEEEES--HHHHHHHHHHHHHTT--SEEEEE----
T ss_pred CCCEEEEeCCChHHHHHHHHHH--------C---------CCccEEEEecCC-HHHHHHHHHHHHhhCCCCeeEEE---c
Confidence 4579999999999887765211 0 223455555532 111122211 110 1123 333 3
Q ss_pred ccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCC
Q 036170 107 FFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGG 186 (245)
Q Consensus 107 SFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 186 (245)
..-.==||++|.|.+.+++++|-+.. ....|+.=.+=|+|||
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLKPGG 147 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcCCCe
Confidence 33333489999999999999998633 2233555567799999
Q ss_pred ccc--c--cccchHHHHHHHHHHH----HHhcCCCChhhhccCc----cCcccCCHHHHHHHHhhCC
Q 036170 187 LMS--Q--TTFGIFFDVFGSCLMD----MAKMGITSNEKIDSFN----IPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 187 ~l~--~--~~~~~~~~~l~~~l~~----mv~eG~i~~e~~d~fn----~P~y~ps~eEv~~~ie~~G 241 (245)
++. + ......+..+-..+.. .+ -++++.+ .+.+. --.-+|+.+|+.+.++++|
T Consensus 148 ~l~ile~~~p~~~~~~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G 212 (233)
T PF01209_consen 148 RLVILEFSKPRNPLLRALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG 212 (233)
T ss_dssp EEEEEEEEB-SSHHHHHHHHH----------------------------------------------
T ss_pred EEEEeeccCCCCchhhceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc
Confidence 991 1 1111112211111111 11 1233332 11111 2235789999999999888
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.79 E-value=0.02 Score=43.22 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=14.1
Q ss_pred EEeecCCCCcCcHHHHHH
Q 036170 35 VADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 35 IaD~GCS~G~Ns~~~~~~ 52 (245)
|.|+||.+|.++..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 789999999999988765
No 45
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.61 E-value=0.1 Score=47.61 Aligned_cols=39 Identities=10% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNI 53 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~i 53 (245)
..++++...++.. . .+...+|.|+||.+|.-|..++...
T Consensus 47 ~~il~~~~~~ia~-~-----~~~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 47 AAILERHADEIAA-A-----TGAGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred HHHHHHHHHHHHH-h-----hCCCCeEEecCCCcchhHHHHHHhh
Confidence 3566666655432 1 1234689999999999998886654
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.42 E-value=0.079 Score=47.73 Aligned_cols=110 Identities=20% Similarity=0.312 Sum_probs=69.2
Q ss_pred CCeEEEEeecCCCCcCcHHHHHH--------------HHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQN--------------IIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH 95 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~ 95 (245)
+..-+|+|+||..|.-++++.+. ..+..++.. +.+ .-...++|+..| ++...+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv-~ln---~l~~ri~v~~~D-----i~~~~~~~-- 111 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNV-ALN---PLEERIQVIEAD-----IKEFLKAL-- 111 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHH-HhC---cchhceeEehhh-----HHHhhhcc--
Confidence 44789999999999999988776 122222211 111 123457777766 33333333
Q ss_pred CCceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHH
Q 036170 96 SRKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFL 175 (245)
Q Consensus 96 ~~~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL 175 (245)
+.++.|+++|. | +|++.... ..+.+..+-.+-+..-++..++
T Consensus 112 ------------------~~~~fD~Ii~N---------P---------Pyf~~~~~--~~~~~~~~~Ar~e~~~~le~~i 153 (248)
T COG4123 112 ------------------VFASFDLIICN---------P---------PYFKQGSR--LNENPLRAIARHEITLDLEDLI 153 (248)
T ss_pred ------------------cccccCEEEeC---------C---------CCCCCccc--cCcChhhhhhhhhhcCCHHHHH
Confidence 22377888872 3 33332222 2234455555667788999999
Q ss_pred HHHHHhhccCCcc
Q 036170 176 NARAQELVAGGLM 188 (245)
Q Consensus 176 ~~Ra~EL~~GG~l 188 (245)
+.=++=|++||++
T Consensus 154 ~~a~~~lk~~G~l 166 (248)
T COG4123 154 RAAAKLLKPGGRL 166 (248)
T ss_pred HHHHHHccCCCEE
Confidence 9999999999999
No 47
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.36 E-value=0.11 Score=45.16 Aligned_cols=102 Identities=21% Similarity=0.200 Sum_probs=58.9
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccccc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDR 111 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~r 111 (245)
.-+|+|+||++|.-+..+... . .+.-+|+--|+-. . ..++ ++. .+-|.+...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~--------~---------~~~~~V~aVDi~~--~----~~~~---~v~--~i~~D~~~~ 103 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQ--------I---------GDKGRVIACDILP--M----DPIV---GVD--FLQGDFRDE 103 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHH--------c---------CCCceEEEEeccc--c----cCCC---CcE--EEecCCCCh
Confidence 358999999999876655321 1 1123555556522 1 1112 221 223455552
Q ss_pred --------cCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 036170 112 --------LFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELV 183 (245)
Q Consensus 112 --------LfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~ 183 (245)
-++++++|+++|..+.||... |. .| .. .. .......|+.=.+-|+
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-----------------~~-~~------~~~~~~~L~~~~~~Lk 156 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-----------------IP-RA------MYLVELALDMCRDVLA 156 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-----------------HH-HH------HHHHHHHHHHHHHHcC
Confidence 267899999999999999431 10 00 00 00 0113467777788899
Q ss_pred cCCcc
Q 036170 184 AGGLM 188 (245)
Q Consensus 184 ~GG~l 188 (245)
|||++
T Consensus 157 pGG~~ 161 (209)
T PRK11188 157 PGGSF 161 (209)
T ss_pred CCCEE
Confidence 99999
No 48
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=95.09 E-value=0.41 Score=40.89 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.6
Q ss_pred CeEEEEeecCCCCcCcHHH
Q 036170 31 STFRVADLGCSTGPNTFIA 49 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~ 49 (245)
+..+|.|+||.+|..+..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l 63 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL 63 (224)
T ss_pred CCCeEEEECCCCCHHHHHH
Confidence 4679999999999876654
No 49
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.03 E-value=0.081 Score=37.54 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=39.7
Q ss_pred EEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhC--CCCCceEEeecCcccccc
Q 036170 34 RVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTL--PHSRKYFAAGVPGFFQDR 111 (245)
Q Consensus 34 ~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L--~~~~~~f~~~vpgSFy~r 111 (245)
+|+|+||..|..+..+.. .+...++.-|+..+-....-+.. .....+-+.. +.+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~-------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 59 (107)
T cd02440 1 RVLDLGCGTGALALALAS-------------------GPGARVTGVDISPVALELARKAAAALLADNVEVLK--GDAEEL 59 (107)
T ss_pred CeEEEcCCccHHHHHHhc-------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEE--cChhhh
Confidence 589999999987766532 01135555665443332222111 0111111111 222222
Q ss_pred c-CCCCceeEEEeccccccc
Q 036170 112 L-FPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 112 L-fP~~Svh~~~Ss~alHWL 130 (245)
. .+..+.|++++...+++.
T Consensus 60 ~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 60 PPEADESFDVIISDPPLHHL 79 (107)
T ss_pred ccccCCceEEEEEccceeeh
Confidence 2 356789999998888875
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.71 E-value=0.38 Score=40.93 Aligned_cols=20 Identities=30% Similarity=0.683 Sum_probs=16.7
Q ss_pred ccCCCCceeEEEeccccccc
Q 036170 111 RLFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWL 130 (245)
.++|++++|.++..+.-+|-
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~ 100 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWP 100 (194)
T ss_pred hhCCCCceeEEEEECCCcCC
Confidence 44677899999999998993
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.67 E-value=0.31 Score=43.94 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchH
Q 036170 8 AKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFN 87 (245)
Q Consensus 8 ~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFn 87 (245)
-+.||.....++++.+ ...+-+|.+.||.-|.+.+.++ +. .+.+.+.||..|...|-=+
T Consensus 53 dR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll-------~~---------~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLL-------KT---------SPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred hhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhh-------hc---------CCCCCeEEEEcCCChHHHH
Confidence 4568888888766543 2233499999999887766653 21 1245589999886554332
Q ss_pred HHhhhCCCC-C--ceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHH
Q 036170 88 TLFKTLPHS-R--KYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYS 164 (245)
Q Consensus 88 tLF~~L~~~-~--~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~ 164 (245)
-+=++-.-. . .-|+.-.-++=-..-++.+|||++..-+. ||-+|++-.
T Consensus 112 ~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pek~-------------------------- 162 (264)
T KOG2361|consen 112 LVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPEKM-------------------------- 162 (264)
T ss_pred HHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccChHHH--------------------------
Confidence 222211101 1 12333333332444556677776655443 344443221
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHhcCCCChhhhc-cCccCcccCCHHHHHHHHhhCCc
Q 036170 165 TQFKKDIESFLNARAQELVAGGLMSQTTFGIFFDVFGSCLMDMAKMGITSNEKID-SFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 165 ~Q~~~D~~~FL~~Ra~EL~~GG~l~~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
.+=++.=.+=|+|||.+.-...|. +++- ....-.+-.|++..+- .==.+.|+-+.+|+..++.++|-
T Consensus 163 -------~~a~~nl~~llKPGG~llfrDYg~-~Dla---qlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 163 -------QSVIKNLRTLLKPGGSLLFRDYGR-YDLA---QLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred -------HHHHHHHHHHhCCCcEEEEeeccc-chHH---HHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 111233445688999993211111 1111 0111123344443332 11247899999999999998884
No 52
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.64 E-value=0.11 Score=43.10 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=16.4
Q ss_pred CCCCceeEEEeccccccc
Q 036170 113 FPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWL 130 (245)
+++++.|++++.+++||+
T Consensus 40 ~~~~~fD~v~~~~~l~~~ 57 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNV 57 (160)
T ss_pred CCCCCeeEEEecchhhcC
Confidence 578899999999999996
No 53
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=94.62 E-value=0.28 Score=46.95 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=32.1
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
..+|++|+|.++..+...|-.+ + + + ++ -...||+.=++=|+|||.+
T Consensus 186 ~~~~~~s~D~I~lnFPdPW~Kk-r-------H----R-Rl-------------------v~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPWDKK-P-------H----R-RV-------------------ISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred hhCCCCceeEEEEeCCCCcccc-c-------h----h-hc-------------------cHHHHHHHHHHHcCCCcEE
Confidence 4578999999998877777211 1 0 0 11 1356788888899999999
No 54
>PTZ00146 fibrillarin; Provisional
Probab=94.55 E-value=0.34 Score=44.73 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ 52 (245)
++.|-.||-.- ++.++ ...-.+|+|+||++|..|..+...
T Consensus 114 rSKlaa~i~~g--~~~l~--IkpG~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 114 RSKLAAAIIGG--VANIP--IKPGSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred ccHHHHHHHCC--cceec--cCCCCEEEEeCCcCCHHHHHHHHH
Confidence 34566666322 23333 223368999999999988776543
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.48 E-value=0.071 Score=47.48 Aligned_cols=25 Identities=16% Similarity=0.484 Sum_probs=20.5
Q ss_pred cccCCCCceeEEEeccccccccCCC
Q 036170 110 DRLFPNSTLHIVHSSFALHWISKIP 134 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~alHWLS~~P 134 (245)
...-|+...|++||..+||||..-|
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccccH
Confidence 4567899999999999999985533
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.42 E-value=0.68 Score=42.98 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.2
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
..+|.|+||.+|..++.+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~ 164 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLAL 164 (315)
T ss_pred CCEEEEecCCCCHHHHHHHH
Confidence 46999999999999887754
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=94.41 E-value=0.48 Score=40.61 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhh-hcccCCCCCeEEEEeecCCCCcCcHHHH
Q 036170 8 AKELINEAIADKLDL-KLLKIDTSSTFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 8 ~~~~~~~ai~~~~~~-~~~~~~~~~~~~IaD~GCS~G~Ns~~~~ 50 (245)
+.++.++.+.+.+.+ ..+ +..-+|.|+||.+|..++.+.
T Consensus 25 ~~~~~~~~~~d~l~l~~~l----~~g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 25 PEELWERHILDSLAIAPYL----PGGERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred HHHHHHHHHHHHHHHHhhc----CCCCeEEEEcCCCCHHHHHHH
Confidence 344555555444322 222 235789999999998888664
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.34 E-value=0.093 Score=46.68 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=18.7
Q ss_pred cccccccCCCCceeEEEeccccccc
Q 036170 106 GFFQDRLFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 106 gSFy~rLfP~~Svh~~~Ss~alHWL 130 (245)
|.+..--+|++++|++++...+||.
T Consensus 135 ~d~~~l~~~~~~fD~Vi~~~v~~~~ 159 (272)
T PRK11873 135 GEIEALPVADNSVDVIISNCVINLS 159 (272)
T ss_pred cchhhCCCCCCceeEEEEcCcccCC
Confidence 3443333578899999999999985
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.24 E-value=0.25 Score=42.70 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=42.6
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhh-CCCCCceEEeecCcccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKT-LPHSRKYFAAGVPGFFQ 109 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~-L~~~~~~f~~~vpgSFy 109 (245)
..-+|.|+||.+|.++..+.... +..+++--|+-.+ .=...+. ++. ..+. .|+..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~------------------~~~~v~giDiS~~-~l~~A~~~~~~-~~~~----~~d~~ 98 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL------------------PFKHIYGVEINEY-AVEKAKAYLPN-INII----QGSLF 98 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC------------------CCCeEEEEECCHH-HHHHHHhhCCC-CcEE----Eeecc
Confidence 34579999999998777653220 1123444443221 1111111 221 1121 23444
Q ss_pred cccCCCCceeEEEecccccccc
Q 036170 110 DRLFPNSTLHIVHSSFALHWIS 131 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~alHWLS 131 (245)
. -+|+++.|++++..+||+++
T Consensus 99 ~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 99 D-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred C-CCCCCCEEEEEECChhhhCC
Confidence 4 57899999999999998764
No 60
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=94.22 E-value=0.074 Score=47.87 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=30.7
Q ss_pred CCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 114 PNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 114 P~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+++|||++.+.-|+||. |+.+|++.=.+-|++.|.+
T Consensus 97 ~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred CCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCCCCE
Confidence 38999999999999994 7788888888889886644
No 61
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.16 E-value=0.46 Score=41.43 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=61.0
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
+.-+|+|+|+++|..++.+ ++ + -|.+++..=|||.. ........+ +.-+||.|+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l-------~~-~----------~P~l~~~v~Dlp~v-----~~~~~~~~r--v~~~~gd~f- 153 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIAL-------AR-A----------YPNLRATVFDLPEV-----IEQAKEADR--VEFVPGDFF- 153 (241)
T ss_dssp TSSEEEEET-TTSHHHHHH-------HH-H----------STTSEEEEEE-HHH-----HCCHHHTTT--EEEEES-TT-
T ss_pred CccEEEeccCcchHHHHHH-------HH-H----------CCCCcceeeccHhh-----hhccccccc--cccccccHH-
Confidence 3458999999999877654 22 2 34578888999863 111111223 344789999
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccC--Ccc
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAG--GLM 188 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~G--G~l 188 (245)
.=+|. -|+++-...||=.+. .|-..+|+.=++-|+|| |++
T Consensus 154 ~~~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~~g~l 195 (241)
T PF00891_consen 154 DPLPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGKDGRL 195 (241)
T ss_dssp TCCSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECTTEEE
T ss_pred hhhcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCCCCeE
Confidence 77788 888888888864321 24456677778889999 999
No 62
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=93.86 E-value=3.3 Score=35.63 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.0
Q ss_pred ccCCHHHHHHHHhhCCc
Q 036170 226 HHPTPKELESIIKTNKY 242 (245)
Q Consensus 226 y~ps~eEv~~~ie~~G~ 242 (245)
.+.+.+|+.+++++.|.
T Consensus 182 ~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 182 KFIKPSELAAWLRQAGL 198 (233)
T ss_pred hcCCHHHHHHHHHHCCC
Confidence 46689999999998874
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.63 E-value=0.87 Score=41.36 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
+.+|+|+||.+|..++.+..
T Consensus 122 ~~~vLDlG~GsG~i~~~la~ 141 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAY 141 (284)
T ss_pred CCEEEEEeCchhHHHHHHHH
Confidence 46899999999998887754
No 64
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.60 E-value=0.58 Score=44.56 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=39.8
Q ss_pred EEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhh-hCCCC--Cc-eEEeecCccc
Q 036170 33 FRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFK-TLPHS--RK-YFAAGVPGFF 108 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~-~L~~~--~~-~f~~~vpgSF 108 (245)
-+|+|+||.+|.-++.+... .|..+|..-|...- --...+ ++... .. .-+..+.+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~------------------~P~~~V~~vD~S~~-Av~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK------------------NPQAKVVFVDESPM-AVASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred CeEEEEeccccHHHHHHHHh------------------CCCCEEEEEECCHH-HHHHHHHHHHHcCcccCceEEEEEccc
Confidence 48999999999866654221 23456666665320 000000 01000 00 0011122333
Q ss_pred ccccCCCCceeEEEeccccccc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWL 130 (245)
+..+ +..+.|+++|.-.+|+.
T Consensus 291 l~~~-~~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 291 LSGV-EPFRFNAVLCNPPFHQQ 311 (378)
T ss_pred cccC-CCCCEEEEEECcCcccC
Confidence 4433 55689999998888874
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.37 E-value=0.42 Score=41.81 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=61.7
Q ss_pred CCCeEEEEeecCCCCcCcHHHH------------HHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCC
Q 036170 29 TSSTFRVADLGCSTGPNTFIAM------------QNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHS 96 (245)
Q Consensus 29 ~~~~~~IaD~GCS~G~Ns~~~~------------~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~ 96 (245)
.+.--++.|+|||.|-.|..+. ...|+.-++++.. .|.+++..-|+|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~------------- 100 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPE------------- 100 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT-------------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCC-------------
Confidence 4556789999999999998764 5667777766632 3567777777542
Q ss_pred CceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHH
Q 036170 97 RKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLN 176 (245)
Q Consensus 97 ~~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~ 176 (245)
..|....|+++-+-.+++|+. ..|+..++.
T Consensus 101 ---------------~~P~~~FDLIV~SEVlYYL~~-----------------------------------~~~L~~~l~ 130 (201)
T PF05401_consen 101 ---------------FWPEGRFDLIVLSEVLYYLDD-----------------------------------AEDLRAALD 130 (201)
T ss_dssp ------------------SS-EEEEEEES-GGGSSS-----------------------------------HHHHHHHHH
T ss_pred ---------------CCCCCCeeEEEEehHhHcCCC-----------------------------------HHHHHHHHH
Confidence 248889999999999999854 135666777
Q ss_pred HHHHhhccCCcc
Q 036170 177 ARAQELVAGGLM 188 (245)
Q Consensus 177 ~Ra~EL~~GG~l 188 (245)
.=.+-|.|||.|
T Consensus 131 ~l~~~L~pgG~L 142 (201)
T PF05401_consen 131 RLVAALAPGGHL 142 (201)
T ss_dssp HHHHTEEEEEEE
T ss_pred HHHHHhCCCCEE
Confidence 778889999999
No 66
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.37 E-value=0.67 Score=39.66 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.9
Q ss_pred CeEEEEeecCCCCcCcHHH
Q 036170 31 STFRVADLGCSTGPNTFIA 49 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~ 49 (245)
...+|.|+||.+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 4579999999999988743
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.01 E-value=0.89 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=16.4
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
..-+|.|+||.+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34689999999999986654
No 68
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.93 E-value=0.072 Score=47.03 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=44.0
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCC-chHHHhhhCCCCCceEEeecCccc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPEN-NFNTLFKTLPHSRKYFAAGVPGFF 108 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~N-DFntLF~~L~~~~~~f~~~vpgSF 108 (245)
++..+|||+||.++.-+ .++.+ .+.|+-=||-.. |+- ..|=.+.||
T Consensus 71 ~~~~viaD~GCGdA~la--------~~~~~-------------~~~V~SfDLva~n~~V---------tacdia~vP--- 117 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLA--------KAVPN-------------KHKVHSFDLVAPNPRV---------TACDIANVP--- 117 (219)
T ss_dssp -TTS-EEEES-TT-HHH--------HH--S----------------EEEEESS-SSTTE---------EES-TTS-S---
T ss_pred CCCEEEEECCCchHHHH--------Hhccc-------------CceEEEeeccCCCCCE---------EEecCccCc---
Confidence 56799999999988655 22221 234555454332 210 012234556
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
++++|||++..+-||.= .||..||+.=.+=|++||.|
T Consensus 118 ----L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 118 ----LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp ------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEE
T ss_pred ----CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEE
Confidence 58999999987766431 27888999999999999999
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.81 E-value=0.75 Score=43.68 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.6
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
.-+|+|+||..|..++.+.
T Consensus 168 g~rVLDIGcG~G~~a~~la 186 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAA 186 (383)
T ss_pred CCEEEEeCCCccHHHHHHH
Confidence 4589999999999877653
No 70
>PRK05785 hypothetical protein; Provisional
Probab=92.70 E-value=0.11 Score=45.49 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=45.1
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccccc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDR 111 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~r 111 (245)
.-+|.|+||.+|..+..+.... ..+|+--|+ +-+.=.+.+.- .-++ -+++-.-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-------------------~~~v~gvD~-S~~Ml~~a~~~----~~~~---~~d~~~l 104 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-------------------KYYVVALDY-AENMLKMNLVA----DDKV---VGSFEAL 104 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-------------------CCEEEEECC-CHHHHHHHHhc----cceE---EechhhC
Confidence 4689999999998876553221 024555553 22222222211 1122 2344444
Q ss_pred cCCCCceeEEEeccccccccCCC
Q 036170 112 LFPNSTLHIVHSSFALHWISKIP 134 (245)
Q Consensus 112 LfP~~Svh~~~Ss~alHWLS~~P 134 (245)
=||++|.|.+++++++||+...+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHH
Confidence 47899999999999999976533
No 71
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.51 E-value=0.45 Score=43.42 Aligned_cols=152 Identities=24% Similarity=0.311 Sum_probs=81.2
Q ss_pred CCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC----CCceEEe--
Q 036170 29 TSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH----SRKYFAA-- 102 (245)
Q Consensus 29 ~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~----~~~~f~~-- 102 (245)
..+.+++.|.+|.+|-.|+.++..+-..-. ..+-+|...| +|.=-...-. .++++..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~------------~~~~~V~v~D-----inp~mL~vgkqRa~~~~l~~~~~ 160 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFG------------DRESKVTVLD-----INPHMLAVGKQRAKKRPLKASSR 160 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccC------------CCCceEEEEe-----CCHHHHHHHHHHHhhcCCCcCCc
Confidence 456699999999999999988554332111 1123455444 3321111110 0112111
Q ss_pred --ecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHH
Q 036170 103 --GVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQ 180 (245)
Q Consensus 103 --~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~ 180 (245)
-+.|.=-.==||++|.|...+++.+--..+++ ....+|| +
T Consensus 161 ~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~----------------------k~l~EAY----------------R 202 (296)
T KOG1540|consen 161 VEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ----------------------KALREAY----------------R 202 (296)
T ss_pred eEEEeCCcccCCCCCCcceeEEEecceecCCCHH----------------------HHHHHHH----------------H
Confidence 11122222238999999999988876544322 2344555 4
Q ss_pred hhccCCcc-----cccc---cch-----HHH---HHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCC
Q 036170 181 ELVAGGLM-----SQTT---FGI-----FFD---VFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 181 EL~~GG~l-----~~~~---~~~-----~~~---~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
-||||||+ ++.+ ... .++ .+...+....+.+..=-|-+. -+|+.||++..++++|
T Consensus 203 VLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG 273 (296)
T KOG1540|consen 203 VLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG 273 (296)
T ss_pred hcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC
Confidence 69999999 1211 111 111 233333333333322222222 3688999999999987
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.46 E-value=0.68 Score=43.39 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 115 NSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 115 ~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
++..|+++|.-.+||.-.. . ..+...|++.=++-|+|||++
T Consensus 259 ~~~fDlIvsNPPFH~g~~~----------------------~-----------~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQT----------------------S-----------LDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred CCCccEEEECCCccCCccc----------------------c-----------HHHHHHHHHHHHHhcCcCCEE
Confidence 5789999999999973110 0 124566777777889999999
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=92.34 E-value=2 Score=37.22 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhccCCccc--ccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 170 DIESFLNARAQELVAGGLMS--QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 170 D~~~FL~~Ra~EL~~GG~l~--~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
++..|++.=.+=|++||++. ..... .+.++++.|...|. .-+...+..+|+ .+..-.....+++.|.
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~----~~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 205 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSELS----GVERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRGL 205 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccc----CHHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcCC
Confidence 45667776677899999992 11111 12355555555564 444445555663 3333344456666664
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=92.25 E-value=1.1 Score=37.35 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.0
Q ss_pred EEEEeecCCCCcCcHHHH
Q 036170 33 FRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~ 50 (245)
-+|+|+||.+|..++.+.
T Consensus 21 ~~vLdlG~G~G~~~~~l~ 38 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLK 38 (179)
T ss_pred CeEEEeCCChhHHHHHHH
Confidence 479999999998877654
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.19 E-value=1.4 Score=37.86 Aligned_cols=19 Identities=11% Similarity=0.405 Sum_probs=15.8
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
.-+|.|+||.+|..+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCEEEEECcCccHHHHHHH
Confidence 3689999999999886654
No 76
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.14 E-value=1.2 Score=38.44 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHhhccCCcc
Q 036170 169 KDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 169 ~D~~~FL~~Ra~EL~~GG~l 188 (245)
.++..|++.=.+-|+|||.+
T Consensus 194 ~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 194 DFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred HHHHHHHHHHHHhcccCCEE
Confidence 45667888878889999999
No 77
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=91.62 E-value=1.9 Score=39.19 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=17.0
Q ss_pred eEEEEeecCCCCcCcHHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ 52 (245)
--+|.|+||.-|..++.+...
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHH
T ss_pred CCEEEEeCCCccHHHHHHHHH
Confidence 369999999999999988776
No 78
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=90.86 E-value=0.26 Score=45.13 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhhccCCcc
Q 036170 170 DIESFLNARAQELVAGGLM 188 (245)
Q Consensus 170 D~~~FL~~Ra~EL~~GG~l 188 (245)
||..|++-=.+-|++||.+
T Consensus 242 n~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLL 260 (325)
T ss_pred cHHHHHHHHHHHhccCceE
Confidence 7888999999999999999
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.70 E-value=3.4 Score=38.06 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.8
Q ss_pred EEEEeecCCCCcCcHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~ 51 (245)
-+|.|+||.+|.-++.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY 153 (307)
T ss_pred CEEEEEechhhHHHHHHHH
Confidence 5899999999998877643
No 80
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=90.09 E-value=0.57 Score=43.58 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=82.6
Q ss_pred EEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCC----CCCceEEeecCccc
Q 036170 33 FRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLP----HSRKYFAAGVPGFF 108 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~----~~~~~f~~~vpgSF 108 (245)
-+|+|+||..|.-++... ++ + + =.|+--| |+=.|..-|+.+. ....+|...+ .
T Consensus 117 k~VLDIGC~nGY~~frM~-------~~-----G------A-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~lpl--g- 173 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRML-------GR-----G------A-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFELPL--G- 173 (315)
T ss_pred CEEEEecCCCcHHHHHHh-------hc-----C------C-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEcCc--c-
Confidence 589999999999888662 21 1 1 1345555 6666666666543 2233444422 1
Q ss_pred ccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 109 QDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 109 y~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
-+.|=+.++.|.+||.--|=-+.. |-+ .|+.=.+-|++||.|
T Consensus 174 vE~Lp~~~~FDtVF~MGVLYHrr~-----------------------Pl~---------------~L~~Lk~~L~~gGeL 215 (315)
T PF08003_consen 174 VEDLPNLGAFDTVFSMGVLYHRRS-----------------------PLD---------------HLKQLKDSLRPGGEL 215 (315)
T ss_pred hhhccccCCcCEEEEeeehhccCC-----------------------HHH---------------HHHHHHHhhCCCCEE
Confidence 222323577888888544333221 212 233334568999999
Q ss_pred c-ccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 189 S-QTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 189 ~-~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
. ++-. +..-...-+++++.+..|.-=++.||..-++.++++.|-
T Consensus 216 vLETlv----------i~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF 260 (315)
T PF08003_consen 216 VLETLV----------IDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF 260 (315)
T ss_pred EEEEee----------ecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence 2 2100 000111236788888889888999999999999999883
No 81
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=89.85 E-value=5.4 Score=35.90 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 113 FPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
|++++.|=++|-.|++||=..-+...+ | ++-+..|+..=..-|++|++-
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~----------------P-----------~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHV----------------P-----------KKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccC----------------h-----------HHHHHHHhhhhhhhhccCcee
Confidence 889999999999999997553221110 1 345677777777788888887
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=89.59 E-value=0.44 Score=40.31 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.4
Q ss_pred CCCCceeEEEeccccccccC
Q 036170 113 FPNSTLHIVHSSFALHWISK 132 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~ 132 (245)
+|+++.|+++++.++||+..
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 67899999999999999743
No 83
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=89.58 E-value=2.7 Score=40.41 Aligned_cols=20 Identities=20% Similarity=0.032 Sum_probs=17.0
Q ss_pred EEEEeecCCCCcCcHHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ 52 (245)
-+|.|+||++|.-|+.+...
T Consensus 252 ~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999877653
No 84
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=1.2 Score=39.18 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
..-+|.++||.||.+|-.+-
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 45899999999999997653
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=88.33 E-value=3.3 Score=36.48 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=16.9
Q ss_pred CeEEEEeecCCCCcCcHHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
+..+|.|+||.+|..++.+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~ 128 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAK 128 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHH
Confidence 457899999999988776643
No 86
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=88.15 E-value=3 Score=40.24 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.9
Q ss_pred EEEEeecCCCCcCcHHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ 52 (245)
-+|.|+||+.|.-|+.+...
T Consensus 239 ~~VLD~cagpGgkt~~la~~ 258 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAEL 258 (431)
T ss_pred CEEEEeCCCccHHHHHHHHH
Confidence 58999999999999877543
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=87.94 E-value=4.5 Score=38.78 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=17.2
Q ss_pred eEEEEeecCCCCcCcHHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ 52 (245)
.-+|.|+||++|.-|+.+.+.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~ 265 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILEL 265 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHH
Confidence 358999999999998876543
No 88
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=87.64 E-value=3.4 Score=34.29 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=15.8
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
.-+|+|+||.+|.-++.+.
T Consensus 32 ~~~vLDlG~G~G~i~~~la 50 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALA 50 (170)
T ss_dssp TCEEEEETSTTSHHHHHHH
T ss_pred CCeEEEecCChHHHHHHHH
Confidence 4579999999998888764
No 89
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=86.48 E-value=6 Score=37.01 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=30.2
Q ss_pred CCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 115 NSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 115 ~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
....|++-+-+|||..=.. +.-..+||+.=++-|+|||.+
T Consensus 143 ~~~FDvVScQFalHY~Fes----------------------------------e~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFES----------------------------------EEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp TS-EEEEEEES-GGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred CCCcceeehHHHHHHhcCC----------------------------------HHHHHHHHHHHHHhcCCCCEE
Confidence 3588999999999995331 223467899999999999999
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=86.16 E-value=2.5 Score=32.00 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.8
Q ss_pred EEEEeecCCCCcCcHHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ 52 (245)
.+|.|.||.+|.-++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~ 21 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR 21 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHH
Confidence 58999999999988877654
No 91
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=84.80 E-value=5.7 Score=36.53 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred CeEEEEeecCCCCcCcHHHHHHH-------------HHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 036170 31 STFRVADLGCSTGPNTFIAMQNI-------------IEAIELKLFQASHKNPATVEFQVFFNDH 81 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~i-------------i~~i~~~~~~~~~~~~~~p~~~v~~nDl 81 (245)
.-.++.|+||.-|..++.++..- .+..+++..+.+. ...++|.+-|.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~ 131 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDY 131 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEeccc
Confidence 35899999999999999988775 3334444444432 23488888884
No 92
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=84.45 E-value=8.4 Score=37.16 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHHhhccCCcc
Q 036170 169 KDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 169 ~D~~~FL~~Ra~EL~~GG~l 188 (245)
+.-..+|..=++=|+|||+|
T Consensus 354 ~~q~~iL~~a~~~lkpgG~l 373 (445)
T PRK14904 354 GLQAELLDHAASLLKPGGVL 373 (445)
T ss_pred HHHHHHHHHHHHhcCCCcEE
Confidence 35567888888889999999
No 93
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=80.50 E-value=21 Score=34.19 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.7
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||+.|.-|+.+..
T Consensus 239 g~~VLDlcag~G~kt~~la~ 258 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILE 258 (426)
T ss_pred CCeEEEeCCCccHHHHHHHH
Confidence 36899999999999987653
No 94
>PRK00811 spermidine synthase; Provisional
Probab=78.95 E-value=13 Score=33.67 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.4
Q ss_pred CCeEEEEeecCCCCcCcHHHHH
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
+++-+|.|+||..|..+..++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~ 96 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK 96 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc
Confidence 4566899999999988776643
No 95
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=77.89 E-value=14 Score=32.93 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.8
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||+.|.-|+.+.+
T Consensus 72 g~~VLDl~ag~G~kt~~la~ 91 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISA 91 (264)
T ss_pred cCEEEEECCCchHHHHHHHH
Confidence 35899999999999987654
No 96
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=76.11 E-value=1.8 Score=37.25 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCH
Q 036170 165 TQFKKDIESFLNARAQELVAGGLMSQTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTP 230 (245)
Q Consensus 165 ~Q~~~D~~~FL~~Ra~EL~~GG~l~~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~ 230 (245)
+..-+|-..|+++.--| .=|. ..+.+...+.+.|.+||++|+|+-|++.+-|+=|-|+|.
T Consensus 16 ~aI~~~SKdFFqLkEvE--kLGS----KK~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 16 EAIFHDSKDFFQLKEVE--KLGS----KKQIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHhccHHHHHHHHHH--Hhcc----ccccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 33445777787764333 2111 135667788999999999999999999999999999964
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=75.58 E-value=13 Score=34.14 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=59.7
Q ss_pred EEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccccc
Q 036170 33 FRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDRL 112 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~rL 112 (245)
-+|+|+||.+|..++.+... . +..+|+..|+-. ++-.+.+..-+ ++ ..+-+.+.. +
T Consensus 66 grVLDLGcGsGilsl~la~r--------~----------~~~~V~gVDisp-~al~~Ar~n~~--~v--~~v~~D~~e-~ 121 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR--------C----------KPEKIVCVELNP-EFARIGKRLLP--EA--EWITSDVFE-F 121 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh--------C----------CCCEEEEEECCH-HHHHHHHHhCc--CC--EEEECchhh-h
Confidence 48999999999766554221 0 113566666543 33333333211 11 112233332 2
Q ss_pred CCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHH--hHHHHHHHHHHhhccCCcc
Q 036170 113 FPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKK--DIESFLNARAQELVAGGLM 188 (245)
Q Consensus 113 fP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~--D~~~FL~~Ra~EL~~GG~l 188 (245)
.+..+.|+++|.-.++++... ... ....|+.|.. ..+ .+..||+-.+.=|+|+|..
T Consensus 122 ~~~~kFDlIIsNPPF~~l~~~--d~~--~~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~ 179 (279)
T PHA03411 122 ESNEKFDVVISNPPFGKINTT--DTK--DVFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSA 179 (279)
T ss_pred cccCCCcEEEEcCCccccCch--hhh--hhhhhccCcc----------------ccccccHHHHHhhhHheecCCceE
Confidence 245688999998888886321 111 0112221110 001 2578888999999999977
No 98
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.51 E-value=2 Score=37.05 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHH
Q 036170 193 FGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPK 231 (245)
Q Consensus 193 ~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~e 231 (245)
+|..--.+.+++..||++|+|..|++.+-|+=|-|||.+
T Consensus 25 ~gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 25 KGIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred cCCchhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 455556889999999999999999999999999999864
No 99
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=74.43 E-value=34 Score=32.88 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=16.8
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||++|.-|+.+..
T Consensus 253 g~~VLDl~ag~G~kt~~la~ 272 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAE 272 (434)
T ss_pred cCEEEEeCCCCchhHHHHHH
Confidence 35899999999999987654
No 100
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=73.79 E-value=2.9 Score=31.61 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.6
Q ss_pred EEEEeecCCCCcCcHHHH
Q 036170 33 FRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~ 50 (245)
-+|+|+||..|..+..+.
T Consensus 21 ~~vldlG~G~G~~~~~l~ 38 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAA 38 (124)
T ss_pred CEEEEeCCCCCHHHHHHH
Confidence 499999999999888774
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=71.03 E-value=11 Score=31.78 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.0
Q ss_pred eEEEEeecCCCCcCcHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~ 50 (245)
.-+|.|+||.+|..++.+.
T Consensus 41 ~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 3589999999999888764
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=70.07 E-value=9.4 Score=35.45 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=14.3
Q ss_pred EEEeecCCCCcCcHHH
Q 036170 34 RVADLGCSTGPNTFIA 49 (245)
Q Consensus 34 ~IaD~GCS~G~Ns~~~ 49 (245)
+|+|+||.-|+-++.+
T Consensus 161 ~vlDlGCG~Gvlg~~l 176 (300)
T COG2813 161 KVLDLGCGYGVLGLVL 176 (300)
T ss_pred cEEEeCCCccHHHHHH
Confidence 9999999999877765
No 103
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=69.37 E-value=10 Score=34.07 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=49.1
Q ss_pred eEEEEeecCCCCcCcHHHHH------------HHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHH-----hhhCC
Q 036170 32 TFRVADLGCSTGPNTFIAMQ------------NIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTL-----FKTLP 94 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntL-----F~~L~ 94 (245)
.-+|.|+||.+|.-|..+.. .+++.++++.. .+.++++..|...-++..+ +.++|
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 35899999999999998877 34555544331 1347788877766555432 33333
Q ss_pred C-------------C--CceEEeecCcccccccCCC-Ccee
Q 036170 95 H-------------S--RKYFAAGVPGFFQDRLFPN-STLH 119 (245)
Q Consensus 95 ~-------------~--~~~f~~~vpgSFy~rLfP~-~Svh 119 (245)
- . -...+..+...|-+||... ++-+
T Consensus 115 Y~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg~~~ 155 (272)
T PRK00274 115 YNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPGSKA 155 (272)
T ss_pred ccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCCCcc
Confidence 1 0 1235667777787777543 4444
No 104
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=68.76 E-value=6 Score=33.02 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.5
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
..-+|.|+||.+|.-++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34589999999999888764
No 105
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=66.88 E-value=6.5 Score=34.86 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHH
Q 036170 7 RAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 7 ~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ 52 (245)
+....+++++.. +.. ..+.-+++|+||++|.-|..+...
T Consensus 58 r~~~kL~~~l~~-~~~------~~~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 58 RGGEKLKEALEE-FNI------DVKNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred hhHHHHHHHHHh-cCC------CCCCCEEEEcccCCCHHHHHHHHc
Confidence 444556667653 221 123468999999999999877544
No 106
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=66.49 E-value=6.1 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCChhhhccCccCcccCCH
Q 036170 197 FDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTP 230 (245)
Q Consensus 197 ~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~ 230 (245)
...+..+|+.|-+.|.|+++|-|....|++.|+-
T Consensus 13 ~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq 46 (81)
T cd08788 13 QHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ 46 (81)
T ss_pred HHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH
Confidence 4567889999999999999999999999999874
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=66.02 E-value=2.9 Score=37.55 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=37.1
Q ss_pred eEEEEeecCCCCcCcHHHHHHHHH-------------HHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCc
Q 036170 32 TFRVADLGCSTGPNTFIAMQNIIE-------------AIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRK 98 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ii~-------------~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~ 98 (245)
.-+|+|+||.+|.-++.+...+.. ..-+..+. + .+.+.+...|+-..+++.-|..+-.+++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~-n-----~~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKR-I-----VPEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHh-h-----ccCCEEEEcchhcccccCCccEEEECCC
Confidence 469999999999888876654210 00111111 1 2346788888766555545555544444
Q ss_pred eEE
Q 036170 99 YFA 101 (245)
Q Consensus 99 ~f~ 101 (245)
|+.
T Consensus 124 Y~~ 126 (241)
T PHA03412 124 FGK 126 (241)
T ss_pred CCC
Confidence 543
No 108
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=65.39 E-value=8 Score=33.16 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.5
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
..-+|.|+||.+|..|..+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred CcCEEEEECCCccHHHHHHH
Confidence 34699999999999997653
No 109
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=65.18 E-value=7.1 Score=34.11 Aligned_cols=52 Identities=8% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 165 TQFKKDIESFLNARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 165 ~Q~~~D~~~FL~~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
.|.+.++..-+. . +++||.+| ++.. .+.--..+.+|+.+|++||+|....-.
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~ 71 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYLPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGV 71 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 466677776663 4 99999999 3322 222234789999999999999877643
No 110
>PRK03612 spermidine synthase; Provisional
Probab=64.76 E-value=29 Score=34.29 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCCccc-ccc-cchHHHHHHHHHHHHHhcCCCChhhhccCccCcc
Q 036170 174 FLNARAQELVAGGLMS-QTT-FGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNH 226 (245)
Q Consensus 174 FL~~Ra~EL~~GG~l~-~~~-~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y 226 (245)
|++.=.+-|+|||.+. +.. ...--+.+..+.+.|.+.|. .-+.-..++|.|
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~ 449 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF 449 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc
Confidence 3434346699999993 211 11113455667777777776 222234456766
No 111
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=64.51 E-value=13 Score=31.82 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=74.3
Q ss_pred EEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCC--CCCce-EEeecCccccc
Q 036170 34 RVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLP--HSRKY-FAAGVPGFFQD 110 (245)
Q Consensus 34 ~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~--~~~~~-f~~~vpgSFy~ 110 (245)
.+.|+||..|...+..... .|+..++--|.-.+=.....+.+. .-.++ ++.+=...+..
T Consensus 20 l~lEIG~G~G~~l~~~A~~------------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~ 81 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR------------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR 81 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH------------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH
T ss_pred eEEEecCCCCHHHHHHHHH------------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh
Confidence 8999999999876655221 233444444443332222222211 11243 34444566688
Q ss_pred ccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc-c
Q 036170 111 RLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM-S 189 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l-~ 189 (245)
.++|++||+-++=.+.=-| |+.-- .|.++. . ..||+.=++=|+|||.+ .
T Consensus 82 ~~~~~~~v~~i~i~FPDPW----pK~rH-------~krRl~----~---------------~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 82 RLFPPGSVDRIYINFPDPW----PKKRH-------HKRRLV----N---------------PEFLELLARVLKPGGELYF 131 (195)
T ss_dssp HHSTTTSEEEEEEES---------SGGG-------GGGSTT----S---------------HHHHHHHHHHEEEEEEEEE
T ss_pred hcccCCchheEEEeCCCCC----cccch-------hhhhcC----C---------------chHHHHHHHHcCCCCEEEE
Confidence 8999999999988776666 32110 111221 1 24666777889999999 2
Q ss_pred ccccchHHHHHHHHHHHHHh-cCCCChhh--hccCccC---cccCCHHHHHHH
Q 036170 190 QTTFGIFFDVFGSCLMDMAK-MGITSNEK--IDSFNIP---NHHPTPKELESI 236 (245)
Q Consensus 190 ~~~~~~~~~~l~~~l~~mv~-eG~i~~e~--~d~fn~P---~y~ps~eEv~~~ 236 (245)
.+.... ....++..+.. .+...... .+-.+.| .+..|.-|-+..
T Consensus 132 ~TD~~~---y~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~T~yE~k~~ 181 (195)
T PF02390_consen 132 ATDVEE---YAEWMLEQFEESHPGFENIEESDDLHESPFDDDYIPTKYERKWL 181 (195)
T ss_dssp EES-HH---HHHHHHHHHHHHSTTEEEE-TESSGGCSCCCTTCCSSHHHHHHH
T ss_pred EeCCHH---HHHHHHHHHHhcCcCeEEcccCcccccCCCCCCCCCCHHHHHHH
Confidence 333333 23334444444 23333221 1112334 466676665543
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=64.49 E-value=7.3 Score=34.75 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=40.2
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceEEeecCccccc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQD 110 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~ 110 (245)
..-+|.|+||.+|..+..+...+ . . ....+|+-.|+-.+=-...-+..+ +--|.. ++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~----~----~-------~~~~~v~giD~s~~~l~~A~~~~~--~~~~~~---~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL----P----E-------ITTMQLFGLDISKVAIKYAAKRYP--QVTFCV---ASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc----c----c-------ccCCeEEEECCCHHHHHHHHHhCC--CCeEEE---eeccc
Confidence 34679999999998776653321 1 0 011366777764321111111111 111222 23333
Q ss_pred ccCCCCceeEEEeccc
Q 036170 111 RLFPNSTLHIVHSSFA 126 (245)
Q Consensus 111 rLfP~~Svh~~~Ss~a 126 (245)
--||++|+|+++|.++
T Consensus 145 lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 145 LPFADQSLDAIIRIYA 160 (272)
T ss_pred CCCcCCceeEEEEecC
Confidence 3377899999998654
No 113
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=62.21 E-value=1.1e+02 Score=26.83 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCch
Q 036170 7 RAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNF 86 (245)
Q Consensus 7 ~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDF 86 (245)
+=|.-|-+.+++.++ .... +|.++||.+|--+..+.. .-|.++.-=+|...+-+
T Consensus 9 RNk~pIl~vL~~~l~-------~~~~-~vLEiaSGtGqHa~~FA~------------------~lP~l~WqPSD~~~~~~ 62 (204)
T PF06080_consen 9 RNKDPILEVLKQYLP-------DSGT-RVLEIASGTGQHAVYFAQ------------------ALPHLTWQPSDPDDNLR 62 (204)
T ss_pred hCHhHHHHHHHHHhC-------ccCc-eEEEEcCCccHHHHHHHH------------------HCCCCEEcCCCCChHHH
Confidence 334455556655442 2233 899999999988776622 13557777799999988
Q ss_pred HHHhhhCCCC-----CceEEeecCcccccc----cCCCCceeEEEeccccccc
Q 036170 87 NTLFKTLPHS-----RKYFAAGVPGFFQDR----LFPNSTLHIVHSSFALHWI 130 (245)
Q Consensus 87 ntLF~~L~~~-----~~~f~~~vpgSFy~r----LfP~~Svh~~~Ss~alHWL 130 (245)
.++-.-+... ..-...-|...--.- -++..++|.++|.+.+|-.
T Consensus 63 ~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~ 115 (204)
T PF06080_consen 63 PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHIS 115 (204)
T ss_pred hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhc
Confidence 7776543211 110111111100000 1257788999998888874
No 114
>PRK04266 fibrillarin; Provisional
Probab=62.14 E-value=5.5 Score=35.08 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.5
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|+|+||++|..++.+..
T Consensus 73 g~~VlD~G~G~G~~~~~la~ 92 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSD 92 (226)
T ss_pred CCEEEEEccCCCHHHHHHHH
Confidence 46999999999998877643
No 115
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=61.63 E-value=8.1 Score=26.33 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhh
Q 036170 196 FFDVFGSCLMDMAKMGITSNEK 217 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~ 217 (245)
+-..|.++|+||+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 3457899999999999999874
No 116
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=61.09 E-value=7.7 Score=35.98 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=34.2
Q ss_pred EEEEeecCCCCcCcHHHHHH--------------HHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCch
Q 036170 33 FRVADLGCSTGPNTFIAMQN--------------IIEAIELKLFQASHKNPATVEFQVFFNDHPENNF 86 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDF 86 (245)
-.|+|+||.||.-|+.++.. +|+...+.+.+..- .--|.|.++|+-+-=|
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDAS 213 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccc
Confidence 47999999999999988753 45555555544321 2358899988765433
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=60.97 E-value=13 Score=30.50 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.4
Q ss_pred EEEEeecCCCCcCcHHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ 52 (245)
-+|.|+||..|..|..+++.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 48999999999999988764
No 118
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=60.96 E-value=16 Score=33.55 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHhhccCCccc-c----cccchHH-HHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCc
Q 036170 169 KDIESFLNARAQELVAGGLMS-Q----TTFGIFF-DVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 169 ~D~~~FL~~Ra~EL~~GG~l~-~----~~~~~~~-~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
+|...||.+=++-|+|||++. . +.....- -.+.+.....|=.|.-+-| -|.+++|+..+++.+|.
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWE---------KFINPEELTSILNANGA 242 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHH---------HcCCHHHHHHHHHhcCc
Confidence 589999999999999999991 1 1111100 0122333336666644444 46788999999988753
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=59.08 E-value=27 Score=30.29 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHH--------------HHHHHHHHHHHhhcCCCCCCCeeEE
Q 036170 10 ELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAM--------------QNIIEAIELKLFQASHKNPATVEFQ 75 (245)
Q Consensus 10 ~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~p~~~ 75 (245)
|+-.+.|+.+ .+..+- ..+-=++.|.||.+|.-|+..+ ...++.+++.+.+.+ .+-++
T Consensus 16 p~TK~EIRal-~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~ 87 (187)
T COG2242 16 PMTKEEIRAL-TLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLE 87 (187)
T ss_pred CCcHHHHHHH-HHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEE
Confidence 3455556533 233221 2223499999999999999887 346777777776654 34567
Q ss_pred EEeCCCCC
Q 036170 76 VFFNDHPE 83 (245)
Q Consensus 76 v~~nDlP~ 83 (245)
|.--|=|.
T Consensus 88 vv~g~Ap~ 95 (187)
T COG2242 88 VVEGDAPE 95 (187)
T ss_pred EEeccchH
Confidence 77766553
No 120
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=58.60 E-value=19 Score=30.91 Aligned_cols=60 Identities=7% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHhhccCCccccc----ccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHh
Q 036170 177 ARAQELVAGGLMSQT----TFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIK 238 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie 238 (245)
....+|+||-++.+. ..|.--..+..||..|+.+|+|+-..-..+.++ ..+.+++..+++
T Consensus 20 I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~--~~~~~~~~ei~~ 83 (224)
T PRK11534 20 IIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVA--SMSEQELLDIFD 83 (224)
T ss_pred HHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEEeCCCceEeC--CCCHHHHHHHHH
Confidence 567899999999432 122224578999999999999986654444433 246676666554
No 121
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.86 E-value=7.7 Score=33.61 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHH
Q 036170 194 GIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPK 231 (245)
Q Consensus 194 ~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~e 231 (245)
|.++....++|..||++|++..+++..-|.=|-|||..
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a 75 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEA 75 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchHH
Confidence 56688899999999999999999999999999999853
No 122
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=55.38 E-value=7.4 Score=32.24 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCC
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPEN 84 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~N 84 (245)
++..+++|+|||.|+-|-.++... .+.-.|+--|+...
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~-----------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRG-----------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTST-----------------TTEEEEEEEESSST
T ss_pred ccccEEEEcCCcccceeeeeeecc-----------------cccceEEEEecccc
Confidence 467999999999999877664333 12457888888766
No 123
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=55.14 E-value=10 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCChhhhc
Q 036170 202 SCLMDMAKMGITSNEKID 219 (245)
Q Consensus 202 ~~l~~mv~eG~i~~e~~d 219 (245)
..|.+|-+.|.|+++++.
T Consensus 6 ~~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHHcCCCCHHHHH
Confidence 578899999999999975
No 124
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=54.20 E-value=48 Score=31.45 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhhhc-cc-CCCCCeEEEEeecCCCCcCcHHHHH------------HHHHHHHHHHhhcCCCCCCCe
Q 036170 7 RAKELINEAIADKLDLKL-LK-IDTSSTFRVADLGCSTGPNTFIAMQ------------NIIEAIELKLFQASHKNPATV 72 (245)
Q Consensus 7 ~~~~~~~~ai~~~~~~~~-~~-~~~~~~~~IaD~GCS~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~p 72 (245)
-...||.+.|+..-..+. ++ -..-+.=+|.|.||.+|--|+.... .|++.-++....++.
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~------ 107 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL------ 107 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc------
Confidence 345677777765422221 10 0012345899999999998887643 334333333322211
Q ss_pred eEEEEeCCCCCCchHHHhhhCCCCCceEEeecCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccc
Q 036170 73 EFQVFFNDHPENNFNTLFKTLPHSRKYFAAGVPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQG 152 (245)
Q Consensus 73 ~~~v~~nDlP~NDFntLF~~L~~~~~~f~~~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~ 152 (245)
. . -+--+.|.=-+=.+|-..||++.|=|-=+||-.
T Consensus 108 --------------~----------~-ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-------------------- 142 (346)
T KOG1499|consen 108 --------------E----------D-VITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY-------------------- 142 (346)
T ss_pred --------------c----------c-eEEEeecceEEEecCccceeEEeehhhhHHHHH--------------------
Confidence 0 1 122223334444667788999998776666532
Q ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc
Q 036170 153 KRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGLM 188 (245)
Q Consensus 153 ~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l 188 (245)
+.=+...|-+|-+=|++||.+
T Consensus 143 ---------------EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 143 ---------------ESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred ---------------hhhhhhhhhhhhhccCCCceE
Confidence 233556677999999999999
No 125
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=53.02 E-value=27 Score=34.04 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=16.8
Q ss_pred eEEEEeecCCCCcCcHHHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQNI 53 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~i 53 (245)
..+|+|.||.+|+-++..++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 5899999999999988777653
No 126
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=52.40 E-value=5.4 Score=25.06 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=8.9
Q ss_pred CcccCCHHHHHHHHh
Q 036170 224 PNHHPTPKELESIIK 238 (245)
Q Consensus 224 P~y~ps~eEv~~~ie 238 (245)
|++.||.+|++.++.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 789999999987753
No 127
>PRK04148 hypothetical protein; Provisional
Probab=51.21 E-value=40 Score=27.56 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=27.9
Q ss_pred CeEEEEeecCCCCcCcHHHHHHH------HH----HHHHHHhhcCCCCCCCeeEEEEeCCCCCCchH
Q 036170 31 STFRVADLGCSTGPNTFIAMQNI------IE----AIELKLFQASHKNPATVEFQVFFNDHPENNFN 87 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~i------i~----~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFn 87 (245)
+..+|+|+||..|.+-...+.+. || ++. ..++ .-++++..|+-..|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~-~a~~--------~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVE-KAKK--------LGLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHH-HHHH--------hCCeEEECcCCCCCHH
Confidence 45789999999997333333221 11 111 1111 1258888998888775
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=50.48 E-value=11 Score=31.50 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhhccCCcc
Q 036170 170 DIESFLNARAQELVAGGLM 188 (245)
Q Consensus 170 D~~~FL~~Ra~EL~~GG~l 188 (245)
+...+|+.=.+-|+|||++
T Consensus 124 ~~~~~l~~~~~~LkpgG~l 142 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNF 142 (188)
T ss_pred HHHHHHHHHHHHccCCCEE
Confidence 4667788888899999999
No 129
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=50.09 E-value=17 Score=32.77 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred EEEEeecCCCCcCcHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~ 51 (245)
.+|+|+||.+|.-++.+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~ 134 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY 134 (284)
T ss_pred CEEEEEeccHhHHHHHHHH
Confidence 5899999999987776643
No 130
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=49.56 E-value=17 Score=31.13 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHhhccCCccccc----ccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 177 ARAQELVAGGLMSQT----TFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
....||+||-+|.+. ..|.--..+..||+.|+.+|+|+-..-..+.++ ..+.+++..++
T Consensus 24 I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~~~~g~~v~--~~~~~~~~ei~ 86 (221)
T PRK11414 24 LSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVP--EVSKRQLDEIN 86 (221)
T ss_pred HHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEecCCCceeec--CCCHHHHHHHH
Confidence 578899999999321 122224467999999999999986544433332 34566666554
No 131
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=48.91 E-value=33 Score=27.48 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHH
Q 036170 5 LERAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 5 ~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
++....+|.+.+.... . ...+.+|.|+||..|.-|+.+..
T Consensus 6 i~~~~~~i~~~~~~~~--~-----~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--E-----SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHhh--c-----cCCCCEEEEeCCChhHHHHHHHH
Confidence 4455555555554321 1 35689999999999999887754
No 132
>PLN02366 spermidine synthase
Probab=48.50 E-value=1.7e+02 Score=26.94 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=15.1
Q ss_pred CCeEEEEeecCCCCcCcHHH
Q 036170 30 SSTFRVADLGCSTGPNTFIA 49 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~ 49 (245)
+++=+|.|+||..|.-+..+
T Consensus 90 ~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred CCCCeEEEEcCCccHHHHHH
Confidence 45678999999999854443
No 133
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.96 E-value=20 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~ 50 (245)
--.|++|+.+ . .+ +.+--++.|+|+|+|+-|-.++
T Consensus 64 ~~KL~~ale~-F--~l----~~k~kv~LDiGsSTGGFTd~lL 98 (245)
T COG1189 64 GLKLEKALEE-F--EL----DVKGKVVLDIGSSTGGFTDVLL 98 (245)
T ss_pred HHHHHHHHHh-c--Cc----CCCCCEEEEecCCCccHHHHHH
Confidence 3457778865 2 22 3456889999999999998774
No 134
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.45 E-value=10 Score=33.06 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=30.3
Q ss_pred CeEEEEeecCCCCcCcHHHH-------------HHHHHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 036170 31 STFRVADLGCSTGPNTFIAM-------------QNIIEAIELKLFQASHKNPATVEFQVFFNDH 81 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDl 81 (245)
+.-+|+|+||.+|.-++... ...+++.++.+.+... .+.++-.|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g------~v~f~~~dv 102 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG------DVEFVVADV 102 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCC------ceEEEEcch
Confidence 34579999999999888654 2567777777655332 355555553
No 135
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=47.23 E-value=9.1 Score=33.03 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=30.8
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhh
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKI 218 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~ 218 (245)
.++.|++||-+| ++.. .+.--..+.+||..|++||+|....-
T Consensus 21 I~~g~~~~G~~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G 67 (238)
T TIGR02325 21 IAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQG 67 (238)
T ss_pred HHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 356799999999 3322 12223478999999999999998764
No 136
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=46.57 E-value=57 Score=30.46 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHhhccCCcccccc--cchHHHHHHHHHHHHHhcCCCChhhhccCccCc--ccCCHHHHHHHHhhCCce
Q 036170 175 LNARAQELVAGGLMSQTT--FGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPN--HHPTPKELESIIKTNKYF 243 (245)
Q Consensus 175 L~~Ra~EL~~GG~l~~~~--~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~--y~ps~eEv~~~ie~~G~f 243 (245)
|+-=+.-+.|||.|.-++ ..+-.+.++.+|.... +| -|| -.||..|+.++++.+|--
T Consensus 232 l~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHHHcCCc
Confidence 445567799999993322 1222456666666522 12 234 356889999998888753
No 137
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=46.40 E-value=57 Score=31.76 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.5
Q ss_pred EEEEeecCCCCcCcHHHH
Q 036170 33 FRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~ 50 (245)
-+|+|+||.+|..++.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA 270 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA 270 (423)
T ss_pred CEEEEEeChhhHHHHHHH
Confidence 389999999999988664
No 138
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=46.37 E-value=11 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=32.7
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc-cC
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID-SF 221 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d-~f 221 (245)
.++.++.||.+| ++.. .+.--..+.+|+++|++||+|....-. +|
T Consensus 13 I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G~GTf 63 (233)
T TIGR02404 13 ITHGQYKEGDYLPSEHELMDQYGASRETVRKALNLLTEAGYIQKIQGKGSI 63 (233)
T ss_pred HHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCceEE
Confidence 456799999999 3322 222234789999999999999988754 44
No 139
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=46.15 E-value=21 Score=31.69 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.7
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
..+|.|+||.+|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 46899999999998887653
No 140
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=46.11 E-value=35 Score=28.97 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhh
Q 036170 196 FFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKT 239 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~ 239 (245)
.|+.|-+-++.|+++|.++++..+ +.....+++|+-+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 588888999999999999999765 45568999999888864
No 141
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=45.85 E-value=19 Score=30.55 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=40.2
Q ss_pred HHHHhhccCCccccc----ccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 177 ARAQELVAGGLMSQT----TFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
....+++||-++.+. ..+.--..+..||..|+.+|+|+...-..+.++- .+.++++.++
T Consensus 24 I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~~~G~~V~~--~~~~~~~ei~ 86 (212)
T TIGR03338 24 ILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRNEKNRGVFVRE--ISLAEADEIY 86 (212)
T ss_pred HHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEEecCCCeEEec--CCHHHHHHHH
Confidence 456799999999432 2233345789999999999999876555555443 4566665544
No 142
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=45.80 E-value=62 Score=28.67 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.0
Q ss_pred eEEEEeecCCCCcCcHHHHHH------------HHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCc
Q 036170 32 TFRVADLGCSTGPNTFIAMQN------------IIEAIELKLFQASHKNPATVEFQVFFNDHPENN 85 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~ND 85 (245)
.-+|.|+||..|.-|..+... +++.++++... .+.+.++..|.-.-|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVD 88 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCC
Confidence 358999999999999988874 45555554421 124666666654333
No 143
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=45.77 E-value=5.3 Score=39.49 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=17.5
Q ss_pred cccCCCCceeEEEecccc-ccccC
Q 036170 110 DRLFPNSTLHIVHSSFAL-HWISK 132 (245)
Q Consensus 110 ~rLfP~~Svh~~~Ss~al-HWLS~ 132 (245)
+=-||+++.|++||+-|+ .|.+.
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred cccCCccchhhhhcccccccchhc
Confidence 334999999999999886 46433
No 144
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=45.59 E-value=54 Score=32.36 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=61.9
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCC--CCceEEeecCcc
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPH--SRKYFAAGVPGF 107 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~--~~~~f~~~vpgS 107 (245)
.+.-.+.|+||..|...+..... .|+.-++--|.-.+=...+.+.... -.++.+..-...
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~------------------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~ 407 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKM------------------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD 407 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHh------------------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 34678999999999877654211 2233333333332222222222111 124433322334
Q ss_pred cccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCc
Q 036170 108 FQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGL 187 (245)
Q Consensus 108 Fy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 187 (245)
+..+.||++|||-+|-.+.=-| |+.-- .|.++. . ..||+.=+.=|+|||.
T Consensus 408 ~~~~~~~~~sv~~i~i~FPDPW----pKkrh-------~krRl~----~---------------~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 408 LILNDLPNNSLDGIYILFPDPW----IKNKQ-------KKKRIF----N---------------KERLKILQDKLKDNGN 457 (506)
T ss_pred HHHHhcCcccccEEEEECCCCC----CCCCC-------cccccc----C---------------HHHHHHHHHhcCCCCE
Confidence 4667889999999999888777 43211 122321 1 2356667778999999
Q ss_pred c
Q 036170 188 M 188 (245)
Q Consensus 188 l 188 (245)
+
T Consensus 458 i 458 (506)
T PRK01544 458 L 458 (506)
T ss_pred E
Confidence 9
No 145
>PRK11524 putative methyltransferase; Provisional
Probab=43.79 E-value=42 Score=30.26 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhccCCcc
Q 036170 171 IESFLNARAQELVAGGLM 188 (245)
Q Consensus 171 ~~~FL~~Ra~EL~~GG~l 188 (245)
+..+|+.=.+=|++||.|
T Consensus 59 l~~~l~~~~rvLK~~G~i 76 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTM 76 (284)
T ss_pred HHHHHHHHHHHhCCCcEE
Confidence 456666667788999999
No 146
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=43.17 E-value=11 Score=33.30 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.4
Q ss_pred eEEEEeecCCCCcCcHH
Q 036170 32 TFRVADLGCSTGPNTFI 48 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~ 48 (245)
.-+|+|+||.+|..++.
T Consensus 120 ~~~VLDiGcGsG~l~i~ 136 (250)
T PRK00517 120 GKTVLDVGCGSGILAIA 136 (250)
T ss_pred CCEEEEeCCcHHHHHHH
Confidence 46899999999965543
No 147
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=42.98 E-value=13 Score=33.64 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.0
Q ss_pred EEEEeecCCCCcCcHHH
Q 036170 33 FRVADLGCSTGPNTFIA 49 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~ 49 (245)
-+|.|+||.+|..++.+
T Consensus 161 ~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAA 177 (288)
T ss_pred CEEEEeCCChhHHHHHH
Confidence 68999999999766543
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=42.60 E-value=13 Score=32.46 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=19.7
Q ss_pred cCCCCceeEEEeccccccccCCCccc
Q 036170 112 LFPNSTLHIVHSSFALHWISKIPEEI 137 (245)
Q Consensus 112 LfP~~Svh~~~Ss~alHWLS~~P~~~ 137 (245)
-||++|.|.++-+-+|+=+.+ |..+
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~v 94 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEV 94 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHH
Confidence 389999999999888887655 5444
No 149
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=42.51 E-value=19 Score=33.33 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.0
Q ss_pred cCCCCceeEEEeccccccccC
Q 036170 112 LFPNSTLHIVHSSFALHWISK 132 (245)
Q Consensus 112 LfP~~Svh~~~Ss~alHWLS~ 132 (245)
.+++.|+|...|...+||||.
T Consensus 98 p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 98 PFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CCCCCccccchhhhhhhhhhh
Confidence 478899999999999999976
No 150
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=42.43 E-value=16 Score=31.59 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc-cCc
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID-SFN 222 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn 222 (245)
.++.|++||.+| ++.. .+.--..+.+||..|++||+|....-. .|-
T Consensus 14 I~~g~~~~g~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~GtfV 65 (230)
T TIGR02018 14 IRSGEWPPGHRIPSEHELVAQYGCSRMTVNRALRELTDAGLLERRQGVGTFV 65 (230)
T ss_pred HHhCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEEE
Confidence 346799999999 4322 222234789999999999999988754 443
No 151
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=42.22 E-value=16 Score=31.82 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=17.1
Q ss_pred EEEEeecCCCCcCcHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~ 51 (245)
-+|.|+||..|+|++.+.+
T Consensus 36 ~rvLd~GCG~G~da~~LA~ 54 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAE 54 (213)
T ss_pred CeEEEeCCCchhHHHHHHh
Confidence 5999999999999998864
No 152
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=41.34 E-value=71 Score=29.26 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=35.7
Q ss_pred eEEEEeecCCCCcCcHHHHHH------------HHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCch
Q 036170 32 TFRVADLGCSTGPNTFIAMQN------------IIEAIELKLFQASHKNPATVEFQVFFNDHPENNF 86 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDF 86 (245)
.-+|.|+||..|.-|..++.. +++.++++....+ ..+.++++..|.-..|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~----~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP----LASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECCHhhhcc
Confidence 348999999999999888763 4666666654321 12358888888766554
No 153
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=40.07 E-value=23 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHhcCC
Q 036170 172 ESFLNARAQELVAGGLMSQTTFGIFFDVFGSCLMDMAKMGI 212 (245)
Q Consensus 172 ~~FL~~Ra~EL~~GG~l~~~~~~~~~~~l~~~l~~mv~eG~ 212 (245)
..+|+.=.+-|+|||++.-. ....+.+.+++..|.+.|.
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~--~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVID--AILLETVNNALSALENIGF 163 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEE--eecHHHHHHHHHHHHHcCC
Confidence 44566666789999998311 1124566777777777785
No 154
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=39.61 E-value=17 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.7
Q ss_pred cCcccCCHHHHHHHHh
Q 036170 223 IPNHHPTPKELESIIK 238 (245)
Q Consensus 223 ~P~y~ps~eEv~~~ie 238 (245)
+|++.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999987764
No 155
>PRK14968 putative methyltransferase; Provisional
Probab=38.49 E-value=19 Score=29.38 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhccCCcc
Q 036170 171 IESFLNARAQELVAGGLM 188 (245)
Q Consensus 171 ~~~FL~~Ra~EL~~GG~l 188 (245)
...|++.-.+-|+|||.+
T Consensus 127 ~~~~i~~~~~~Lk~gG~~ 144 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRI 144 (188)
T ss_pred HHHHHHHHHHhcCCCeEE
Confidence 456788888899999988
No 156
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=37.75 E-value=1.1e+02 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~ 50 (245)
.|.+...+.+.+.+ ..-.+|.|+||.+|.+|-.+-
T Consensus 57 ~P~~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 57 APSMVARMLEALDL-------KPGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp -HHHHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHH
Confidence 45566666565532 224799999999999998665
No 157
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.40 E-value=31 Score=32.16 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.0
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||.+|.+++.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46899999999999987764
No 158
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=37.28 E-value=32 Score=27.20 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCChhh
Q 036170 198 DVFGSCLMDMAKMGITSNEK 217 (245)
Q Consensus 198 ~~l~~~l~~mv~eG~i~~e~ 217 (245)
..|.++|+||+++|.|+++-
T Consensus 14 ~~L~~tLDe~v~~g~itp~l 33 (109)
T KOG3463|consen 14 NALQKTLDELVSDGVITPSL 33 (109)
T ss_pred HHHHHHHHHHHHcCCCCHHH
Confidence 47899999999999999874
No 159
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.00 E-value=1e+02 Score=29.15 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHhhcc----CCcc------------------c---------ccccchHHHHHHHHH
Q 036170 156 VKEVAEAYSTQFKKDIESFLNARAQELVA----GGLM------------------S---------QTTFGIFFDVFGSCL 204 (245)
Q Consensus 156 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~----GG~l------------------~---------~~~~~~~~~~l~~~l 204 (245)
|++.+..-+.|...-+...+ ++.|.+ |||. . +++.......+.++|
T Consensus 247 p~~ek~~vR~~La~sL~aVi---sQ~L~~~~~g~GRv~~~EIli~TpAvrnlIre~K~~qi~s~iqtG~~~GM~T~dq~L 323 (353)
T COG2805 247 PAEEKDQVRSQLAESLRAVI---SQRLLPKKDGGGRVAAFEILINTPAVRNLIREGKTHQIPSLIQTGQQLGMQTFDQSL 323 (353)
T ss_pred ChhhhHHHHHHHHHHHHHHH---hhhceeccCCCceeeeehHHhCCHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHH
Confidence 56666666777666665555 456766 8887 0 112223345789999
Q ss_pred HHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 205 MDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 205 ~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
.+|+.+|+|+.|.... +.++++|+...+
T Consensus 324 ~~l~~~g~It~e~a~~-----~a~~~~e~~~~l 351 (353)
T COG2805 324 AQLYKEGLITLETALE-----AAPDPKELARLL 351 (353)
T ss_pred HHHHHcCCCCHHHHHH-----hcCCcHHHHHHh
Confidence 9999999999997654 356667776554
No 160
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=36.51 E-value=18 Score=33.52 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.8
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
+.-++.|+||.||--|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 46899999999998887664
No 161
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=36.45 E-value=37 Score=23.82 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccCCc
Q 036170 161 EAYSTQFKKDIESFLNARAQELVAGGL 187 (245)
Q Consensus 161 ~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 187 (245)
+.+.+-|..||..++..++.+|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 456677888999999999999998887
No 162
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=35.87 E-value=1.8e+02 Score=27.62 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=60.2
Q ss_pred CeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCCCceE---EeecCcc
Q 036170 31 STFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHSRKYF---AAGVPGF 107 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~~~~f---~~~vpgS 107 (245)
..-..+|.|-..|..+=.+++ ++ |.+..+==|+|.=+-.. +++ +--|.|-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~--------~f----------p~ik~infdlp~v~~~a---------~~~~~gV~~v~gd 229 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS--------KY----------PHIKGINFDLPFVLAAA---------PYLAPGVEHVAGD 229 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH--------hC----------CCCceeecCHHHHHhhh---------hhhcCCcceeccc
Confidence 466789999998876655422 22 23444444444322111 222 6667788
Q ss_pred cccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHHHhhccCCc
Q 036170 108 FQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARAQELVAGGL 187 (245)
Q Consensus 108 Fy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~ 187 (245)
+++- .|+.- .+|--|.||=+ . .+|...||+.=.+-|.|||+
T Consensus 230 mfq~-~P~~d--aI~mkWiLhdw-------t-----------------------------DedcvkiLknC~~sL~~~Gk 270 (342)
T KOG3178|consen 230 MFQD-TPKGD--AIWMKWILHDW-------T-----------------------------DEDCVKILKNCKKSLPPGGK 270 (342)
T ss_pred cccc-CCCcC--eEEEEeecccC-------C-----------------------------hHHHHHHHHHHHHhCCCCCE
Confidence 8888 88876 66665555532 1 25899999999999999999
Q ss_pred c
Q 036170 188 M 188 (245)
Q Consensus 188 l 188 (245)
+
T Consensus 271 I 271 (342)
T KOG3178|consen 271 I 271 (342)
T ss_pred E
Confidence 9
No 163
>PRK14999 histidine utilization repressor; Provisional
Probab=35.80 E-value=22 Score=31.00 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc-cCc
Q 036170 178 RAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID-SFN 222 (245)
Q Consensus 178 Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn 222 (245)
+..+++||.+| ++.. .+.--..+.+||..|++||+|....-. +|-
T Consensus 26 ~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~GkGTfV 76 (241)
T PRK14999 26 AGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFV 76 (241)
T ss_pred HcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCcEEEE
Confidence 45799999999 4322 222234789999999999999887643 443
No 164
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=35.66 E-value=47 Score=30.39 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.2
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||.+|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 35899999999999988764
No 165
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=35.32 E-value=55 Score=28.18 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHhhccCCcccccc----cchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 177 ARAQELVAGGLMSQTT----FGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
.-..+|+||=++++.. .|.-...+..||..|+.||+|+..--..+.++ -.|.++++.+.
T Consensus 29 Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~p~rG~~V~--~~~~~~~~ei~ 91 (230)
T COG1802 29 ILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIEPNRGAFVA--PLSLAEAREIF 91 (230)
T ss_pred HHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEecCCCCCeeC--CCCHHHHHHHH
Confidence 5678999999994322 22223467899999999999998855555443 34666666544
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=34.82 E-value=44 Score=29.43 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.8
Q ss_pred CeEEEEeecCCCCcCcHHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
+.-+|.|+||..|.-|..+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 346899999999999988865
No 167
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=34.74 E-value=43 Score=31.90 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHH
Q 036170 7 RAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 7 ~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~ 50 (245)
++.-.|++|+......+...-....-.++.|+|||.|+-|-.++
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 34446788875432110000001345799999999999997664
No 168
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=34.67 E-value=23 Score=32.66 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=13.8
Q ss_pred EEEEeecCCCCcCcHHH
Q 036170 33 FRVADLGCSTGPNTFIA 49 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~ 49 (245)
-+|.|+||.||--+|.+
T Consensus 163 ~~vLDvG~GSGILaiaA 179 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAA 179 (295)
T ss_dssp SEEEEES-TTSHHHHHH
T ss_pred CEEEEeCCcHHHHHHHH
Confidence 39999999999887766
No 169
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=34.00 E-value=51 Score=26.33 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 196 FFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
.|+.+-+-++.|+++|.++++..+ +.....+++|+.+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 478888889999999999999865 667888888887643
No 170
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=33.61 E-value=27 Score=30.47 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=17.8
Q ss_pred eEEEEeecCCCCcCcHHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~~ 52 (245)
.-+|.|.||..|.|++.+.+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC
Confidence 359999999999999987653
No 171
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=33.29 E-value=28 Score=30.53 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=33.2
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc-cCccC
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID-SFNIP 224 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn~P 224 (245)
....++.||.+| ++.. .+.--..+.+||.+|++||+|....-. +|-.+
T Consensus 20 I~~G~~~~G~~LPsE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~~G~GtfV~~ 73 (236)
T COG2188 20 IESGELPPGDKLPSERELAEQFGVSRMTVRKALDELVEEGLIVRRQGKGTFVAS 73 (236)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEEecCeeEEcC
Confidence 456799999999 3321 122233789999999999999887653 44443
No 172
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=32.87 E-value=46 Score=28.99 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhccCcc
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKIDSFNI 223 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~ 223 (245)
....+|+||.+| ++.. .+.--..+..||+.|..+|+|+-..-..+.+
T Consensus 20 I~~g~l~pG~~LPsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~~G~~V 71 (251)
T PRK09990 20 IVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRGSFV 71 (251)
T ss_pred HHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEE
Confidence 567899999999 5432 3333457899999999999998765443333
No 173
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=30.91 E-value=30 Score=30.17 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
.+..+++||-+| ++.. .+.--..+.+||.+|++||+|....-.
T Consensus 18 I~~g~~~~G~~LPsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~G~ 65 (240)
T PRK09764 18 IARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGS 65 (240)
T ss_pred HHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCc
Confidence 356789999999 4322 222244789999999999999977643
No 174
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=30.82 E-value=30 Score=30.09 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
..+.++.||-+| ++.. .+.--..+.+|+.+|++||+|....-.
T Consensus 22 I~~G~~~~g~kLPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~ 69 (241)
T PRK11402 22 IAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGK 69 (241)
T ss_pred HHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCc
Confidence 456799999999 3221 222244789999999999999987643
No 175
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=29.54 E-value=43 Score=29.60 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHhhccCCcc-ccc----ccchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 177 ARAQELVAGGLM-SQT----TFGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
.+..+++||++| ++. ..|.--..+..|+..|..+|+|+-..-.
T Consensus 23 I~~g~~~~G~~LP~EreLae~fgVSR~~vREAl~~L~a~Glve~r~G~ 70 (241)
T COG2186 23 IVSGELPPGDRLPSERELAERFGVSRTVVREALKRLEAKGLVEIRQGS 70 (241)
T ss_pred HHcCCCCCCCCCCCHHHHHHHHCCCcHHHHHHHHHHHHCCCeeecCCC
Confidence 788999999999 221 2232245789999999999999876543
No 176
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=28.94 E-value=78 Score=30.44 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.5
Q ss_pred EEEEeecCCCCcCcHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~ 51 (245)
-+|+|+||.+|.-|+.+..
T Consensus 299 ~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CEEEEEeccCCHHHHHHHH
Confidence 5899999999999887754
No 177
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=28.79 E-value=55 Score=28.67 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhh
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKI 218 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~ 218 (245)
....+|+||-+| ++.. .+.--..+..||..|..+|+|+...-
T Consensus 22 I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~ 68 (257)
T PRK10225 22 IIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG 68 (257)
T ss_pred HHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 467899999999 4422 33335578999999999999986643
No 178
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=70 Score=27.20 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHH
Q 036170 197 FDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESII 237 (245)
Q Consensus 197 ~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~i 237 (245)
-+.+..+|.+|+.+|+++.-+-..-.+-+|.+|+||.-..|
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmI 108 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMI 108 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHH
Confidence 56788999999999998765544556788999999976554
No 179
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=28.29 E-value=56 Score=26.61 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHhhccCCcc------cccc----cchHHHHHHHHHHHHHhcCCCChhhhc-cCccC
Q 036170 156 VKEVAEAYSTQFKKDIESFLNARAQELVAGGLM------SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID-SFNIP 224 (245)
Q Consensus 156 ~~~v~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l------~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn~P 224 (245)
|..+...|.+||++||-..|+.|..+=+..--- .+.. ...-|..|..=..-|-.+|++.-++-+ .+.|-
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV~AN~vYnEyI~Dk~HvHMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~ 89 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRVNANKVYNEYIQDKDHVHMNATRWTSLTEFVKYLGREGKCKVDETEKGWFIS 89 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EEEHHHHHHHHTTSS----GGGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCeechhHHHHHHhcCccceeecccccchHHHHHHHHhhCCeeEeecCCCceEEE
Confidence 556889999999999999999987654443211 0110 122377788888889999999877765 67778
Q ss_pred cccCCHHHHHH
Q 036170 225 NHHPTPKELES 235 (245)
Q Consensus 225 ~y~ps~eEv~~ 235 (245)
+..++++.+..
T Consensus 90 yID~~pe~l~r 100 (127)
T PF10357_consen 90 YIDRSPETLAR 100 (127)
T ss_dssp E--SSHHHHHH
T ss_pred eeCCCHHHHHH
Confidence 88888877643
No 180
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=28.01 E-value=61 Score=27.93 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCC
Q 036170 30 SSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPE 83 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~ 83 (245)
.++++|-..|||+|-=.-.+.=-+-+ ..... ..-.++|+-+|+-.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e----~~~~~-----~~~~~~I~atDi~~ 74 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLE----LLPGA-----LGWDFRILATDISP 74 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHH----HH-S------TT-SEEEEEEES-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHH----Hhccc-----CCCceEEEEEECCH
Confidence 47899999999999644333222222 11111 12268999999743
No 181
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=27.91 E-value=79 Score=29.52 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=14.1
Q ss_pred CCeEEEEeecCCCCcCcHH
Q 036170 30 SSTFRVADLGCSTGPNTFI 48 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~ 48 (245)
+...+|+|+||.+|.-..+
T Consensus 113 ~~~~~vLDIGtGag~I~~l 131 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPL 131 (321)
T ss_pred CCCceEEEecCCccHHHHH
Confidence 4579999999988844433
No 182
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=27.74 E-value=60 Score=27.45 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHhcCCCChhhhccCccC---cccCCHHHHHHHH
Q 036170 194 GIFFDVFGSCLMDMAKMGITSNEKIDSFNIP---NHHPTPKELESII 237 (245)
Q Consensus 194 ~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P---~y~ps~eEv~~~i 237 (245)
|..-....++..|.|.||+|++++.|+..+- |..|+.++.+++.
T Consensus 79 GpaQ~avA~AVaD~V~eG~iP~~~addl~Iiv~Vfi~p~a~D~~kiy 125 (160)
T TIGR03126 79 GPAQAAVAKAVADSVEEGIIPKDEADDLVIIVSVFIHPEAKDDRKIY 125 (160)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhhCcEEEEEEEEeccccccHHHHH
Confidence 3444577899999999999999999876542 3455555555544
No 183
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=27.62 E-value=32 Score=31.20 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHhHHHHHHHHHHhhccCCcccc----cccchHHHHHHHHHHHHHhcCCCChhhhccCc
Q 036170 166 QFKKDIESFLNARAQELVAGGLMSQ----TTFGIFFDVFGSCLMDMAKMGITSNEKIDSFN 222 (245)
Q Consensus 166 Q~~~D~~~FL~~Ra~EL~~GG~l~~----~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn 222 (245)
++-.|-...|+. ....||++.+ ...|.--..++.++++|.+.|+|+.+|....|
T Consensus 192 ~L~~~e~~il~~---i~~~GGri~Q~eL~r~lglsktTvsR~L~~LEk~GlIe~~K~G~~n 249 (258)
T COG2512 192 DLNEDEKEILDL---IRERGGRITQAELRRALGLSKTTVSRILRRLEKRGLIEKEKKGRTN 249 (258)
T ss_pred CCCHHHHHHHHH---HHHhCCEEeHHHHHHhhCCChHHHHHHHHHHHhCCceEEEEeCCee
Confidence 334444444443 2235888732 22333345678999999999999999987665
No 184
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=27.23 E-value=68 Score=20.66 Aligned_cols=39 Identities=8% Similarity=0.168 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHh
Q 036170 198 DVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIK 238 (245)
Q Consensus 198 ~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie 238 (245)
..+..+++.|+++|++..+.... .-.|..+.+....++.
T Consensus 25 ~~v~~~l~~L~~~g~i~~~~~~~--~~~~~~~~~~~~~~~~ 63 (66)
T smart00418 25 STVSHHLKKLREAGLVESRREGK--RVYYSLTDEKVADLLE 63 (66)
T ss_pred HHHHHHHHHHHHCCCeeeeecCC--EEEEEEchHHHHHHHH
Confidence 46788999999999998665332 2346667767776665
No 185
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=26.70 E-value=38 Score=29.24 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.8
Q ss_pred EEEEeecCCCCcCcHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~ 51 (245)
-+++|+||.+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 4899999999988886544
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=26.51 E-value=77 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~ 51 (245)
...+.+|+-..+. .. -..-++.|++|.+|.-++.+++
T Consensus 33 ~~~vrea~f~~l~-~~-----~~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 33 TRVVRELFFNILR-PE-----IQGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred hHHHHHHHHHHHH-Hh-----cCCCEEEEecCCCcHHHHHHHh
Confidence 3455566654442 11 1235799999999999998876
No 187
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=26.08 E-value=38 Score=29.23 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=32.2
Q ss_pred HHHHhhccCCcc-ccc----ccchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 177 ARAQELVAGGLM-SQT----TFGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
....+|+||.+| ++. ..|.--..+..||..|..+|+|+-..-.
T Consensus 19 I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~~~~~~ 66 (235)
T TIGR02812 19 IWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 66 (235)
T ss_pred HHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 457899999999 542 2333355789999999999999865443
No 188
>PLN03075 nicotianamine synthase; Provisional
Probab=25.97 E-value=47 Score=30.72 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=15.6
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
.+=+|+|+||..||-|...+
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 45689999999998766553
No 189
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=25.91 E-value=69 Score=27.10 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHhcCCCChhhhccCccC---cccCCHHHHHHHHh
Q 036170 194 GIFFDVFGSCLMDMAKMGITSNEKIDSFNIP---NHHPTPKELESIIK 238 (245)
Q Consensus 194 ~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P---~y~ps~eEv~~~ie 238 (245)
|..-....++..|.|+||+|++++.++..+= |..|..++.+++.+
T Consensus 77 GpaQaavA~AVaD~V~eG~iP~~~a~dl~Iiv~Vfi~p~a~D~~kiy~ 124 (159)
T PF08714_consen 77 GPAQAAVAKAVADAVEEGIIPKDEADDLVIIVSVFIHPDALDDKKIYR 124 (159)
T ss_dssp THHHHHHHHHHHHHHHTTSS-TTTGGGEEEEEEEE--TT---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCcEEEEEEEEeCccccCHHHHHH
Confidence 3444578899999999999999999876542 34466666665543
No 190
>PRK03837 transcriptional regulator NanR; Provisional
Probab=25.78 E-value=84 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhccC
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKIDSF 221 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d~f 221 (245)
....+|+||-+| ++.. .+.--..+.+||..|..+|+|+-..-...
T Consensus 26 I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~~~~G~ 75 (241)
T PRK03837 26 IRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQISHGERA 75 (241)
T ss_pred HHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCce
Confidence 688999999999 4422 23335578999999999999987644333
No 191
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=25.74 E-value=1e+02 Score=27.31 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=30.2
Q ss_pred cCcccccccCCCCceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHHHHHH
Q 036170 104 VPGFFQDRLFPNSTLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFLNARA 179 (245)
Q Consensus 104 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL~~Ra 179 (245)
-||-+|+..||.+-+ + +|..|.+.. ..|..| + .+-.+|..+|..+||.==+
T Consensus 133 ~~~~~~N~~fpg~~i------------a-MP~~L~~~~-v~y~dG------t-----~at~~q~a~DVv~FL~w~a 183 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAI------------A-MPPPLSDGQ-VEYDDG------T-----PATVDQMAKDVVNFLAWAA 183 (219)
T ss_dssp STTSEEETTSTTSEE------------S-S--TSSTTS-S-BTTT------B--------HHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCcc------------c-chhhhhhhc-ccccCC------C-----cchHHHHHHHHHHHHHHHc
Confidence 688999999987543 2 376665532 222222 2 3445688999999997644
No 192
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=25.57 E-value=34 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.1
Q ss_pred EEEeecCCCCcCcHHHH
Q 036170 34 RVADLGCSTGPNTFIAM 50 (245)
Q Consensus 34 ~IaD~GCS~G~Ns~~~~ 50 (245)
+|.|+||..|.-++.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999998877654
No 193
>PF06256 Nucleo_LEF-12: Nucleopolyhedrovirus LEF-12 protein; InterPro: IPR009365 This family consists of several Nucleopolyhedrovirus late expression factor-12 (LEF-12) proteins. The function of this family is unknown [,].
Probab=24.64 E-value=71 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHhcCCCChhhhccCcc
Q 036170 194 GIFFDVFGSCLMDMAKMGITSNEKIDSFNI 223 (245)
Q Consensus 194 ~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~ 223 (245)
+.+.+.+..++++|+..|-|++.+.++..+
T Consensus 13 ~~~~~~~~~~ld~M~~~geit~~Da~sLCl 42 (185)
T PF06256_consen 13 QDFADMMKRTLDEMVEHGEITRADADSLCL 42 (185)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhhcceee
Confidence 445778899999999999999998876544
No 194
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=24.45 E-value=39 Score=33.32 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.4
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|.|+||.+|..++.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CCEEEEccCchhHHHHHHHH
Confidence 46899999999998886643
No 195
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=24.30 E-value=64 Score=30.40 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=17.0
Q ss_pred EEEEeecCCCCcCcHHHHHH
Q 036170 33 FRVADLGCSTGPNTFIAMQN 52 (245)
Q Consensus 33 ~~IaD~GCS~G~Ns~~~~~~ 52 (245)
-+|+|+||.+|.-++.+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CEEEEccCCccHHHHHHhhc
Confidence 38999999999999887654
No 196
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.29 E-value=55 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCChhhhccCcc
Q 036170 197 FDVFGSCLMDMAKMGITSNEKIDSFNI 223 (245)
Q Consensus 197 ~~~l~~~l~~mv~eG~i~~e~~d~fn~ 223 (245)
-+.+...|.+|.+.++++++|.+.+.-
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~ 41 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKE 41 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 346788999999999999999986643
No 197
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=24.27 E-value=1.1e+02 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNII 54 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii 54 (245)
..++++-..++.. . .+...+|.||||.+|.-|-.+++.+.
T Consensus 60 ~~iL~~~~~~Ia~--~----i~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 60 IEILKKHSSDIAA--S----IPSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred HHHHHHHHHHHHH--h----cCCCCEEEEECCCchHHHHHHHHHHH
Confidence 3455555555432 1 23456899999999998888776654
No 198
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=24.08 E-value=1.8e+02 Score=27.52 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=35.7
Q ss_pred CCCeEEEEeecCCCCcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCc
Q 036170 29 TSSTFRVADLGCSTGPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENN 85 (245)
Q Consensus 29 ~~~~~~IaD~GCS~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~ND 85 (245)
..+.+-|.|||...| ..+-.+|+++.++. + .+|.+.+.--+.|...
T Consensus 108 g~~~vHIID~~i~~G----~QW~~LiqaLa~R~---~----gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 108 GERRVHIIDFGIGFG----VQWPSLIQALASRP---G----GPPSLRITGIGPPNSG 153 (374)
T ss_pred cCcceEEEeccCCcc----hHHHHHHHHHhcCC---C----CCCeEEEEeccCCCCC
Confidence 356899999999988 47888888888653 1 3678888888887654
No 199
>PRK11523 DNA-binding transcriptional repressor ExuR; Provisional
Probab=23.94 E-value=73 Score=27.85 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHhhccCCcc-ccc----ccchHHHHHHHHHHHHHhcCCCChhhhccCcc
Q 036170 177 ARAQELVAGGLM-SQT----TFGIFFDVFGSCLMDMAKMGITSNEKIDSFNI 223 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~----~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~ 223 (245)
....+|+||-+| ++. ..|.--..+..||+.|..+|+|+...-..+.+
T Consensus 21 I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~L~~eGlV~~~~~~G~~V 72 (253)
T PRK11523 21 IEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72 (253)
T ss_pred HHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCeeEE
Confidence 457799999999 332 23333557899999999999997665443333
No 200
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=23.88 E-value=1.3e+02 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=15.2
Q ss_pred CeEEEEeecCCCCcCcHHHH
Q 036170 31 STFRVADLGCSTGPNTFIAM 50 (245)
Q Consensus 31 ~~~~IaD~GCS~G~Ns~~~~ 50 (245)
++-+|.|+||.+|..+..++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll 91 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVL 91 (270)
T ss_pred CCCEEEEEcCCchHHHHHHH
Confidence 34599999999998665543
No 201
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.57 E-value=85 Score=20.73 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCChh--hhccCccCcccCCHHHHHHHHhhCC
Q 036170 203 CLMDMAKMGITSNE--KIDSFNIPNHHPTPKELESIIKTNK 241 (245)
Q Consensus 203 ~l~~mv~eG~i~~e--~~d~fn~P~y~ps~eEv~~~ie~~G 241 (245)
+|...+++|+|++- .++.+.---++-|.+.++.+++..|
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~g 48 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRRAG 48 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHcC
Confidence 34455556666522 2344444446677888888887765
No 202
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=23.17 E-value=37 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.8
Q ss_pred EEEeecCCCCcCcHHHH
Q 036170 34 RVADLGCSTGPNTFIAM 50 (245)
Q Consensus 34 ~IaD~GCS~G~Ns~~~~ 50 (245)
+|.|+||.||.-++.+.
T Consensus 113 ~ilDlGTGSG~iai~la 129 (280)
T COG2890 113 RILDLGTGSGAIAIALA 129 (280)
T ss_pred cEEEecCChHHHHHHHH
Confidence 99999999998887663
No 203
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=23.00 E-value=1.1e+02 Score=27.14 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=40.9
Q ss_pred hhccCCcccccccchHHHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHhhCCce
Q 036170 181 ELVAGGLMSQTTFGIFFDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIKTNKYF 243 (245)
Q Consensus 181 EL~~GG~l~~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie~~G~f 243 (245)
|+.-|-.|.+.. -|+....|+..|..+|+.+.+++.+. +.+|+.+.|..+|-|
T Consensus 32 EiiigAILtQNT---~WknvekAlenLk~~~~~~l~~I~~~-------~~~~L~elIrpsGFY 84 (215)
T COG2231 32 EIIIGAILTQNT---SWKNVEKALENLKNEGILNLKKILKL-------DEEELAELIRPSGFY 84 (215)
T ss_pred hHHHHHHHhccc---cHHHHHHHHHHHHHcccCCHHHHhcC-------CHHHHHHHHhccchH
Confidence 666666664321 28999999999999999998876654 578899999888865
No 204
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.91 E-value=1.3e+02 Score=20.47 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccCC
Q 036170 160 AEAYSTQFKKDIESFLNARAQELVAGG 186 (245)
Q Consensus 160 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG 186 (245)
.|.|-+.|++|-...|++|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 488999999999999999999887655
No 205
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.91 E-value=42 Score=30.58 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhccCCcc
Q 036170 170 DIESFLNARAQELVAGGLM 188 (245)
Q Consensus 170 D~~~FL~~Ra~EL~~GG~l 188 (245)
++..++-.-+.-|+|||.+
T Consensus 203 ~Le~~~~~aa~~L~~gGlf 221 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLF 221 (287)
T ss_pred chhhHHHHHHHhcCCCceE
Confidence 6777888888889999988
No 206
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=22.89 E-value=79 Score=22.16 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcCCCChhhhccC
Q 036170 196 FFDVFGSCLMDMAKMGITSNEKIDSF 221 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~~d~f 221 (245)
+++.=...++..|..|.|++|.-+.+
T Consensus 16 m~e~kK~~idk~Ve~G~iTqeqAd~i 41 (59)
T PF10925_consen 16 MLELKKQIIDKYVEAGVITQEQADAI 41 (59)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 46666788899999999999987644
No 207
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=22.88 E-value=1.7e+02 Score=26.01 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccCCccc--------------------c----------cccchH---HHHHHHHHHH
Q 036170 160 AEAYSTQFKKDIESFLNARAQELVAGGLMS--------------------Q----------TTFGIF---FDVFGSCLMD 206 (245)
Q Consensus 160 ~~ay~~Q~~~D~~~FL~~Ra~EL~~GG~l~--------------------~----------~~~~~~---~~~l~~~l~~ 206 (245)
...|-++.-+++..| ..|=++++-+|.+. + .+...| +..+..-+..
T Consensus 90 hs~YVd~l~~~~~~f-~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~ 168 (234)
T PF10474_consen 90 HSSYVDQLVQEFQQF-SERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEK 168 (234)
T ss_pred cCHHHHHHHHHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHH
Confidence 456888999999997 77777888777660 0 111112 3456666777
Q ss_pred HHhcCCCChh-hhccCccCcccCCHHHHHHHHhhCCcee
Q 036170 207 MAKMGITSNE-KIDSFNIPNHHPTPKELESIIKTNKYFT 244 (245)
Q Consensus 207 mv~eG~i~~e-~~d~fn~P~y~ps~eEv~~~ie~~G~f~ 244 (245)
|..-..++.- -+++|---+|.| .+|+..++++..-|+
T Consensus 169 l~~~~~~p~~~~Ve~YIKAyYl~-e~e~~~W~~~h~eYs 206 (234)
T PF10474_consen 169 LSGIRPIPNREYVENYIKAYYLP-EEELEEWIRTHTEYS 206 (234)
T ss_pred HcCCCCCccHHHHHHHHHHHcCC-HHHHHHHHHhCcccC
Confidence 7666556653 345555555555 789999999875554
No 208
>KOG1475 consensus Ribosomal protein RPL1/RPL2/RL4L4 [RNA processing and modification]
Probab=22.61 E-value=66 Score=30.12 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=34.5
Q ss_pred HHHHhhccCCcccc--cccchHHHHHHHHHHHHHhcCCCChhhh-ccCccCcccCCHHHHHHHHh
Q 036170 177 ARAQELVAGGLMSQ--TTFGIFFDVFGSCLMDMAKMGITSNEKI-DSFNIPNHHPTPKELESIIK 238 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~--~~~~~~~~~l~~~l~~mv~eG~i~~e~~-d~fn~P~y~ps~eEv~~~ie 238 (245)
+---+|.|||+++. -.+...|+.|..++-.-.. ..++ ..|++|...-+-.++..+|.
T Consensus 234 LnlLkLAPGghlGRfvIWTeSAF~kLd~i~Gs~~~-----~a~lk~gy~lP~~i~~n~Dl~rii~ 293 (363)
T KOG1475|consen 234 LNLLKLAPGGHLGRFVIWTESAFEKLDSIYGSTEK-----AAELKKGYKLPNHIMSNADLSRIIN 293 (363)
T ss_pred hhhhhcCCCcccceeEEeehHHhhhHHhhcccchh-----hhhcccCccCccchhhhhHHHHHHH
Confidence 33457899999943 2445567777777665332 2223 36888877766555555543
No 209
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=1.4e+02 Score=26.29 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCcCcHHHHHHHH
Q 036170 9 KELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGPNTFIAMQNII 54 (245)
Q Consensus 9 ~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~Ns~~~~~~ii 54 (245)
...||++.+++- ...+-..+++||+||--|-.+.+.+.
T Consensus 29 lDaLekd~~eL~--------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 29 LDALEKDAAELK--------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHh--------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 345666665532 12356789999999988877776665
No 210
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.42 E-value=1.1e+02 Score=21.62 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCChhhhccCccCcc
Q 036170 199 VFGSCLMDMAKMGITSNEKIDSFNIPNH 226 (245)
Q Consensus 199 ~l~~~l~~mv~eG~i~~e~~d~fn~P~y 226 (245)
.....+..|.++|+++.++.+...-+..
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~~~~ 41 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRSEST 41 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 4567899999999999999987665533
No 211
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=22.29 E-value=1e+02 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCeEEEEeecCCCCc
Q 036170 4 VLERAKELINEAIADKLDLKLLKIDTSSTFRVADLGCSTGP 44 (245)
Q Consensus 4 ~~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~IaD~GCS~G~ 44 (245)
+..++-.|+.+.|. .+.+. ...=+|.||||.-|.
T Consensus 47 ae~riv~wl~d~~~-~~rv~------~~A~~VlDLGtGNG~ 80 (227)
T KOG1271|consen 47 AEERIVDWLKDLIV-ISRVS------KQADRVLDLGTGNGH 80 (227)
T ss_pred HHHHHHHHHHhhhh-hhhhc------ccccceeeccCCchH
Confidence 34556667777775 34322 112299999998774
No 212
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.21 E-value=50 Score=26.16 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhcCCCChhhhccC
Q 036170 195 IFFDVFGSCLMDMAKMGITSNEKIDSF 221 (245)
Q Consensus 195 ~~~~~l~~~l~~mv~eG~i~~e~~d~f 221 (245)
...+.++...++||.+|-++.++-..|
T Consensus 21 ~~~ek~~klvDelVkkGeln~eEak~~ 47 (108)
T COG3937 21 ETAEKVQKLVDELVKKGELNAEEAKRF 47 (108)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345677778888888888887775444
No 213
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=22.11 E-value=49 Score=29.58 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=31.2
Q ss_pred HhhccCCcc-cccccchHHHHHHHHHHHHHhcCCCChhhhc-cCccCcccCCHHHHHHHH
Q 036170 180 QELVAGGLM-SQTTFGIFFDVFGSCLMDMAKMGITSNEKID-SFNIPNHHPTPKELESII 237 (245)
Q Consensus 180 ~EL~~GG~l-~~~~~~~~~~~l~~~l~~mv~eG~i~~e~~d-~fn~P~y~ps~eEv~~~i 237 (245)
==|+.||.+ ..+....+++.+..++.+--..-.+++++++ .-.+-.-..+.||=+.+-
T Consensus 171 y~l~~gg~~ytitDv~elh~wm~~~~e~hplfe~lt~ee~~~d~~v~~~~~~teeg~kv~ 230 (249)
T KOG3115|consen 171 YVLREGGILYTITDVKELHEWMVKHLEEHPLFERLTEEEEENDPCVELLSNATEEGKKVA 230 (249)
T ss_pred hhhhcCceEEEEeeHHHHHHHHHHHHHhCcHhhhcchhhhcCCcchhhhhhhhhhccccc
Confidence 346789988 2344444566666666665445566666665 223333344444444433
No 214
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=22.06 E-value=43 Score=26.69 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.0
Q ss_pred CCeEEEEeecCCCCc
Q 036170 30 SSTFRVADLGCSTGP 44 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~ 44 (245)
.+....+|+||..|-
T Consensus 57 ~~~~~FVDlGCGNGL 71 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGL 71 (112)
T ss_pred CCCCceEEccCCchH
Confidence 356789999999874
No 215
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=21.91 E-value=60 Score=22.25 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhh
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEK 217 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~ 217 (245)
.+..++.||=+| ++.. .+.-...+..|+..|+++|+|....
T Consensus 13 I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 13 ILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp HHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred HHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEEC
Confidence 577889999888 4322 2223457889999999999987653
No 216
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=21.89 E-value=57 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=18.7
Q ss_pred cCCCCceeEEE-------ec-cccccccCCCccc
Q 036170 112 LFPNSTLHIVH-------SS-FALHWISKIPEEI 137 (245)
Q Consensus 112 LfP~~Svh~~~-------Ss-~alHWLS~~P~~~ 137 (245)
+.|.++|-+.. |. +.++|+.|.|.++
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~l 43 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAV 43 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCc
Confidence 35666666554 44 8999999999853
No 217
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=21.52 E-value=77 Score=28.15 Aligned_cols=90 Identities=19% Similarity=0.343 Sum_probs=54.3
Q ss_pred CCeEEEEeecCCCCcCcHHH-------------HHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCchHHHhhhCCCC
Q 036170 30 SSTFRVADLGCSTGPNTFIA-------------MQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNFNTLFKTLPHS 96 (245)
Q Consensus 30 ~~~~~IaD~GCS~G~Ns~~~-------------~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDFntLF~~L~~~ 96 (245)
.+.-+.+|.||.-|+-|-.+ +...++..++..... -+.-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~----------------------------~~~v 105 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD----------------------------NPRV 105 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG----------------------------GCCE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc----------------------------CCCc
Confidence 45789999999999988644 344444444332110 0011
Q ss_pred CceEEeecCcccccccCCC-CceeEEEeccccccccCCCccccCCCCcccCCCcccccCCcHHHHHHHHHHHHHhHHHHH
Q 036170 97 RKYFAAGVPGFFQDRLFPN-STLHIVHSSFALHWISKIPEEIAGGKSLAWNKESIQGKRFVKEVAEAYSTQFKKDIESFL 175 (245)
Q Consensus 97 ~~~f~~~vpgSFy~rLfP~-~Svh~~~Ss~alHWLS~~P~~~~d~~~~~~nkg~i~~~~~~~~v~~ay~~Q~~~D~~~FL 175 (245)
..+|..|.- ..-|. +.-|++|.=|++..|+. .||..||
T Consensus 106 ~~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL 144 (218)
T PF05891_consen 106 GEFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFL 144 (218)
T ss_dssp EEEEES-GG-----G----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHH
T ss_pred ceEEecCHh-----hccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHH
Confidence 356777743 34565 79999999888877633 5899999
Q ss_pred HHHHHhhccCCcc
Q 036170 176 NARAQELVAGGLM 188 (245)
Q Consensus 176 ~~Ra~EL~~GG~l 188 (245)
+.=.+-|+|||.+
T Consensus 145 ~RCk~~L~~~G~I 157 (218)
T PF05891_consen 145 KRCKQALKPNGVI 157 (218)
T ss_dssp HHHHHHEEEEEEE
T ss_pred HHHHHhCcCCcEE
Confidence 9999999999999
No 218
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.52 E-value=96 Score=21.17 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCChhhhc-cCccCcccCCHHHHHHHHh
Q 036170 199 VFGSCLMDMAKMGITSNEKID-SFNIPNHHPTPKELESIIK 238 (245)
Q Consensus 199 ~l~~~l~~mv~eG~i~~e~~d-~fn~P~y~ps~eEv~~~ie 238 (245)
.....|.+...+|.|+.+|++ ....=+-..+..|+..++.
T Consensus 10 ~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 10 RAVDLLRAAFAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 345778888899999999997 5555566677777777664
No 219
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=21.38 E-value=62 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHhcCCCC
Q 036170 193 FGIFFDVFGSCLMDMAKMGITS 214 (245)
Q Consensus 193 ~~~~~~~l~~~l~~mv~eG~i~ 214 (245)
.+.-...+...+++|+++|+|+
T Consensus 27 ~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 27 LGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HTS-HHHHHHHHHHHHHTTSEE
T ss_pred hCCCHHHHHHHHHHHHHCcCcC
Confidence 3444667889999999999873
No 220
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=21.33 E-value=94 Score=29.02 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=62.1
Q ss_pred ecCcccccccCCCCceeEEEeccccccccC-CCccccCCCCcccCCCcccccCC-cHHHHHHHHHHHHHhHHHHHHHHHH
Q 036170 103 GVPGFFQDRLFPNSTLHIVHSSFALHWISK-IPEEIAGGKSLAWNKESIQGKRF-VKEVAEAYSTQFKKDIESFLNARAQ 180 (245)
Q Consensus 103 ~vpgSFy~rLfP~~Svh~~~Ss~alHWLS~-~P~~~~d~~~~~~nkg~i~~~~~-~~~v~~ay~~Q~~~D~~~FL~~Ra~ 180 (245)
.....++.||+|+.. |+||++ -|+-+. ....+.+...-. .+. ..-|.+|=+. +-++
T Consensus 169 ~~~~~l~~~llp~~~---------l~wL~~~~p~v~~-~L~~~lsg~~~~-~~~l~~iV~~Ad~~-----------sv~~ 226 (327)
T PF07514_consen 169 QLGALLAPRLLPPEA---------LAWLSSGDPEVLS-ALLAALSGQYSE-AGPLGEIVRQADRA-----------SVAR 226 (327)
T ss_pred HHHHHHHHHhCCHHH---------HHHHccCChHHHH-HHHHHhCCCCCc-cchHHHHHHHHHHH-----------HHHH
Confidence 345667888988765 889999 776432 111111110000 000 1223333333 4555
Q ss_pred hhccCCcc--cccccchHHHHHHHHHHHHH-hcCCCChhhh-------ccCccCcccCCHHHHHHHHhhCCc
Q 036170 181 ELVAGGLM--SQTTFGIFFDVFGSCLMDMA-KMGITSNEKI-------DSFNIPNHHPTPKELESIIKTNKY 242 (245)
Q Consensus 181 EL~~GG~l--~~~~~~~~~~~l~~~l~~mv-~eG~i~~e~~-------d~fn~P~y~ps~eEv~~~ie~~G~ 242 (245)
+|+-|..- .......+-+.|-++|+.|+ ++|.+...+- +.-..=+.-+..|++++.+.+.|-
T Consensus 227 ~l~~~~~~~~~~~~~~~l~~~l~~alR~Ll~~~~~~~~N~~ga~~w~~~d~l~lv~~~~~d~ir~~l~~~g~ 298 (327)
T PF07514_consen 227 DLKAGDAARAPAAPGVPLERYLLDALRRLLAEEGKWKINRPGADGWVTGDGLYLVWKTAADDIRAHLLSQGI 298 (327)
T ss_pred HHhcCccccccCCCCCCHHHHHHHHHHHHHHhcCcccCCCCCCCeeecCCcEEEEeccHHHHHHHHHHHcCC
Confidence 66444443 11122345677789999999 7776554432 111112344577888888887774
No 221
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=21.14 E-value=97 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCChhhhccCcc
Q 036170 199 VFGSCLMDMAKMGITSNEKIDSFNI 223 (245)
Q Consensus 199 ~l~~~l~~mv~eG~i~~e~~d~fn~ 223 (245)
.+..++..|+++|++++++.+...-
T Consensus 17 ~~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 17 DLDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 3578899999999999999987665
No 222
>PF05234 UAF_Rrn10: UAF complex subunit Rrn10; InterPro: IPR022793 The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor [].
Probab=21.02 E-value=2e+02 Score=23.21 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhcC--CCChhhhc----cCccCcccCCHHHHHHHHhhC---Cce
Q 036170 195 IFFDVFGSCLMDMAKMG--ITSNEKID----SFNIPNHHPTPKELESIIKTN---KYF 243 (245)
Q Consensus 195 ~~~~~l~~~l~~mv~eG--~i~~e~~d----~fn~P~y~ps~eEv~~~ie~~---G~f 243 (245)
++|+.+++.+++ .| .++.+|+- ...+|+=+++.+|+....+.. |.|
T Consensus 4 nvyeacsdLI~~---~g~~~vsaDEvL~~k~~~~VpIP~k~ReEl~~~~~~d~~eg~~ 58 (120)
T PF05234_consen 4 NVYEACSDLIKE---FGTHVVSADEVLAEKIDHLVPIPFKTREELEEDAEPDRNEGLF 58 (120)
T ss_pred cHHHHHHHHHHh---cCCcccCHHHHHHHhcCCcccCCCccHHHHHhhhccchhcccc
Confidence 457777777776 65 48888873 677899999999997665443 555
No 223
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=20.99 E-value=1.2e+02 Score=28.86 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.8
Q ss_pred eEEEEeecCCCCcCcHHHHH
Q 036170 32 TFRVADLGCSTGPNTFIAMQ 51 (245)
Q Consensus 32 ~~~IaD~GCS~G~Ns~~~~~ 51 (245)
.-+|+|+||.+|.-++.+..
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 35899999999999988653
No 224
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=20.77 E-value=87 Score=22.96 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=12.3
Q ss_pred HHHHhhccCCcccc
Q 036170 177 ARAQELVAGGLMSQ 190 (245)
Q Consensus 177 ~Ra~EL~~GG~l~~ 190 (245)
+|-.||+.||++..
T Consensus 45 HR~AEL~~~~kLyD 58 (71)
T PRK10391 45 HRRAELVSGGRLFD 58 (71)
T ss_pred HHHHHHHhCccccc
Confidence 79999999999943
No 225
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=20.55 E-value=1e+02 Score=26.86 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHhhccCCcc-cccc----cchHHHHHHHHHHHHHhcCCCChhhhc
Q 036170 177 ARAQELVAGGLM-SQTT----FGIFFDVFGSCLMDMAKMGITSNEKID 219 (245)
Q Consensus 177 ~Ra~EL~~GG~l-~~~~----~~~~~~~l~~~l~~mv~eG~i~~e~~d 219 (245)
....+|+||-+| ++.. .|.--..+..||..|..+|+|+...-.
T Consensus 23 I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 70 (254)
T PRK09464 23 ILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70 (254)
T ss_pred HHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCc
Confidence 456899999999 4432 333345789999999999999866544
No 226
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed
Probab=20.50 E-value=3.1e+02 Score=24.98 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhhhccC-------ccCcccCCHHHHHHHHhhC
Q 036170 196 FFDVFGSCLMDMAKMGITSNEKIDSF-------NIPNHHPTPKELESIIKTN 240 (245)
Q Consensus 196 ~~~~l~~~l~~mv~eG~i~~e~~d~f-------n~P~y~ps~eEv~~~ie~~ 240 (245)
....+...++-++.+|++...-...+ ..|.+..|.+|++.+++..
T Consensus 98 ~l~~lr~~~~~~~~~~~i~~nP~~~i~~~k~~~~~~~~~lt~~Ev~~l~~~~ 149 (358)
T PRK01287 98 QLSPLRVWFRWLLKRHHILYNPAEDLELPKEEKRLPRQILSEAETEQVLASP 149 (358)
T ss_pred HHHHHHHHHHHHHHcCCcccChhhhccCCCcccccccccCCHHHHHHHHHhc
Confidence 46788999999999998864433222 2455677999999999753
No 227
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=20.47 E-value=98 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCChhhhccCccCcccCCHHHHHHHHh
Q 036170 197 FDVFGSCLMDMAKMGITSNEKIDSFNIPNHHPTPKELESIIK 238 (245)
Q Consensus 197 ~~~l~~~l~~mv~eG~i~~e~~d~fn~P~y~ps~eEv~~~ie 238 (245)
-+.+..+|..||+.|...-..-..-..=+|.+|++|--..|-
T Consensus 63 ~e~~~~Il~~Lv~~g~aew~~~~~~~~~I~Wrt~~eWa~~I~ 104 (139)
T PF05871_consen 63 PEFIREILDELVQKGNAEWIDKSKTRCLIYWRTPEEWADLIY 104 (139)
T ss_dssp HHHHHHHHHHHHCTTSEEECSTTSCEEEE-SS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCEEEEEeCCHHHHHHHHH
Confidence 678899999999999766553334567889999999776653
No 228
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=20.32 E-value=68 Score=30.89 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=35.8
Q ss_pred cCCCCcCcH-HHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCC-----------CCCCchHHHhhhC
Q 036170 39 GCSTGPNTF-IAMQNIIEAIELKLFQASHKNPATVEFQVFFND-----------HPENNFNTLFKTL 93 (245)
Q Consensus 39 GCS~G~Ns~-~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nD-----------lP~NDFntLF~~L 93 (245)
||+.|+-.+ +.+.++|..|+.+.+. -|.++|.++| ||.|-+.-+|...
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~-------~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~ 60 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQT-------FPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGP 60 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhcccc-------CCceEEEECCCCCCcCCEEEEcCCCCeEEEECCC
Confidence 899999999 7899999999986532 3557777765 6777776666643
No 229
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.14 E-value=2.9e+02 Score=18.65 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=26.9
Q ss_pred CcCcHHHHHHHHHHHHHHHhhcCCCCCCCeeEEEEeCCCCCCch
Q 036170 43 GPNTFIAMQNIIEAIELKLFQASHKNPATVEFQVFFNDHPENNF 86 (245)
Q Consensus 43 G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~p~~~v~~nDlP~NDF 86 (245)
|. |-..-..+++.|.+...+..+ .+...+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~--~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAK--APKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhC--cCcceEEEEEEEeChhhe
Confidence 55 666666777766665544332 235579999999887654
Done!