Your job contains 1 sequence.
>036173
MRGVRKQGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIK
AMEEFYREIYAVNGITDLQFPQHYPVSRLLGCVEVVGCVRCEELASWEVVPEGVRLEAQT
DFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFS
LKPGSMSTNFPENKSTAVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQDEKPYALRS
GSKKKSSDGDAFNQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAPSRIFAAAVKG
LKPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036173
(304 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2038947 - symbol:AT2G20410 "AT2G20410" species... 759 1.7e-80 2
MGI|MGI:1928469 - symbol:Trip4 "thyroid hormone receptor ... 265 4.1e-22 1
UNIPROTKB|Q15650 - symbol:TRIP4 "Activating signal cointe... 261 1.1e-21 1
UNIPROTKB|F6UYL9 - symbol:TRIP4 "Uncharacterized protein"... 257 3.0e-21 1
UNIPROTKB|E2QU39 - symbol:TRIP4 "Uncharacterized protein"... 257 3.0e-21 1
UNIPROTKB|F1S0A8 - symbol:TRIP4 "Uncharacterized protein"... 254 5.5e-21 1
ZFIN|ZDB-GENE-040724-92 - symbol:trip4 "thyroid hormone r... 252 9.7e-21 1
UNIPROTKB|E1C1A8 - symbol:TRIP4 "Uncharacterized protein"... 252 1.0e-20 1
FB|FBgn0031115 - symbol:CG11710 species:7227 "Drosophila ... 249 1.6e-20 1
UNIPROTKB|F1N1K2 - symbol:TRIP4 "Uncharacterized protein"... 246 4.6e-20 1
RGD|1306838 - symbol:Trip4 "thyroid hormone receptor inte... 196 1.0e-14 1
>TAIR|locus:2038947 [details] [associations]
symbol:AT2G20410 "AT2G20410" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002685 EMBL:AC006569 InterPro:IPR015947 SUPFAM:SSF88697
InterPro:IPR007374 Pfam:PF04266 SMART:SM01022 IPI:IPI00533429
PIR:H84588 RefSeq:NP_565471.1 UniGene:At.13969
ProteinModelPortal:Q9SK61 PRIDE:Q9SK61 EnsemblPlants:AT2G20410.1
GeneID:816560 KEGG:ath:AT2G20410 TAIR:At2g20410 InParanoid:Q9SK61
OMA:ASKVPDE PhylomeDB:Q9SK61 ProtClustDB:CLSN2914958
ArrayExpress:Q9SK61 Genevestigator:Q9SK61 Uniprot:Q9SK61
Length = 339
Score = 759 (272.2 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 140/236 (59%), Positives = 170/236 (72%)
Query: 7 QGNYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFY 66
+GNY NPCLTMHQPWASLLV+GIKR+EGRSWP+P+RGRLWIHAASK+P+EATIKAMEEFY
Sbjct: 3 RGNYKNPCLTMHQPWASLLVHGIKRIEGRSWPSPIRGRLWIHAASKVPDEATIKAMEEFY 62
Query: 67 REIYAVNGITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLC 126
++IYAV+GITD+QFPQHYPVS +W+ +P+GVRLE QT+FCWLC
Sbjct: 63 QQIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSDELQNWDALPQGVRLEGQTNFCWLC 122
Query: 127 ENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPGSM 186
E PQKL++PFEMRGYQGVYNLE K+Y AA RGL P + VKFPLPD +DPFSLKPGS+
Sbjct: 123 EKPQKLIIPFEMRGYQGVYNLENKIYVAAARGLMPSQNSFKVKFPLPDPKDPFSLKPGSI 182
Query: 187 STNFPENK----------STAVEKSSTLNXXXXXXXXXXTQFNKKNQDLLTNVMQD 232
E K + A+++ ++L TQF+KK Q L TN + D
Sbjct: 183 PCTMQEKKELDSKQVTSLTAAIKQVTSLTAAIAGAKAAATQFSKKGQSLQTNNIFD 238
Score = 68 (29.0 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 253 NQGTSALAENGERNLIEHEESSSHDQPRGQLKQDPGAPSRIFAAAVKGLKP 303
+ +S+ E+ +R+ + +S + G+ + DPG+ +RI AAA++ LKP
Sbjct: 290 SSNSSSKVESSQRSAVT--KSEDRNTRIGERRFDPGS-ARIMAAAIRNLKP 337
>MGI|MGI:1928469 [details] [associations]
symbol:Trip4 "thyroid hormone receptor interactor 4"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR009349 Pfam:PF06221 MGI:MGI:1928469 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0005815 InterPro:IPR015947 SUPFAM:SSF88697
InterPro:IPR007374 Pfam:PF04266 SMART:SM01022 EMBL:AC151906
CTD:9325 eggNOG:NOG248556 HOGENOM:HOG000006873 HOVERGEN:HBG061618
OMA:GQDKLAV OrthoDB:EOG4F4S9V EMBL:AF197574 EMBL:AF539614
EMBL:AK039024 EMBL:BC021316 IPI:IPI00135240 IPI:IPI01007801
RefSeq:NP_001164378.1 RefSeq:NP_062771.2 UniGene:Mm.208379
ProteinModelPortal:Q9QXN3 SMR:Q9QXN3 PhosphoSite:Q9QXN3
PRIDE:Q9QXN3 Ensembl:ENSMUST00000117083 Ensembl:ENSMUST00000119245
Ensembl:ENSMUST00000122410 Ensembl:ENSMUST00000179395 GeneID:56404
KEGG:mmu:56404 UCSC:uc009qdz.2 UCSC:uc012gvn.1
GeneTree:ENSGT00390000005300 InParanoid:Q9QXN3 ChiTaRS:TRIP4
NextBio:312526 Bgee:Q9QXN3 CleanEx:MM_TRIP4 Genevestigator:Q9QXN3
GermOnline:ENSMUSG00000032386 Uniprot:Q9QXN3
Length = 581
Score = 265 (98.3 bits), Expect = 4.1e-22, P = 4.1e-22
Identities = 56/146 (38%), Positives = 82/146 (56%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGRSW P RGRLWI A K P + ++ YR +
Sbjct: 436 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATGKRPSPQEVSELQATYR---LLR 492
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP YP E P+ + E+ + F ++C+NPQ+++
Sbjct: 493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFQ--EQFPD-ISQESDSSFVFICKNPQEMV 548
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574
>UNIPROTKB|Q15650 [details] [associations]
symbol:TRIP4 "Activating signal cointegrator 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005815 "microtubule organizing center"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009349
Pfam:PF06221 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0005815 GO:GO:0003713
GO:GO:0006366 EMBL:CH471082 InterPro:IPR015947 SUPFAM:SSF88697
GO:GO:0016922 InterPro:IPR007374 Pfam:PF04266 SMART:SM01022
EMBL:AF168418 EMBL:AK314319 EMBL:BC012448 EMBL:L40371
IPI:IPI00018840 RefSeq:NP_057297.2 UniGene:Hs.500340 PDB:2E5O
PDBsum:2E5O ProteinModelPortal:Q15650 SMR:Q15650 IntAct:Q15650
STRING:Q15650 PhosphoSite:Q15650 DMDM:116242828 PaxDb:Q15650
PeptideAtlas:Q15650 PRIDE:Q15650 DNASU:9325 Ensembl:ENST00000261884
GeneID:9325 KEGG:hsa:9325 UCSC:uc002anm.3 CTD:9325
GeneCards:GC15P064683 HGNC:HGNC:12310 HPA:HPA016605 MIM:604501
neXtProt:NX_Q15650 PharmGKB:PA36988 eggNOG:NOG248556
HOGENOM:HOG000006873 HOVERGEN:HBG061618 InParanoid:Q15650
OMA:GQDKLAV OrthoDB:EOG4F4S9V PhylomeDB:Q15650
EvolutionaryTrace:Q15650 GenomeRNAi:9325 NextBio:34931 Bgee:Q15650
CleanEx:HS_TRIP4 Genevestigator:Q15650 GermOnline:ENSG00000103671
Uniprot:Q15650
Length = 581
Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 55/146 (37%), Positives = 83/146 (56%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL++HQPWASLLV GIKRVEGRSW P RGRLWI A +K P + ++ YR +
Sbjct: 436 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYR---LLR 492
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP YP E P+ + E+ + F ++C+NPQ+++
Sbjct: 493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMV 548
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574
>UNIPROTKB|F6UYL9 [details] [associations]
symbol:TRIP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009349 Pfam:PF06221 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374
Pfam:PF04266 SMART:SM01022 CTD:9325 OMA:GQDKLAV
GeneTree:ENSGT00390000005300 Ensembl:ENSCAFT00000027071
EMBL:AAEX03016207 EMBL:AAEX03016206 RefSeq:XP_535513.2
GeneID:478340 KEGG:cfa:478340 Uniprot:F6UYL9
Length = 581
Score = 257 (95.5 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 54/146 (36%), Positives = 82/146 (56%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGR+W P RGRLWI A +K P + ++ YR +
Sbjct: 436 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYR---VLR 492
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP YP + P+ + E+ + F ++C NPQ+++
Sbjct: 493 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 548
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 549 VKFPIKGNPKIWKLDSKIHQGAKKGL 574
>UNIPROTKB|E2QU39 [details] [associations]
symbol:TRIP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009349 Pfam:PF06221 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374
Pfam:PF04266 SMART:SM01022 Ensembl:ENSCAFT00000027071
Uniprot:E2QU39
Length = 584
Score = 257 (95.5 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 54/146 (36%), Positives = 82/146 (56%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGR+W P RGRLWI A +K P + ++ YR +
Sbjct: 439 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYR---VLR 495
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP YP + P+ + E+ + F ++C NPQ+++
Sbjct: 496 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 551
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 552 VKFPIKGNPKIWKLDSKIHQGAKKGL 577
>UNIPROTKB|F1S0A8 [details] [associations]
symbol:TRIP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009349 Pfam:PF06221
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0008270
InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374 Pfam:PF04266
SMART:SM01022 OMA:GQDKLAV GeneTree:ENSGT00390000005300
EMBL:CU499013 EMBL:CU571342 Ensembl:ENSSSCT00000005028
Uniprot:F1S0A8
Length = 550
Score = 254 (94.5 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 54/146 (36%), Positives = 81/146 (55%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGRSW P RGRLWI A +K P + ++ Y +
Sbjct: 405 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSELQTTY---LVLR 461
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP YP + P+ + E+ + F ++C NPQ+++
Sbjct: 462 G-KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--DQYPD-MSQESDSPFVFICTNPQEMI 517
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 518 VKFPIKGNPKIWKLDSKIHQGAKKGL 543
>ZFIN|ZDB-GENE-040724-92 [details] [associations]
symbol:trip4 "thyroid hormone receptor interactor 4"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009349 Pfam:PF06221 ZFIN:ZDB-GENE-040724-92
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 InterPro:IPR015947
SUPFAM:SSF88697 InterPro:IPR007374 Pfam:PF04266 SMART:SM01022
eggNOG:NOG248556 HOGENOM:HOG000006873 HOVERGEN:HBG061618
OrthoDB:EOG4F4S9V EMBL:BC124323 IPI:IPI00498986 UniGene:Dr.87177
ProteinModelPortal:Q08CA0 SMR:Q08CA0 InParanoid:Q08CA0
Uniprot:Q08CA0
Length = 564
Score = 252 (93.8 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 57/146 (39%), Positives = 79/146 (54%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGR+W RGRLWI AA+ P I +E YR +Y
Sbjct: 422 CLSMHQPWASLLVKGIKRVEGRTWYTSHRGRLWIAAAANRPTPQEIAEVEAMYRHLYK-- 479
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
+ QFP YP E P+ + E+ + F ++C NPQ+L+
Sbjct: 480 --HEPQFPAEYPTGCLLGCVNVSDCLSQEQFR--EQYPQ-ISEESTSPFVFICSNPQELV 534
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F M+G ++ LE + +++A + L
Sbjct: 535 VKFPMKGKHKIWKLESQSHQSAKKCL 560
>UNIPROTKB|E1C1A8 [details] [associations]
symbol:TRIP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=IEA] InterPro:IPR009349 Pfam:PF06221
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0008270
InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374 Pfam:PF04266
SMART:SM01022 OMA:GQDKLAV GeneTree:ENSGT00390000005300
EMBL:AADN02051076 EMBL:AADN02051077 EMBL:AADN02051078
IPI:IPI00594812 Ensembl:ENSGALT00000003646 Uniprot:E1C1A8
Length = 581
Score = 252 (93.8 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 55/150 (36%), Positives = 81/150 (54%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLL+ GIKRVEGR+W RGRLWI A +K P I +E YR +
Sbjct: 436 CLSMHQPWASLLIRGIKRVEGRTWYTSHRGRLWIAATAKRPSPQEISELETTYRMLLR-- 493
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
D++FP YP E P+ + E+ + F ++C NPQ+++
Sbjct: 494 --KDVEFPNEYPSGCLLGCVDVTDCLSQEQFN--EQYPD-LSQESGSPFVFICTNPQEMV 548
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGLTPVK 163
V F ++G ++ L+ K+++ A +GL K
Sbjct: 549 VKFPIKGKPKIWKLDSKIHQGAKKGLMKQK 578
>FB|FBgn0031115 [details] [associations]
symbol:CG11710 species:7227 "Drosophila melanogaster"
[GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR009349
Pfam:PF06221 GO:GO:0005634 GO:GO:0006355 EMBL:AE014298
GO:GO:0008270 InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374
Pfam:PF04266 SMART:SM01022 OMA:GQDKLAV GeneTree:ENSGT00390000005300
UniGene:Dm.5640 GeneID:33044 KEGG:dme:Dmel_CG11710
FlyBase:FBgn0031115 ChiTaRS:CG11710 GenomeRNAi:33044 NextBio:781664
RefSeq:NP_608393.1 ProteinModelPortal:Q9VRA1 SMR:Q9VRA1
PRIDE:Q9VRA1 EnsemblMetazoa:FBtr0089642 UCSC:CG11710-RB
InParanoid:Q9VRA1 PhylomeDB:Q9VRA1 ArrayExpress:Q9VRA1 Bgee:Q9VRA1
Uniprot:Q9VRA1
Length = 513
Score = 249 (92.7 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 56/146 (38%), Positives = 78/146 (53%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIK+ EGR W + RGRLWI + SK P I ME FY+ +Y
Sbjct: 368 CLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLWIASTSKEPHAEDIAQMEGFYKVLY--- 424
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G D++FP HYP S E+ P G E+++ + ++C P++L
Sbjct: 425 GDPDIKFPSHYPTSSLLGCVHVDSCLPQEEYR--ELYPNG---ESESPYVFVCTKPEQLN 479
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
+ + G +Y L K + AA + L
Sbjct: 480 ILLPVHGDHKIYELPLKTHTAACKTL 505
>UNIPROTKB|F1N1K2 [details] [associations]
symbol:TRIP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016922 "ligand-dependent nuclear receptor binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009349 Pfam:PF06221
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0008270
InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374 Pfam:PF04266
SMART:SM01022 OMA:GQDKLAV GeneTree:ENSGT00390000005300
EMBL:DAAA02028734 IPI:IPI00708341 UniGene:Bt.58152
Ensembl:ENSBTAT00000019269 Uniprot:F1N1K2
Length = 579
Score = 246 (91.7 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 52/146 (35%), Positives = 80/146 (54%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL+MHQPWASLLV GIKRVEGR+W P RGRLWI A +K P + ++ Y +
Sbjct: 433 CLSMHQPWASLLVRGIKRVEGRNWYTPHRGRLWIAATAKRPSPQEVSELQTTYLLLRG-K 491
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
G+ +FP YP + P+ + E+ + F ++C NPQ+++
Sbjct: 492 GV---EFPSDYPSGCLLGCVDLIDCLSQKQFK--DQYPDISQEESDSPFVFICTNPQEMI 546
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 547 VKFPIKGNPKIWKLDSKIHQGAKKGL 572
>RGD|1306838 [details] [associations]
symbol:Trip4 "thyroid hormone receptor interactor 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR009349
Pfam:PF06221 RGD:1306838 GO:GO:0005634 GO:GO:0006355 GO:GO:0008270
InterPro:IPR015947 SUPFAM:SSF88697 InterPro:IPR007374 Pfam:PF04266
SMART:SM01022 IPI:IPI00948737 Ensembl:ENSRNOT00000065017
UCSC:RGD:1306838 ArrayExpress:D3ZEX0 Uniprot:D3ZEX0
Length = 539
Score = 196 (74.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL++HQPWASLLV GIKRVEGRSW P RGRLWI A K P + ++ YR +
Sbjct: 436 CLSVHQPWASLLVKGIKRVEGRSWYTPHRGRLWIAATGKRPSTQEVSELQATYR---LLR 492
Query: 74 GITDLQFPQHYP 85
G D++FP YP
Sbjct: 493 G-KDVEFPNDYP 503
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 304 266 0.00094 114 3 11 23 0.39 34
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 614 (65 KB)
Total size of DFA: 209 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.11u 0.17s 20.28t Elapsed: 00:00:01
Total cpu time: 20.11u 0.17s 20.28t Elapsed: 00:00:01
Start: Sat May 11 03:30:34 2013 End: Sat May 11 03:30:35 2013