BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036173
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E5O|A Chain A, 'solution Structure Of The Trip_4c Domain Of Target Of
Activating Signal Cointegrator 1
Length = 154
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 7/146 (4%)
Query: 14 CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVN 73
CL++HQPWASLLV GIKRVEGRSW P RGRLWI A +K P + ++ YR +
Sbjct: 9 CLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRG-- 66
Query: 74 GITDLQFPQHYPVSXXXXXXXXXXXXXXXXXASWEVVPEGVRLEAQTDFCWLCENPQKLL 133
D++FP YP E P+ + E+ + F ++C+NPQ+++
Sbjct: 67 --KDVEFPNDYPSGCLLGCVDLIDCLSQKQFK--EQFPD-ISQESDSPFVFICKNPQEMV 121
Query: 134 VPFEMRGYQGVYNLEKKVYEAAVRGL 159
V F ++G ++ L+ K+++ A +GL
Sbjct: 122 VKFPIKGNPKIWKLDSKIHQGAKKGL 147
>pdb|3LV1|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
pdb|3LV1|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+
Length = 457
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 127 ENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFP---LPDAQ 176
EN L +PF+ + G N+ K V +AA + LTPV L K P LPDA
Sbjct: 198 ENSHLLSLPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDAD 250
>pdb|3LNS|A Chain A, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|B Chain B, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|C Chain C, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
pdb|3LNS|D Chain D, Benzaldehyde Dehydrogenase, A Class 3 Aldehyde
Dehydrogenase, With Bound Nadp+ And Benzoate Adduct
Length = 457
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 127 ENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFP---LPDAQ 176
EN L +PF+ + G N+ K V +AA + LTPV L K P LPDA
Sbjct: 198 ENSHLLSLPFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDAD 250
>pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
pdb|3P8B|D Chain D, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
Length = 152
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 132 LLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPG 184
+L P ++GY V K V + A+RG+ +G LP + P + + KP
Sbjct: 36 ILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPA 88
>pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP
CLAMP DOMAIN
Length = 163
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 132 LLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFSLKPG 184
+L P ++GY V K V + A+RG+ +G LP + P + + KP
Sbjct: 36 ILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPA 88
>pdb|3ML4|A Chain A, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
Musk Juxtamembrane Region
pdb|3ML4|B Chain B, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
Musk Juxtamembrane Region
pdb|3ML4|C Chain C, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
Musk Juxtamembrane Region
pdb|3ML4|D Chain D, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
Musk Juxtamembrane Region
Length = 224
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 151 VYEAAVRGLTPVKGPLPVKFPLPD 174
+++ VRG++P KGP ++ LPD
Sbjct: 199 LFDCIVRGISPTKGPFGLRPVLPD 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,197,728
Number of Sequences: 62578
Number of extensions: 289133
Number of successful extensions: 563
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 8
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)