Query 036173
Match_columns 304
No_of_seqs 137 out of 307
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 10:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06554 ASCH_ASC-1_like ASC-1 100.0 2.9E-33 6.4E-38 232.6 10.6 113 12-132 1-113 (113)
2 KOG2845 Activating signal coin 99.1 1.2E-11 2.6E-16 124.2 -0.7 112 10-132 393-504 (505)
3 PF04266 ASCH: ASCH domain; I 98.6 1.5E-07 3.3E-12 74.7 7.0 55 15-101 1-58 (105)
4 KOG2845 Activating signal coin 97.9 1.3E-06 2.8E-11 88.4 -1.0 177 6-235 132-322 (505)
5 PRK12279 50S ribosomal protein 96.9 0.0021 4.6E-08 62.5 7.0 98 7-137 185-294 (311)
6 COG4933 Uncharacterized conser 95.0 0.07 1.5E-06 45.9 6.3 90 15-137 1-104 (124)
7 cd06541 ASCH ASC-1 homology or 84.9 1 2.2E-05 36.7 3.3 34 15-48 2-39 (105)
8 cd06552 ASCH_yqfb_like ASC-1 h 83.0 4.2 9.2E-05 32.1 6.0 33 15-47 2-36 (100)
9 COG2411 Uncharacterized conser 60.8 24 0.00051 32.6 5.9 40 11-50 5-46 (188)
10 PRK04980 hypothetical protein; 53.2 50 0.0011 27.7 6.2 54 13-100 3-59 (102)
11 cd06555 ASCH_PF0470_like ASC-1 36.1 22 0.00047 30.0 1.5 24 17-40 5-28 (109)
12 PF08758 Cadherin_pro: Cadheri 28.3 28 0.00061 28.1 0.9 26 78-103 13-38 (90)
13 KOG4552 Vitamin-D-receptor int 27.3 54 0.0012 31.3 2.7 32 149-180 129-160 (272)
14 PHA02447 hypothetical protein 22.9 83 0.0018 25.0 2.6 48 172-219 26-80 (86)
No 1
>cd06554 ASCH_ASC-1_like ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=100.00 E-value=2.9e-33 Score=232.63 Aligned_cols=113 Identities=48% Similarity=0.951 Sum_probs=92.6
Q ss_pred cceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173 12 NPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG 91 (304)
Q Consensus 12 mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG 91 (304)
|||||||||||+||++|.|+||||+|+|+|||+|+|||++|......+.++++||+.+ +....+||+.+|+|+|+|
T Consensus 1 ~~~lsi~qPwa~li~~g~K~~E~R~w~t~~rG~~~i~a~~k~~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~g~i~G 76 (113)
T cd06554 1 MKALSIHQPWASLIVRGIKRIEGRSWATNYRGRLWIHASAKLPTKLDIEEVEEFYRIL----YKLDIELPTGYPTGCLLG 76 (113)
T ss_pred CceeEEeCcHHHHHHcCCCceecccCCCCccccEEEEEcCCCCCHHHHHHHHHHhhhc----ccccccCCCCCceEEEEE
Confidence 7999999999999999999999999999999999999998777777788888887643 233467899999999999
Q ss_pred EEEEeceeeccccccccccccccccccCcceEEeccCCeec
Q 036173 92 CVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL 132 (304)
Q Consensus 92 vVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L 132 (304)
+|+++||+..+++.. ..+.+.. .++.|+|+|+||++|
T Consensus 77 ~v~vvdc~~~e~~~~--~~~~~~~--~~g~y~wvl~npr~l 113 (113)
T cd06554 77 CVDVVDCLTQEEYRE--QYPWGKS--EESPYAWVLANPRPL 113 (113)
T ss_pred EEEEEecccHHHhhc--cCccccc--cCCCEEEEeCCCEeC
Confidence 999999998665431 1111110 147899999999986
No 2
>KOG2845 consensus Activating signal cointegrator 1 [Transcription]
Probab=99.09 E-value=1.2e-11 Score=124.16 Aligned_cols=112 Identities=41% Similarity=0.770 Sum_probs=94.8
Q ss_pred cccceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173 10 YTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL 89 (304)
Q Consensus 10 ~~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI 89 (304)
....++|++||||++|+.|.+.++.|.|...|||+++|-+.++.+....|.++..+|..+... + ++-+||.|++
T Consensus 393 v~~~~~s~~qp~as~l~~g~~r~~~~~~~~~h~~~~~i~~ta~~~~~~~iqe~~~~y~~~~~~-----~-~~~~~~~~~~ 466 (505)
T KOG2845|consen 393 VTGDCLSVHQPWASLLVNGSRRVEGRDLYSRHRGRLEIAATAKLPNWLHIQEKAGDYERLRGK-----I-FEVDYPSGSL 466 (505)
T ss_pred cccchhhccCCCcccccccccccccccccccccchhhhhhhccCCchhhHHHHhccHHHhhcc-----c-ccccCCchhh
Confidence 456799999999999999999999999999999999999999999888888998888765432 3 6789999999
Q ss_pred EEEEEEeceeeccccccccccccccccccCcceEEeccCCeec
Q 036173 90 LGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKL 132 (304)
Q Consensus 90 IGvVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L 132 (304)
+|+|.|.+|...+++. +..+ .-++++.|+++|.||..|
T Consensus 467 ~~~~~~~~~~~~~q~~--~~~~---~q~~d~~~v~v~~n~~~~ 504 (505)
T KOG2845|consen 467 LGCVKVDECLHLEQFY--DLYP---SQESDSPFVFVCKNPEEL 504 (505)
T ss_pred hcchHHHHhhhHHHHH--Hhcc---CCCCCCCceEEecChhhc
Confidence 9999999999876643 2223 235689999999999876
No 3
>PF04266 ASCH: ASCH domain; InterPro: IPR007374 The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain (IPR002478 from INTERPRO). It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation [].; PDB: 1TE7_A 2Z0T_C 1WK2_A 2DP9_A 1T62_A 3S9X_A 2E5O_A 1XNE_A 3IUW_B 1S04_A.
Probab=98.58 E-value=1.5e-07 Score=74.74 Aligned_cols=55 Identities=31% Similarity=0.474 Sum_probs=48.7
Q ss_pred eeecchHHHHHHhcceeeeeccCCCC---CCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173 15 LTMHQPWASLLVYGIKRVEGRSWPAP---LRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG 91 (304)
Q Consensus 15 LSIrQPWAsLIv~G~K~IEnRSW~T~---yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG 91 (304)
|||++||+.+|+.|.|++|.|.|.++ +||.++|+.+.. +.|.++|
T Consensus 1 Lsi~~~~~~~Il~G~Kt~e~R~~~~~~~~~~g~~~iv~~~~--------------------------------~~~~~~~ 48 (105)
T PF04266_consen 1 LSIKPEYAELILSGKKTAEIRLWDEKLPKIRGDLVIVFNTD--------------------------------PDGKPVG 48 (105)
T ss_dssp EEECHHHHHHHHTTSSCEEEECSTTTCCTTTTCEEEEETET--------------------------------TTTEEEE
T ss_pred CEechHHHHHHHCCCcEEEEEcccceeccCCCCEEEEEEEe--------------------------------cCCcEEE
Confidence 79999999999999999999999988 789999995542 3578999
Q ss_pred EEEEeceeec
Q 036173 92 CVEVVGCVRC 101 (304)
Q Consensus 92 vVdLVDCl~~ 101 (304)
.|++++|...
T Consensus 49 ~v~v~~V~~~ 58 (105)
T PF04266_consen 49 IVEVTEVEVY 58 (105)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999999875
No 4
>KOG2845 consensus Activating signal cointegrator 1 [Transcription]
Probab=97.94 E-value=1.3e-06 Score=88.41 Aligned_cols=177 Identities=23% Similarity=0.188 Sum_probs=118.0
Q ss_pred CCCCcccceeeecchHHH--HHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 036173 6 KQGNYTNPCLTMHQPWAS--LLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQH 83 (304)
Q Consensus 6 ~~~~~~mKALSIrQPWAs--LIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~ 83 (304)
+.+.++..+|.|+|||+. .++.|.|..+.+.|+.+.++..|+|
T Consensus 132 k~k~~k~inl~i~~~e~s~~i~~~grk~C~CQg~kHpLi~NCL~C----------------------------------- 176 (505)
T KOG2845|consen 132 KGKSLKNINLAIRQPEASLAILLKGRKPCNCQGRKHPLINNCLGC----------------------------------- 176 (505)
T ss_pred cccccccHHHHhccHHHhhhhhhcCCccccccCCcCchhhccccc-----------------------------------
Confidence 346678889999999999 8899999999999998877755543
Q ss_pred CCcceEEEEEEEec-eeeccccccccccccccccccCcceEEeccCCeecccceeccCcCCCccCCHHHHHHHHhcccCC
Q 036173 84 YPVSRLLGCVEVVG-CVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPV 162 (304)
Q Consensus 84 ~P~GaIIGvVdLVD-Cl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd~~l~~aa~~gL~~v 162 (304)
|.||+..+=.+ |..+...- .. .+. ++-+.=. .| +.|.. |.-.|=+-....+....+.|++-
T Consensus 177 ---GkIVCeQEGsGPC~fCg~~V---~t-~ee----q~~l~~~-~n-~~~l~-----G~~~iss~~~~A~~~k~klLe~d 238 (505)
T KOG2845|consen 177 ---GKIVCEQEGSGPCGFCGTPV---CT-REE----QGILNRE-LN-QKLLK-----GKVSISSALEKAYVHKDKLLEYD 238 (505)
T ss_pred ---ceeEEEecCcccccccCCee---ec-hhH----HHHHHHH-hh-hhhcc-----CccccchhhhhHHHHHhhhcccc
Confidence 34554433222 32222110 00 000 0000000 11 22221 55545554556777888999999
Q ss_pred CCCCcccccCCCCCCCCccCCCC-ccccCCCCccc----------ccccchhHHHHHhhhHHHhhhhhcccccccccccc
Q 036173 163 KGPLPVKFPLPDAQDPFSLKPGS-MSTNFPENKST----------AVEKSSTLNAAIAGARAAATQFNKKNQDLLTNVMQ 231 (304)
Q Consensus 163 ~~~~p~~~~~~~~~~~~s~~p~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (304)
...--.++.++|+.|+|++++++ +++.-.+.... +..+...|+.++||+.+++++++.+.+.+.++..+
T Consensus 239 ~nS~rrt~viddqsDyf~~~s~~wlS~~erE~l~k~~eE~eelea~eR~~~~~t~DfaGrk~~~e~~~~~E~~~~~~~~~ 318 (505)
T KOG2845|consen 239 RNSERRTKVIDDQSDYFSLESSSWLSALEREKLEKRQEELEELEAAERQKVKLTFDFAGRKALEEETSIKEYESRLDNIL 318 (505)
T ss_pred ccccccccccCCcchhhhccccccccHHHHHHHHhhHHHHHHHHHHHhhheeeeeeccccccccchhhhhhHhhcccccc
Confidence 99999999999999999999998 45443322111 33456678899999999999999999998888777
Q ss_pred cCCc
Q 036173 232 DEKP 235 (304)
Q Consensus 232 ~~~~ 235 (304)
+.-+
T Consensus 319 ~~~t 322 (505)
T KOG2845|consen 319 DAIT 322 (505)
T ss_pred chhh
Confidence 6533
No 5
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional
Probab=96.95 E-value=0.0021 Score=62.45 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCcccceeeecchHHHHHHhc-ceeeeecc-CCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 036173 7 QGNYTNPCLTMHQPWASLLVYG-IKRVEGRS-WPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHY 84 (304)
Q Consensus 7 ~~~~~mKALSIrQPWAsLIv~G-~K~IEnRS-W~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~ 84 (304)
..++..--|||+.=||..|+.| .|++|-|- ++..-...++|.+|+
T Consensus 185 ~~~~~~vLLSIKPeyaekIl~G~~K~~EfRK~~~~~~~~~VvIYaTs--------------------------------- 231 (311)
T PRK12279 185 EETTETIMISTSPKNAQVLFDDLEKNVIFYKTTPVNKVLRVLVYVTS--------------------------------- 231 (311)
T ss_pred ccCCcEEEEEeCHHHHHHHhCCCceEEEEEeccCCCCCCEEEEEecC---------------------------------
Confidence 4567778899999999999999 59999986 443223478888764
Q ss_pred CcceEEEEEEEeceeeccccccccccccccc---------cc-cCcceEEeccCCeeccccee
Q 036173 85 PVSRLLGCVEVVGCVRCEELASWEVVPEGVR---------LE-AQTDFCWLCENPQKLLVPFE 137 (304)
Q Consensus 85 P~GaIIGvVdLVDCl~~ee~s~W~~~peg~~---------Le-~~g~YaWvL~Npr~L~~PIP 137 (304)
|.|.|||.++|.+++..+--..|......-. .. .+..|+..+.+++.+..|+.
T Consensus 232 PvkkIVGef~i~~Ii~~~P~~lW~k~~~~sGIsk~~F~~Yf~g~~~a~Ai~I~~~~~y~~Pi~ 294 (311)
T PRK12279 232 PTKKVVGEFDLESVEIGAISSIWRKYGKQSVISKKEYDAYYEGKDKAHALVSKKAYKYRNPKD 294 (311)
T ss_pred CCcEEEEEEEEEEEEeCCHHHHHHHHhhccCCCHHHHHHHhCCCceEEEEEeCCceeCCCCCC
Confidence 5689999999999998544345643211101 11 13569999999999999986
No 6
>COG4933 Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.07 Score=45.89 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=61.7
Q ss_pred eeecchHHHHHHhcceeeeeccCCC--CCCcc-EEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceEEE
Q 036173 15 LTMHQPWASLLVYGIKRVEGRSWPA--PLRGR-LWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRLLG 91 (304)
Q Consensus 15 LSIrQPWAsLIv~G~K~IEnRSW~T--~yRGp-LlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaIIG 91 (304)
+||+.=+|..|+-|.|++|-|.|.. ..+|. ++|.+++ |.++|||
T Consensus 1 mSIkPk~a~~Ifdg~K~velrR~~p~~~~~~~~~~VY~Ts---------------------------------P~~aVvG 47 (124)
T COG4933 1 MSIKPKFAEAIFDGVKKVELRRITPVPIVEESTVIVYATS---------------------------------PVKAVVG 47 (124)
T ss_pred CccchhhHHHHhcCcceEEEEEecCCCcccCcEEEEEecC---------------------------------chhheEE
Confidence 5889999999999999999999974 45775 5555543 3467899
Q ss_pred EEEEeceeecccccccccccc--------cc--cccc-CcceEEeccCCeeccccee
Q 036173 92 CVEVVGCVRCEELASWEVVPE--------GV--RLEA-QTDFCWLCENPQKLLVPFE 137 (304)
Q Consensus 92 vVdLVDCl~~ee~s~W~~~pe--------g~--~Le~-~g~YaWvL~Npr~L~~PIP 137 (304)
.+++..+....--+-|..... ++ .+++ +.-|+-.+.+|+....|++
T Consensus 48 ef~~e~V~~~~~~siw~~~~~~~~i~~~~e~~~Y~~G~k~A~ai~~~~p~~y~~P~~ 104 (124)
T COG4933 48 EFTAERVEQVAIESIWRKAGKSGSIKIGAEYLEYFEGAKEAHAIEVSKPRRYTRPVT 104 (124)
T ss_pred EEEeeeEEEcchHHHHHHhcccccccchHHHHHHHhccceeEEEEeCCceecCCCcC
Confidence 988877665432233432110 00 0122 3558999999999999886
No 7
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=84.94 E-value=1 Score=36.66 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=27.6
Q ss_pred eeecchHHHHHHhcceeeeeccCC----CCCCccEEEE
Q 036173 15 LTMHQPWASLLVYGIKRVEGRSWP----APLRGRLWIH 48 (304)
Q Consensus 15 LSIrQPWAsLIv~G~K~IEnRSW~----T~yRGpLlIH 48 (304)
|.++.+++.||+.|.|++|.|... ....|..+|-
T Consensus 2 l~~~~~~~~lI~~G~Ktat~r~~~~~~~~~k~Gd~~i~ 39 (105)
T cd06541 2 LMFGDRYGQLVVSGRKTIEIRSLDIYEQLPKAGDYLII 39 (105)
T ss_pred ceechHHHHHHHCCCCEEEEEcchhcccCCCCCCEEEE
Confidence 788999999999999999999863 3456875553
No 8
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=83.00 E-value=4.2 Score=32.09 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=25.4
Q ss_pred eeecchHHHHHHhcceeeeeccCCC--CCCccEEE
Q 036173 15 LTMHQPWASLLVYGIKRVEGRSWPA--PLRGRLWI 47 (304)
Q Consensus 15 LSIrQPWAsLIv~G~K~IEnRSW~T--~yRGpLlI 47 (304)
|.+.+-++.+|+.|.|+++.|.|.- ...|.+++
T Consensus 2 ~~f~~~~~~~I~sG~Kt~t~R~~~~~~~~~Gd~~~ 36 (100)
T cd06552 2 ILFFERYEEAILSGKKTATIRDGGESHLKPGDVVE 36 (100)
T ss_pred eechHHHHHHHHcCCCEEEEeCCCccCCCCCCEEE
Confidence 5677889999999999999999753 23565443
No 9
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=60.84 E-value=24 Score=32.55 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=33.5
Q ss_pred ccceeeecchHHHHHHhcceeeeeccCCCC-CCcc-EEEEec
Q 036173 11 TNPCLTMHQPWASLLVYGIKRVEGRSWPAP-LRGR-LWIHAA 50 (304)
Q Consensus 11 ~mKALSIrQPWAsLIv~G~K~IEnRSW~T~-yRGp-LlIHAS 50 (304)
-|+-|-+.+=|+.-|+.|.|+.=.|-|.+. -+|. ++||++
T Consensus 5 ~~k~l~f~gkY~~~ii~GkKr~TIR~G~~~~k~g~eVyIh~~ 46 (188)
T COG2411 5 LMKHLEFDGKYKDKIIDGKKRTTIRLGKIVLKPGSEVYIHSG 46 (188)
T ss_pred hhhheeechHHHHHHhcCceeEEEecCcccCCCCCEEEEEEC
Confidence 467788899999999999999999999544 3785 999964
No 10
>PRK04980 hypothetical protein; Provisional
Probab=53.16 E-value=50 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=41.1
Q ss_pred ceeeecchHHHHHHhcceeeeeccCC--CCCCcc-EEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173 13 PCLTMHQPWASLLVYGIKRVEGRSWP--APLRGR-LWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL 89 (304)
Q Consensus 13 KALSIrQPWAsLIv~G~K~IEnRSW~--T~yRGp-LlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI 89 (304)
..||+-+=+.-+|+.|.|++=.|... .-.-|. +.||. +..|..
T Consensus 3 ~~itF~~r~~~~ILsGkKTiTiRd~se~~~~~G~~~~V~~----------------------------------~e~g~~ 48 (102)
T PRK04980 3 NKITFFERFEADILAGRKTITIRDESESHFKPGDVLRVGT----------------------------------FEDDRY 48 (102)
T ss_pred ceeeEHHHHHHHHHcCCceEEeeCCcccCCCCCCEEEEEE----------------------------------CCCCcE
Confidence 46888999999999999999999843 344575 55551 124778
Q ss_pred EEEEEEeceee
Q 036173 90 LGCVEVVGCVR 100 (304)
Q Consensus 90 IGvVdLVDCl~ 100 (304)
+|.++|..+.+
T Consensus 49 ~c~ieI~sV~~ 59 (102)
T PRK04980 49 FCTIEVLSVSP 59 (102)
T ss_pred EEEEEEEEEEE
Confidence 99999988766
No 11
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=36.12 E-value=22 Score=29.96 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=19.9
Q ss_pred ecchHHHHHHhcceeeeeccCCCC
Q 036173 17 MHQPWASLLVYGIKRVEGRSWPAP 40 (304)
Q Consensus 17 IrQPWAsLIv~G~K~IEnRSW~T~ 40 (304)
+.-+|-.+|..|.|+||.|--.-+
T Consensus 5 l~~~~F~~I~~G~KtiEiRlnD~k 28 (109)
T cd06555 5 LEEEPFELIKSGKKTIEIRLNDEK 28 (109)
T ss_pred cChHHHHHHHcCCCEEEEEecccc
Confidence 456888999999999999976544
No 12
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=28.34 E-value=28 Score=28.11 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=9.5
Q ss_pred CCCCCCCCcceEEEEEEEeceeeccc
Q 036173 78 LQFPQHYPVSRLLGCVEVVGCVRCEE 103 (304)
Q Consensus 78 ~~~P~~~P~GaIIGvVdLVDCl~~ee 103 (304)
+.+|.++..|.+||.|++.||.....
T Consensus 13 ~~Vp~~l~~g~~lg~V~f~dC~~~~~ 38 (90)
T PF08758_consen 13 FEVPSNLEAGQPLGKVNFEDCTGRRR 38 (90)
T ss_dssp E----SS-SS--EEE---B--SS---
T ss_pred EEcCchhhCCcEEEEEEeccCCCCCc
Confidence 35688899999999999999976443
No 13
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=27.33 E-value=54 Score=31.28 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=26.6
Q ss_pred HHHHHHHHhcccCCCCCCcccccCCCCCCCCc
Q 036173 149 KKVYEAAVRGLTPVKGPLPVKFPLPDAQDPFS 180 (304)
Q Consensus 149 ~~l~~aa~~gL~~v~~~~p~~~~~~~~~~~~s 180 (304)
.++++-|.+.=.---.+.|.+|++.||+-||-
T Consensus 129 EelIKyAHrIS~~NaVsAPLTW~~GDprRPyP 160 (272)
T KOG4552|consen 129 EELIKYAHRISKHNAVSAPLTWQMGDPRRPYP 160 (272)
T ss_pred HHHHHHHHHhhhcccccCccccccCCCCCCCC
Confidence 35777777777777789999999999999994
No 14
>PHA02447 hypothetical protein
Probab=22.92 E-value=83 Score=25.03 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=28.1
Q ss_pred CCCCCCCCccCCCCccccCCCCcc-------cccccchhHHHHHhhhHHHhhhhh
Q 036173 172 LPDAQDPFSLKPGSMSTNFPENKS-------TAVEKSSTLNAAIAGARAAATQFN 219 (304)
Q Consensus 172 ~~~~~~~~s~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (304)
||--+---|+.|.+....|.-+-+ .+---.++|-+|+|.|.|||..|.
T Consensus 26 lpgdrrnawinpsdvagdfrwsvedntcarvlawgyeetldaamaaaaaaaaeyr 80 (86)
T PHA02447 26 LPGDRRNAWINPSDVAGDFRWSVEDNTCARVLAWGYEETLDAAMAAAAAAAAEYR 80 (86)
T ss_pred cCCcccccccChhhcccceeeeeccchHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 454444555555554443321111 122345789999999999988875
Done!