Query 036173
Match_columns 304
No_of_seqs 137 out of 307
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e5o_A Activating signal coint 100.0 1.6E-45 5.5E-50 318.1 15.3 149 9-164 4-152 (154)
2 2dp9_A Hypothetical protein TT 99.9 1.4E-26 4.7E-31 193.0 7.6 100 11-148 6-117 (124)
3 2kku_A Uncharacterized protein 88.3 0.47 1.6E-05 41.3 4.5 95 10-137 26-147 (161)
4 2z0t_A Putative uncharacterize 69.3 2.9 9.9E-05 33.9 2.8 34 15-48 5-42 (109)
5 1xne_A Hypothetical protein PF 68.4 4.4 0.00015 33.0 3.8 34 14-47 5-42 (113)
6 1te7_A Hypothetical UPF0267 pr 59.2 5 0.00017 31.5 2.4 37 12-48 3-41 (103)
7 2pbd_V VAsp, vasodilator-stimu 39.0 7.8 0.00027 26.9 0.4 12 201-212 21-32 (43)
8 3iuw_A Activating signal coint 22.8 75 0.0026 24.5 3.6 34 14-47 11-45 (83)
9 2p5d_A UPF0310 protein mjecl36 15.1 67 0.0023 26.6 1.8 15 84-98 56-70 (147)
10 2ku8_A Acanthaporin; antimicro 12.4 81 0.0028 22.7 1.3 14 202-215 11-24 (61)
No 1
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=318.07 Aligned_cols=149 Identities=40% Similarity=0.854 Sum_probs=128.5
Q ss_pred CcccceeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcce
Q 036173 9 NYTNPCLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSR 88 (304)
Q Consensus 9 ~~~mKALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~Ga 88 (304)
..+.+|||||||||+||++|+|+||||+|+|+|||+|||||++|.++.+.+.++++||+.++.. ++.+|++||+|+
T Consensus 4 ~~~~~aLSirQPwAslIv~G~K~iE~R~W~T~~RG~l~IhAa~k~~~~~~i~~~e~~~r~~~~~----~~~~p~~~p~G~ 79 (154)
T 2e5o_A 4 GSSGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGK----DVEFPNDYPSGC 79 (154)
T ss_dssp CCCCEEEEECTTHHHHHHHTSCCEEEESSCCCCCEEEEEEECSSCCCHHHHHHHHHHHHHHHCT----TCCCCSCCCSSE
T ss_pred CCCCcEEEEeCcHHHHHHcCCceeeccCCcCCCCceEEEEEcCCCCCHHHHHHHHHHHHhhccc----ccCCcccCCCce
Confidence 3567899999999999999999999999999999999999998888888889999999876532 367899999999
Q ss_pred EEEEEEEeceeeccccccccccccccccccCcceEEeccCCeecccceeccCcCCCccCCHHHHHHHHhcccCCCC
Q 036173 89 LLGCVEVVGCVRCEELASWEVVPEGVRLEAQTDFCWLCENPQKLLVPFEMRGYQGVYNLEKKVYEAAVRGLTPVKG 164 (304)
Q Consensus 89 IIGvVdLVDCl~~ee~s~W~~~peg~~Le~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd~~l~~aa~~gL~~v~~ 164 (304)
|||+|+|+||+..+++.. ..+. ...+.++.|+|+|+||++|++|||++|++|||+|+++++++|++||+++..
T Consensus 80 ilG~v~lvdc~~~ee~~~--~~~~-~~~~~~~~y~wvl~n~~~L~~PiP~kG~~~i~~v~~~~~~~~~~~l~~~~~ 152 (154)
T 2e5o_A 80 LLGCVDLIDCLSQKQFKE--QFPD-ISQESDSPFVFICKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNK 152 (154)
T ss_dssp EEEEEEEEEEEETTHHHH--HCTT-STTTCCSSEEEEEEEEEECSSCCBCCCCSSEEECCHHHHHHHHHGGGCCCS
T ss_pred EEEEEEEEEEecHHHhhh--hccc-cCcccCCcEEEEeCCceEccCceeecCCcceEeCCHHHHHHHHHHhhhhhh
Confidence 999999999998766531 1110 111246889999999999999999999999999999999999999998753
No 2
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=99.93 E-value=1.4e-26 Score=192.97 Aligned_cols=100 Identities=28% Similarity=0.376 Sum_probs=80.8
Q ss_pred ccc-eeeecchHHHHHHhcceeeeeccCCCCCCccEEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Q 036173 11 TNP-CLTMHQPWASLLVYGIKRVEGRSWPAPLRGRLWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYPVSRL 89 (304)
Q Consensus 11 ~mK-ALSIrQPWAsLIv~G~K~IEnRSW~T~yRGpLlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P~GaI 89 (304)
.|| ||||+||||++|++|.|++|+|+|+|+|||+|+|||+ |+|
T Consensus 6 ~mk~~LSIkqpyA~lIl~G~K~~E~R~~~t~~rg~v~Ihat------------------------------------G~i 49 (124)
T 2dp9_A 6 RPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSG------------------------------------GRL 49 (124)
T ss_dssp CCSCEEECCTTHHHHHHTTCCCEEEESSCCCCCEEEEEEET------------------------------------TEE
T ss_pred ccccEEEEecHHHHHHHCCCceEEeeCCCCCCCCEEEEEEC------------------------------------CCE
Confidence 578 9999999999999999999999999999999999972 689
Q ss_pred EEEEEEecee-e--ccccccccc-----cccccc--c-ccCcceEEeccCCeecccceeccCcCCCccCC
Q 036173 90 LGCVEVVGCV-R--CEELASWEV-----VPEGVR--L-EAQTDFCWLCENPQKLLVPFEMRGYQGVYNLE 148 (304)
Q Consensus 90 IGvVdLVDCl-~--~ee~s~W~~-----~peg~~--L-e~~g~YaWvL~Npr~L~~PIPvkG~lGIw~vd 148 (304)
||+|+|+||+ . .+++ |.. .++.+. + .+...|+|+|+||++|+.|||++|++|.|.|-
T Consensus 50 vG~~~i~d~~g~~~~eel--~~~~~~~~~~~~~~~~y~~g~~~ya~~l~~~~~l~~Pi~~~g~~g~~~w~ 117 (124)
T 2dp9_A 50 IGQADLVGVEGPFSVEEL--LAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFV 117 (124)
T ss_dssp EEEEEEEEEEEEECHHHH--GGGHHHHCCCHHHHHHHHTTSCEEEEEEEEEEEEEEEEECCCTTTCCCCC
T ss_pred EEEEEEEEEecCCCHHHH--HHHhhhcCCCHHHhhhhhcCCceEEEEECCcEEcCCCcccccCCCcEEEE
Confidence 9999999999 3 2221 221 111000 1 23457999999999999999999999988775
No 3
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=88.31 E-value=0.47 Score=41.34 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=64.6
Q ss_pred cccceeeecchHHHHHH-hcceeeeec--cCCCCCCcc-EEEEeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 036173 10 YTNPCLTMHQPWASLLV-YGIKRVEGR--SWPAPLRGR-LWIHAASKIPEEATIKAMEEFYREIYAVNGITDLQFPQHYP 85 (304)
Q Consensus 10 ~~mKALSIrQPWAsLIv-~G~K~IEnR--SW~T~yRGp-LlIHASkk~~~~~~i~a~e~fyr~il~~~G~~~~~~P~~~P 85 (304)
+..--|||.-=+|..|+ .|.|++=-| .|+---.|. |+|.||. |
T Consensus 26 i~~VllSIkpey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~---------------------------------P 72 (161)
T 2kku_A 26 IVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSH---------------------------------E 72 (161)
T ss_dssp CEEEEECCSSSTTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCS---------------------------------T
T ss_pred eEEEEEecCHHHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcC---------------------------------C
Confidence 34557899999999999 999999333 355556785 7776654 3
Q ss_pred cceEEEEEEEeceee-ccccccccccccccccc---------c-------------CcceEEeccCCeeccccee
Q 036173 86 VSRLLGCVEVVGCVR-CEELASWEVVPEGVRLE---------A-------------QTDFCWLCENPQKLLVPFE 137 (304)
Q Consensus 86 ~GaIIGvVdLVDCl~-~ee~s~W~~~peg~~Le---------~-------------~g~YaWvL~Npr~L~~PIP 137 (304)
.+.++|.++|.+++. .+--.-|....+...|. + ...|+-.|+|++++..|+.
T Consensus 73 ~~~iVGea~I~~Ii~~~~P~~lWe~~~d~~gITkeef~~Yy~g~~~w~~~~~~~~~~~~~aI~L~~Vrky~~pvk 147 (161)
T 2kku_A 73 DTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIK 147 (161)
T ss_dssp TCBCCEEEEEEEEEEESCTHHHHHHTSTTBSSCHHHHHHHHHHHHHTSSCCCCSSCCCEEEEEEEEEEECCSCBC
T ss_pred CcEEEEEEEEEEEEecCCHHHHHHHhCcccCcCHHHHHHHhcccccccccccccccccEEEEEecceEeCCCCCC
Confidence 467999999999987 32223454332222111 0 1169999999999988764
No 4
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=69.32 E-value=2.9 Score=33.94 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=28.2
Q ss_pred eeecchHHHHHHhcceeeeeccCCCCC----CccEEEE
Q 036173 15 LTMHQPWASLLVYGIKRVEGRSWPAPL----RGRLWIH 48 (304)
Q Consensus 15 LSIrQPWAsLIv~G~K~IEnRSW~T~y----RGpLlIH 48 (304)
|.|..+|-.+|..|.|+||.|--.-+| .|.+++-
T Consensus 5 m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f 42 (109)
T 2z0t_A 5 MGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIF 42 (109)
T ss_dssp ECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEE
T ss_pred EEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEE
Confidence 678899999999999999999877776 5775543
No 5
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=68.35 E-value=4.4 Score=33.01 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=28.0
Q ss_pred eeeecchHHHHHHhcceeeeeccCCCCC----CccEEE
Q 036173 14 CLTMHQPWASLLVYGIKRVEGRSWPAPL----RGRLWI 47 (304)
Q Consensus 14 ALSIrQPWAsLIv~G~K~IEnRSW~T~y----RGpLlI 47 (304)
-|.|..+|-.+|..|.|+||.|--.-+| .|.+++
T Consensus 5 ~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~ 42 (113)
T 1xne_A 5 RLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKII 42 (113)
T ss_dssp EECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEE
T ss_pred EEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEE
Confidence 4788999999999999999999776666 576443
No 6
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=59.24 E-value=5 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=29.5
Q ss_pred cceeeecchHHHHHHhcceeeeeccCCC--CCCccEEEE
Q 036173 12 NPCLTMHQPWASLLVYGIKRVEGRSWPA--PLRGRLWIH 48 (304)
Q Consensus 12 mKALSIrQPWAsLIv~G~K~IEnRSW~T--~yRGpLlIH 48 (304)
.+-|++.+.++.+|+.|.|+...|.+.. ..-|.+++.
T Consensus 3 ~~~i~f~~~~~~~Il~G~KT~T~R~~~e~~~~~Gd~~~v 41 (103)
T 1te7_A 3 PNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRV 41 (103)
T ss_dssp CCSCCCCHHHHHHHHTCCCEEEEECGGGCCCCTTSEEEE
T ss_pred CcEEEEcHHHHHHHHCCCCEEEEeCCCCCCCCCCCEEEE
Confidence 4568999999999999999999998752 335876654
No 7
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=38.96 E-value=7.8 Score=26.94 Aligned_cols=12 Identities=58% Similarity=0.750 Sum_probs=10.5
Q ss_pred chhHHHHHhhhH
Q 036173 201 SSTLNAAIAGAR 212 (304)
Q Consensus 201 ~~~~~~~~~~~~ 212 (304)
.++|++|||||+
T Consensus 21 ~~GLAaalAgAK 32 (43)
T 2pbd_V 21 APGLAAAIAGAK 32 (43)
T ss_dssp CCCHHHHHHTCC
T ss_pred ccHHHHHHhhhh
Confidence 479999999996
No 8
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=22.78 E-value=75 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=27.0
Q ss_pred eeeecchHHHHHHhcceeeeeccCCCCC-CccEEE
Q 036173 14 CLTMHQPWASLLVYGIKRVEGRSWPAPL-RGRLWI 47 (304)
Q Consensus 14 ALSIrQPWAsLIv~G~K~IEnRSW~T~y-RGpLlI 47 (304)
-|-|..-|=.+|..|.|++|.|--.-+| -|.+++
T Consensus 11 ~lki~~~~F~~V~~G~Kt~EiR~nDr~~~vGD~l~ 45 (83)
T 3iuw_A 11 TLKIETEFFKAVKERRKTFEIRKNDRNFQVGDILI 45 (83)
T ss_dssp EEEEEHHHHHHHHTTSCCEEEEECCSCCCTTCEEE
T ss_pred EEEcCHHHHHHHHcCCcEEEEEecccCCCCCCEEE
Confidence 4778888899999999999999776555 476554
No 9
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=15.08 E-value=67 Score=26.61 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=11.9
Q ss_pred CCcceEEEEEEEece
Q 036173 84 YPVSRLLGCVEVVGC 98 (304)
Q Consensus 84 ~P~GaIIGvVdLVDC 98 (304)
....+|+|+++|++-
T Consensus 56 ~~~~~ivGi~eV~~e 70 (147)
T 2p5d_A 56 YKPPYIRGVYEVVSE 70 (147)
T ss_dssp CBCCEEEEEEEECSC
T ss_pred CCCCEEEEEEEEecc
Confidence 345689999999983
No 10
>2ku8_A Acanthaporin; antimicrobial peptide, antimicrobial protein; NMR {Acanthamoeba culbertsoni} PDB: 2kuj_A 2lrd_A 2lre_A
Probab=12.37 E-value=81 Score=22.66 Aligned_cols=14 Identities=57% Similarity=0.508 Sum_probs=11.2
Q ss_pred hhHHHHHhhhHHHh
Q 036173 202 STLNAAIAGARAAA 215 (304)
Q Consensus 202 ~~~~~~~~~~~~~~ 215 (304)
-.-++|||||-||.
T Consensus 11 vacaaaiagavaac 24 (61)
T 2ku8_A 11 VACAAAIAGAVAAC 24 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45679999999875
Done!