BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036175
         (361 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IFE|A Chain A, 1.55 Angstrom Resolution Crystal Structure Of Peptidase T
           (Pept-1) From Bacillus Anthracis Str. 'ames Ancestor'
          Length = 434

 Score = 31.2 bits (69), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 147 PATLKKEVSVNGFLQDKAIKRDQFT--SVKPLLHEEFDENHIS 187
           PA   K+V V GFL       D FT  +VKP +HE FD N I+
Sbjct: 88  PANTDKDVPVIGFLAHLDTATD-FTGKNVKPQIHENFDGNAIT 129


>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
 pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
          Length = 368

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 111 PNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQF 170
           P+E LGSL  G L+F  SG+   L      P++ +  A       VNG  QD A    Q 
Sbjct: 190 PSEDLGSLHPGALLFRASGHPPSL------PTMADALAHGADVNWVNGG-QDNATPLIQA 242

Query: 171 TSVKPLLHEEF 181
           T+   LL  EF
Sbjct: 243 TAANSLLACEF 253


>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
           Repeat Domain Of Acap1
 pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
           Repeat Domain Of Acap1
          Length = 368

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 111 PNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQF 170
           P+E LGSL  G L+F  SG+   L      P++ +  A       VNG  QD A    Q 
Sbjct: 190 PSEDLGSLHPGALLFRASGHPPSL------PTMADALAHGADVNWVNGG-QDNATPLIQA 242

Query: 171 TSVKPLLHEEF 181
           T+   LL  EF
Sbjct: 243 TAANSLLACEF 253


>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
           With Integrin Beta1 Peptide
 pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
           With Integrin Beta1 Peptide
          Length = 390

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 111 PNEKLGSLQKGLLVFDQSGNQTQLVYSSVCPSVLNTPATLKKEVSVNGFLQDKAIKRDQF 170
           P+E LGSL  G L+F  SG+   L      P++ +  A       VNG  QD A    Q 
Sbjct: 190 PSEDLGSLHPGALLFRASGHPPSL------PTMADALAHGADVNWVNGG-QDNATPLIQA 242

Query: 171 TSVKPLLHEEF 181
           T+   LL  EF
Sbjct: 243 TAANSLLACEF 253


>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
 pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
          Length = 977

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 27/99 (27%)

Query: 256 PNKRQKLLNGG-----------YNKSSQTDTACSVQLEGSHECDNDAESG---YANGQTQ 301
           P+K  KL+NG            Y    Q  T   +Q +GS        SG   Y    T+
Sbjct: 648 PHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGS------TTSGCWIYTGSYTE 701

Query: 302 KEEIDFILGNMQSRKDKIHTALRILQGIIPGANGKDPLS 340
           K       GNM +R+DK  T ++   G+ PG     P++
Sbjct: 702 K-------GNMAARRDKTQTDMQAKIGLYPGWTWAWPVN 733


>pdb|1QVB|A Chain A, Crystal Structure Of The Beta-Glycosidase From The
           Hyperthermophile Thermosphaera Aggregans
 pdb|1QVB|B Chain B, Crystal Structure Of The Beta-Glycosidase From The
           Hyperthermophile Thermosphaera Aggregans
          Length = 481

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 10  YRQHSAWQLPDLNCMRTSLDPRQPECLPSLIAPENYMFSANAALPGYVS 58
           Y  + AW++ +L  M ++++       P+++  + YMF      PGY+S
Sbjct: 188 YAAYIAWKMGELPVMWSTMNE------PNVVYEQGYMFVKGGFPPGYLS 230


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,695,116
Number of Sequences: 62578
Number of extensions: 421466
Number of successful extensions: 581
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 6
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)