Query 036175
Match_columns 361
No_of_seqs 117 out of 334
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.3 9.2E-13 3.1E-17 104.5 5.2 53 308-360 10-63 (82)
2 4h10_B Circadian locomoter out 99.2 1.1E-11 3.9E-16 97.1 7.0 51 309-359 13-64 (71)
3 4ati_A MITF, microphthalmia-as 99.2 1.3E-11 4.5E-16 104.0 6.3 54 306-359 29-86 (118)
4 1a0a_A BHLH, protein (phosphat 99.2 2.8E-12 9.6E-17 97.8 1.5 51 307-357 5-62 (63)
5 4h10_A ARYL hydrocarbon recept 99.2 9.9E-12 3.4E-16 97.6 2.9 47 308-354 13-63 (73)
6 1an4_A Protein (upstream stimu 99.1 9E-12 3.1E-16 94.1 1.9 50 308-357 9-64 (65)
7 1nkp_B MAX protein, MYC proto- 99.0 3.1E-10 1.1E-14 89.4 6.2 51 309-359 7-59 (83)
8 1hlo_A Protein (transcription 99.0 2.7E-10 9.2E-15 89.4 5.7 52 309-360 17-70 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.0 4.2E-10 1.4E-14 90.6 5.9 51 309-359 11-64 (88)
10 3u5v_A Protein MAX, transcript 98.9 1.2E-09 4.1E-14 86.2 4.8 52 309-360 10-65 (76)
11 1nlw_A MAD protein, MAX dimeri 98.7 3.5E-08 1.2E-12 78.3 6.7 51 309-359 6-59 (80)
12 4f3l_A Mclock, circadian locom 98.5 7E-08 2.4E-12 91.4 6.3 48 309-356 17-65 (361)
13 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 1.9E-07 6.4E-12 89.8 4.4 47 308-354 17-67 (387)
14 1mdy_A Protein (MYOD BHLH doma 98.3 5.7E-07 1.9E-11 69.7 5.0 48 310-357 18-67 (68)
15 2ql2_B Neurod1, neurogenic dif 98.3 9.2E-07 3.1E-11 66.8 5.8 48 310-357 8-58 (60)
16 2lfh_A DNA-binding protein inh 97.9 7.8E-06 2.7E-10 63.9 4.5 46 309-354 19-67 (68)
17 4ath_A MITF, microphthalmia-as 97.7 4.1E-05 1.4E-09 61.8 5.7 44 316-359 4-51 (83)
18 4aya_A DNA-binding protein inh 96.9 0.0016 5.4E-08 53.9 6.2 48 311-358 32-82 (97)
19 2djv_A Methionyl-tRNA syntheta 35.1 61 0.0021 25.3 5.1 34 320-359 26-59 (79)
20 1m2x_A Class B carbapenemase B 33.5 11 0.00036 32.1 0.5 32 327-358 190-221 (223)
21 3ggz_E Vacuolar protein-sortin 29.3 26 0.0009 23.3 1.7 15 313-327 14-28 (29)
22 1pd7_B MAD1; PAH2, SIN3, eukar 28.1 62 0.0021 21.0 3.3 22 335-356 1-22 (26)
23 1a7t_A Metallo-beta-lactamase; 27.8 33 0.0011 29.3 2.7 32 327-358 200-231 (232)
24 1p3q_Q VPS9P, vacuolar protein 25.1 40 0.0014 25.0 2.3 26 310-335 3-28 (54)
25 1wr6_A ADP-ribosylation factor 23.3 1E+02 0.0035 25.4 4.7 43 317-359 11-57 (111)
26 2fhx_A SPM-1; metallo-beta-lac 22.4 38 0.0013 28.8 2.0 31 327-357 215-245 (246)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.33 E-value=9.2e-13 Score=104.49 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=49.2
Q ss_pred ccchhhhhHHHHHHHHHHHHhcCCCC-CCCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175 308 ILGNMQSRKDKIHTALRILQGIIPGA-NGKDPLSLLDEAIDYLQSLKLKAVALG 360 (361)
Q Consensus 308 ~~~seR~RReKI~erl~~Lq~LVPg~-~k~DkaSvLdeAI~YlK~Lq~qVk~Lg 360 (361)
+...||+||++||++|..|+.|||++ .++|+++||.+||+||++||.+++.|.
T Consensus 10 H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~ 63 (82)
T 1am9_A 10 HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLK 63 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999998 799999999999999999999999873
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=97.10 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=46.7
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC-CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA-NGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~-~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
.-.||+||++||++|..|+.|||+. .|+||++||..||+|||.||.++.=|
T Consensus 13 n~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 13 NKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 3469999999999999999999986 48999999999999999999998755
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.21 E-value=1.3e-11 Score=104.04 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=47.6
Q ss_pred ccccchhhhhHHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 306 DFILGNMQSRKDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 306 ~s~~~seR~RReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
.++...||+||++||++|..|+.|||++. |++|++||+.||+|||+||.+++.|
T Consensus 29 ~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l 86 (118)
T 4ati_A 29 DNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 86 (118)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999875 5789999999999999999999877
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.20 E-value=2.8e-12 Score=97.77 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=45.0
Q ss_pred cccchhhhhHHHHHHHHHHHHhcCCCC-------CCCChhhhHHHHHHHHHHHHHHHH
Q 036175 307 FILGNMQSRKDKIHTALRILQGIIPGA-------NGKDPLSLLDEAIDYLQSLKLKAV 357 (361)
Q Consensus 307 s~~~seR~RReKI~erl~~Lq~LVPg~-------~k~DkaSvLdeAI~YlK~Lq~qVk 357 (361)
++..+||+||++||..|..|++|||++ .+..+|+||+.||+|||.||.+|+
T Consensus 5 ~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 5 SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp GGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 345689999999999999999999975 355699999999999999998764
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.16 E-value=9.9e-12 Score=97.55 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=43.1
Q ss_pred ccchhhhhHHHHHHHHHHHHhcCCCC----CCCChhhhHHHHHHHHHHHHH
Q 036175 308 ILGNMQSRKDKIHTALRILQGIIPGA----NGKDPLSLLDEAIDYLQSLKL 354 (361)
Q Consensus 308 ~~~seR~RReKI~erl~~Lq~LVPg~----~k~DkaSvLdeAI~YlK~Lq~ 354 (361)
..-.||+||+|||+.|..|+.|||.+ .|+|||+||+.||+|||.|+.
T Consensus 13 H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 13 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999986 699999999999999999974
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.14 E-value=9e-12 Score=94.12 Aligned_cols=50 Identities=30% Similarity=0.417 Sum_probs=45.3
Q ss_pred ccchhhhhHHHHHHHHHHHHhcCCCCC------CCChhhhHHHHHHHHHHHHHHHH
Q 036175 308 ILGNMQSRKDKIHTALRILQGIIPGAN------GKDPLSLLDEAIDYLQSLKLKAV 357 (361)
Q Consensus 308 ~~~seR~RReKI~erl~~Lq~LVPg~~------k~DkaSvLdeAI~YlK~Lq~qVk 357 (361)
+...||+||++||+.|..|+.|||++. ++||++||..||+||+.||.+.+
T Consensus 9 H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred hchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999999986 67999999999999999998753
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.03 E-value=3.1e-10 Score=89.39 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=46.9
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
...||+||++||+.|..|+.+||.. .|++|++||..||+||+.|+.+++.|
T Consensus 7 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l 59 (83)
T 1nkp_B 7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999984 78999999999999999999888776
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.02 E-value=2.7e-10 Score=89.43 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=48.1
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHHHhC
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAVALG 360 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk~Lg 360 (361)
...||+||.+|++.|..|+.+||.. .|++|++||..||+||+.|+.+++.|.
T Consensus 17 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~ 70 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999986 589999999999999999999999873
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.00 E-value=4.2e-10 Score=90.59 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=46.6
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
...||+||++|++.|..|+.+||+. .|++|++||..||+||++|+.+.+.|
T Consensus 11 n~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l 64 (88)
T 1nkp_A 11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKL 64 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999985 58999999999999999999987764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.89 E-value=1.2e-09 Score=86.23 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=46.3
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCC---CCCC-ChhhhHHHHHHHHHHHHHHHHHhC
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPG---ANGK-DPLSLLDEAIDYLQSLKLKAVALG 360 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg---~~k~-DkaSvLdeAI~YlK~Lq~qVk~Lg 360 (361)
...||+||++||+.|..|+.+||. +.|. .|+.||..||+||++||.+++++.
T Consensus 10 N~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 10 NALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346999999999999999999995 3455 688999999999999999999985
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.67 E-value=3.5e-08 Score=78.29 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=46.2
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
...||+||..|++.|..|+.+||.+ .|..+++||..||+||+.|+.+.+.|
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999965 57889999999999999999998765
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.55 E-value=7e-08 Score=91.41 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=42.5
Q ss_pred cchhhhhHHHHHHHHHHHHhcCC-CCCCCChhhhHHHHHHHHHHHHHHH
Q 036175 309 LGNMQSRKDKIHTALRILQGIIP-GANGKDPLSLLDEAIDYLQSLKLKA 356 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVP-g~~k~DkaSvLdeAI~YlK~Lq~qV 356 (361)
+-.||+||+|||+.|..|++||| +..|+||++||..||.|||.|+...
T Consensus 17 ~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 17 NKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 34699999999999999999999 4569999999999999999998753
No 13
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.37 E-value=1.9e-07 Score=89.79 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=43.3
Q ss_pred ccchhhhhHHHHHHHHHHHHhcCC----CCCCCChhhhHHHHHHHHHHHHH
Q 036175 308 ILGNMQSRKDKIHTALRILQGIIP----GANGKDPLSLLDEAIDYLQSLKL 354 (361)
Q Consensus 308 ~~~seR~RReKI~erl~~Lq~LVP----g~~k~DkaSvLdeAI~YlK~Lq~ 354 (361)
.+.+||+||+|||+.|..|+.||| ...|+||++||..||.|||.||.
T Consensus 17 ~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred ccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 445799999999999999999999 67899999999999999999984
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.31 E-value=5.7e-07 Score=69.66 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=43.4
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCC--CCCChhhhHHHHHHHHHHHHHHHH
Q 036175 310 GNMQSRKDKIHTALRILQGIIPGA--NGKDPLSLLDEAIDYLQSLKLKAV 357 (361)
Q Consensus 310 ~seR~RReKI~erl~~Lq~LVPg~--~k~DkaSvLdeAI~YlK~Lq~qVk 357 (361)
..||+|+..||+.|..|+.+||.. .|+.|+.+|..||+|+++|+..++
T Consensus 18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999974 588999999999999999997653
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.30 E-value=9.2e-07 Score=66.84 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=43.5
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHH
Q 036175 310 GNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAV 357 (361)
Q Consensus 310 ~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk 357 (361)
..||+|+..||+.|..|+.+||.. .|+.|+.+|..||+|+++|+..++
T Consensus 8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999974 478999999999999999998764
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.94 E-value=7.8e-06 Score=63.90 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=41.4
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHH
Q 036175 309 LGNMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKL 354 (361)
Q Consensus 309 ~~seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~ 354 (361)
...||+|...||+.|..||.+||.. .|+.|+.+|.-||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3468999999999999999999975 578999999999999999983
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.73 E-value=4.1e-05 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCCC----CCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 316 KDKIHTALRILQGIIPGAN----GKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 316 ReKI~erl~~Lq~LVPg~~----k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
|..||+++..|..|||... +.+|.+||..||+|++.||.+++.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999753 6899999999999999998866544
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.0016 Score=53.93 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=42.1
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCC---CCCChhhhHHHHHHHHHHHHHHHHH
Q 036175 311 NMQSRKDKIHTALRILQGIIPGA---NGKDPLSLLDEAIDYLQSLKLKAVA 358 (361)
Q Consensus 311 seR~RReKI~erl~~Lq~LVPg~---~k~DkaSvLdeAI~YlK~Lq~qVk~ 358 (361)
.+|.|-..||+.|..||.+||.. .|+-|+.+|.-||+|++.|+.-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999999999964 4789999999999999999987764
No 19
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.14 E-value=61 Score=25.31 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCCCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 320 HTALRILQGIIPGANGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 320 ~erl~~Lq~LVPg~~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
-+.+|.|+. ......+++.||..|..||.+++.+
T Consensus 26 G~~VR~LKa------~kA~k~~i~~aV~~Ll~LKa~l~~~ 59 (79)
T 2djv_A 26 GNIVRELKA------QKADKNEVAAEVAKLLDLKKQLAVA 59 (79)
T ss_dssp HHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh------ccCcHhHhhHHHHHHHHHHHHHHHh
Confidence 456666662 2455678899999999999999876
No 20
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=33.51 E-value=11 Score=32.12 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.4
Q ss_pred HhcCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 036175 327 QGIIPGANGKDPLSLLDEAIDYLQSLKLKAVA 358 (361)
Q Consensus 327 q~LVPg~~k~DkaSvLdeAI~YlK~Lq~qVk~ 358 (361)
.-++||=...-....|..+++|++.++.+|++
T Consensus 190 ~~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 35788844332567999999999999999875
No 21
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=29.27 E-value=26 Score=23.29 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHH
Q 036175 313 QSRKDKIHTALRILQ 327 (361)
Q Consensus 313 R~RReKI~erl~~Lq 327 (361)
..+.+|+.+|||+||
T Consensus 14 eekEDkLAqRLRALR 28 (29)
T 3ggz_E 14 DEKEDKLAQRLRALR 28 (29)
T ss_pred chhhHHHHHHHHHHc
Confidence 356899999999998
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.12 E-value=62 Score=21.03 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=17.8
Q ss_pred CCChhhhHHHHHHHHHHHHHHH
Q 036175 335 GKDPLSLLDEAIDYLQSLKLKA 356 (361)
Q Consensus 335 k~DkaSvLdeAI~YlK~Lq~qV 356 (361)
+++.+.||-+|.+||...+.+.
T Consensus 1 ~~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999877654
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=27.76 E-value=33 Score=29.28 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=24.1
Q ss_pred HhcCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 036175 327 QGIIPGANGKDPLSLLDEAIDYLQSLKLKAVA 358 (361)
Q Consensus 327 q~LVPg~~k~DkaSvLdeAI~YlK~Lq~qVk~ 358 (361)
..++||=...-...+|+.+++||+.|+.+|+.
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 45788854433457899999999999988753
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.15 E-value=40 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.5
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCCC
Q 036175 310 GNMQSRKDKIHTALRILQGIIPGANG 335 (361)
Q Consensus 310 ~seR~RReKI~erl~~Lq~LVPg~~k 335 (361)
-++|.+|..-++.+..|+++.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 36788899999999999999999654
No 25
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=23.27 E-value=1e+02 Score=25.36 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcC----CCCCCCChhhhHHHHHHHHHHHHHHHHHh
Q 036175 317 DKIHTALRILQGII----PGANGKDPLSLLDEAIDYLQSLKLKAVAL 359 (361)
Q Consensus 317 eKI~erl~~Lq~LV----Pg~~k~DkaSvLdeAI~YlK~Lq~qVk~L 359 (361)
++|+.+++.|..|+ ||....+...+|.|-..=+|.+|-++..|
T Consensus 11 e~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL 57 (111)
T 1wr6_A 11 EEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKL 57 (111)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888777665 55554555579999999999999988776
No 26
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=22.44 E-value=38 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=24.1
Q ss_pred HhcCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 036175 327 QGIIPGANGKDPLSLLDEAIDYLQSLKLKAV 357 (361)
Q Consensus 327 q~LVPg~~k~DkaSvLdeAI~YlK~Lq~qVk 357 (361)
..++||=...-....|.++++||+.|+.+|+
T Consensus 215 ~~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 215 KIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp SEEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 3578885443336899999999999999885
Done!