BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036178
         (330 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
           Dehydrogenase (Acadsb)
 pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
           Dehydrogenase (Acadsb)
 pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
           Dehydrogenase (Acadsb)
 pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
           Dehydrogenase (Acadsb)
          Length = 404

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 275 ALQDRSGNTGGF----GSLDWHGSADHQGLFDLPNAVD-HASYWSQSTQWTDQDHPSLYL 329
           AL+ R+   G +    GS  W  SA+H GLF +   VD    Y   ++   D+D P L++
Sbjct: 159 ALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHI 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,750,626
Number of Sequences: 62578
Number of extensions: 268245
Number of successful extensions: 438
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 1
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)