Query 036178
Match_columns 330
No_of_seqs 155 out of 222
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 17:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 81.5 1 3.4E-05 31.7 2.8 38 32-69 15-55 (57)
2 1tfi_A Transcriptional elongat 80.6 1.3 4.6E-05 31.3 3.2 38 31-68 8-48 (50)
3 3h0g_I DNA-directed RNA polyme 69.3 3.6 0.00012 32.6 3.3 38 32-69 72-112 (113)
4 2fiy_A Protein FDHE homolog; F 65.1 2.7 9.4E-05 38.8 2.1 37 31-68 221-264 (309)
5 1twf_I B12.6, DNA-directed RNA 62.4 5.4 0.00018 32.0 3.1 40 32-71 72-114 (122)
6 3po3_S Transcription elongatio 60.3 4.3 0.00015 34.7 2.3 37 32-68 137-176 (178)
7 1pqv_S STP-alpha, transcriptio 57.6 5.4 0.00018 36.5 2.6 37 32-68 268-307 (309)
8 1k82_A Formamidopyrimidine-DNA 56.3 4.2 0.00015 36.3 1.7 31 30-65 238-268 (268)
9 1ee8_A MUTM (FPG) protein; bet 54.8 4.6 0.00016 36.1 1.6 31 30-65 233-263 (266)
10 2xzf_A Formamidopyrimidine-DNA 54.3 4.8 0.00016 35.9 1.7 31 30-65 240-270 (271)
11 3u6p_A Formamidopyrimidine-DNA 53.4 4.3 0.00015 36.4 1.2 31 30-65 243-273 (273)
12 3nw0_A Non-structural maintena 53.4 2.7 9.1E-05 37.1 -0.1 39 31-70 192-230 (238)
13 1k3x_A Endonuclease VIII; hydr 49.6 5.8 0.0002 35.2 1.4 31 30-65 232-262 (262)
14 3cw1_L U1 small nuclear ribonu 45.1 6.2 0.00021 30.6 0.8 17 56-72 2-18 (77)
15 3qt1_I DNA-directed RNA polyme 42.7 5.2 0.00018 33.1 0.0 38 32-69 92-132 (133)
16 4gat_A Nitrogen regulatory pro 38.9 21 0.00073 26.6 2.9 45 30-78 7-51 (66)
17 2gmg_A Hypothetical protein PF 37.3 16 0.00055 29.9 2.1 15 30-44 82-96 (105)
18 1gnf_A Transcription factor GA 36.5 16 0.00055 25.7 1.7 42 31-76 3-44 (46)
19 2pk7_A Uncharacterized protein 34.3 17 0.00056 27.3 1.6 30 31-67 7-36 (69)
20 2jny_A Uncharacterized BCR; st 34.2 14 0.00047 27.7 1.1 31 30-67 8-38 (67)
21 1pft_A TFIIB, PFTFIIBN; N-term 34.0 27 0.00092 23.5 2.5 34 30-69 3-36 (50)
22 2k2d_A Ring finger and CHY zin 31.1 18 0.00062 27.6 1.4 13 32-44 55-67 (79)
23 2kae_A GATA-type transcription 31.0 4 0.00014 31.1 -2.2 48 29-79 5-52 (71)
24 2jr6_A UPF0434 protein NMA0874 31.0 17 0.00058 27.1 1.2 31 30-67 6-36 (68)
25 2js4_A UPF0434 protein BB2007; 29.3 30 0.001 25.9 2.3 36 30-72 6-42 (70)
26 3dfx_A Trans-acting T-cell-spe 27.8 35 0.0012 25.4 2.4 45 30-78 5-49 (63)
27 2hf1_A Tetraacyldisaccharide-1 27.0 17 0.00057 27.2 0.5 30 31-67 7-36 (68)
28 1wd2_A Ariadne-1 protein homol 24.7 59 0.002 23.3 3.1 43 30-72 4-49 (60)
29 1p91_A Ribosomal RNA large sub 23.3 47 0.0016 27.1 2.6 38 33-79 3-41 (269)
30 2kdx_A HYPA, hydrogenase/ureas 23.2 41 0.0014 26.3 2.1 15 31-45 88-103 (119)
31 2con_A RUH-035 protein, NIN on 22.5 25 0.00087 27.2 0.8 37 30-81 13-49 (79)
32 2kpi_A Uncharacterized protein 22.3 45 0.0015 23.8 2.0 29 30-67 8-38 (56)
33 1z2q_A LM5-1; membrane protein 22.2 1.1E+02 0.0038 22.6 4.3 32 28-68 17-48 (84)
34 2zjr_Z 50S ribosomal protein L 22.1 38 0.0013 24.8 1.6 25 30-66 28-52 (60)
35 2yw8_A RUN and FYVE domain-con 21.3 53 0.0018 24.3 2.3 42 28-78 15-56 (82)
36 4hc9_A Trans-acting T-cell-spe 20.2 73 0.0025 25.6 3.1 46 29-78 56-101 (115)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=81.52 E-value=1 Score=31.66 Aligned_cols=38 Identities=18% Similarity=0.553 Sum_probs=25.2
Q ss_pred ccCCCCCCCCCceeeeecccCCCCC---Ccccccccccccc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQP---RHFCKNCRRYWTK 69 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QP---RhfCKsCrRYWT~ 69 (330)
..+||+|...+..|--.+-.....| .|.|..|.--|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999984433333333333344 3999999999976
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=80.59 E-value=1.3 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.627 Sum_probs=28.1
Q ss_pred CccCCCCCCCCCceeeeecccCCCCCC---ccccccccccc
Q 036178 31 QALKCPRCDSLNTKFCYYNNYNLSQPR---HFCKNCRRYWT 68 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn~~QPR---hfCKsCrRYWT 68 (330)
....||+|...+.-|=-.+..+...|- |.|..|..-|.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 457899999877766555555555553 89999998885
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.33 E-value=3.6 Score=32.61 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=24.5
Q ss_pred ccCCCCCCCCCceeeeecccCCCCCC---cccccccccccc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQPR---HFCKNCRRYWTK 69 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QPR---hfCKsCrRYWT~ 69 (330)
..+||+|...+..|-..+-.+...|- |.|..|.--|..
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 48899999876443322222222222 889999999974
No 4
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.11 E-value=2.7 Score=38.81 Aligned_cols=37 Identities=19% Similarity=0.541 Sum_probs=26.7
Q ss_pred CccCCCCCCCCCceeeeecccC-------CCCCCccccccccccc
Q 036178 31 QALKCPRCDSLNTKFCYYNNYN-------LSQPRHFCKNCRRYWT 68 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn-------~~QPRhfCKsCrRYWT 68 (330)
...+||.|... .++-|+.--. ..---+.|..|+.|+-
T Consensus 221 ~R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 46899999998 4677775443 1222389999999983
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=62.40 E-value=5.4 Score=32.02 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=28.0
Q ss_pred ccCCCCCCCCCceeeeecccCCCCCC---ccccccccccccCc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQPR---HFCKNCRRYWTKGG 71 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QPR---hfCKsCrRYWT~GG 71 (330)
...||+|...+.-|-..+-.+-..|- |.|..|.--|....
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 47899999866555444444444443 89999999998753
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=60.25 E-value=4.3 Score=34.75 Aligned_cols=37 Identities=16% Similarity=0.582 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCceeeeecccCCCCC---Cccccccccccc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQP---RHFCKNCRRYWT 68 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QP---RhfCKsCrRYWT 68 (330)
...||+|...+..|--.+-.+-.-| -|.|..|..-|.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 5689999965543221122222222 388999999985
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=57.64 E-value=5.4 Score=36.47 Aligned_cols=37 Identities=16% Similarity=0.594 Sum_probs=22.4
Q ss_pred ccCCCCCCCCCceeeeecccCCCCC---Cccccccccccc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQP---RHFCKNCRRYWT 68 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QP---RhfCKsCrRYWT 68 (330)
...||+|...+..|-=.+..+-..| -|.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4689999955443311122222223 289999999885
No 8
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=56.27 E-value=4.2 Score=36.28 Aligned_cols=31 Identities=13% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRR 65 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrR 65 (330)
....+||||...=.|.-+ . .+.-|||..|++
T Consensus 238 R~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 238 RKGEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp CTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cCCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 346789999987666544 2 355599999985
No 9
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=54.76 E-value=4.6 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=22.7
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRR 65 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrR 65 (330)
....+||||...=.|.-+ . .+.-|||..|++
T Consensus 233 R~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 233 REGLPCPACGRPVERRVV-A----GRGTHFCPTCQG 263 (266)
T ss_dssp CTTSBCTTTCCBCEEEES-S----SCEEEECTTTTT
T ss_pred cCCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 456889999987665433 2 355599999997
No 10
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=54.26 E-value=4.8 Score=35.92 Aligned_cols=31 Identities=29% Similarity=0.662 Sum_probs=22.7
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRR 65 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrR 65 (330)
....+||||...=.|.-+ . .+.-|||..|++
T Consensus 240 R~G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 240 KTGEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp CTTSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 456889999987666544 2 355599999996
No 11
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=53.38 E-value=4.3 Score=36.40 Aligned_cols=31 Identities=29% Similarity=0.682 Sum_probs=22.4
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRR 65 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrR 65 (330)
....+||||...=.|.-+ . .+.-|||..|++
T Consensus 243 R~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 243 RQGNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp CTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCcCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 456799999987665443 2 255599999985
No 12
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=53.36 E-value=2.7 Score=37.12 Aligned_cols=39 Identities=23% Similarity=0.578 Sum_probs=30.8
Q ss_pred CccCCCCCCCCCceeeeecccCCCCCCccccccccccccC
Q 036178 31 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKG 70 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~G 70 (330)
....||.|...=+..|+.+=. ..+....|..|+..|+..
T Consensus 192 ~g~~C~~C~~~~H~~C~~~~~-~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 192 QGQSCETCGIRMHLPCVAKYF-QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SCEECSSSCCEECHHHHHHHT-TTCSSCBCTTTCCBCCSC
T ss_pred CCcccCccChHHHHHHHHHHH-HhCCCCCCCCCCCCCCCC
Confidence 357899998888888986543 456678999999999865
No 13
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=49.61 E-value=5.8 Score=35.24 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=21.7
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRR 65 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrR 65 (330)
....+||+|...=.|.-+ . .+.-|||..|++
T Consensus 232 R~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 232 RDGEPCERCGSIIEKTTL-S----SRPFYWCPGCQH 262 (262)
T ss_dssp CTTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCcCCCCCCCCEeEEEEE-C----CCCeEECCCCCC
Confidence 345689999987655433 2 345599999985
No 14
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=45.12 E-value=6.2 Score=30.62 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=14.5
Q ss_pred CCccccccccccccCcc
Q 036178 56 PRHFCKNCRRYWTKGGV 72 (330)
Q Consensus 56 PRhfCKsCrRYWT~GGt 72 (330)
|||||+-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999987744
No 15
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=42.74 E-value=5.2 Score=33.11 Aligned_cols=38 Identities=26% Similarity=0.631 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCceeeeecccCCCCC---Ccccccccccccc
Q 036178 32 ALKCPRCDSLNTKFCYYNNYNLSQP---RHFCKNCRRYWTK 69 (330)
Q Consensus 32 ~l~CPRC~S~nTKFCYYNNYn~~QP---RhfCKsCrRYWT~ 69 (330)
..+||+|...+..|=..+-....-| -|.|..|.--|..
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 4789999976654333232222222 2889999999975
No 16
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=38.91 E-value=21 Score=26.65 Aligned_cols=45 Identities=20% Similarity=0.500 Sum_probs=32.3
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccC
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 78 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPV 78 (330)
..+..|-.|...+|-. +=. ...-+ .+|-+|.-||-.-|.+|-+..
T Consensus 7 ~~~~~C~~C~t~~Tp~-WR~--gp~G~-~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPL-WRR--NPEGQ-PLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSCCCTTTCCCCCSS-CEE--ETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCc-CCc--CCCCC-CccHHHHHHHHHcCCCCchhh
Confidence 5678999999988751 111 11222 899999999999999876644
No 17
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.28 E-value=16 Score=29.87 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=11.8
Q ss_pred CCccCCCCCCCCCce
Q 036178 30 HQALKCPRCDSLNTK 44 (330)
Q Consensus 30 ~~~l~CPRC~S~nTK 44 (330)
..+..||+|.|.+..
T Consensus 82 ~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 82 NIPSRCPKCKSEWIE 96 (105)
T ss_dssp SCCSSCSSSCCCCBC
T ss_pred CCCCCCcCCCCCccC
Confidence 356789999998866
No 18
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=36.45 E-value=16 Score=25.67 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=30.0
Q ss_pred CccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccc
Q 036178 31 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNV 76 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNV 76 (330)
+...|..|....|-. +-.- .....+|-+|.-||-..|..|-+
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRD--RTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCC--TTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--CccC--CCCCccchHHHHHHHHcCCCCCC
Confidence 467899999887742 1111 12238999999999999998743
No 19
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.32 E-value=17 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=20.9
Q ss_pred CccCCCCCCCCCceeeeecccCCCCCCcccccccccc
Q 036178 31 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYW 67 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYW 67 (330)
+.+.||.|...-. | ........|+.|++-+
T Consensus 7 eiL~CP~ck~~L~---~----~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK---L----SADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE---E----CTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe---E----eCCCCEEEcCCCCcEe
Confidence 6789999996422 2 2335668899998755
No 20
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=34.17 E-value=14 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=21.4
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYW 67 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYW 67 (330)
-+.+.||.|... .-| ....-...|+.|++-+
T Consensus 8 LeiL~CP~ck~~---L~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 8 LEVLACPKDKGP---LRY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp TCCCBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred HHHhCCCCCCCc---CeE----eCCCCEEEcCCCCccc
Confidence 367999999983 222 2235568899998755
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.03 E-value=27 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTK 69 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~ 69 (330)
...+.||.|.+.+-.| ....-...|..|..-+..
T Consensus 3 ~~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 3 NKQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SSCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred CccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 3468999998854332 223456899999776543
No 22
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=31.06 E-value=18 Score=27.55 Aligned_cols=13 Identities=46% Similarity=0.956 Sum_probs=11.3
Q ss_pred ccCCCCCCCCCce
Q 036178 32 ALKCPRCDSLNTK 44 (330)
Q Consensus 32 ~l~CPRC~S~nTK 44 (330)
..+||.|.|.||+
T Consensus 55 g~kC~~C~SyNTr 67 (79)
T 2k2d_A 55 GMKCKICESYNTA 67 (79)
T ss_dssp CCCCTTTSCCCEE
T ss_pred cccCcCCCCcCeE
Confidence 3489999999998
No 23
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=31.02 E-value=4 Score=31.09 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccCC
Q 036178 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVG 79 (330)
Q Consensus 29 ~~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPVG 79 (330)
++....|-.|...+|- .+-.-..... .+|-+|.=||-+.|+.|-+..-
T Consensus 5 ~~~~~~C~nC~tt~Tp--~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 5 NKKSFQCSNCSVTETI--RWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp ---CCCCSSSCCSCCS--SCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCCCCcCCccCCCCCC--ccccCCCCCC-ccchHHHHHHHHhCCCCCcccc
Confidence 4677999999999875 2222111222 8999999999999998877653
No 24
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.95 E-value=17 Score=27.14 Aligned_cols=31 Identities=13% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYW 67 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYW 67 (330)
-+.+.||.|... .-| ........|+.|++-+
T Consensus 6 L~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 6 LDILVCPVTKGR---LEY----HQDKQELWSRQAKLAY 36 (68)
T ss_dssp SCCCBCSSSCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hhheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 367999999963 222 2234668899998654
No 25
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.29 E-value=30 Score=25.93 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCccccccccccc-cCcc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWT-KGGV 72 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT-~GGt 72 (330)
-+.+.||.|... .-|- .......|+.|++-+- +.|.
T Consensus 6 L~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 6 LDILVCPVCKGR---LEFQ----RAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCCBCTTTCCB---EEEE----TTTTEEEETTTTEEEEEETTE
T ss_pred hhheECCCCCCc---CEEe----CCCCEEEcCCCCceecCCCCe
Confidence 367999999983 3332 2356688999987553 4443
No 26
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=27.79 E-value=35 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.507 Sum_probs=32.3
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccC
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 78 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPV 78 (330)
.....|-.|....|-. +-.- .....+|-+|.=||-..|..|-+.+
T Consensus 5 ~~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp CTTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCc
Confidence 4567899999887742 1111 1223899999999999999887665
No 27
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.05 E-value=17 Score=27.18 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=20.6
Q ss_pred CccCCCCCCCCCceeeeecccCCCCCCcccccccccc
Q 036178 31 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYW 67 (330)
Q Consensus 31 ~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYW 67 (330)
+.+.||.|... .-|- .......|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGP---LVFD----KSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCB---CEEE----TTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeEe----CCCCEEEcCCCCcEe
Confidence 57899999963 3232 235668899998654
No 28
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.71 E-value=59 Score=23.30 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=29.8
Q ss_pred CCccCCCCCCCCCceeeeecccCCCC---CCccccccccccccCcc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQ---PRHFCKNCRRYWTKGGV 72 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~Q---PRhfCKsCrRYWT~GGt 72 (330)
....+||.|...-.|----|.-.-.. --+||-.|.+-|...|.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 35678999999888865444333332 35899999998987664
No 29
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=23.28 E-value=47 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.529 Sum_probs=24.5
Q ss_pred cCCCCCCCCCceeeeecccCCCCCCcccccccccc-ccCcccccccCC
Q 036178 33 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYW-TKGGVLRNVPVG 79 (330)
Q Consensus 33 l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYW-T~GGtLRNVPVG 79 (330)
+.||.|....+. ...-+.|..|..|- +++|-+.-+|+.
T Consensus 3 ~~Cp~C~~~~~~---------~~~~~~C~~~~~~~~~~~Gy~~~~~~~ 41 (269)
T 1p91_A 3 FSCPLCHQPLSR---------EKNSYICPQRHQFDMAKEGYVNLLPVQ 41 (269)
T ss_dssp BBCTTTCCBCEE---------ETTEEECTTCCEEEBCTTSCEECSCSS
T ss_pred ccCCCCCcccee---------CCCEEECCCCCcCCcCCCEEEEeeccc
Confidence 679999876543 11246788888774 456765555553
No 30
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.21 E-value=41 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.8
Q ss_pred Ccc-CCCCCCCCCcee
Q 036178 31 QAL-KCPRCDSLNTKF 45 (330)
Q Consensus 31 ~~l-~CPRC~S~nTKF 45 (330)
... .||.|.+.+.+|
T Consensus 88 ~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 88 LDYGVCEKCHSKNVII 103 (119)
T ss_dssp STTCCCSSSSSCCCEE
T ss_pred CCCCcCccccCCCcEE
Confidence 346 899999988776
No 31
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.50 E-value=25 Score=27.23 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=28.5
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccCCCC
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGG 81 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPVGGG 81 (330)
.-.+.|-.|-... ..-+|+||..|.. .+|+.|+|--.
T Consensus 13 ~~iLrC~aCf~~t----------~~~~k~FCp~CGn-----~TL~Rvsvsvd 49 (79)
T 2con_A 13 SYILRCHGCFKTT----------SDMNRVFCGHCGN-----KTLKKVSVTIN 49 (79)
T ss_dssp CEEEECSSSCCEE----------SCSSCCSCSSSCC-----SCCEEEECBCC
T ss_pred eeeeEecccceEC----------CCcccccccccCc-----ccceEEEEEEC
Confidence 4678899997653 4478999999964 69999998543
No 32
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.34 E-value=45 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.626 Sum_probs=20.5
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCcccc--cccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCK--NCRRYW 67 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCK--sCrRYW 67 (330)
-+.+.||.|... .- |.. ....|+ .|++-+
T Consensus 8 L~iL~CP~c~~~---L~-~~~-----~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAP---LE-ERD-----AELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSC---EE-EET-----TEEEECSSSCCCEE
T ss_pred HhheeCCCCCCc---ce-ecC-----CEEEcCCcCCCcEE
Confidence 467999999984 22 232 667899 897654
No 33
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.20 E-value=1.1e+02 Score=22.64 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=22.5
Q ss_pred CCCCccCCCCCCCCCceeeeecccCCCCCCccccccccccc
Q 036178 28 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWT 68 (330)
Q Consensus 28 ~~~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT 68 (330)
++.+...|..|... | ++..-||-|+.|.+-.=
T Consensus 17 pd~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 17 EDEDAPACNGCGCV---F------TTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp CTTTCCBCTTTCCB---C------CTTSCCEECTTTCCEEC
T ss_pred cCCCCCCCcCcCCc---c------ccchhcccccCCCcEEC
Confidence 45677889988875 3 34467898888876543
No 34
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.12 E-value=38 Score=24.78 Aligned_cols=25 Identities=36% Similarity=0.931 Sum_probs=20.6
Q ss_pred CCccCCCCCCCCCceeeeecccCCCCCCccccccccc
Q 036178 30 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRY 66 (330)
Q Consensus 30 ~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRY 66 (330)
.....||-|... + .|.+.|.+|.-|
T Consensus 28 p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred CCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 467889999875 4 899999999966
No 35
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.32 E-value=53 Score=24.29 Aligned_cols=42 Identities=21% Similarity=0.670 Sum_probs=27.7
Q ss_pred CCCCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccC
Q 036178 28 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 78 (330)
Q Consensus 28 ~~~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPV 78 (330)
++.+...|..|... | ++..-||-|+.|.+-.=..=.-..+|+
T Consensus 15 ~d~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C~~Cs~~~~~l 56 (82)
T 2yw8_A 15 KDDEATHCRQCEKE---F------SISRRKHHCRNCGHIFCNTCSSNELAL 56 (82)
T ss_dssp CCCCCCBCTTTCCB---C------BTTBCCEECTTTCCEECSGGGCEEECC
T ss_pred cCccCCcccCcCCc---c------cCccccccCCCCCCEEChHHhCCeeec
Confidence 44567789988864 3 356788999998876655444344454
No 36
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.19 E-value=73 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.486 Sum_probs=33.8
Q ss_pred CCCccCCCCCCCCCceeeeecccCCCCCCccccccccccccCcccccccC
Q 036178 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 78 (330)
Q Consensus 29 ~~~~l~CPRC~S~nTKFCYYNNYn~~QPRhfCKsCrRYWT~GGtLRNVPV 78 (330)
......|-.|....|-- .-. -...+.+|-+|.-||-..|..|-+.+
T Consensus 56 ~~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CCTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred ccccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCccc
Confidence 35678999999887641 111 12336899999999999999887765
Done!