Query 036179
Match_columns 339
No_of_seqs 296 out of 2507
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 7.1E-24 1.5E-28 168.0 8.2 101 117-221 2-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 6.1E-22 1.3E-26 156.9 6.9 90 17-106 1-106 (106)
3 KOG1187 Serine/threonine prote 97.0 0.00034 7.4E-09 67.2 2.0 30 310-339 61-90 (361)
4 PF08693 SKG6: Transmembrane a 94.3 0.043 9.2E-07 34.8 2.5 23 261-283 11-33 (40)
5 PLN00113 leucine-rich repeat r 93.6 0.12 2.6E-06 56.1 6.0 23 314-339 683-705 (968)
6 KOG3653 Transforming growth fa 93.0 0.19 4.2E-06 49.1 5.7 9 331-339 217-225 (534)
7 PF04478 Mid2: Mid2 like cell 91.3 0.24 5.3E-06 41.1 3.6 20 260-279 47-66 (154)
8 PF06697 DUF1191: Protein of u 88.3 0.57 1.2E-05 43.0 3.8 8 35-42 12-19 (278)
9 PTZ00382 Variant-specific surf 82.1 1.3 2.9E-05 34.1 2.7 20 260-279 64-83 (96)
10 PF15102 TMEM154: TMEM154 prot 80.3 1.2 2.6E-05 36.8 2.0 9 264-272 58-66 (146)
11 PF01102 Glycophorin_A: Glycop 79.7 0.82 1.8E-05 36.8 0.9 15 263-277 65-79 (122)
12 PF02009 Rifin_STEVOR: Rifin/s 68.6 1.9 4.1E-05 40.3 0.5 13 35-47 36-48 (299)
13 PF14575 EphA2_TM: Ephrin type 66.8 1.1 2.3E-05 32.9 -1.3 17 313-329 56-72 (75)
14 PF02480 Herpes_gE: Alphaherpe 66.2 1.9 4.2E-05 42.5 0.0 13 172-184 238-250 (439)
15 PF02439 Adeno_E3_CR2: Adenovi 64.7 6.6 0.00014 24.6 2.2 14 265-278 6-19 (38)
16 PF04478 Mid2: Mid2 like cell 62.3 6.9 0.00015 32.6 2.5 23 260-282 51-73 (154)
17 PF12273 RCR: Chitin synthesis 60.6 7.2 0.00016 31.6 2.4 14 280-293 16-29 (130)
18 PF12877 DUF3827: Domain of un 59.3 12 0.00026 38.3 4.1 18 60-77 74-92 (684)
19 PF14610 DUF4448: Protein of u 59.1 7.6 0.00016 33.7 2.4 18 262-279 157-174 (189)
20 PF15345 TMEM51: Transmembrane 57.7 15 0.00032 32.8 4.0 27 263-289 59-86 (233)
21 PF03302 VSP: Giardia variant- 57.2 10 0.00022 37.0 3.2 20 260-279 365-384 (397)
22 PF08374 Protocadherin: Protoc 53.3 14 0.00031 32.6 3.1 20 260-279 36-55 (221)
23 PF01102 Glycophorin_A: Glycop 51.9 5 0.00011 32.3 0.1 18 260-277 66-83 (122)
24 PTZ00382 Variant-specific surf 51.3 8 0.00017 29.7 1.1 20 260-279 68-87 (96)
25 TIGR01478 STEVOR variant surfa 51.1 7.3 0.00016 35.8 1.0 7 37-43 61-67 (295)
26 PTZ00046 rifin; Provisional 49.6 6.3 0.00014 37.6 0.4 16 184-199 226-242 (358)
27 TIGR01477 RIFIN variant surfac 48.3 6.8 0.00015 37.3 0.4 7 283-289 333-339 (353)
28 PLN03224 probable serine/threo 48.1 5.8 0.00012 40.0 -0.1 18 322-339 143-160 (507)
29 KOG1924 RhoA GTPase effector D 44.8 19 0.00042 37.7 3.0 11 312-322 711-721 (1102)
30 PF13908 Shisa: Wnt and FGF in 41.9 18 0.0004 30.9 2.1 6 211-216 32-37 (179)
31 PF05568 ASFV_J13L: African sw 40.6 21 0.00044 29.5 2.0 23 267-289 34-57 (189)
32 PF01299 Lamp: Lysosome-associ 37.9 13 0.00028 34.8 0.6 16 264-279 272-287 (306)
33 PHA03265 envelope glycoprotein 37.8 42 0.0009 31.9 3.8 10 86-95 112-121 (402)
34 KOG1025 Epidermal growth facto 32.8 12 0.00026 39.8 -0.6 13 327-339 699-711 (1177)
35 PF03229 Alpha_GJ: Alphavirus 32.4 86 0.0019 24.9 4.2 11 265-275 86-96 (126)
36 PF14991 MLANA: Protein melan- 32.1 10 0.00022 29.9 -0.9 7 280-286 44-50 (118)
37 PHA03283 envelope glycoprotein 30.7 54 0.0012 32.9 3.5 7 212-218 332-338 (542)
38 PF02009 Rifin_STEVOR: Rifin/s 30.7 20 0.00043 33.6 0.5 11 184-194 173-183 (299)
39 KOG0196 Tyrosine kinase, EPH ( 29.2 17 0.00037 38.4 -0.2 26 314-339 610-644 (996)
40 KOG2052 Activin A type IB rece 28.6 62 0.0013 32.1 3.4 11 329-339 216-226 (513)
41 PF01708 Gemini_mov: Geminivir 28.5 1.5E+02 0.0032 22.5 4.7 7 262-268 38-44 (91)
42 TIGR02205 septum_zipA cell div 28.4 24 0.00052 32.7 0.7 18 265-282 5-23 (284)
43 PHA00008 J DNA packaging prote 26.1 38 0.00083 19.0 0.9 11 86-96 11-21 (26)
44 PF15361 RIC3: Resistance to i 26.0 1.2E+02 0.0027 25.3 4.5 19 261-279 78-96 (152)
45 KOG1094 Discoidin domain recep 24.9 88 0.0019 32.3 3.8 11 329-339 543-553 (807)
46 PHA03281 envelope glycoprotein 23.6 1.4E+02 0.003 30.3 4.8 13 173-185 444-457 (642)
47 COG3889 Predicted solute bindi 23.4 1.2E+02 0.0025 32.2 4.4 10 168-177 728-737 (872)
48 PF04689 S1FA: DNA binding pro 23.0 1.6E+02 0.0035 20.8 3.7 19 260-278 11-29 (69)
49 PF12768 Rax2: Cortical protei 22.9 1.1E+02 0.0025 28.3 4.0 11 261-271 226-236 (281)
50 PLN03225 Serine/threonine-prot 22.8 23 0.00049 36.3 -0.7 18 322-339 130-147 (566)
51 PF04726 Microvir_J: Microviru 22.2 32 0.00069 18.8 0.1 11 86-96 10-20 (24)
52 PF15050 SCIMP: SCIMP protein 21.9 34 0.00074 27.3 0.3 10 314-323 94-103 (133)
53 PF11857 DUF3377: Domain of un 20.5 1.3E+02 0.0027 22.0 2.9 17 263-279 30-46 (74)
54 cd04894 ACT_ACR-like_1 ACT dom 20.1 62 0.0014 22.8 1.3 13 65-77 23-35 (69)
55 PF03302 VSP: Giardia variant- 20.1 54 0.0012 32.0 1.3 22 260-281 369-390 (397)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.90 E-value=7.1e-24 Score=168.02 Aligned_cols=101 Identities=38% Similarity=0.663 Sum_probs=76.4
Q ss_pred EEEe---eccc-CChhHHHHHHHHHHHHHHHHhhcCCcCCCCcccccccccCCcceEEEEeeccCCCChhhHhhHHHHHH
Q 036179 117 YAWN---IMNV-TDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPGAL 192 (339)
Q Consensus 117 ~~~n---~~~~-~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~ 192 (339)
..|+ .+++ +++..|+.++..||..|+..++.. +..+|+ +++.+ .+.++||||+||++||++++|+.||+.++
T Consensus 2 ~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~-~~~~f~--~~~~~-~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~ 77 (106)
T PF01657_consen 2 HFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASS-SSKGFA--TGSAG-SGPDTVYGLAQCRGDLSPSDCRACLADAV 77 (106)
T ss_dssp --E---SSB----TT-THHHHHHHHHHHHHHHGGGT-T-TEEE--EEE---ST---EEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhc-cccCcE--EeecC-CCCCeEEEEEEcCCCCChhhhHHHHHHHH
Confidence 4555 3444 456669999999999999998742 246899 88764 47789999999999999999999999999
Q ss_pred hhccccCCCCccEEEECcceeeeeecCCC
Q 036179 193 AQIPACCSGKQGGRVLTPSCNIRYERYPF 221 (339)
Q Consensus 193 ~~i~~~c~~~~g~~v~~~~C~lRy~~~~F 221 (339)
.+|+.+|++++||+|++++|+||||+++|
T Consensus 78 ~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 78 ANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp CCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.86 E-value=6.1e-22 Score=156.90 Aligned_cols=90 Identities=31% Similarity=0.678 Sum_probs=65.9
Q ss_pred cccCC-C-CCcc-CCCCchHHHHHHHHhhhhccCCCC--CCceeeecCCCCCeEeEEEecccCCcc-----------chH
Q 036179 17 YHFCP-P-ENNT-AAGGLFMYKVGALFRGKLYNEAGR--YLYYNATEGVDPNKVYGLYHCYFRLQS-----------NTI 80 (339)
Q Consensus 17 ~~~C~-~-~~~~-~~~s~y~~nl~~ll~~L~~~~~~~--~~f~~~~~G~~~d~vygl~~CrgD~~~-----------~~~ 80 (339)
|+.|+ + .++| +.+++|+.||+.||..|..+++.. .+|+++..|.++++||||+||++|+++ +.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 78899 3 3677 678899999999999999998643 479999999999999999999999997 788
Q ss_pred HhhCCCCcceEEEccceEEEEccccc
Q 036179 81 VTNCTGAKEAIVWYDQCMVRFSNSSF 106 (339)
Q Consensus 81 ~~~C~~~~~a~i~yd~C~lrysn~~f 106 (339)
.+.|+..++++|||+.|+|||++++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 88999999999999999999999987
No 3
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.99 E-value=0.00034 Score=67.24 Aligned_cols=30 Identities=43% Similarity=0.667 Sum_probs=27.6
Q ss_pred ccccccHHHHHHHHcCCCcCCccccCCCCC
Q 036179 310 IRMTFYEDRSIQATQHFSDENKLGEGGFGP 339 (339)
Q Consensus 310 ~~~~f~~~~l~~AT~nFse~N~IG~GGFG~ 339 (339)
....|++.+|++||+||+++|+||+||||+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~ 90 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGT 90 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeE
Confidence 456799999999999999999999999994
No 4
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.31 E-value=0.043 Score=34.85 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=13.1
Q ss_pred CceEEEehhhHHHHHHHHHHHHh
Q 036179 261 SRTWIAIGATASSIIVLVLSSFL 283 (339)
Q Consensus 261 ~~~ii~i~v~i~~~l~~l~~~~~ 283 (339)
..+.+++++++++++++++++++
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhh
Confidence 34456667777666666653333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=93.63 E-value=0.12 Score=56.09 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.2
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCCC
Q 036179 314 FYEDRSIQATQHFSDENKLGEGGFGP 339 (339)
Q Consensus 314 f~~~~l~~AT~nFse~N~IG~GGFG~ 339 (339)
++++++ ...|.++++||+|+||.
T Consensus 683 ~~~~~~---~~~~~~~~~ig~G~~g~ 705 (968)
T PLN00113 683 ITINDI---LSSLKEENVISRGKKGA 705 (968)
T ss_pred hhHHHH---HhhCCcccEEccCCCee
Confidence 444444 45688999999999984
No 6
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=93.00 E-value=0.19 Score=49.13 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=7.7
Q ss_pred ccccCCCCC
Q 036179 331 KLGEGGFGP 339 (339)
Q Consensus 331 ~IG~GGFG~ 339 (339)
+||+|+||.
T Consensus 217 li~~Grfg~ 225 (534)
T KOG3653|consen 217 LIGRGRFGC 225 (534)
T ss_pred HhhcCccce
Confidence 789999984
No 7
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.31 E-value=0.24 Score=41.09 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=13.8
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~ 279 (339)
.+.++|+++|++++.+++++
T Consensus 47 nknIVIGvVVGVGg~ill~i 66 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGI 66 (154)
T ss_pred CccEEEEEEecccHHHHHHH
Confidence 55688888888766555544
No 8
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=88.26 E-value=0.57 Score=42.97 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHhh
Q 036179 35 KVGALFRG 42 (339)
Q Consensus 35 nl~~ll~~ 42 (339)
-|+.++.+
T Consensus 12 ~LD~~lqd 19 (278)
T PF06697_consen 12 SLDALLQD 19 (278)
T ss_pred HHHHHHHH
Confidence 45555543
No 9
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=82.09 E-value=1.3 Score=34.06 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=10.5
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~ 279 (339)
+...|.+|++++++++.+++
T Consensus 64 s~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred ccccEEEEEeehhhHHHHHH
Confidence 44556666666554443333
No 10
>PF15102 TMEM154: TMEM154 protein family
Probab=80.26 E-value=1.2 Score=36.80 Aligned_cols=9 Identities=11% Similarity=-0.108 Sum_probs=4.8
Q ss_pred EEEehhhHH
Q 036179 264 WIAIGATAS 272 (339)
Q Consensus 264 ii~i~v~i~ 272 (339)
++.|+++++
T Consensus 58 iLmIlIP~V 66 (146)
T PF15102_consen 58 ILMILIPLV 66 (146)
T ss_pred EEEEeHHHH
Confidence 555556643
No 11
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.72 E-value=0.82 Score=36.78 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=6.6
Q ss_pred eEEEehhhHHHHHHH
Q 036179 263 TWIAIGATASSIIVL 277 (339)
Q Consensus 263 ~ii~i~v~i~~~l~~ 277 (339)
.+++|++++++.+++
T Consensus 65 ~i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIG 79 (122)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHH
Confidence 344455554443333
No 12
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=68.62 E-value=1.9 Score=40.27 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=6.6
Q ss_pred HHHHHHhhhhccC
Q 036179 35 KVGALFRGKLYNE 47 (339)
Q Consensus 35 nl~~ll~~L~~~~ 47 (339)
-+..++..+-.++
T Consensus 36 eMK~Vme~F~rqT 48 (299)
T PF02009_consen 36 EMKSVMENFDRQT 48 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 13
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=66.75 E-value=1.1 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=12.7
Q ss_pred cccHHHHHHHHcCCCcC
Q 036179 313 TFYEDRSIQATQHFSDE 329 (339)
Q Consensus 313 ~f~~~~l~~AT~nFse~ 329 (339)
.++|+|-.+|...|..|
T Consensus 56 P~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 56 PHTYEDPNQAVREFAKE 72 (75)
T ss_dssp GGGSSSHHHHHHHCSSB
T ss_pred cccccCHHHHHHHHHhh
Confidence 36788888888888654
No 14
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=66.16 E-value=1.9 Score=42.53 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=8.9
Q ss_pred EeeccCCCChhhH
Q 036179 172 LVQCIPYLSKPDC 184 (339)
Q Consensus 172 laQC~~Dls~~~C 184 (339)
+..|.++....+|
T Consensus 238 y~~C~~~~~~~~C 250 (439)
T PF02480_consen 238 YANCSPSGWPRRC 250 (439)
T ss_dssp EEEEBTTC-TTTT
T ss_pred hcCCCCCCCcCCC
Confidence 4569998766777
No 15
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.71 E-value=6.6 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=6.3
Q ss_pred EEehhhHHHHHHHH
Q 036179 265 IAIGATASSIIVLV 278 (339)
Q Consensus 265 i~i~v~i~~~l~~l 278 (339)
+++++++++.++++
T Consensus 6 IaIIv~V~vg~~ii 19 (38)
T PF02439_consen 6 IAIIVAVVVGMAII 19 (38)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555544444333
No 16
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=62.27 E-value=6.9 Score=32.62 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=16.2
Q ss_pred CCceEEEehhhHHHHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVLSSF 282 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~~~~ 282 (339)
-.++++++.++++++++++++++
T Consensus 51 VIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEEecccHHHHHHHHHhheeE
Confidence 67788888888777666665433
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.57 E-value=7.2 Score=31.62 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=7.5
Q ss_pred HHHhhhhhhccccc
Q 036179 280 SSFLLWRIKRRKER 293 (339)
Q Consensus 280 ~~~~~~rr~~~~~~ 293 (339)
++++.++.+||+++
T Consensus 16 ~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 16 LFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHhhc
Confidence 33444556666554
No 18
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=59.31 E-value=12 Score=38.31 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.2
Q ss_pred CCC-CeEeEEEecccCCcc
Q 036179 60 VDP-NKVYGLYHCYFRLQS 77 (339)
Q Consensus 60 ~~~-d~vygl~~CrgD~~~ 77 (339)
..| +.+|+.--=+|-++.
T Consensus 74 ~~~V~i~~aVr~~~~~LnG 92 (684)
T PF12877_consen 74 SGPVSITYAVRNGSGFLNG 92 (684)
T ss_pred CCCeEEEEEEecCceeecc
Confidence 344 789999888888886
No 19
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=59.12 E-value=7.6 Score=33.67 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=10.7
Q ss_pred ceEEEehhhHHHHHHHHH
Q 036179 262 RTWIAIGATASSIIVLVL 279 (339)
Q Consensus 262 ~~ii~i~v~i~~~l~~l~ 279 (339)
+..++|++++++++++++
T Consensus 157 ~~~laI~lPvvv~~~~~~ 174 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALI 174 (189)
T ss_pred ceeEEEEccHHHHHHHHH
Confidence 345667777666555554
No 20
>PF15345 TMEM51: Transmembrane protein 51
Probab=57.67 E-value=15 Score=32.80 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=13.2
Q ss_pred eEEEehhhHHHHHHHHH-HHHhhhhhhc
Q 036179 263 TWIAIGATASSIIVLVL-SSFLLWRIKR 289 (339)
Q Consensus 263 ~ii~i~v~i~~~l~~l~-~~~~~~rr~~ 289 (339)
.+..++|++++++++|. |+-++-|||+
T Consensus 59 SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred EEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445556555544444 5555444433
No 21
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=57.20 E-value=10 Score=36.98 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=14.1
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~ 279 (339)
+...|.+|.|+++++|.-|+
T Consensus 365 stgaIaGIsvavvvvVgglv 384 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLV 384 (397)
T ss_pred cccceeeeeehhHHHHHHHH
Confidence 56677788777776666555
No 22
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=53.31 E-value=14 Score=32.57 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=12.5
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~ 279 (339)
..+++++|+.++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIF 55 (221)
T ss_pred ceeeeeeeecchhhhHHHHH
Confidence 45566777777666655555
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.86 E-value=5 Score=32.31 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=9.6
Q ss_pred CCceEEEehhhHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVL 277 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~ 277 (339)
...+++++++++++++++
T Consensus 66 i~~Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHH
Confidence 345555666665554443
No 24
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=51.28 E-value=8 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=9.1
Q ss_pred CCceEEEehhhHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~ 279 (339)
...+.+++++.+++++.+++
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 34444555544444444443
No 25
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=51.07 E-value=7.3 Score=35.81 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=2.5
Q ss_pred HHHHhhh
Q 036179 37 GALFRGK 43 (339)
Q Consensus 37 ~~ll~~L 43 (339)
..+++.+
T Consensus 61 K~iid~~ 67 (295)
T TIGR01478 61 KEIIDKL 67 (295)
T ss_pred HHHHHHH
Confidence 3333333
No 26
>PTZ00046 rifin; Provisional
Probab=49.59 E-value=6.3 Score=37.60 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=6.7
Q ss_pred HhhHHHHHHhhc-cccC
Q 036179 184 CNVCLPGALAQI-PACC 199 (339)
Q Consensus 184 C~~CL~~a~~~i-~~~c 199 (339)
+..=|..++... ...|
T Consensus 226 ~~~~l~~~i~~~~~~~C 242 (358)
T PTZ00046 226 NVMSLVDAVYSLYNTSC 242 (358)
T ss_pred CHHHHHHHHHHHHhCcC
Confidence 444444444432 3345
No 27
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=48.32 E-value=6.8 Score=37.28 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=2.9
Q ss_pred hhhhhhc
Q 036179 283 LLWRIKR 289 (339)
Q Consensus 283 ~~~rr~~ 289 (339)
+++||++
T Consensus 333 LRYRRKK 339 (353)
T TIGR01477 333 LRYRRKK 339 (353)
T ss_pred HHhhhcc
Confidence 3444443
No 28
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=48.13 E-value=5.8 Score=40.05 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=16.0
Q ss_pred HHcCCCcCCccccCCCCC
Q 036179 322 ATQHFSDENKLGEGGFGP 339 (339)
Q Consensus 322 AT~nFse~N~IG~GGFG~ 339 (339)
.+++|...++||+||||+
T Consensus 143 ~~d~F~i~~~LG~GgFG~ 160 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGI 160 (507)
T ss_pred cccCceEeeEeecCCCeE
Confidence 467899999999999994
No 29
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.78 E-value=19 Score=37.72 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=6.4
Q ss_pred ccccHHHHHHH
Q 036179 312 MTFYEDRSIQA 322 (339)
Q Consensus 312 ~~f~~~~l~~A 322 (339)
.++.|++|+-+
T Consensus 711 ~rmpyeeik~~ 721 (1102)
T KOG1924|consen 711 FRMPYEEIKNV 721 (1102)
T ss_pred ccCCHHHHHHH
Confidence 34667777544
No 30
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=41.88 E-value=18 Score=30.90 Aligned_cols=6 Identities=50% Similarity=1.619 Sum_probs=4.1
Q ss_pred ceeeee
Q 036179 211 SCNIRY 216 (339)
Q Consensus 211 ~C~lRy 216 (339)
.|.+||
T Consensus 32 ~C~~ry 37 (179)
T PF13908_consen 32 TCSLRY 37 (179)
T ss_pred CccCcc
Confidence 577776
No 31
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=40.56 E-value=21 Score=29.48 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=8.8
Q ss_pred ehhhHHHHHHHHH-HHHhhhhhhc
Q 036179 267 IGATASSIIVLVL-SSFLLWRIKR 289 (339)
Q Consensus 267 i~v~i~~~l~~l~-~~~~~~rr~~ 289 (339)
|++++++.+++++ .++++.+|||
T Consensus 34 ILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344443333333 3333333333
No 32
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=37.87 E-value=13 Score=34.79 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=7.6
Q ss_pred EEEehhhHHHHHHHHH
Q 036179 264 WIAIGATASSIIVLVL 279 (339)
Q Consensus 264 ii~i~v~i~~~l~~l~ 279 (339)
++-|+|++++++++++
T Consensus 272 ~vPIaVG~~La~lvli 287 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLI 287 (306)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555544444433
No 33
>PHA03265 envelope glycoprotein D; Provisional
Probab=37.79 E-value=42 Score=31.94 Aligned_cols=10 Identities=10% Similarity=0.627 Sum_probs=6.0
Q ss_pred CCcceEEEcc
Q 036179 86 GAKEAIVWYD 95 (339)
Q Consensus 86 ~~~~a~i~yd 95 (339)
....-++||.
T Consensus 112 tYNATVaWYK 121 (402)
T PHA03265 112 TYSARLTWFK 121 (402)
T ss_pred ccccEEEEEE
Confidence 3456677873
No 34
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=32.76 E-value=12 Score=39.85 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=10.6
Q ss_pred CcCCccccCCCCC
Q 036179 327 SDENKLGEGGFGP 339 (339)
Q Consensus 327 se~N~IG~GGFG~ 339 (339)
..+.+||+|.||+
T Consensus 699 kk~kvLGsgAfGt 711 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGT 711 (1177)
T ss_pred hhhceecccccee
Confidence 4456999999996
No 35
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=32.36 E-value=86 Score=24.88 Aligned_cols=11 Identities=0% Similarity=0.039 Sum_probs=4.5
Q ss_pred EEehhhHHHHH
Q 036179 265 IAIGATASSII 275 (339)
Q Consensus 265 i~i~v~i~~~l 275 (339)
+..+++.++++
T Consensus 86 Lp~VIGGLcaL 96 (126)
T PF03229_consen 86 LPLVIGGLCAL 96 (126)
T ss_pred hhhhhhHHHHH
Confidence 44444433333
No 36
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=32.11 E-value=10 Score=29.86 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHhhhh
Q 036179 280 SSFLLWR 286 (339)
Q Consensus 280 ~~~~~~r 286 (339)
||++++|
T Consensus 44 CWYckRR 50 (118)
T PF14991_consen 44 CWYCKRR 50 (118)
T ss_dssp -------
T ss_pred heeeeec
Confidence 5554433
No 37
>PHA03283 envelope glycoprotein E; Provisional
Probab=30.75 E-value=54 Score=32.91 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=4.0
Q ss_pred eeeeeec
Q 036179 212 CNIRYER 218 (339)
Q Consensus 212 C~lRy~~ 218 (339)
|.++|..
T Consensus 332 fVv~yNg 338 (542)
T PHA03283 332 FVLLYNG 338 (542)
T ss_pred EEEEECC
Confidence 6666643
No 38
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.70 E-value=20 Score=33.58 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=4.7
Q ss_pred HhhHHHHHHhh
Q 036179 184 CNVCLPGALAQ 194 (339)
Q Consensus 184 C~~CL~~a~~~ 194 (339)
+..-|..++..
T Consensus 173 ~~~~l~~~i~~ 183 (299)
T PF02009_consen 173 NVSTLVGIIYA 183 (299)
T ss_pred cHHHHHHHHHH
Confidence 34444444443
No 39
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=29.15 E-value=17 Score=38.41 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=16.9
Q ss_pred ccHHHHHHHHcCC---------CcCCccccCCCCC
Q 036179 314 FYEDRSIQATQHF---------SDENKLGEGGFGP 339 (339)
Q Consensus 314 f~~~~l~~AT~nF---------se~N~IG~GGFG~ 339 (339)
++|+|=-+|...| .-+.+||.|-||.
T Consensus 610 ~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGE 644 (996)
T KOG0196|consen 610 HTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGE 644 (996)
T ss_pred ccccCccHHHHHhhhhcChhheEEEEEEecccccc
Confidence 5666554554444 3456899999984
No 40
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.57 E-value=62 Score=32.07 Aligned_cols=11 Identities=36% Similarity=0.903 Sum_probs=8.7
Q ss_pred CCccccCCCCC
Q 036179 329 ENKLGEGGFGP 339 (339)
Q Consensus 329 ~N~IG~GGFG~ 339 (339)
-..||+|.||.
T Consensus 216 ~e~IGkGRyGE 226 (513)
T KOG2052|consen 216 QEIIGKGRFGE 226 (513)
T ss_pred EEEecCccccc
Confidence 34789999984
No 41
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=28.52 E-value=1.5e+02 Score=22.47 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=2.9
Q ss_pred ceEEEeh
Q 036179 262 RTWIAIG 268 (339)
Q Consensus 262 ~~ii~i~ 268 (339)
..+++++
T Consensus 38 v~v~i~~ 44 (91)
T PF01708_consen 38 VEVAIFT 44 (91)
T ss_pred eeeeehH
Confidence 3344443
No 42
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=28.43 E-value=24 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=10.3
Q ss_pred EEehhhHHHHHHHHH-HHH
Q 036179 265 IAIGATASSIIVLVL-SSF 282 (339)
Q Consensus 265 i~i~v~i~~~l~~l~-~~~ 282 (339)
|.|++++++++++++ .+|
T Consensus 5 iLIIvGaiaI~aLl~hGlw 23 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLW 23 (284)
T ss_pred hHHHHHHHHHHHHHHcccc
Confidence 455566666666665 444
No 43
>PHA00008 J DNA packaging protein
Probab=26.14 E-value=38 Score=18.95 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=8.8
Q ss_pred CCcceEEEccc
Q 036179 86 GAKEAIVWYDQ 96 (339)
Q Consensus 86 ~~~~a~i~yd~ 96 (339)
..|+|++||-+
T Consensus 11 r~KGARLWYVG 21 (26)
T PHA00008 11 RRKGARLWYVG 21 (26)
T ss_pred ccCceEEEEec
Confidence 46999999954
No 44
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=26.01 E-value=1.2e+02 Score=25.26 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=10.8
Q ss_pred CceEEEehhhHHHHHHHHH
Q 036179 261 SRTWIAIGATASSIIVLVL 279 (339)
Q Consensus 261 ~~~ii~i~v~i~~~l~~l~ 279 (339)
.+.+++.++++-.+.++++
T Consensus 78 ~~g~~~~imPlYtiGI~~f 96 (152)
T PF15361_consen 78 GKGLMGQIMPLYTIGIVLF 96 (152)
T ss_pred CCchhhhHhHHHHHHHHHH
Confidence 3445667777755544444
No 45
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.85 E-value=88 Score=32.29 Aligned_cols=11 Identities=55% Similarity=1.120 Sum_probs=8.6
Q ss_pred CCccccCCCCC
Q 036179 329 ENKLGEGGFGP 339 (339)
Q Consensus 329 ~N~IG~GGFG~ 339 (339)
..+||||-||.
T Consensus 543 ~ekiGeGqFGE 553 (807)
T KOG1094|consen 543 KEKIGEGQFGE 553 (807)
T ss_pred hhhhcCcccce
Confidence 34899999984
No 46
>PHA03281 envelope glycoprotein E; Provisional
Probab=23.58 E-value=1.4e+02 Score=30.35 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.9
Q ss_pred eeccCC-CChhhHh
Q 036179 173 VQCIPY-LSKPDCN 185 (339)
Q Consensus 173 aQC~~D-ls~~~C~ 185 (339)
..|.++ .-+.+|-
T Consensus 444 ~nCs~~~~wp~~C~ 457 (642)
T PHA03281 444 QNCEHADNYTADCL 457 (642)
T ss_pred cCCCCCCCCCCCCC
Confidence 347765 3344664
No 47
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=23.44 E-value=1.2e+02 Score=32.22 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=5.4
Q ss_pred eEEEEeeccC
Q 036179 168 KLYTLVQCIP 177 (339)
Q Consensus 168 ~vYglaQC~~ 177 (339)
+|||+..-.+
T Consensus 728 tv~~sl~~~~ 737 (872)
T COG3889 728 TVYGSLEVFP 737 (872)
T ss_pred eEEEEEEecC
Confidence 5666655443
No 48
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.96 E-value=1.6e+02 Score=20.78 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=9.7
Q ss_pred CCceEEEehhhHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLV 278 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l 278 (339)
+...|+.++++-.++++++
T Consensus 11 nPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred CCCeEEeehHHHHHHHHHH
Confidence 5566666655444443333
No 49
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.91 E-value=1.1e+02 Score=28.26 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=4.6
Q ss_pred CceEEEehhhH
Q 036179 261 SRTWIAIGATA 271 (339)
Q Consensus 261 ~~~ii~i~v~i 271 (339)
+..+|.|.+++
T Consensus 226 ~G~VVlIslAi 236 (281)
T PF12768_consen 226 RGFVVLISLAI 236 (281)
T ss_pred ceEEEEEehHH
Confidence 34444444433
No 50
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=22.78 E-value=23 Score=36.31 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.9
Q ss_pred HHcCCCcCCccccCCCCC
Q 036179 322 ATQHFSDENKLGEGGFGP 339 (339)
Q Consensus 322 AT~nFse~N~IG~GGFG~ 339 (339)
..++|...++||+|+||.
T Consensus 130 ~~~~y~l~~~LG~G~FG~ 147 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGV 147 (566)
T ss_pred ccCCeEEeEEEeeCCCeE
Confidence 678899999999999994
No 51
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=22.21 E-value=32 Score=18.85 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=4.9
Q ss_pred CCcceEEEccc
Q 036179 86 GAKEAIVWYDQ 96 (339)
Q Consensus 86 ~~~~a~i~yd~ 96 (339)
..|+|++||-+
T Consensus 10 ~~kgarlwyvg 20 (24)
T PF04726_consen 10 KRKGARLWYVG 20 (24)
T ss_dssp SSSSS----SS
T ss_pred ccCceEEEEec
Confidence 46999999954
No 52
>PF15050 SCIMP: SCIMP protein
Probab=21.93 E-value=34 Score=27.28 Aligned_cols=10 Identities=0% Similarity=-0.363 Sum_probs=4.9
Q ss_pred ccHHHHHHHH
Q 036179 314 FYEDRSIQAT 323 (339)
Q Consensus 314 f~~~~l~~AT 323 (339)
-+|.-+.+++
T Consensus 94 atYS~vnk~r 103 (133)
T PF15050_consen 94 ATYSLVNKVR 103 (133)
T ss_pred chhhhhHhhc
Confidence 4455555443
No 53
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=20.53 E-value=1.3e+02 Score=21.96 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=9.6
Q ss_pred eEEEehhhHHHHHHHHH
Q 036179 263 TWIAIGATASSIIVLVL 279 (339)
Q Consensus 263 ~ii~i~v~i~~~l~~l~ 279 (339)
.++.++++.++++.+++
T Consensus 30 ~avaVviPl~L~LCiLv 46 (74)
T PF11857_consen 30 NAVAVVIPLVLLLCILV 46 (74)
T ss_pred eEEEEeHHHHHHHHHHH
Confidence 34566666665555554
No 54
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.09 E-value=62 Score=22.82 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=11.1
Q ss_pred EeEEEecccCCcc
Q 036179 65 VYGLYHCYFRLQS 77 (339)
Q Consensus 65 vygl~~CrgD~~~ 77 (339)
-|||..+|||++.
T Consensus 23 ~fGl~i~rgd~sT 35 (69)
T cd04894 23 EFGLNITRGDDST 35 (69)
T ss_pred HhceEEEeccccc
Confidence 4899999999875
No 55
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.07 E-value=54 Score=32.00 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=10.8
Q ss_pred CCceEEEehhhHHHHHHHHHHH
Q 036179 260 ESRTWIAIGATASSIIVLVLSS 281 (339)
Q Consensus 260 ~~~~ii~i~v~i~~~l~~l~~~ 281 (339)
...|.|++||.|+.++-+|.+|
T Consensus 369 IaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhh
Confidence 4445555555555555444333
Done!