Query 036179
Match_columns 339
No_of_seqs 296 out of 2507
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 4.2E-26 1.4E-30 179.9 10.5 103 115-221 6-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 1E-25 3.5E-30 177.9 10.5 107 111-221 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 7.8E-26 2.7E-30 178.4 8.9 95 11-106 1-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 5.6E-25 1.9E-29 173.6 8.5 94 12-106 2-108 (108)
5 2ks1_B Epidermal growth factor 88.6 0.16 5.4E-06 32.2 1.3 9 280-288 30-38 (44)
6 2l2t_A Receptor tyrosine-prote 87.3 0.19 6.4E-06 31.8 1.0 9 280-288 29-37 (44)
7 2k1k_A Ephrin type-A receptor 78.2 0.55 1.9E-05 28.7 0.5 17 263-279 12-28 (38)
8 4aw2_A Serine/threonine-protei 44.6 1.1 3.8E-05 42.7 -4.4 26 314-339 64-89 (437)
9 1gff_3 Bacteriophage G4 capsid 28.8 24 0.00081 18.8 1.2 12 85-96 10-21 (26)
10 2lx0_A Membrane fusion protein 21.9 34 0.0012 18.9 1.0 13 267-279 8-20 (32)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.93 E-value=4.2e-26 Score=179.92 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=92.2
Q ss_pred eEEEEeecccCChhHHHHHHHHHHHHHHHHhhcCCcCCCCcccccccccCCcceEEEEeeccCCCChhhHhhHHHHHHhh
Q 036179 115 TVYAWNIMNVTDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPGALAQ 194 (339)
Q Consensus 115 ~~~~~n~~~~~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~ 194 (339)
.+..||.++++.++.|+.+|+.||..|+.+++. +..+|+ ++..+..+.++||||+||++||++++|+.||+.++.+
T Consensus 6 v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~--s~~~~~--t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 3a2e_A 6 VSSACNTQKIPSGSPFNRNLRAMLADLRQNTAF--SGYDYK--TSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp EEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGG--TTSEEE--EEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eeeecCCCccCCCChHHHHHHHHHHHHHhhCcc--ccCCce--EeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456789889999999999999999999998864 345677 6665545668999999999999999999999999999
Q ss_pred ccccCCCCccEEEECcceeeeeecCCC
Q 036179 195 IPACCSGKQGGRVLTPSCNIRYERYPF 221 (339)
Q Consensus 195 i~~~c~~~~g~~v~~~~C~lRy~~~~F 221 (339)
|+++|++++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.93 E-value=1e-25 Score=177.86 Aligned_cols=107 Identities=26% Similarity=0.425 Sum_probs=94.2
Q ss_pred CCCCeEEEEeecccCChhHHHHHHHHHHHHHHHHhhcCCcCCCCcccccccccCCcceEEEEeeccCCCChhhHhhHHHH
Q 036179 111 ETAPTVYAWNIMNVTDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPG 190 (339)
Q Consensus 111 ~~~~~~~~~n~~~~~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~ 190 (339)
+..+.+..|+.++++.++.|+.++..||..|+.+|+. +..+|+ +++.+....++||||+||++||++++|+.||+.
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~--~~~~f~--~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~ 77 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAF--SGYDYK--TSRAGSGGAPTAYGRATCKQSISQSDCTACLSN 77 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGG--TTSEEE--EEECCCTTCCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhc--CCcccE--EEecCCCCCCcEEEEEecCCCCChHHHHHHHHH
Confidence 3456778898888888899999999999999999864 234688 776554334799999999999999999999999
Q ss_pred HHhhccccCCCCccEEEECcceeeeeecCCC
Q 036179 191 ALAQIPACCSGKQGGRVLTPSCNIRYERYPF 221 (339)
Q Consensus 191 a~~~i~~~c~~~~g~~v~~~~C~lRy~~~~F 221 (339)
++.+++++|++++||+||+++|+||||+++|
T Consensus 78 a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 78 LVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.92 E-value=7.8e-26 Score=178.38 Aligned_cols=95 Identities=22% Similarity=0.373 Sum_probs=84.0
Q ss_pred cCCCcccccCCCCCccCCCCchHHHHHHHHhhhhccCCCCC-CceeeecCC-CCCeEeEEEecccCCcc-----------
Q 036179 11 SDSNYVYHFCPPENNTAAGGLFMYKVGALFRGKLYNEAGRY-LYYNATEGV-DPNKVYGLYHCYFRLQS----------- 77 (339)
Q Consensus 11 ~~~~~~~~~C~~~~~~~~~s~y~~nl~~ll~~L~~~~~~~~-~f~~~~~G~-~~d~vygl~~CrgD~~~----------- 77 (339)
+++.++++.|++ +||+++++|+.||+.||++|+++++..+ +|++...|. ++|+||||+|||||+++
T Consensus 1 A~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 3a2e_A 1 ANTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 467789999975 8999999999999999999999986543 477777664 46999999999999987
Q ss_pred chHHhhCCCCcceEEEccceEEEEccccc
Q 036179 78 NTIVTNCTGAKEAIVWYDQCMVRFSNSSF 106 (339)
Q Consensus 78 ~~~~~~C~~~~~a~i~yd~C~lrysn~~f 106 (339)
+++.+.||.+++|+||||.|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 78889999999999999999999999987
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.91 E-value=5.6e-25 Score=173.57 Aligned_cols=94 Identities=23% Similarity=0.408 Sum_probs=84.9
Q ss_pred CCCcccccCCCCCccCCCCchHHHHHHHHhhhhccCCCC-CCceeeecCCCC-CeEeEEEecccCCcc-----------c
Q 036179 12 DSNYVYHFCPPENNTAAGGLFMYKVGALFRGKLYNEAGR-YLYYNATEGVDP-NKVYGLYHCYFRLQS-----------N 78 (339)
Q Consensus 12 ~~~~~~~~C~~~~~~~~~s~y~~nl~~ll~~L~~~~~~~-~~f~~~~~G~~~-d~vygl~~CrgD~~~-----------~ 78 (339)
+..++++.|++ +||+++++|+.||+.||++|+.+++.+ .+|+++++|.+| ++||||+|||||+++ +
T Consensus 2 ~t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 45678899997 899999999999999999999998643 359999889877 899999999999987 6
Q ss_pred hHHhhCCCCcceEEEccceEEEEccccc
Q 036179 79 TIVTNCTGAKEAIVWYDQCMVRFSNSSF 106 (339)
Q Consensus 79 ~~~~~C~~~~~a~i~yd~C~lrysn~~f 106 (339)
.+.+.||.+++|+||||.|+|||++++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 7888999999999999999999999987
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.58 E-value=0.16 Score=32.19 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.4
Q ss_pred HHHhhhhhh
Q 036179 280 SSFLLWRIK 288 (339)
Q Consensus 280 ~~~~~~rr~ 288 (339)
.+++++||+
T Consensus 30 ~~~~~~RRr 38 (44)
T 2ks1_B 30 GIGLFMRRR 38 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333333333
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.31 E-value=0.19 Score=31.81 Aligned_cols=9 Identities=22% Similarity=0.043 Sum_probs=3.4
Q ss_pred HHHhhhhhh
Q 036179 280 SSFLLWRIK 288 (339)
Q Consensus 280 ~~~~~~rr~ 288 (339)
.+++++|||
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333334433
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=78.22 E-value=0.55 Score=28.68 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=7.6
Q ss_pred eEEEehhhHHHHHHHHH
Q 036179 263 TWIAIGATASSIIVLVL 279 (339)
Q Consensus 263 ~ii~i~v~i~~~l~~l~ 279 (339)
.+.++++++++.++++.
T Consensus 12 aIAGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHH
Confidence 34445555444444333
No 8
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=44.57 E-value=1.1 Score=42.73 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCCC
Q 036179 314 FYEDRSIQATQHFSDENKLGEGGFGP 339 (339)
Q Consensus 314 f~~~~l~~AT~nFse~N~IG~GGFG~ 339 (339)
+.+.+++..+++|...++||+|+||+
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~ 89 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGE 89 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEE
Confidence 45667777789999999999999984
No 9
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=28.76 E-value=24 Score=18.81 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=9.3
Q ss_pred CCCcceEEEccc
Q 036179 85 TGAKEAIVWYDQ 96 (339)
Q Consensus 85 ~~~~~a~i~yd~ 96 (339)
..+|+|++||-+
T Consensus 10 ~r~kgarlwyvg 21 (26)
T 1gff_3 10 GKSKGARLWYVG 21 (26)
T ss_pred CCCCceEEEEec
Confidence 347999999954
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.94 E-value=34 Score=18.92 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.3
Q ss_pred ehhhHHHHHHHHH
Q 036179 267 IGATASSIIVLVL 279 (339)
Q Consensus 267 i~v~i~~~l~~l~ 279 (339)
++.++++++-++.
T Consensus 8 viaglvalltfla 20 (32)
T 2lx0_A 8 VIAGLVALLTFLA 20 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
Done!