Query 036179
Match_columns 339
No_of_seqs 296 out of 2507
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 17:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f32a_ d.62.1.1 (A:) Pepsin i 9.6 81 0.0059 22.9 2.4 20 81-100 62-81 (147)
2 d1weoa_ g.44.1.1 (A:) Cellulos 9.5 68 0.0049 21.3 1.8 30 180-219 42-71 (93)
3 d2cupa3 g.39.1.3 (A:8-34) Four 8.6 44 0.0032 16.8 0.4 8 91-98 20-27 (27)
4 d1x63a2 g.39.1.3 (A:45-76) Fou 8.0 49 0.0036 17.1 0.4 9 329-337 6-14 (32)
5 d1l8na2 d.92.2.2 (A:4-142) alp 7.9 23 0.0017 25.8 -1.4 12 94-105 2-13 (139)
6 d2baia1 g.87.1.1 (A:1-32) Poly 6.5 1.2E+02 0.0089 15.3 1.6 14 175-188 10-23 (32)
7 d3d4ub1 g.9.1.3 (B:1-37) Carbo 6.0 84 0.0061 16.7 0.7 15 81-97 13-27 (37)
8 d1cl4a_ g.40.1.1 (A:) Nucleoca 5.7 32 0.0023 18.4 -1.1 18 82-99 3-20 (32)
9 d1rutx2 g.39.1.3 (X:49-82) LIM 5.3 41 0.003 18.1 -0.9 10 66-75 20-29 (34)
10 d2o35a1 a.293.1.1 (A:2-80) Hyp 4.8 99 0.0072 20.0 0.6 7 184-190 41-47 (79)
No 1
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=9.57 E-value=81 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.8
Q ss_pred HhhCCCCcceEEEccceEEE
Q 036179 81 VTNCTGAKEAIVWYDQCMVR 100 (339)
Q Consensus 81 ~~~C~~~~~a~i~yd~C~lr 100 (339)
.+-|...-.-..++|+|||+
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
Confidence 56788866666777999997
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.51 E-value=68 Score=21.30 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=25.7
Q ss_pred ChhhHhhHHHHHHhhccccCCCCccEEEECcceeeeeecC
Q 036179 180 SKPDCNVCLPGALAQIPACCSGKQGGRVLTPSCNIRYERY 219 (339)
Q Consensus 180 s~~~C~~CL~~a~~~i~~~c~~~~g~~v~~~~C~lRy~~~ 219 (339)
.-.-|+.|.+--..+-.++|+ .|.-||...
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~ 71 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRL 71 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCC
T ss_pred CCccchHHHHHHHhccCccCc----------ccCChhhhh
Confidence 356799999999999999998 699999764
No 3
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=44 Score=16.84 Aligned_cols=8 Identities=38% Similarity=1.144 Sum_probs=5.7
Q ss_pred EEEccceE
Q 036179 91 IVWYDQCM 98 (339)
Q Consensus 91 ~i~yd~C~ 98 (339)
+.|.|.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 56777775
No 4
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.02 E-value=49 Score=17.10 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=6.8
Q ss_pred CCccccCCC
Q 036179 329 ENKLGEGGF 337 (339)
Q Consensus 329 ~N~IG~GGF 337 (339)
+..||.|.|
T Consensus 6 kq~igsgsf 14 (32)
T d1x63a2 6 KQVIGTGSF 14 (32)
T ss_dssp CCCCTTSCE
T ss_pred hhhcccccc
Confidence 567888876
No 5
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.94 E-value=23 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=10.1
Q ss_pred ccceEEEEcccc
Q 036179 94 YDQCMVRFSNSS 105 (339)
Q Consensus 94 yd~C~lrysn~~ 105 (339)
||.|+|||.-.+
T Consensus 2 y~~~WLrY~~~~ 13 (139)
T d1l8na2 2 YEPCWLRYERKD 13 (139)
T ss_dssp CCCTTCCCCCCC
T ss_pred CcchhcCCCccc
Confidence 788999998764
No 6
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=6.49 E-value=1.2e+02 Score=15.33 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=12.3
Q ss_pred ccCCCChhhHhhHH
Q 036179 175 CIPYLSKPDCNVCL 188 (339)
Q Consensus 175 C~~Dls~~~C~~CL 188 (339)
|...++-++|-.|-
T Consensus 10 cahsmtfeecpkcs 23 (32)
T d2baia1 10 CAHSMTFEECPKCS 23 (32)
T ss_dssp CSSSSCGGGHHHHH
T ss_pred HHhhccHhhCcchh
Confidence 88888999999985
No 7
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=5.97 E-value=84 Score=16.69 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.4
Q ss_pred HhhCCCCcceEEEccce
Q 036179 81 VTNCTGAKEAIVWYDQC 97 (339)
Q Consensus 81 ~~~C~~~~~a~i~yd~C 97 (339)
.+.||. ++++-|.+|
T Consensus 13 ~s~cp~--e~rlsy~gc 27 (37)
T d3d4ub1 13 QSDCPQ--EARLSYGGC 27 (37)
T ss_dssp GGGSCG--GGEECCSCC
T ss_pred cccCCH--hHeeccCCc
Confidence 467886 788888877
No 8
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=5.71 E-value=32 Score=18.42 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.9
Q ss_pred hhCCCCcceEEEccceEE
Q 036179 82 TNCTGAKEAIVWYDQCMV 99 (339)
Q Consensus 82 ~~C~~~~~a~i~yd~C~l 99 (339)
.+||.-+.+.-|-.+|.-
T Consensus 3 ~lCPrC~kG~HWa~~Crs 20 (32)
T d1cl4a_ 3 GLCPRCKRGKHWANECKS 20 (32)
T ss_dssp CSCSSCSSCSSCSTTCCC
T ss_pred ccCccccCcchHHHHhhh
Confidence 579988899999988863
No 9
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.27 E-value=41 Score=18.13 Aligned_cols=10 Identities=20% Similarity=0.374 Sum_probs=7.4
Q ss_pred eEEEecccCC
Q 036179 66 YGLYHCYFRL 75 (339)
Q Consensus 66 ygl~~CrgD~ 75 (339)
-||.+|+.|.
T Consensus 20 ~~mILCk~DY 29 (34)
T d1rutx2 20 SGMILCRNDY 29 (34)
T ss_dssp TTEEECHHHH
T ss_pred CCEEEEchhH
Confidence 3688888874
No 10
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=4.78 E-value=99 Score=19.98 Aligned_cols=7 Identities=43% Similarity=1.232 Sum_probs=0.0
Q ss_pred HhhHHHH
Q 036179 184 CNVCLPG 190 (339)
Q Consensus 184 C~~CL~~ 190 (339)
|+.||..
T Consensus 41 CRNCLsk 47 (79)
T d2o35a1 41 CRNCLSN 47 (79)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Done!