BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036180
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
           Upf0176 Protein Lpg2838 From Legionella Pneumophila At
           The Resolution 1.8a, Northeast Structural Genomics
           Consortium (Nesg) Target Lgr82
          Length = 265

 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 113/233 (48%), Gaps = 48/233 (20%)

Query: 93  SLVVISFYKFADFPDHANLRKPLKRLCEELRVSGGIILAPEGINGSICGTRESVERVLGF 152
            +++ SFYKF    D  +LR+P+     E+ + G IILA EG+NG   G RE       +
Sbjct: 14  DIIIASFYKFIPLNDFRSLREPILTKXHEIGIKGTIILAHEGVNGGFAGNREQXNVFYDY 73

Query: 153 IQSDEHLKGLRQIESPVSPEEEAIHHGHTSNSPLAAGEDAPFRWDHVRVKLKKEIVTLGM 212
           ++SD     L              H   T ++        PF  D  +VKL+KEIVT G+
Sbjct: 74  LRSDSRFADL--------------HFKETYDNK------NPF--DKAKVKLRKEIVTXGV 111

Query: 213 PTVAPIERVGKYVKPREWNALISDPDTVVIDVRNDYETRIGKFKGAVDPVTTAFREFPSW 272
             V P    G Y+ P EW+  I DP+ +++D RNDYE  +G FK A++P    FREFP +
Sbjct: 112 QKVDPSYNAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREFPDY 171

Query: 273 VEDQFQNDKTTHKESKVEITDEITDKEVGSPEKRMPKRVAMYCTGGIRCEKAS 325
           V+                    + DK+         K++A +CTGGIRCEK +
Sbjct: 172 VQRN------------------LIDKK--------DKKIAXFCTGGIRCEKTT 198


>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
           Hg-1
          Length = 317

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 17/115 (14%)

Query: 221 VGKYVKPREWNALISDPDTVVIDVRNDYETRIGKFKG---AVDPVTTAFREFPS------ 271
           VG +  P  W + I+D +T+   ++N   T + ++KG   A D V  AF E  S      
Sbjct: 87  VGHFYLP-SWVSSITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVF 145

Query: 272 -------WVEDQFQNDKTTHKESKVEITDEITDKEVGSPEKRMPKRVAMYCTGGI 319
                  ++   FQ  +     +K+ I D   D       + +  RV  +   G+
Sbjct: 146 LNVIGEDYIPIAFQTARAADPNAKLYINDYNLDSASYPKTQAIVNRVKQWRAAGV 200


>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
           Pseud Putida
 pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
 pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
           Pseudomonas Putida
          Length = 497

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 270 PSWVEDQFQNDKTTHKESKVEITDEITDKE--------VGSPEKRMPKRVAMYCTGGIRC 321
           PS++ +Q +     HK  KVE+ DE   K+        VG    + P+ + +   GG + 
Sbjct: 199 PSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKA 258

Query: 322 EK 323
           +K
Sbjct: 259 DK 260


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,325,105
Number of Sequences: 62578
Number of extensions: 427402
Number of successful extensions: 966
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)