BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036182
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
           Pyrocoocus Woesei Alpha-Amylase
 pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
           Hyperthermophilic Archaeon Pyrococcus Woesei
 pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
           From The Hyperthermophilic Archaeon Pyrococcus Woesei In
           Complex With Acarbose
          Length = 435

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 93  SGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138
           + +PA +YALQN    +S     ++TF   + T II+     Y  +
Sbjct: 258 NNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFI 303


>pdb|4E14|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
           With Phenylmethylsulfonyl Fluoride
 pdb|4E15|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
           With An Inhibitor
 pdb|4E15|B Chain B, Crystal Structure Of Kynurenine Formamidase Conjugated
           With An Inhibitor
          Length = 303

 Score = 25.8 bits (55), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 25/34 (73%)

Query: 49  EVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSS 82
           ++++  +V+T + +K+++ALIF+     L++LS+
Sbjct: 168 QILMRPNVITAQRSKMVWALIFLCGVYDLRELSN 201


>pdb|4E11|A Chain A, Crystal Structure Of Kynurenine Formamidase From
           Drosophila Melanogaster
          Length = 303

 Score = 25.8 bits (55), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 25/34 (73%)

Query: 49  EVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSS 82
           ++++  +V+T + +K+++ALIF+     L++LS+
Sbjct: 168 QILMRPNVITAQRSKMVWALIFLCGVYDLRELSN 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.133    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,910,893
Number of Sequences: 62578
Number of extensions: 86783
Number of successful extensions: 224
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 3
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)