Query 036182
Match_columns 138
No_of_seqs 107 out of 441
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 1.6E-29 3.5E-34 212.4 10.9 115 23-138 15-140 (345)
2 PF04142 Nuc_sug_transp: Nucle 99.6 1.1E-16 2.4E-21 129.2 4.7 53 86-138 13-65 (244)
3 TIGR00803 nst UDP-galactose tr 98.1 1.8E-06 4E-11 67.5 2.4 45 92-137 1-45 (222)
4 PF08449 UAA: UAA transporter 95.9 0.14 3E-06 42.0 10.7 82 51-138 31-112 (303)
5 PF03151 TPT: Triose-phosphate 95.8 0.23 5.1E-06 35.8 10.4 91 48-138 31-129 (153)
6 PF06027 DUF914: Eukaryotic pr 94.1 0.54 1.2E-05 40.1 9.6 49 90-138 79-127 (334)
7 KOG3912 Predicted integral mem 93.8 0.31 6.8E-06 41.5 7.5 89 49-138 39-134 (372)
8 PTZ00343 triose or hexose phos 93.6 1.6 3.5E-05 36.7 11.5 46 93-138 279-324 (350)
9 PF00892 EamA: EamA-like trans 93.5 0.65 1.4E-05 31.4 7.6 86 49-138 16-102 (126)
10 PRK15430 putative chlorampheni 92.8 3.4 7.5E-05 33.5 12.0 113 24-138 9-121 (296)
11 TIGR00817 tpt Tpt phosphate/ph 92.0 1.7 3.6E-05 35.2 9.2 115 24-138 146-269 (302)
12 PF13536 EmrE: Multidrug resis 89.4 2.8 6.2E-05 29.2 7.4 64 73-138 18-82 (113)
13 TIGR00817 tpt Tpt phosphate/ph 86.8 1.4 3E-05 35.7 4.9 50 89-138 64-113 (302)
14 KOG1441 Glucose-6-phosphate/ph 84.2 8.8 0.00019 32.6 8.7 35 93-127 238-272 (316)
15 PTZ00343 triose or hexose phos 82.7 24 0.00053 29.6 10.8 84 52-138 78-162 (350)
16 TIGR00688 rarD rarD protein. T 80.9 25 0.00054 27.6 11.3 113 24-138 3-118 (256)
17 PF06800 Sugar_transport: Suga 80.0 33 0.00071 28.6 10.4 110 19-138 134-243 (269)
18 TIGR00950 2A78 Carboxylate/Ami 75.8 34 0.00075 26.4 10.7 111 22-138 127-240 (260)
19 PLN00411 nodulin MtN21 family 60.0 1.1E+02 0.0024 26.1 10.5 48 90-137 78-125 (358)
20 TIGR00776 RhaT RhaT L-rhamnose 54.8 1.2E+02 0.0025 24.8 10.3 109 22-138 151-260 (290)
21 TIGR00950 2A78 Carboxylate/Ami 54.3 33 0.00071 26.5 5.1 47 92-138 48-95 (260)
22 KOG1581 UDP-galactose transpor 39.6 2E+02 0.0044 24.8 7.8 89 43-137 39-130 (327)
23 TIGR03340 phn_DUF6 phosphonate 35.7 95 0.0021 24.7 5.2 46 93-138 66-111 (281)
24 PF11628 TCR_zetazeta: T-cell 31.7 1.1E+02 0.0024 17.7 3.7 25 96-136 2-26 (33)
25 PRK10532 threonine and homoser 29.7 1.4E+02 0.0029 24.1 5.2 42 93-134 74-115 (293)
26 PRK11272 putative DMT superfam 29.2 3E+02 0.0065 22.0 11.3 105 25-136 10-116 (292)
27 COG2510 Predicted membrane pro 28.9 2.6E+02 0.0057 21.2 9.5 112 24-138 3-115 (140)
28 PRK10532 threonine and homoser 26.9 1.3E+02 0.0028 24.2 4.6 38 101-138 220-257 (293)
29 PRK15051 4-amino-4-deoxy-L-ara 24.7 2.5E+02 0.0055 19.7 5.3 42 97-138 44-85 (111)
30 PF08449 UAA: UAA transporter 21.7 4.3E+02 0.0094 21.3 12.0 114 24-137 155-272 (303)
31 TIGR00803 nst UDP-galactose tr 20.9 82 0.0018 24.2 2.3 46 92-137 154-199 (222)
32 COG0697 RhaT Permeases of the 20.6 3.9E+02 0.0084 20.3 12.2 44 92-135 72-115 (292)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=212.42 Aligned_cols=115 Identities=32% Similarity=0.394 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCC----CcccHhHHHHHHHHHHHHHHHHHHHHhC-C-hhhhhc----cc-eeccchh
Q 036182 23 RVLFYSLLLTLQYGVQPLISKRCIR----REVIVTTSVLTCELAKVIFALIFMAKEG-T-LKKLSS----QW-TLVGSLT 91 (138)
Q Consensus 23 ~~~~~L~lL~~q~~~~~iL~~r~~~----~~y~~st~Vl~~El~Kl~is~~~~~~~~-~-~~~~~~----~~-~~~~~~~ 91 (138)
+|+++++++++|++++++ +.||+| ++|.++|+|+++|++|+++|+.+.++|. . .++..+ ++ ..+++..
T Consensus 15 ~k~~~l~~~t~~~~~l~l-~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTL-LLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 899999999999999986 678875 4699999999999999999999886552 2 122222 22 2233566
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 92 ASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 92 ~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
+.+|||++|++|||++|++++|+||+||||+||+||+|||+|++++|
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L 140 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL 140 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.65 E-value=1.1e-16 Score=129.20 Aligned_cols=53 Identities=40% Similarity=0.612 Sum_probs=49.0
Q ss_pred eccchhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 86 LVGSLTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 86 ~~~~~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.+++..++++||++|++||||.|++++++||++||+++|+||++||+|++++|
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L 65 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLL 65 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33455689999999999999999999999999999999999999999999875
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.08 E-value=1.8e-06 Score=67.45 Aligned_cols=45 Identities=33% Similarity=0.267 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHh
Q 036182 92 ASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYII 137 (138)
Q Consensus 92 ~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~ll 137 (138)
++++||.+|+.||++.++++.++|+..+++. |.||++||++++.+
T Consensus 1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~ 45 (222)
T TIGR00803 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGS 45 (222)
T ss_pred CccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999 99999999988754
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.88 E-value=0.14 Score=41.97 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=63.1
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHH
Q 036182 51 IVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFT 130 (138)
Q Consensus 51 ~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltT 130 (138)
.+....+++.+.=.+++.......+ ..-..+..+.++.++++++.+.+.+.+.+++++|.+++++.-..|++.+
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~v 104 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFK------FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPV 104 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcc------ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHH
Confidence 3666777777766666666554333 1111223445789999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 036182 131 ALFTYIIL 138 (138)
Q Consensus 131 Alf~~llL 138 (138)
.++.++++
T Consensus 105 mi~~~l~~ 112 (303)
T PF08449_consen 105 MILGVLIL 112 (303)
T ss_pred HHHHHHhc
Confidence 99998764
No 5
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.77 E-value=0.23 Score=35.76 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=63.9
Q ss_pred CcccHhHHHHHHHHHHHHHHHHHH-HHhC-Chhhhhc-----cce-eccchhhhhhhHHHHHHHHHHHHHHHhcCChhhH
Q 036182 48 REVIVTTSVLTCELAKVIFALIFM-AKEG-TLKKLSS-----QWT-LVGSLTASGLPATIYALQNSLLQISYRNLDSLTF 119 (138)
Q Consensus 48 ~~y~~st~Vl~~El~Kl~is~~~~-~~~~-~~~~~~~-----~~~-~~~~~~~~avPA~lY~vQNnL~~val~~Ldaatf 119 (138)
.+.++-......-..=.++.+... ..|+ +..+... +++ ..+.+......+++..+.|...|..+++..|.|+
T Consensus 31 ~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~ 110 (153)
T PF03151_consen 31 KKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTY 110 (153)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHH
Confidence 456676666666666655555543 3333 2111111 121 2234456788999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhC
Q 036182 120 SMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 120 qVl~Q~KIltTAlf~~llL 138 (138)
+|+.+.|.+.+-++++++.
T Consensus 111 ~v~~~~K~~~~i~~s~~~f 129 (153)
T PF03151_consen 111 SVLGNVKRILVILLSVIFF 129 (153)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988753
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.13 E-value=0.54 Score=40.06 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=46.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 90 LTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 90 ~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
+.++.+.|++.+.-|.+...|+++-+.+..|++.|+-|+++.++++++|
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL 127 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFL 127 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999875
No 7
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.83 E-value=0.31 Score=41.51 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=62.7
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHHh-C-----Chhhhhcccee-ccchhhhhhhHHHHHHHHHHHHHHHhcCChhhHHh
Q 036182 49 EVIVTTSVLTCELAKVIFALIFMAKE-G-----TLKKLSSQWTL-VGSLTASGLPATIYALQNSLLQISYRNLDSLTFSM 121 (138)
Q Consensus 49 ~y~~st~Vl~~El~Kl~is~~~~~~~-~-----~~~~~~~~~~~-~~~~~~~avPA~lY~vQNnL~~val~~LdaatfqV 121 (138)
++.-+...|+.|+.=+..-..+-.+. | +.++....-+. -+.. .+--||++-..-..+.|+++-.-.|..||.
T Consensus 39 pvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~-lfl~Pal~Di~gsslm~vgL~lTsASsfQM 117 (372)
T KOG3912|consen 39 PVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV-LFLPPALCDIAGSSLMYVGLNLTSASSFQM 117 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc-eecChHHHHHhhhHHHHHHHHHhhHHHHHH
Confidence 56788899999976544333332221 1 22333332211 1122 234499999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhC
Q 036182 122 LNQTKIIFTALFTYIIL 138 (138)
Q Consensus 122 l~Q~KIltTAlf~~llL 138 (138)
+----|++|++|++.+|
T Consensus 118 lRGaviIFvglfst~~L 134 (372)
T KOG3912|consen 118 LRGAVIIFVGLFSTMFL 134 (372)
T ss_pred hhcchhhhhHHHHHHHH
Confidence 99999999999999875
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=93.61 E-value=1.6 Score=36.72 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 93 SGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 93 ~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
...-++.|.++|...|.++++++|.++++.+.+|=+.+.+++++++
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ 324 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIF 324 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHh
Confidence 3445789999999999999999999999999999999999998764
No 9
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.50 E-value=0.65 Score=31.45 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=60.3
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHH-HHHHHHHHHHHHhcCChhhHHhhhhhHH
Q 036182 49 EVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATI-YALQNSLLQISYRNLDSLTFSMLNQTKI 127 (138)
Q Consensus 49 ~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~l-Y~vQNnL~~val~~LdaatfqVl~Q~KI 127 (138)
++++...++...+.-.+ .+.+....+..+ ...++.+ .+....+-+++ ..+.+.+.+.++++.|++.-..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p 91 (126)
T PF00892_consen 16 KISPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPR-QWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSP 91 (126)
T ss_pred cCCHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChh-hhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 37888888888887765 343332211111 2222222 22346677777 4888999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 036182 128 IFTALFTYIIL 138 (138)
Q Consensus 128 ltTAlf~~llL 138 (138)
+.++++.++++
T Consensus 92 v~~~i~~~~~~ 102 (126)
T PF00892_consen 92 VFAAILGWLFL 102 (126)
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=92.77 E-value=3.4 Score=33.52 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHHHHHH
Q 036182 24 VLFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATIYALQ 103 (138)
Q Consensus 24 ~~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~lY~vQ 103 (138)
+.+..++-++-++...+.. |.. .++.+...++..=++=.++.+.+...+++.....+.++.++.......-++.+.++
T Consensus 9 g~~~~l~a~~~wg~~~~~~-k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
T PRK15430 9 GVLLALAAYFIWGIAPAYF-KLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGN 86 (296)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 4555555566677776644 543 34666666665555433222222222333222211122222322345667889999
Q ss_pred HHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 104 NSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 104 NnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
+.+.|.++++.+++.=.+++.+-=+.+++++++++
T Consensus 87 ~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l 121 (296)
T PRK15430 87 WLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFL 121 (296)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988764
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=91.98 E-value=1.7 Score=35.23 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCC-CcccHhHHHHHHHHHHHHHHHHHH-HHhCCh---hhhhc---cceeccchhhhhh
Q 036182 24 VLFYSLLLTLQYGVQPLISKRCIR-REVIVTTSVLTCELAKVIFALIFM-AKEGTL---KKLSS---QWTLVGSLTASGL 95 (138)
Q Consensus 24 ~~~~L~lL~~q~~~~~iL~~r~~~-~~y~~st~Vl~~El~Kl~is~~~~-~~~~~~---~~~~~---~~~~~~~~~~~av 95 (138)
+.+..++=++-++.+.++.+|..+ .++++.+....+=..=.+..+.+. ..|+.. .+... .+.....+....+
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence 544444445556666665555443 256655554444333222222222 233311 11111 0111111111334
Q ss_pred hHH-HHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 96 PAT-IYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 96 PA~-lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.++ .|...|.+.|.++++.+|.++++...+|-+.+++++++++
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~l 269 (302)
T TIGR00817 226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFF 269 (302)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhc
Confidence 544 7888888889999999999999999999999999887764
No 12
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=89.44 E-value=2.8 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=44.5
Q ss_pred HhCChhhhhccceeccchhhhhhhHHHH-HHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 73 KEGTLKKLSSQWTLVGSLTASGLPATIY-ALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~avPA~lY-~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
..++.++..+..+.++.. ....=+++. .+.+.+.+.|+++.++ .-.++.++-.+.+++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~ 82 (113)
T PF13536_consen 18 IRGRLRDLFRALRRKPWL-WLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFF 82 (113)
T ss_pred HHccHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555545443322 222224444 4889999999999995 777999999999999998864
No 13
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=86.76 E-value=1.4 Score=35.72 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=44.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 89 SLTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 89 ~~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.+.....-+++.++.+.+.+.++++.+++.++++..+-.+.|++++++++
T Consensus 64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~ 113 (302)
T TIGR00817 64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFL 113 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHh
Confidence 44467777888889999999999999999999999999999999998864
No 14
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=84.16 E-value=8.8 Score=32.58 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHH
Q 036182 93 SGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKI 127 (138)
Q Consensus 93 ~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KI 127 (138)
+..=++++..+|...|..+.+..|.||||.++.|-
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~ 272 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKR 272 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceE
Confidence 44445999999999999999999999999999984
No 15
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=82.69 E-value=24 Score=29.59 Aligned_cols=84 Identities=18% Similarity=0.074 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhCChhhhhccce-eccchhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHH
Q 036182 52 VTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWT-LVGSLTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFT 130 (138)
Q Consensus 52 ~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~-~~~~~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltT 130 (138)
+-+...+.=++-.+++..+. .-+- .+. .+++ .++.++.....++++...+...+.+++..+++.+|++.-+--+.|
T Consensus 78 P~~l~~~~~~~~~l~~~~~~-~~~~-~~~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft 154 (350)
T PTZ00343 78 PWTISSLQLFVGWLFALLYW-ATGF-RKI-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFT 154 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HhCC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHH
Confidence 67777666666655444332 2111 010 0111 122344677888889888888999999999999999999999999
Q ss_pred HHHHHHhC
Q 036182 131 ALFTYIIL 138 (138)
Q Consensus 131 Alf~~llL 138 (138)
++++++++
T Consensus 155 ~lls~~~l 162 (350)
T PTZ00343 155 ALLSILFL 162 (350)
T ss_pred HHHHHHHh
Confidence 99998864
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=80.91 E-value=25 Score=27.56 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccc---eeccchhhhhhhHHHH
Q 036182 24 VLFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQW---TLVGSLTASGLPATIY 100 (138)
Q Consensus 24 ~~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~---~~~~~~~~~avPA~lY 100 (138)
+++..++-++-++...+. .|+- .+.++...++.--+.=.++-+.+....++.+...+.+ +.++......+-+++.
T Consensus 3 g~~~~i~a~~~wg~~~~~-~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYY-SKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 445555566667777754 4553 2477777777665543222111111222211111111 1222233467888889
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 101 ALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 101 ~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.+.+.+.|.++++.+++.=.++.++==+.+++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l 118 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFL 118 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999888764
No 17
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=80.01 E-value=33 Score=28.59 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=75.0
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHH
Q 036182 19 KMSARVLFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPAT 98 (138)
Q Consensus 19 ~~~~~~~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~ 98 (138)
+...+.+..+++-++-+..++.+ -|+.+ .+. ...++-|.+=++++..++..-. .+..+.+..+ +-.++.+
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~-~~~~~--~~~-~~~~lPqaiGm~i~a~i~~~~~-----~~~~~~k~~~-~nil~G~ 203 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVI-PKAFH--VSG-WSAFLPQAIGMLIGAFIFNLFS-----KKPFFEKKSW-KNILTGL 203 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-HHhcC--CCh-hHhHHHHHHHHHHHHHHHhhcc-----cccccccchH-HhhHHHH
Confidence 33455677777778888777764 45432 233 3445577777766655542211 1112223333 5688999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 99 IYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 99 lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
++.+-|...+++.+++..++=-.++|+-++...+...++|
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il 243 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFIL 243 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEE
Confidence 9999999999999999999999999999998888766543
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=75.83 E-value=34 Score=26.40 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHH--HHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHH
Q 036182 22 ARVLFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTC--ELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATI 99 (138)
Q Consensus 22 ~~~~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~--El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~l 99 (138)
..+....++-++-++...+.. |...++++..+..+.. -++=.++........++... +..+ .+.....-+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~-k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-~~~~~~~~~~~ 200 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLY-KRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ----ALSL-QWGALLYLGLI 200 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cchH-HHHHHHHHHHH
Confidence 445666666666677776654 4333344433332221 11112222222222221111 1111 22123334443
Q ss_pred -HHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 100 -YALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 100 -Y~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
..+...+.+.++++.++.+-.++..+..+.+++++++++
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~ 240 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLIL 240 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 456777889999999999999999999999999998764
No 19
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=60.02 E-value=1.1e+02 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=41.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHh
Q 036182 90 LTASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYII 137 (138)
Q Consensus 90 ~~~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~ll 137 (138)
+..+++-+++-.+.|.+.|.++++.+|..=.++.++==+.|+++++++
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~ 125 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIF 125 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 345677777666677899999999999999999999999999998876
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=54.81 E-value=1.2e+02 Score=24.75 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHHHH
Q 036182 22 ARVLFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATIYA 101 (138)
Q Consensus 22 ~~~~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~lY~ 101 (138)
.++.+..++-.+-++.+.+.-++. +|++-+.++.+=.-=++.+.++...... . +.+..+ ......+.+++..
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~--~~~~~~-~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGHIL--A--KPLKKY-AILLNILPGLMWG 222 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHHhc--c--cchHHH-HHHHHHHHHHHHH
Confidence 345555555556666666543332 2444444433333223333333221100 0 112111 2223455888899
Q ss_pred HHHHHHHHHHh-cCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 102 LQNSLLQISYR-NLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 102 vQNnL~~val~-~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
++|.+.+.+.+ ++++++..+++|...+...+++++++
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l 260 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILIL 260 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999988764
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=54.25 E-value=33 Score=26.51 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=40.0
Q ss_pred hhhhhHH-HHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 92 ASGLPAT-IYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 92 ~~avPA~-lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.+.+-+. ...+.|.+.|.++++.+++.=.+..++.-+.|++++++++
T Consensus 48 ~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~ 95 (260)
T TIGR00950 48 RLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMG 95 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHc
Confidence 4556655 4688889999999999999999999999999999998764
No 22
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=39.58 E-value=2e+02 Score=24.78 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=62.5
Q ss_pred hhc--CCCcc-cHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHHHHHHHHHHHHHHhcCChhhH
Q 036182 43 KRC--IRREV-IVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATIYALQNSLLQISYRNLDSLTF 119 (138)
Q Consensus 43 ~r~--~~~~y-~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~lY~vQNnL~~val~~Ldaatf 119 (138)
++| ++.+| ++.-.++++-++=++++.+++.-.+ ++...++-+.+++--|+.=.+--.++|.|++++|=+|+
T Consensus 39 ~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k------~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq 112 (327)
T KOG1581|consen 39 RPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWK------KELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQ 112 (327)
T ss_pred cccCcccccccccHHHHHHHHHHHHHHHHHHHhccc------ccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHH
Confidence 456 34566 6667788888888888866652111 11222233346777777777788899999999999999
Q ss_pred HhhhhhHHHHHHHHHHHh
Q 036182 120 SMLNQTKIIFTALFTYII 137 (138)
Q Consensus 120 qVl~Q~KIltTAlf~~ll 137 (138)
-+.-=.|++-+.+...++
T Consensus 113 ~LaKscKmIPVmlmg~Lv 130 (327)
T KOG1581|consen 113 TLAKSCKMIPVMLMGTLV 130 (327)
T ss_pred HHHHHhhhhHHHHHHHHH
Confidence 888889999888776553
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=35.70 E-value=95 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 93 SGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 93 ~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
...=++.....+.+.+.++++.|++.-.++..+..+.+++++++++
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~ 111 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTL 111 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHH
Confidence 3444456888999999999999999999999999999999998763
No 24
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=31.74 E-value=1.1e+02 Score=17.73 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHH
Q 036182 96 PATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYI 136 (138)
Q Consensus 96 PA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~l 136 (138)
|-++|.+.-.|..++ |+.||+|++.
T Consensus 2 P~lCYiLDgiL~iYg----------------iiiT~L~~R~ 26 (33)
T PF11628_consen 2 PRLCYILDGILFIYG----------------IIITALYCRE 26 (33)
T ss_dssp -THHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred CceeeeHHHHHHHHH----------------HHHHHHHHHH
Confidence 567788887777665 5677877753
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=29.75 E-value=1.4e+02 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.044 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHH
Q 036182 93 SGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFT 134 (138)
Q Consensus 93 ~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~ 134 (138)
...-++++..-|.+.|.++++++++.-.++..+--+.++++.
T Consensus 74 ~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 445566788889999999999999988888877777776664
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=29.24 E-value=3e+02 Score=22.02 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHH-HHHH
Q 036182 25 LFYSLLLTLQYGVQPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATI-YALQ 103 (138)
Q Consensus 25 ~~~L~lL~~q~~~~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~l-Y~vQ 103 (138)
...+++..+-+++..+ ..|+.-++.++...+++-=+.=.++-+.+...++.. ...++.+....+-+.+ ..+.
T Consensus 10 ~~~~~~~~~iWg~~~~-~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 10 FGALFALYIIWGSTYL-VIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHP------LPTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHHHHHH
Confidence 4557777788888665 567655555665555443332222111222222211 1111222233444444 4577
Q ss_pred HHHHHHHH-hcCChhhHHhhhhhHHHHHHHHHHH
Q 036182 104 NSLLQISY-RNLDSLTFSMLNQTKIIFTALFTYI 136 (138)
Q Consensus 104 NnL~~val-~~LdaatfqVl~Q~KIltTAlf~~l 136 (138)
+.+.|.+. ++.+++.=.++..+-=+.+++++++
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~ 116 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL 116 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88889998 9999998889988888888888764
No 27
>COG2510 Predicted membrane protein [Function unknown]
Probab=28.92 E-value=2.6e+02 Score=21.24 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhh-hhhhhhhcCCCcccHhHHHHHHHHHHHHHHHHHHHHhCChhhhhccceeccchhhhhhhHHHHHH
Q 036182 24 VLFYSLLLTLQYGV-QPLISKRCIRREVIVTTSVLTCELAKVIFALIFMAKEGTLKKLSSQWTLVGSLTASGLPATIYAL 102 (138)
Q Consensus 24 ~~~~L~lL~~q~~~-~~iL~~r~~~~~y~~st~Vl~~El~Kl~is~~~~~~~~~~~~~~~~~~~~~~~~~~avPA~lY~v 102 (138)
++....+|..-..+ -++ .-|.+=++-|+..+-+.--++=.+.+..+....|+.... .+...+ ++..+.+-++.=.+
T Consensus 3 ~~~~~ALLsA~fa~L~~i-F~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k-~~lflilSGla~gl 79 (140)
T COG2510 3 AAIIYALLSALFAGLTPI-FAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPK-SWLFLILSGLAGGL 79 (140)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcc-eehhhhHHHHHHHH
Confidence 34555555544444 444 456655556666666666677666666666555543221 112222 33345555555566
Q ss_pred HHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 103 QNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 103 QNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
.-.+.|.|+++=+++---=+..+-...+++|++++|
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL 115 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFL 115 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHh
Confidence 666778899988887766677777888888888775
No 28
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=26.88 E-value=1.3e+02 Score=24.20 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 101 ALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 101 ~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
+++..+.+.++++.+|..-....-+.-+++++++++++
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~l 257 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFL 257 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHh
Confidence 35566778999999999999999999999999998874
No 29
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=24.70 E-value=2.5e+02 Score=19.65 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHhC
Q 036182 97 ATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 97 A~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~llL 138 (138)
-+.|.+-..+.-.+++++|...=..+.++-.+.+++.+++++
T Consensus 44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f 85 (111)
T PRK15051 44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLW 85 (111)
T ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999988877777799999999988763
No 30
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=21.70 E-value=4.3e+02 Score=21.29 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-cCCCcccHhHHHHHHHHHHHHHHHHHHHH--hCChhhhhccc-eeccchhhhhhhHHH
Q 036182 24 VLFYSLLLTLQYGVQPLISKR-CIRREVIVTTSVLTCELAKVIFALIFMAK--EGTLKKLSSQW-TLVGSLTASGLPATI 99 (138)
Q Consensus 24 ~~~~L~lL~~q~~~~~iL~~r-~~~~~y~~st~Vl~~El~Kl~is~~~~~~--~~~~~~~~~~~-~~~~~~~~~avPA~l 99 (138)
+++.+++=.+-.+.+.....| +.+.+-.+...++...+.-+......... .++..+..+-. +.++.+.....=++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 444443333333444433322 22333345677777888887766666544 44332222211 112222233344444
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHh
Q 036182 100 YALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYII 137 (138)
Q Consensus 100 Y~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~ll 137 (138)
-++-++..+...++.+|.+..+..-+|-+.|-++++++
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~ 272 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVII 272 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHh
Confidence 44444455677899999999999999999998888764
No 31
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=20.87 E-value=82 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.079 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHHh
Q 036182 92 ASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYII 137 (138)
Q Consensus 92 ~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~ll 137 (138)
....+.++-+++-.+....+++.|+.+......++++.++++++++
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~ 199 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL 199 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999999999999999765
No 32
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=20.57 E-value=3.9e+02 Score=20.28 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHH
Q 036182 92 ASGLPATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTY 135 (138)
Q Consensus 92 ~~avPA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~ 135 (138)
....-.+.+...+.+.|.++++++++...++..+--+.++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999986
Done!