Query 036182
Match_columns 138
No_of_seqs 107 out of 441
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:27:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 31.9 65 0.0022 22.7 4.5 44 95-138 35-79 (137)
2 2hac_A T-cell surface glycopro 28.1 82 0.0028 17.4 3.5 25 96-136 2-26 (33)
3 3b5d_A Multidrug transporter E 16.2 2.5E+02 0.0085 18.5 5.3 44 95-138 35-79 (110)
4 1cqt_I POU domain, class 2, as 11.6 42 0.0014 19.6 -0.3 8 3-10 23-30 (44)
5 2ls3_A High affinity copper up 8.1 1.2E+02 0.0042 16.0 0.0 16 96-111 5-20 (29)
6 1dtc_A Acetyl-delta-toxin; NMR 5.5 3.3E+02 0.011 14.0 1.6 10 58-67 9-18 (26)
7 1flo_A FLP recombinase; tyrosi 4.7 88 0.003 26.5 -1.6 27 98-124 181-207 (422)
8 2pma_A Uncharacterized protein 3.7 2.6E+02 0.009 20.0 0.4 15 4-18 20-34 (146)
9 2wx3_A MRNA-decapping enzyme 1 3.6 5.5E+02 0.019 15.3 1.8 17 94-110 16-32 (51)
10 2k98_A MSI-594; LPS, trnoe, an 3.4 3.2E+02 0.011 13.8 0.5 8 125-132 17-24 (26)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=31.93 E-value=65 Score=22.72 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCChh-hHHhhhhhHHHHHHHHHHHhC
Q 036182 95 LPATIYALQNSLLQISYRNLDSL-TFSMLNQTKIIFTALFTYIIL 138 (138)
Q Consensus 95 vPA~lY~vQNnL~~val~~Ldaa-tfqVl~Q~KIltTAlf~~llL 138 (138)
+=.+.|.+...+...+++++|+. .|-+..-+-.+.+++++++++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l 79 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF 79 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888999999999988 555557899999999988763
No 2
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=28.06 E-value=82 Score=17.42 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhcCChhhHHhhhhhHHHHHHHHHHH
Q 036182 96 PATIYALQNSLLQISYRNLDSLTFSMLNQTKIIFTALFTYI 136 (138)
Q Consensus 96 PA~lY~vQNnL~~val~~LdaatfqVl~Q~KIltTAlf~~l 136 (138)
|-++|.+.-.|..++ |+.||++++.
T Consensus 2 p~lCYiLDgiL~iYg----------------ii~T~Ly~R~ 26 (33)
T 2hac_A 2 SKLCYLLDGILFIYG----------------VILTALFLRV 26 (33)
T ss_dssp CTHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred CceEeehHHHHHHHH----------------HHHHHHHHHH
Confidence 556788777776655 5677777753
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=16.19 E-value=2.5e+02 Score=18.46 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhhHHhh-hhhHHHHHHHHHHHhC
Q 036182 95 LPATIYALQNSLLQISYRNLDSLTFSML-NQTKIIFTALFTYIIL 138 (138)
Q Consensus 95 vPA~lY~vQNnL~~val~~LdaatfqVl-~Q~KIltTAlf~~llL 138 (138)
.=.+.|.+.-.+...+++++|..+-.-. .-+-.+.+++++++++
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~ 79 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF 79 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHh
Confidence 3345677777888889999997765555 6788888888887764
No 4
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=11.64 E-value=42 Score=19.60 Aligned_cols=8 Identities=50% Similarity=0.509 Sum_probs=5.3
Q ss_pred ccccccCC
Q 036182 3 TVKTKVKT 10 (138)
Q Consensus 3 ~~~~~~~~ 10 (138)
.||||||.
T Consensus 23 RVkePVKE 30 (44)
T 1cqt_I 23 RVKEPVKE 30 (44)
T ss_dssp CCSSCHHH
T ss_pred ecccHHHH
Confidence 46777763
No 5
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.09 E-value=1.2e+02 Score=15.96 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 036182 96 PATIYALQNSLLQISY 111 (138)
Q Consensus 96 PA~lY~vQNnL~~val 111 (138)
=|++|.+|.-+.|.-.
T Consensus 5 ra~l~~~q~~~~Y~LM 20 (29)
T 2ls3_A 5 QTVLHIIQVVISYFLM 20 (29)
Confidence 4678888888887654
No 6
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=5.52 E-value=3.3e+02 Score=14.01 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 036182 58 TCELAKVIFA 67 (138)
Q Consensus 58 ~~El~Kl~is 67 (138)
..|++|+++-
T Consensus 9 IgdfvKlI~~ 18 (26)
T 1dtc_A 9 IGDLVKWIID 18 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4788888653
No 7
>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} SCOP: a.60.9.1 d.163.1.1 PDB: 1m6x_A* 1p4e_A*
Probab=4.68 E-value=88 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHhhhh
Q 036182 98 TIYALQNSLLQISYRNLDSLTFSMLNQ 124 (138)
Q Consensus 98 ~lY~vQNnL~~val~~LdaatfqVl~Q 124 (138)
++-++-|.+-+==+.|+||.||++..+
T Consensus 181 ll~tf~NCcR~sDLKN~DP~TFeiv~N 207 (422)
T 1flo_A 181 FLATFINCGRFSDIKNVDPKSFKLVQN 207 (422)
T ss_dssp HHHHHHHTCCHHHHHTCEEEEEEEECC
T ss_pred HHHHHHhhhchhhcccCCccceEeecc
Confidence 345677888899999999999998654
No 8
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=3.70 E-value=2.6e+02 Score=20.01 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=10.0
Q ss_pred cccccCCCCCccccc
Q 036182 4 VKTKVKTGPAQASMQ 18 (138)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (138)
+|-++|||+.+++..
T Consensus 20 ~~AKiDTGA~TSSLh 34 (146)
T 2pma_A 20 LSAKLDTGAKSASLH 34 (146)
T ss_dssp EEEEECTTCSSEEEE
T ss_pred EEEEecCCcCcceec
Confidence 566777777776543
No 9
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=3.61 E-value=5.5e+02 Score=15.30 Aligned_cols=17 Identities=18% Similarity=0.003 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 036182 94 GLPATIYALQNSLLQIS 110 (138)
Q Consensus 94 avPA~lY~vQNnL~~va 110 (138)
..=|++|.+||-=.|+.
T Consensus 16 l~qaLihLIqnD~~Fl~ 32 (51)
T 2wx3_A 16 LQDTLIHLIKNDSSFLS 32 (51)
T ss_dssp HHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCHHHHH
Confidence 45688999999877764
No 10
>2k98_A MSI-594; LPS, trnoe, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=3.44 E-value=3.2e+02 Score=13.85 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=4.2
Q ss_pred hHHHHHHH
Q 036182 125 TKIIFTAL 132 (138)
Q Consensus 125 ~KIltTAl 132 (138)
+|.++|++
T Consensus 17 lkvlttgl 24 (26)
T 2k98_A 17 LKVLTTGL 24 (26)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcc
Confidence 45555553
Done!