Query 036182
Match_columns 138
No_of_seqs 107 out of 441
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036182.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036182hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p4ea2 d.163.1.1 (A:136-422) 8.5 30 0.0022 25.9 -0.4 27 98-124 47-73 (287)
2 d1y6ia1 a.118.1.22 (A:1-82) Mg 6.4 87 0.0063 19.1 1.1 19 116-134 56-74 (82)
3 d1z3xa1 a.118.1.22 (A:1-87) GU 5.3 94 0.0069 19.1 0.8 21 114-134 59-79 (87)
4 d1gnwa1 a.45.1.1 (A:86-211) Cl 4.1 3E+02 0.022 16.5 2.8 26 100-125 11-36 (126)
5 d2pmaa1 b.50.1.3 (A:26-166) Un 4.0 1.1E+02 0.008 19.8 0.4 15 3-17 16-30 (141)
6 d1go4a_ d.135.1.1 (A:) The spi 3.0 4.9E+02 0.036 17.0 3.2 23 52-74 7-29 (196)
7 d1yova1 c.111.1.2 (A:6-534) Am 2.9 4.1E+02 0.03 20.4 3.0 22 44-65 479-504 (529)
8 d1hmca_ a.26.1.2 (A:) Macropha 2.5 4E+02 0.029 17.6 2.1 20 43-62 62-81 (148)
9 d2huja1 a.24.26.1 (A:1-120) Hy 2.3 4.6E+02 0.034 16.4 2.2 17 93-109 98-114 (120)
10 d2etsa1 a.24.26.1 (A:1-110) Hy 2.2 4E+02 0.029 16.5 1.6 15 93-107 93-107 (110)
No 1
>d1p4ea2 d.163.1.1 (A:136-422) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.53 E-value=30 Score=25.89 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHhhhh
Q 036182 98 TIYALQNSLLQISYRNLDSLTFSMLNQ 124 (138)
Q Consensus 98 ~lY~vQNnL~~val~~LdaatfqVl~Q 124 (138)
++-++-|.+-+=-+.|+||.||++..+
T Consensus 47 ll~tf~NCcR~sDLkN~DP~tFeiv~n 73 (287)
T d1p4ea2 47 FLATFINCGRFSDIKNVDPKSFKLVQN 73 (287)
T ss_dssp HHHHHHHTCCHHHHHTBCGGGCEEEEE
T ss_pred HHHHHHhhhchhhcccCCccceeeecc
Confidence 345678999999999999999988643
No 2
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=6.37 E-value=87 Score=19.07 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=14.8
Q ss_pred hhhHHhhhhhHHHHHHHHH
Q 036182 116 SLTFSMLNQTKIIFTALFT 134 (138)
Q Consensus 116 aatfqVl~Q~KIltTAlf~ 134 (138)
.-.||++||.+-..|.-|.
T Consensus 56 GkaYq~L~~~~~~~~~eFL 74 (82)
T d1y6ia1 56 GNVYQTLRNLEQETITTQL 74 (82)
T ss_dssp HHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHhcCcHHHHHHH
Confidence 4579999999888777664
No 3
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.28 E-value=94 Score=19.12 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=16.1
Q ss_pred CChhhHHhhhhhHHHHHHHHH
Q 036182 114 LDSLTFSMLNQTKIIFTALFT 134 (138)
Q Consensus 114 LdaatfqVl~Q~KIltTAlf~ 134 (138)
.+.-.||++||.+-..+.-|.
T Consensus 59 V~GkaYq~L~~~~~~~~~eFL 79 (87)
T d1z3xa1 59 IRGQAYRLLFHSPEASVQAFL 79 (87)
T ss_dssp HHHHHHHHHHTCCCHHHHHHH
T ss_pred ehhHHHHHHHhcCcHHHHHHH
Confidence 455689999999887776664
No 4
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.09 E-value=3e+02 Score=16.45 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhh
Q 036182 100 YALQNSLLQISYRNLDSLTFSMLNQT 125 (138)
Q Consensus 100 Y~vQNnL~~val~~LdaatfqVl~Q~ 125 (138)
|+++|--.-+-..+.||.+.++.++.
T Consensus 11 ~a~~~~~m~~e~~~f~p~~~~l~~~~ 36 (126)
T d1gnwa1 11 YAIMAIGMQVEDHQFDPVASKLAFEQ 36 (126)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56666666777777777777776654
No 5
>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085 {Legionella pneumophila [TaxId: 446]}
Probab=4.03 E-value=1.1e+02 Score=19.82 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=10.1
Q ss_pred ccccccCCCCCcccc
Q 036182 3 TVKTKVKTGPAQASM 17 (138)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (138)
.++-|+|||+.+++.
T Consensus 16 ~i~AKiDTGA~tSsl 30 (141)
T d2pmaa1 16 TLSAKLDTGAKSASL 30 (141)
T ss_dssp EEEEEECTTCSSEEE
T ss_pred eEEEEEcCCCCccee
Confidence 356788888766543
No 6
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.95 E-value=4.9e+02 Score=17.04 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Q 036182 52 VTTSVLTCELAKVIFALIFMAKE 74 (138)
Q Consensus 52 ~st~Vl~~El~Kl~is~~~~~~~ 74 (138)
..++.++.|++...+..+++.++
T Consensus 7 k~S~~~v~e~l~~ai~~ILY~Rg 29 (196)
T d1go4a_ 7 RGSAEIVAEFFSFGINSILYQRG 29 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 46788999999999999998653
No 7
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.87 E-value=4.1e+02 Score=20.42 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=13.2
Q ss_pred hcCCCcccHhHH----HHHHHHHHHH
Q 036182 44 RCIRREVIVTTS----VLTCELAKVI 65 (138)
Q Consensus 44 r~~~~~y~~st~----Vl~~El~Kl~ 65 (138)
|+++....+.++ +..+|++|++
T Consensus 479 r~~~~el~~vaA~~GGiaaQEviK~i 504 (529)
T d1yova1 479 RYGAAEPHTIAAFLGGAAAQEVIKII 504 (529)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHHHHHHHHHHHHHHH
Confidence 455544444443 4578999984
No 8
>d1hmca_ a.26.1.2 (A:) Macrophage colony-stimulating factor (M-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49 E-value=4e+02 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=18.0
Q ss_pred hhcCCCcccHhHHHHHHHHH
Q 036182 43 KRCIRREVIVTTSVLTCELA 62 (138)
Q Consensus 43 ~r~~~~~y~~st~Vl~~El~ 62 (138)
+||.++..+...++.+.|+.
T Consensus 62 fRy~~~s~N~~~v~~Lq~ls 81 (148)
T d1hmca_ 62 MRFRDNTPNAIAIVQLQELS 81 (148)
T ss_pred hccccCCCcHHHHHHHHHHH
Confidence 69999999999999999973
No 9
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=2.29 E-value=4.6e+02 Score=16.43 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHH
Q 036182 93 SGLPATIYALQNSLLQI 109 (138)
Q Consensus 93 ~avPA~lY~vQNnL~~v 109 (138)
=-+=|+.|+++|.+..+
T Consensus 98 e~~kSV~YtL~~i~~~i 114 (120)
T d2huja1 98 DHYQSTKYTLTRVRDFL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678999999988654
No 10
>d2etsa1 a.24.26.1 (A:1-110) Hypothetical protein MW1337 {Staphylococcus aureus [TaxId: 1280]}
Probab=2.18 E-value=4e+02 Score=16.51 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHH
Q 036182 93 SGLPATIYALQNSLL 107 (138)
Q Consensus 93 ~avPA~lY~vQNnL~ 107 (138)
=-+=|+.|.++|.+.
T Consensus 93 e~~kSv~YtL~~i~d 107 (110)
T d2etsa1 93 EKLKSVQYDLQNILD 107 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 345688999999874
Done!