BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036185
(1057 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 125 bits (315), Expect = 1e-28, Method: Composition-based stats.
Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 15/290 (5%)
Query: 764 KSPFKAMTEAVASLIEQ---KGLSARLLEQLPSRWERLGDIVVLPVTSFKDPVWDSIGGE 820
+ P T+ + I + K L L++ LP RW R+GD+++LP+ +P I E
Sbjct: 19 QGPLHMRTQGIKPRIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIA-E 77
Query: 821 LWPAVAKILNTSHLARQGRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSW 880
++ A++L + R+G + TR E+L G + H ENGI Y D K MFS
Sbjct: 78 VY---AEVLGVKTVLRKGHIHGE-TRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSP 133
Query: 881 GNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQ 940
N+ E++RMA++ DE++VD+FAGIG+ LP V KA+++ A E +P + L N+
Sbjct: 134 ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVI-AIEKDPYTFKFLVENIH 192
Query: 941 ANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000
N V D DNR + +A+R+ +G + + ++ ++ +G +H H V
Sbjct: 193 LNKVEDRMSAYNMDNRDFPGENIADRILMGYV-VRTHEFIPKALSIAKDGAIIHYHNTVP 251
Query: 1001 DSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADV 1050
EKL ++ I + G+ E E ++K YAP + H+V D+
Sbjct: 252 ---EKLMPREPFETFKRITKEYGYDVEKLNEL--KIKRYAPGVWHVVLDL 296
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 116 bits (290), Expect = 8e-26, Method: Composition-based stats.
Identities = 85/273 (31%), Positives = 137/273 (50%), Gaps = 12/273 (4%)
Query: 778 IEQKGLSARLLEQLPSRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQ 837
I K L L++ LP RW R+GD+++LP+ +P I E++ A++L + R+
Sbjct: 13 ILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIA-EVY---AEVLGVKTVLRK 68
Query: 838 GRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDE 897
G + TR E+L G + H ENGI Y D K FS N+ E++R A++ DE
Sbjct: 69 GHIHGE-TRKPDYELLYGSDTVTVHVENGIKYKLDVAKIXFSPANVKERVRXAKVAKPDE 127
Query: 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF 957
++VD FAGIG+ LP V KA+++ A E +P + L N+ N V D DNR
Sbjct: 128 LVVDXFAGIGHLSLPIAVYGKAKVI-AIEKDPYTFKFLVENIHLNKVEDRXSAYNXDNRD 186
Query: 958 TAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYE 1017
+ +A+R+ G + + ++ ++ +G +H H V EKL ++
Sbjct: 187 FPGENIADRILXGYV-VRTHEFIPKALSIAKDGAIIHYHNTVP---EKLXPREPFETFKR 242
Query: 1018 IARSEGHRWEVTIEHIERVKWYAPHIRHLVADV 1050
I + G+ E E ++K YAP + H+V D+
Sbjct: 243 ITKEYGYDVEKLNEL--KIKRYAPGVWHVVLDL 273
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 113 bits (282), Expect = 6e-25, Method: Composition-based stats.
Identities = 77/262 (29%), Positives = 133/262 (50%), Gaps = 16/262 (6%)
Query: 794 RWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQGRVAPTGTRDSALEIL 853
+++++GD+V++ +D + + + A+ +L T+ + + R ++IL
Sbjct: 27 KYQKIGDVVIVKKELSEDEIREIVKRTKCKAI--LLYTTQITGEFRTP-------HVKIL 77
Query: 854 VGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPF 913
G H E G L+ D K M+S GN+ E+ RMA + ++EV+VD+FAGIGYF +P
Sbjct: 78 YGKETETIHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPL 137
Query: 914 LVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973
+K +LVYA E NP A L N++ N +++ I + DNR K VA+RV +G +
Sbjct: 138 AKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVELKDVADRVIMGYVH 196
Query: 974 TSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHI 1033
+ + L+ G +H H V EK+ E + + A G++ + +
Sbjct: 197 KTHKFLDKTFEFLKDR-GVIHYHETVA---EKIMYERPIERLKFYAEKNGYK--LIDYEV 250
Query: 1034 ERVKWYAPHIRHLVADVGCRQI 1055
++K YAP + H+V D +I
Sbjct: 251 RKIKKYAPGVWHVVVDAKFERI 272
>pdb|2DRV|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2DRV|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2IT2|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT2|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
Length = 200
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 13/180 (7%)
Query: 62 KGTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHPVNKPK-GGTWLFITHDPADVDSV 120
KG +D IIPLL INS NY+TTSSCSGRIS+ P K WL H + V
Sbjct: 28 KGEVDEDIIPLLKKINSIENYFTTSSCSGRISVXEXPHFGDKVNAKWLGKWHREVSLYEV 87
Query: 121 LSLLFFXXXXXXXXXXRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSV- 179
L + QL F I+ V + +E A LV++AVS G + S + S+
Sbjct: 88 LEAI--------KKHRSGQLWFLVRSPILHVGAKTLEDAVKLVNLAVSCGFKYSNIKSIS 139
Query: 180 KKRVIVGIRCSLRLEVPLGESGNVLVSQDYVRFLVGIAN---QKLEANSRRIDGFLQAFN 236
K++IV IR + R +V LGE+G + V ++Y+ +V IAN ++ + +R++ + A N
Sbjct: 140 NKKLIVEIRSTERXDVLLGENGEIFVGEEYLNKIVEIANDQXRRFKEKLKRLESKINALN 199
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 795 WERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQGRVAPTGTRDSALEILV 854
++ +GD+V+L ++ D V + I E+ K++ + R+ R LE L
Sbjct: 97 YDVVGDLVILQIS---DEVDEKIRKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLA 153
Query: 855 GDNGWVK-HCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPF 913
G+N + H ENG D K FS E+ R+ + ++V+VD+FAG+G PF
Sbjct: 154 GENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVG----PF 209
Query: 914 LVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972
+ K A+ +YA + NP A+E LK N++ N + I + D R KG NRV + L
Sbjct: 210 SIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKG--NRVIMNL- 266
Query: 973 PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKL 1006
P + ++ + EGG +H + KD ++ +
Sbjct: 267 PKFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAI 300
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 795 WERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQGRVAPTGTRDSALEILV 854
++ +GD+V+L ++ D V + I E+ K++ + R+ R LE L
Sbjct: 97 YDVVGDLVILQIS---DEVDEKIRKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLA 153
Query: 855 GDNGWVK-HCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPF 913
G+N + H ENG D K FS E+ R+ + ++V+VD+FAG+G PF
Sbjct: 154 GENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVG----PF 209
Query: 914 LVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972
+ K A+ +YA + NP A+E L N++ N + I + D R KG NRV + L
Sbjct: 210 SIACKNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPILSDVREVDVKG--NRVIMNL- 266
Query: 973 PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKL 1006
P + ++ + EGG +H + KD ++ +
Sbjct: 267 PKFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAI 300
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 12/214 (5%)
Query: 795 WERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQGRVAPTGTRDSALEILV 854
++ +GD+V+L ++ D V + I E+ K++ + R+ R LE L
Sbjct: 97 YDVVGDLVILQIS---DEVDEKIRKEIGELAYKLIPCKGVFRRKSEVKGEFRVRELEHLA 153
Query: 855 GDNGWVK-HCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPF 913
G+N + H ENG D K FS E+ R+ + ++V+VD FAG+G PF
Sbjct: 154 GENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIXKKVSLNDVVVDXFAGVG----PF 209
Query: 914 LVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972
+ K A+ +YA + NP A+E LK N++ N + I + D R KG NRV L
Sbjct: 210 SIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKG--NRVIXNL- 266
Query: 973 PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKL 1006
P + ++ + EGG +H + KD ++ +
Sbjct: 267 PKFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAI 300
>pdb|2QG3|A Chain A, Crystal Structure Of A Tyw3 Methyltransferase-Like Protein
(Af_2059) From Archaeoglobus Fulgidus Dsm 4304 At 1.95 A
Resolution
pdb|2QG3|B Chain B, Crystal Structure Of A Tyw3 Methyltransferase-Like Protein
(Af_2059) From Archaeoglobus Fulgidus Dsm 4304 At 1.95 A
Resolution
Length = 208
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 65 LDTPIIPLLNAINSHPNYYTTSSCSGRISI--FSHPVNKPKG---GTWLFITHDPADVDS 119
+D I+ LL+ INS ++ T SSCSGRI++ P +K G W H+ +V
Sbjct: 35 VDFDIVELLDLINSFDDFVTLSSCSGRIAVVDLEKPGDKASSLFLGKW----HEGVEVSE 90
Query: 120 VLSLLFFXXXXXXXXXXRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSV 179
V + + ++ P I+ V CR++ +A+ L + A ++G R SGV S+
Sbjct: 91 V--------AEAALRSRKVAWLIQYPP-IIHVACRNIGAAKLLXNAANTAGFRRSGVISL 141
Query: 180 KKRVIVGIRCSLRLEVPLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNFMV 239
V V I R+E+P+ E G LV Y+ ++V AN+KL ++ +A
Sbjct: 142 SNYV-VEIASLERIELPVAEKGLXLVDDAYLSYVVRWANEKLLKGKEKLGRLQEALE--- 197
Query: 240 GSSVSSKDEHQNCGD 254
S + E+ C D
Sbjct: 198 ----SLQRENAYCSD 208
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 9/171 (5%)
Query: 293 CILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI 352
C+ G D +I V G + A + + DP+ K + P GH
Sbjct: 101 CLFGLGEVDDKIYVVAG-KDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNVISH 157
Query: 353 GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGG 412
++ +GG+ D + V+++N K W L + PR A+ KI + GG
Sbjct: 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHKGKIVIAGG 214
Query: 413 LNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGY 463
+ D + +S+ D T +W+ + E P R S S+++ LY GG+
Sbjct: 215 VTEDGLSASVEAFDLKTNKWE---VMTEFPQERSSISLVSLAGSLYAIGGF 262
>pdb|1TLJ|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Sso0622 From Sulfolobus Solfataricus
pdb|1TLJ|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
Sso0622 From Sulfolobus Solfataricus
Length = 213
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 63 GTLDTPIIPLLNAINSHPN-YYTTSSCSGRISIF--SHPVNKPKGGTWLFITH---DPAD 116
G LD I+ L A + N YT SSCSGRI+I P ++ K T +F H D
Sbjct: 24 GYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEMPWDR-KNSTIIFKNHLRITEQD 82
Query: 117 VDSVLSLLFFXXXXXXXXXXRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGV 176
++ VLS +L + I+ + +++E+ ++ IA +G + SG+
Sbjct: 83 LEDVLS-----------KNQVRRLWLIVQGPIIHIYAKNIETGWDILKIAREAGFKHSGI 131
Query: 177 TSVKKR-VIVGIRCSLRLEVPLGESGNVLVSQDYVRFLVGIANQKLEANSRRID 229
+ ++ V+V +R +R+ L ES V +D ++ LV + N+ L ++++
Sbjct: 132 LATNQKGVLVELRTGIRMVHLLRESNTERVDKDKIKTLVNVCNEVLARGKQKMN 185
>pdb|2DVK|A Chain A, Crystal Structure Of Hypothetical Protein From Aeropyrum
Pernix
Length = 188
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 63 GTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHPVNKPKGGTWL-FITHDP---ADVD 118
G LD +L IN +TSSC+GRI++ + + G + + TH P ++V+
Sbjct: 15 GYLDPGAEKVLARINRPSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVE 74
Query: 119 SVLSLLFFXXXXXXXXXXRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTS 178
VL F L + I+ + + A++L+ A +G + SGV S
Sbjct: 75 RVLRRGF------------TNLWLKVTGPILHLRVEGWQCAKSLLEAARRNGFKHSGVIS 122
Query: 179 VKK--RVIVGIRCSLRLEVPLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFN 236
+ + R+++ I S + VPL G +V D + L+ AN L + +D F +
Sbjct: 123 IAEDSRLVIEIMSSQSMSVPLVMEGARIVGDDALDMLIEKANTILVESRIGLDTFSREVE 182
Query: 237 FMV 239
+V
Sbjct: 183 ELV 185
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 341 PSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398
P R+ HT + I + + +IGGR P LSD W+F+M +W++++ S+ R RH
Sbjct: 437 PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRH 493
Query: 399 AAAVI-GSKIYVFGGL 413
+A + + + GG+
Sbjct: 494 SACSLPDGNVLILGGV 509
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 342 SPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAA 401
+ R G +L+ DH++++GG D LS V +N+ WT + S+ PR A
Sbjct: 195 TKRSGAGVALLNDHIYVVGG-FDGTAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGAT 250
Query: 402 VIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPC 443
V+ ++Y G + +++ SS+ D W+ + G C
Sbjct: 251 VLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRC 292
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 354 DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGL 413
D +++IGG D + LS V + + + + R A +G IYV GG
Sbjct: 63 DRIYVIGGY-DGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGF 121
Query: 414 NNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLY 473
+ +S+ D + QW L G+ AR ++ +Y GGY+G L +
Sbjct: 122 DGSRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVE 178
Query: 474 TFDVHACLW 482
+D H W
Sbjct: 179 KYDPHTGHW 187
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 14/174 (8%)
Query: 304 ILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGS-PSPRLGHTSSLIGDHMFIIGGR 362
I V GGF G RH + DP I G + R G + ++ +GG
Sbjct: 115 IYVSGGFDGSRRHT---SMERYDP---NIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168
Query: 363 ADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSL 422
D LNIL+ V ++ WT + + R A++ IYV GG + SS+
Sbjct: 169 -DGLNILNSVEKYDPHTGHWTNVTPMAT---KRSGAGVALLNDHIYVVGGFDGTAHLSSV 224
Query: 423 HVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFD 476
+ T W + C + + RLY GY+G L + +D
Sbjct: 225 EAYNIRTDSWTTVTSMTTPRCYVGATVLRG---RLYAIAGYDGNSLLSSIECYD 275
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 356 MFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN 415
+ ++GG + + V ++ +W+ L S+ + R A+ + +IYV GG +
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDG 73
Query: 416 DTIFSSLHVL----DTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGD 471
+ SS+ L D D + + +N R G +Y+ GG++G +
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMN----VRRGLAGATTLGDMIYVSGGFDGSRRHTS 129
Query: 472 LYTFDVHACLW 482
+ +D + W
Sbjct: 130 MERYDPNIDQW 140
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 339 GSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398
G P+PR + ++ GG ++ N S +++F ++ S+ R H
Sbjct: 87 GPPTPRDSLAACAAEGKIYTSGG-SEVGN--SALYLFECYDTRTESWHTKPSMLTQRCSH 143
Query: 399 AAAVIGSKIYVFGG-LNNDT---IFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYG 454
IYV GG L N+ + +S V D T W EL E AR +H ++
Sbjct: 144 GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE---ARKNHGLVFVK 200
Query: 455 SRLYMFGGYNGEKALGDLYTFDVHACLWK 483
+++ GG NG L ++ +D+ WK
Sbjct: 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 295 LGNSINDSQILVFGGFGGMGRHA-------RRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G + D I GG G H+ R++ L+ P+ + R+G
Sbjct: 109 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPML------------TRRIGV 156
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKI 407
+++ ++ +GG D N L+ + +++W ++ ++ R V+ + I
Sbjct: 157 GVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMITPMNTI---RSGAGVCVLHNCI 212
Query: 408 YVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA---YGSRLYMFGGYN 464
Y GG + +S+ D +T W + RH S L + ++Y+ GGY+
Sbjct: 213 YAAGGYDGQDQLNSVERYDVETETWTFVAP------MRHHRSALGITVHQGKIYVLGGYD 266
Query: 465 GEKALGDLYTFDVHACLWKK 484
G L + +D + W +
Sbjct: 267 GHTFLDSVECYDPDSDTWSE 286
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 295 LGNSINDSQILVFGGFGGMGR-------HARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G ++ + + GGF G R + RN+ ++ P+ TI++ G
Sbjct: 156 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMN-TIRS-----------GA 203
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAA---AVIG 404
++ + ++ GG D + L+ V +++ WT V RH +A V
Sbjct: 204 GVCVLHNCIYAAGG-YDGQDQLNSVERYDVETETWTF------VAPMRHHRSALGITVHQ 256
Query: 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL 435
KIYV GG + T S+ D D+ W E+
Sbjct: 257 GKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 287
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 22/196 (11%)
Query: 322 LFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK 381
L +P+ + P R+G +I H++ +GG ++ S V + + +
Sbjct: 86 LDCYNPMTNQWSPCASMSVPRNRIG--VGVIDGHIYAVGGSHGCIH-HSSVERYEPERDE 142
Query: 382 WTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL-----L 436
W L+ + R AV+ +Y GG + +S + +W+ + +
Sbjct: 143 WHLV---APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTI 199
Query: 437 INGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARF 496
+G G C H+ +Y GGY+G+ L + +DV W A H R
Sbjct: 200 RSGAGVCVLHNC--------IYAAGGYDGQDQLNSVERYDVETETWT---FVAPMRHHRS 248
Query: 497 SHTMFLYKNYLGLFGG 512
+ + +++ + + GG
Sbjct: 249 ALGITVHQGKIYVLGG 264
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSD---VWVFNMAKSKWTLLECSGSVFQPRHRHA 399
PR G ++G ++ +GGR + + +D + +N ++W+ C+ S+ PR+R
Sbjct: 54 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCA-SMSVPRNRIG 110
Query: 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQW 432
VI IY GG + SS+ + + +W
Sbjct: 111 VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 143
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 369 LSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN----DTIFSSLHV 424
LS + +N + W L + PR A V+G +Y GG NN +T S+L
Sbjct: 32 LSYLEAYNPSNGSWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 88
Query: 425 LDTDTLQWKELLINGEGPCARHS 447
+ T QW PCA S
Sbjct: 89 YNPMTNQWS--------PCASMS 103
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 295 LGNSINDSQILVFGGFGGMGRHA-------RRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G + D I GG G H+ R++ L+ P+ + R+G
Sbjct: 108 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPML------------TRRIGV 155
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKI 407
+++ ++ +GG D N L+ + +++W ++ ++ R V+ + I
Sbjct: 156 GVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMITPMNTI---RSGAGVCVLHNCI 211
Query: 408 YVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA---YGSRLYMFGGYN 464
Y GG + +S+ D +T W + RH S L + ++Y+ GGY+
Sbjct: 212 YAAGGYDGQDQLNSVERYDVETETWTFVAP------MRHHRSALGITVHQGKIYVLGGYD 265
Query: 465 GEKALGDLYTFDVHACLWKK 484
G L + +D + W +
Sbjct: 266 GHTFLDSVECYDPDSDTWSE 285
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 295 LGNSINDSQILVFGGFGGMGR-------HARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G ++ + + GGF G R + RN+ ++ P+ TI++ G
Sbjct: 155 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMN-TIRS-----------GA 202
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAA---AVIG 404
++ + ++ GG D + L+ V +++ WT V RH +A V
Sbjct: 203 GVCVLHNCIYAAGG-YDGQDQLNSVERYDVETETWTF------VAPMRHHRSALGITVHQ 255
Query: 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL 435
KIYV GG + T S+ D D+ W E+
Sbjct: 256 GKIYVLGGYDGHTFLDSVECYDPDSDTWSEV 286
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 22/196 (11%)
Query: 322 LFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK 381
L +P+ + P R+G +I H++ +GG ++ S V + + +
Sbjct: 85 LDCYNPMTNQWSPCASMSVPRNRIG--VGVIDGHIYAVGGSHGCIH-HSSVERYEPERDE 141
Query: 382 WTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL-----L 436
W L+ + R AV+ +Y GG + +S + +W+ + +
Sbjct: 142 WHLV---APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTI 198
Query: 437 INGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARF 496
+G G C H+ +Y GGY+G+ L + +DV W A H R
Sbjct: 199 RSGAGVCVLHNC--------IYAAGGYDGQDQLNSVERYDVETETWT---FVAPMRHHRS 247
Query: 497 SHTMFLYKNYLGLFGG 512
+ + +++ + + GG
Sbjct: 248 ALGITVHQGKIYVLGG 263
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSD---VWVFNMAKSKWTLLECSGSVFQPRHRHA 399
PR G ++G ++ +GGR + + +D + +N ++W+ C+ S+ PR+R
Sbjct: 53 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCA-SMSVPRNRIG 109
Query: 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQW 432
VI IY GG + SS+ + + +W
Sbjct: 110 VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 142
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 369 LSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN----DTIFSSLHV 424
LS + +N + W L + PR A V+G +Y GG NN +T S+L
Sbjct: 31 LSYLEAYNPSNGSWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 87
Query: 425 LDTDTLQWKELLINGEGPCARHS 447
+ T QW PCA S
Sbjct: 88 YNPMTNQWS--------PCASMS 102
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 340 SPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399
+P P T ++ D ++I G A D KWT L PR +
Sbjct: 6 TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDT---QAKDKKWTALAAFPG--GPRDQAT 60
Query: 400 AAVIGSKIYVFGGLNNDT-----IFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYG 454
+A I +YVFGG+ ++ +F+ +H + T W +L P H +
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLX--SHAPXGXAGHVTFVHN 118
Query: 455 SRLYMFGGYN 464
+ Y+ GG N
Sbjct: 119 GKAYVTGGVN 128
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 32/200 (16%)
Query: 295 LGNSINDSQILVFGGFGGMGRH-------ARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G + D I GG G H R++ L+ P+ + R+G
Sbjct: 116 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML------------TRRIGV 163
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKI 407
+++ ++ +GG D N L+ + +++W ++ ++ R V+ + I
Sbjct: 164 GVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMITAMNTI---RSGAGVCVLHNCI 219
Query: 408 YVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA---YGSRLYMFGGYN 464
Y GG + +S+ D +T W + P +H S L + R+Y+ GGY+
Sbjct: 220 YAAGGYDGQDQLNSVERYDVETETWTFV-----AP-MKHRRSALGITVHQGRIYVLGGYD 273
Query: 465 GEKALGDLYTFDVHACLWKK 484
G L + +D W +
Sbjct: 274 GHTFLDSVECYDPDTDTWSE 293
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 295 LGNSINDSQILVFGGFGGMGR-------HARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G ++ + + GGF G R + RN+ + I A++T R G
Sbjct: 163 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM-------ITAMNT-----IRSGA 210
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAA---AVIG 404
++ + ++ GG D + L+ V +++ WT V +HR +A V
Sbjct: 211 GVCVLHNCIYAAGGY-DGQDQLNSVERYDVETETWTF------VAPMKHRRSALGITVHQ 263
Query: 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL 435
+IYV GG + T S+ D DT W E+
Sbjct: 264 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 294
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV 402
PR H + +G ++ GG LS + +N + W L + PR A V
Sbjct: 15 PRGSHMAPKVGRLIYTAGGYFR--QSLSYLEAYNPSDGTWLRL---ADLQVPRSGLAGCV 69
Query: 403 IGSKIYVFGGLNN----DTIFSSLHVLDTDTLQWKELLINGEGPCA-----RHSHSMLAY 453
+G +Y GG NN +T S+L + T QW PCA R+ +
Sbjct: 70 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--------PCAPMSVPRNRIGVGVI 121
Query: 454 GSRLYMFGGYNG 465
+Y GG +G
Sbjct: 122 DGHIYAVGGSHG 133
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSD---VWVFNMAKSKWTLLECSGSVFQPRHRHA 399
PR G ++G ++ +GGR + + +D + +N ++W+ C+ + PR+R
Sbjct: 61 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCA-PMSVPRNRIG 117
Query: 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYM 459
VI IY GG + +S+ + + +W + R + LY
Sbjct: 118 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH---LVAPMLTRRIGVGVAVLNRLLYA 174
Query: 460 FGGYNGEKAL 469
GG++G L
Sbjct: 175 VGGFDGTNRL 184
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 32/200 (16%)
Query: 295 LGNSINDSQILVFGGFGGMGRH-------ARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G + D I GG G H R++ L+ P+ + R+G
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML------------TRRIGV 162
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKI 407
+++ ++ +GG D N L+ + +++W ++ ++ R V+ + I
Sbjct: 163 GVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMITAMNTI---RSGAGVCVLHNCI 218
Query: 408 YVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA---YGSRLYMFGGYN 464
Y GG + +S+ D +T W + P +H S L + R+Y+ GGY+
Sbjct: 219 YAAGGYDGQDQLNSVERYDVETETWTFV-----AP-MKHRRSALGITVHQGRIYVLGGYD 272
Query: 465 GEKALGDLYTFDVHACLWKK 484
G L + +D W +
Sbjct: 273 GHTFLDSVECYDPDTDTWSE 292
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 295 LGNSINDSQILVFGGFGGMGR-------HARRNDLFLLDPLQGTIKAIHTEGSPSPRLGH 347
+G ++ + + GGF G R + RN+ + I A++T R G
Sbjct: 162 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM-------ITAMNT-----IRSGA 209
Query: 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAA---AVIG 404
++ + ++ GG D + L+ V +++ WT V +HR +A V
Sbjct: 210 GVCVLHNCIYAAGGY-DGQDQLNSVERYDVETETWTF------VAPMKHRRSALGITVHQ 262
Query: 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL 435
+IYV GG + T S+ D DT W E+
Sbjct: 263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSD---VWVFNMAKSKWTLLECSGSVFQPRHRHA 399
PR G ++G ++ +GGR + + +D + +N ++W+ C+ + PR+R
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCA-PMSVPRNRIG 116
Query: 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYM 459
VI IY GG + +S+ + + +W + R + LY
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH---LVAPMLTRRIGVGVAVLNRLLYA 173
Query: 460 FGGYNGEKAL 469
GG++G L
Sbjct: 174 VGGFDGTNRL 183
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 344 RLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI 403
R+G +++ ++ +GG D N L+ + +++W + ++ R V+
Sbjct: 159 RIGVGVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRXITAXNTI---RSGAGVCVL 214
Query: 404 GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA---YGSRLYMF 460
+ IY GG + +S+ D +T W + +H S L + R+Y+
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP------XKHRRSALGITVHQGRIYVL 268
Query: 461 GGYNGEKALGDLYTFDVHACLWKK 484
GGY+G L + +D W +
Sbjct: 269 GGYDGHTFLDSVECYDPDTDTWSE 292
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 344 RLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAA--- 400
R G ++ + ++ GG D + L+ V +++ WT V +HR +A
Sbjct: 206 RSGAGVCVLHNCIYAAGG-YDGQDQLNSVERYDVETETWTF------VAPXKHRRSALGI 258
Query: 401 AVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKEL 435
V +IYV GG + T S+ D DT W E+
Sbjct: 259 TVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSD---VWVFNMAKSKWTLLECSGSVFQPRHRHA 399
PR G ++G ++ +GGR + + +D + +N ++W+ C+ PR+R
Sbjct: 60 PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWS--PCAPXSV-PRNRIG 116
Query: 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQW 432
VI IY GG + +S+ + + +W
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 343 PRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV 402
PR H +G ++ GG LS + +N + W L + PR A V
Sbjct: 15 PRGSHAPK-VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCV 68
Query: 403 IGSKIYVFGGLNN----DTIFSSLHVLDTDTLQWKELLINGEGPCARHS 447
+G +Y GG NN +T S+L + T QW PCA S
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWS--------PCAPXS 109
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 37.7 bits (86), Expect = 0.035, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD 954
K++V VD+ G G L + + R VYA + NP A+ + NLQ + + D+ + EGD
Sbjct: 33 KNDVAVDVGCGTGGVTLE--LAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGD 90
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 338 EGSPSPRL--GHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPR 395
E P P + GHT D +++IGG+ L+ + V++ K +W L + R
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL---APMQTAR 187
Query: 396 HRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGS 455
A V +I V G+ + + SS V +W P R S S+++
Sbjct: 188 SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF---EAFPQERSSLSLVSLVG 244
Query: 456 RLYMFGGY 463
LY GG+
Sbjct: 245 TLYAIGGF 252
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 850 LEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMAR----LDCKDE-VIVDLFA 904
LE + G+ W + NG+ +F + +++K+ +AR LD + E ++DLF
Sbjct: 239 LETVSGEMPW--YDSNGLRLTFSPRDFIQVNAGVNQKM-VARALEWLDVQPEDRVLDLFC 295
Query: 905 GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSD 946
G+G F LP +A + V E P VE + N + N + +
Sbjct: 296 GMGNFTLPLATQAAS--VVGVEGVPALVEKGQQNARLNGLQN 335
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 850 LEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMAR----LDCKDE-VIVDLFA 904
LE + G+ W + NG+ +F + +++K +AR LD + E ++DLF
Sbjct: 239 LETVSGEXPW--YDSNGLRLTFSPRDFIQVNAGVNQKX-VARALEWLDVQPEDRVLDLFC 295
Query: 905 GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSD 946
G G F LP +A + V E P VE + N + N + +
Sbjct: 296 GXGNFTLPLATQAAS--VVGVEGVPALVEKGQQNARLNGLQN 335
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 369 LSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTD 428
LS V +N ++WT + + R V+ + +Y GG + + S+ V D
Sbjct: 172 LSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT 228
Query: 429 TLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLW 482
T W+++ + R + + A LY+ GG +G L + ++ W
Sbjct: 229 TNAWRQV---ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 341 PSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA- 399
PS R + +F +GG L + + V ++ K +WT SV R R +
Sbjct: 49 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWT------SVANMRDRRST 101
Query: 400 --AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRL 457
AAV+ +Y GG + T SS+ + + +W + R S + G L
Sbjct: 102 LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV---APMNTRRSSVGVGVVGGLL 158
Query: 458 YMFGGYN 464
Y GGY+
Sbjct: 159 YAVGGYD 165
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|4B29|A Chain A, Crystal Structures Of Dmsp Lyases Rddddp And Rndddqii
Length = 217
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 629 LTESSDFNSEAKHPVNDGHQMAASHWVVELDKKY--AKFGKDILKKFGWLHLG 679
LT S+ P+ D AA H VE Y A+ G+D L +FGW L
Sbjct: 71 LTRDPGHASDQSQPLRDALVAAAPH--VEWRHSYTEAEVGRDFLNRFGWFELA 121
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---------QAN--SVSDH 947
+DLFAG+G F L L A VY+ EW+ A E + N Q N ++ DH
Sbjct: 14 FIDLFAGLGGFRLA-LESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDH 72
Query: 948 CIVLEG 953
I+ G
Sbjct: 73 DILCAG 78
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD 954
+V++++ G G + L +AK V ACE +P V L +Q V+ VL GD
Sbjct: 30 DVVLEVGPGTGNMTVKLLEKAKK--VVACELDPRLVAELHKRVQGTPVASKLQVLVGD 85
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 576 PVKINLSSVPLMSLDDCNIPPEMGEKLVTHHYEGVTGEK 614
P+K +S P +D + P GE+L T H EGV K
Sbjct: 438 PMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 476
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG 953
KD+V+VD+ G G + R K VYA ++ A+E K NL ++ + C +++G
Sbjct: 35 KDDVVVDVGCGSGGXTVEIAKRCK--FVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKG 90
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 366 LNILSDVWVFNMAK-SKWTLLECSGSVFQPRHRHAAAVIGSKIYVFG--GLNNDTIFSSL 422
+ L DV F + + +W L+C ++F R A+V GS +V G++N
Sbjct: 41 VKALDDVGFFTLLQPQQWGGLQCDPALFFEATRRLASVCGSTGWVSSIVGVHN------W 94
Query: 423 HVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGY 463
H+ D +E+ GE P R S S G+ + + GGY
Sbjct: 95 HLALFDQRAQEEVW--GEDPSTRISSSYAPMGAGVVVDGGY 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,417,509
Number of Sequences: 62578
Number of extensions: 1385524
Number of successful extensions: 2804
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2739
Number of HSP's gapped (non-prelim): 67
length of query: 1057
length of database: 14,973,337
effective HSP length: 109
effective length of query: 948
effective length of database: 8,152,335
effective search space: 7728413580
effective search space used: 7728413580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)