Query 036185
Match_columns 1057
No_of_seqs 859 out of 4996
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1228 Uncharacterized conser 100.0 2.5E-61 5.5E-66 471.3 20.2 201 37-237 3-210 (256)
2 PRK04235 hypothetical protein; 100.0 3.6E-61 7.9E-66 490.4 22.2 191 38-240 1-195 (196)
3 PF02676 TYW3: Methyltransfera 100.0 8.4E-60 1.8E-64 488.4 17.6 198 42-239 1-204 (205)
4 COG1590 Uncharacterized conser 100.0 5.6E-56 1.2E-60 440.6 21.0 190 39-240 1-193 (208)
5 COG2520 Predicted methyltransf 100.0 7.1E-53 1.5E-57 463.8 32.6 334 652-1053 2-340 (341)
6 KOG1227 Putative methyltransfe 100.0 2.9E-47 6.4E-52 396.2 15.9 288 760-1053 57-348 (351)
7 KOG4693 Uncharacterized conser 100.0 7.5E-39 1.6E-43 326.0 23.3 282 274-564 5-312 (392)
8 PLN02193 nitrile-specifier pro 100.0 2.6E-36 5.7E-41 358.5 37.2 300 270-582 151-468 (470)
9 PLN02153 epithiospecifier prot 100.0 5E-36 1.1E-40 343.4 36.1 302 269-581 6-338 (341)
10 PF02475 Met_10: Met-10+ like- 100.0 1.2E-36 2.6E-41 315.4 20.8 198 793-995 1-200 (200)
11 KOG4441 Proteins containing BT 100.0 1E-34 2.2E-39 348.9 30.5 271 301-591 284-555 (571)
12 PLN02193 nitrile-specifier pro 100.0 1.2E-33 2.7E-38 335.6 39.1 285 302-591 121-419 (470)
13 KOG4693 Uncharacterized conser 100.0 1.6E-34 3.5E-39 294.4 18.5 244 264-514 48-312 (392)
14 KOG4441 Proteins containing BT 100.0 9.2E-33 2E-37 332.0 33.2 310 203-537 229-555 (571)
15 PHA02713 hypothetical protein; 100.0 1.4E-32 3E-37 332.0 30.3 262 304-590 260-541 (557)
16 KOG0379 Kelch repeat-containin 100.0 1.2E-32 2.7E-37 326.2 29.0 270 280-555 54-329 (482)
17 PLN02153 epithiospecifier prot 100.0 5.4E-32 1.2E-36 310.1 32.8 265 328-592 5-294 (341)
18 TIGR03548 mutarot_permut cycli 100.0 7.4E-32 1.6E-36 306.7 30.7 266 285-564 2-313 (323)
19 PHA02713 hypothetical protein; 100.0 6.6E-32 1.4E-36 326.1 25.5 233 283-537 290-542 (557)
20 TIGR03547 muta_rot_YjhT mutatr 100.0 1.3E-30 2.9E-35 299.4 32.2 258 283-565 4-332 (346)
21 KOG4152 Host cell transcriptio 100.0 3.7E-31 8E-36 289.4 21.5 286 269-565 16-343 (830)
22 PHA03098 kelch-like protein; P 100.0 4.4E-30 9.5E-35 312.2 28.5 232 287-537 285-520 (534)
23 PRK14131 N-acetylneuraminic ac 100.0 5.9E-29 1.3E-33 288.3 31.9 271 283-581 25-367 (376)
24 KOG0379 Kelch repeat-containin 100.0 1.6E-29 3.5E-34 299.6 26.2 252 339-593 56-312 (482)
25 KOG1230 Protein containing rep 100.0 7.1E-30 1.5E-34 275.0 20.2 253 281-537 61-349 (521)
26 PHA03098 kelch-like protein; P 100.0 7.5E-29 1.6E-33 301.5 29.6 264 304-591 253-520 (534)
27 PHA02790 Kelch-like protein; P 100.0 2.4E-28 5.1E-33 291.3 28.0 210 293-535 268-477 (480)
28 KOG1230 Protein containing rep 100.0 6.5E-28 1.4E-32 259.9 20.0 249 339-589 62-347 (521)
29 KOG2078 tRNA modification enzy 99.9 1.1E-27 2.3E-32 261.0 15.4 284 748-1055 116-453 (495)
30 TIGR03548 mutarot_permut cycli 99.9 5E-26 1.1E-30 258.9 28.7 243 342-591 2-288 (323)
31 PRK14131 N-acetylneuraminic ac 99.9 4.6E-26 1E-30 264.2 26.1 235 285-534 73-374 (376)
32 TIGR03547 muta_rot_YjhT mutatr 99.9 6.8E-26 1.5E-30 260.4 26.7 230 285-526 52-344 (346)
33 PHA02790 Kelch-like protein; P 99.9 2.3E-25 4.9E-30 265.8 28.0 211 349-589 267-477 (480)
34 KOG4152 Host cell transcriptio 99.9 4E-26 8.6E-31 250.2 15.7 258 330-590 17-310 (830)
35 COG1092 Predicted SAM-dependen 99.9 2.7E-24 5.9E-29 242.9 22.9 250 767-1027 79-362 (393)
36 PRK15128 23S rRNA m(5)C1962 me 99.9 9.5E-24 2.1E-28 242.7 25.8 240 789-1046 110-377 (396)
37 PF10672 Methyltrans_SAM: S-ad 99.9 2.6E-23 5.7E-28 226.7 18.0 215 794-1020 18-257 (286)
38 PRK11783 rlmL 23S rRNA m(2)G24 99.8 2E-19 4.2E-24 222.8 24.0 254 767-1045 399-687 (702)
39 COG2265 TrmA SAM-dependent met 99.7 5.1E-17 1.1E-21 188.0 21.5 248 766-1046 162-430 (432)
40 TIGR02085 meth_trns_rumB 23S r 99.6 1.2E-14 2.6E-19 167.7 24.1 254 766-1046 93-366 (374)
41 TIGR00479 rumA 23S rRNA (uraci 99.6 1.1E-14 2.4E-19 172.0 22.7 253 767-1046 154-430 (431)
42 PRK03522 rumB 23S rRNA methylu 99.6 4.1E-14 8.8E-19 160.0 24.2 225 766-1000 33-277 (315)
43 COG3055 Uncharacterized protei 99.6 1E-13 2.2E-18 149.7 22.4 252 291-565 41-360 (381)
44 PF05958 tRNA_U5-meth_tr: tRNA 99.6 9.6E-15 2.1E-19 166.9 15.6 162 864-1048 162-345 (352)
45 PRK05031 tRNA (uracil-5-)-meth 99.5 1E-13 2.2E-18 159.3 18.2 174 851-1047 156-354 (362)
46 PRK04338 N(2),N(2)-dimethylgua 99.5 2.9E-13 6.3E-18 155.5 21.5 121 874-996 30-157 (382)
47 COG3055 Uncharacterized protei 99.5 4.1E-13 8.8E-18 145.1 20.5 241 269-526 69-372 (381)
48 TIGR00308 TRM1 tRNA(guanine-26 99.5 2E-13 4.3E-18 155.9 17.5 133 863-997 2-147 (374)
49 KOG2187 tRNA uracil-5-methyltr 99.5 8.3E-13 1.8E-17 149.8 17.0 232 765-1001 235-494 (534)
50 TIGR02143 trmA_only tRNA (urac 99.5 1E-12 2.2E-17 150.4 18.0 175 849-1046 145-344 (353)
51 KOG2437 Muskelin [Signal trans 99.5 2.6E-14 5.7E-19 158.1 4.2 265 266-536 235-542 (723)
52 TIGR00095 RNA methyltransferas 99.4 2.3E-12 4.9E-17 134.5 11.9 104 894-999 48-161 (189)
53 KOG2437 Muskelin [Signal trans 99.4 2.7E-13 5.8E-18 150.2 4.8 202 328-530 237-473 (723)
54 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.9E-12 6.3E-17 134.1 12.2 105 894-1001 52-163 (199)
55 PF03602 Cons_hypoth95: Conser 99.4 1.1E-12 2.4E-17 135.7 8.8 106 894-1001 41-157 (183)
56 COG4123 Predicted O-methyltran 99.3 1.3E-11 2.8E-16 131.3 15.5 81 894-975 43-126 (248)
57 COG2263 Predicted RNA methylas 99.3 2.2E-11 4.7E-16 122.1 15.9 113 894-1026 44-163 (198)
58 PF05175 MTS: Methyltransferas 99.3 1.2E-11 2.5E-16 127.4 14.6 122 877-1001 10-144 (170)
59 PRK13168 rumA 23S rRNA m(5)U19 99.3 3E-11 6.5E-16 143.1 19.2 164 864-1047 262-435 (443)
60 COG0742 N6-adenine-specific me 99.3 7.6E-12 1.6E-16 127.0 11.5 106 894-1001 42-158 (187)
61 PF13659 Methyltransf_26: Meth 99.3 4.7E-12 1E-16 121.7 9.4 100 896-998 1-116 (117)
62 COG2264 PrmA Ribosomal protein 99.3 2.5E-11 5.5E-16 132.4 15.6 149 866-1026 130-283 (300)
63 PF06325 PrmA: Ribosomal prote 99.3 7.9E-12 1.7E-16 138.0 11.7 146 865-1025 128-277 (295)
64 PRK00107 gidB 16S rRNA methylt 99.3 8.9E-11 1.9E-15 122.0 18.4 124 891-1026 41-164 (187)
65 TIGR03533 L3_gln_methyl protei 99.3 6.6E-11 1.4E-15 131.7 17.8 107 865-974 88-199 (284)
66 TIGR00138 gidB 16S rRNA methyl 99.3 5.1E-11 1.1E-15 123.5 15.4 101 895-997 42-142 (181)
67 TIGR03704 PrmC_rel_meth putati 99.3 1.1E-10 2.3E-15 127.6 17.5 145 865-1027 53-236 (251)
68 PF12847 Methyltransf_18: Meth 99.2 4.4E-11 9.4E-16 113.9 11.4 103 895-998 1-112 (112)
69 PRK14966 unknown domain/N5-glu 99.2 5.8E-10 1.2E-14 127.4 21.1 173 849-1048 210-416 (423)
70 PRK11805 N5-glutamine S-adenos 99.2 2.1E-10 4.5E-15 128.8 17.2 107 865-974 100-211 (307)
71 PRK00377 cbiT cobalt-precorrin 99.2 1.7E-10 3.6E-15 121.9 15.2 124 893-1026 38-165 (198)
72 COG2890 HemK Methylase of poly 99.2 4.2E-10 9E-15 124.5 18.8 164 865-1049 79-275 (280)
73 PRK14967 putative methyltransf 99.2 3.2E-10 7E-15 122.1 17.5 101 893-998 34-160 (223)
74 TIGR00537 hemK_rel_arch HemK-r 99.2 5.5E-10 1.2E-14 116.0 18.3 117 894-1026 18-160 (179)
75 COG2813 RsmC 16S RNA G1207 met 99.2 5.9E-11 1.3E-15 128.6 11.2 130 866-1001 128-270 (300)
76 COG1867 TRM1 N2,N2-dimethylgua 99.2 3.9E-10 8.5E-15 124.0 16.9 122 875-998 27-155 (380)
77 COG2242 CobL Precorrin-6B meth 99.2 6.5E-10 1.4E-14 112.3 17.0 122 893-1025 32-154 (187)
78 TIGR00446 nop2p NOL1/NOP2/sun 99.2 4.4E-10 9.5E-15 124.0 16.4 108 893-1003 69-205 (264)
79 PRK08287 cobalt-precorrin-6Y C 99.2 1E-09 2.2E-14 114.9 18.3 121 893-1025 29-150 (187)
80 TIGR00536 hemK_fam HemK family 99.2 1.2E-09 2.6E-14 121.9 19.5 108 865-975 81-193 (284)
81 PRK01544 bifunctional N5-gluta 99.1 8.6E-10 1.9E-14 132.0 18.6 137 896-1050 139-306 (506)
82 TIGR03534 RF_mod_PrmC protein- 99.1 2.4E-09 5.2E-14 117.4 18.6 145 866-1025 57-235 (251)
83 PRK15001 SAM-dependent 23S rib 99.1 1.8E-09 3.9E-14 123.5 17.8 123 877-1001 207-344 (378)
84 PF02005 TRM: N2,N2-dimethylgu 99.1 7.9E-10 1.7E-14 126.7 14.6 171 874-1053 18-224 (377)
85 PRK00517 prmA ribosomal protei 99.1 2.3E-09 4.9E-14 117.5 17.5 142 866-1026 87-233 (250)
86 TIGR00406 prmA ribosomal prote 99.1 2.6E-09 5.7E-14 119.4 16.9 135 864-1001 125-263 (288)
87 PRK07402 precorrin-6B methylas 99.1 2.7E-09 5.9E-14 112.5 16.0 105 893-999 38-144 (196)
88 PRK14902 16S rRNA methyltransf 99.0 4.2E-09 9.2E-14 125.0 17.7 107 893-1002 248-384 (444)
89 PF13847 Methyltransf_31: Meth 99.0 1.8E-09 4E-14 108.9 12.4 108 894-1003 2-116 (152)
90 PRK14904 16S rRNA methyltransf 99.0 4.7E-09 1E-13 124.5 17.2 109 893-1004 248-384 (445)
91 TIGR02752 MenG_heptapren 2-hep 99.0 1.7E-08 3.6E-13 109.4 19.8 116 882-999 30-153 (231)
92 PRK04266 fibrillarin; Provisio 99.0 1.1E-08 2.4E-13 109.6 17.9 122 893-1025 70-204 (226)
93 PRK14901 16S rRNA methyltransf 99.0 5.8E-09 1.3E-13 123.3 17.1 121 893-1022 250-403 (434)
94 PF09445 Methyltransf_15: RNA 99.0 5.8E-10 1.3E-14 111.8 7.1 75 897-974 1-79 (163)
95 PRK14903 16S rRNA methyltransf 99.0 5.8E-09 1.3E-13 122.7 16.7 108 892-1002 234-371 (431)
96 PRK09328 N5-glutamine S-adenos 99.0 1.8E-08 3.9E-13 112.1 19.6 106 866-975 77-186 (275)
97 PRK00121 trmB tRNA (guanine-N( 99.0 3.9E-09 8.5E-14 111.7 13.5 122 895-1027 40-177 (202)
98 TIGR02469 CbiT precorrin-6Y C5 99.0 6.7E-09 1.4E-13 100.5 14.1 101 894-996 18-121 (124)
99 PRK09489 rsmC 16S ribosomal RN 99.0 1.2E-08 2.6E-13 116.2 18.1 131 865-1002 165-308 (342)
100 TIGR01177 conserved hypothetic 99.0 4.4E-09 9.5E-14 120.0 14.5 103 893-1000 180-297 (329)
101 PRK10901 16S rRNA methyltransf 99.0 8.1E-09 1.7E-13 121.9 16.9 106 893-1002 242-377 (427)
102 TIGR00563 rsmB ribosomal RNA s 99.0 9.9E-09 2.2E-13 121.1 16.8 109 893-1002 236-373 (426)
103 PRK14968 putative methyltransf 99.0 1.8E-08 3.9E-13 105.2 16.7 119 894-1025 22-167 (188)
104 COG2519 GCD14 tRNA(1-methylade 99.0 1.3E-08 2.8E-13 107.5 15.2 106 893-1000 92-198 (256)
105 PRK13944 protein-L-isoaspartat 99.0 7.7E-09 1.7E-13 109.8 13.9 101 893-996 70-172 (205)
106 COG2226 UbiE Methylase involve 98.9 8.2E-09 1.8E-13 110.2 13.3 107 894-1002 50-161 (238)
107 PF13964 Kelch_6: Kelch motif 98.9 2.3E-09 5.1E-14 86.4 6.3 50 343-395 1-50 (50)
108 COG2521 Predicted archaeal met 98.9 4E-09 8.7E-14 108.2 9.1 128 893-1025 132-271 (287)
109 TIGR00080 pimt protein-L-isoas 98.9 1.2E-08 2.7E-13 109.2 13.3 100 893-996 75-176 (215)
110 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.8E-08 3.9E-13 106.0 13.4 103 895-1000 16-135 (194)
111 PLN02781 Probable caffeoyl-CoA 98.9 1.1E-08 2.4E-13 110.6 11.8 106 889-995 62-176 (234)
112 PF01209 Ubie_methyltran: ubiE 98.9 9E-09 2E-13 110.9 10.6 108 893-1002 45-158 (233)
113 PRK11036 putative S-adenosyl-L 98.9 5.8E-08 1.3E-12 106.8 17.2 101 894-997 43-149 (255)
114 PLN02476 O-methyltransferase 98.8 1.9E-08 4.1E-13 110.0 12.0 107 888-996 111-227 (278)
115 PLN02233 ubiquinone biosynthes 98.8 9.8E-08 2.1E-12 105.2 17.3 109 893-1002 71-187 (261)
116 PF01170 UPF0020: Putative RNA 98.8 2E-08 4.4E-13 104.0 11.1 82 893-975 26-117 (179)
117 PRK13942 protein-L-isoaspartat 98.8 4.5E-08 9.8E-13 104.4 13.7 100 893-996 74-175 (212)
118 PLN02244 tocopherol O-methyltr 98.8 3E-08 6.4E-13 113.5 13.1 105 894-1000 117-226 (340)
119 PF08704 GCD14: tRNA methyltra 98.8 7.2E-08 1.6E-12 103.9 14.9 123 893-1025 38-165 (247)
120 PHA03411 putative methyltransf 98.8 5.3E-08 1.1E-12 105.4 13.7 93 874-975 45-137 (279)
121 PRK11873 arsM arsenite S-adeno 98.8 7E-08 1.5E-12 107.3 15.1 107 893-1001 75-187 (272)
122 PLN02672 methionine S-methyltr 98.8 8.7E-08 1.9E-12 121.4 17.5 107 865-974 85-213 (1082)
123 KOG2904 Predicted methyltransf 98.8 6.6E-08 1.4E-12 101.7 13.3 105 895-1001 148-289 (328)
124 PTZ00146 fibrillarin; Provisio 98.8 1.6E-07 3.4E-12 102.9 16.6 128 893-1025 130-265 (293)
125 PHA03412 putative methyltransf 98.8 3.2E-08 6.9E-13 104.7 10.3 90 877-975 33-125 (241)
126 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.5E-08 5.5E-13 104.4 9.0 102 894-1000 58-164 (243)
127 PRK14121 tRNA (guanine-N(7)-)- 98.7 5.8E-08 1.3E-12 110.6 12.5 103 895-1000 122-238 (390)
128 PRK04457 spermidine synthase; 98.7 1.1E-07 2.4E-12 104.6 14.0 107 894-1001 65-181 (262)
129 PRK15451 tRNA cmo(5)U34 methyl 98.7 1.6E-07 3.4E-12 102.8 14.9 105 893-999 54-166 (247)
130 PRK11207 tellurite resistance 98.7 8.3E-08 1.8E-12 101.2 12.2 98 894-995 29-132 (197)
131 PLN02772 guanylate kinase 98.7 6.8E-08 1.5E-12 109.4 10.9 88 341-430 22-110 (398)
132 PF13964 Kelch_6: Kelch motif 98.7 3.4E-08 7.4E-13 79.6 6.2 49 444-495 1-50 (50)
133 PLN02396 hexaprenyldihydroxybe 98.7 8.6E-08 1.9E-12 107.9 11.5 104 894-1000 130-238 (322)
134 KOG1540 Ubiquinone biosynthesi 98.7 3.1E-07 6.8E-12 96.0 14.1 109 893-1002 98-219 (296)
135 PRK12335 tellurite resistance 98.7 1.6E-07 3.4E-12 105.2 12.4 98 895-997 120-223 (287)
136 COG1041 Predicted DNA modifica 98.6 9.1E-08 2E-12 105.9 10.0 102 892-998 194-311 (347)
137 TIGR00477 tehB tellurite resis 98.6 1.4E-07 3E-12 99.4 11.0 98 895-997 30-133 (195)
138 smart00828 PKS_MT Methyltransf 98.6 2.2E-07 4.8E-12 100.1 12.7 129 897-1026 1-139 (224)
139 TIGR02021 BchM-ChlM magnesium 98.6 3.9E-07 8.5E-12 97.9 14.5 73 894-970 54-126 (219)
140 PRK00312 pcm protein-L-isoaspa 98.6 2.9E-07 6.3E-12 98.3 13.4 100 893-998 76-176 (212)
141 PF02353 CMAS: Mycolic acid cy 98.6 9.6E-08 2.1E-12 105.4 9.9 106 893-1002 60-171 (273)
142 PRK13943 protein-L-isoaspartat 98.6 2.6E-07 5.7E-12 103.9 13.1 101 893-997 78-180 (322)
143 PRK00811 spermidine synthase; 98.6 6.8E-07 1.5E-11 99.6 16.3 106 894-1000 75-194 (283)
144 PF13415 Kelch_3: Galactose ox 98.6 7.3E-08 1.6E-12 77.3 5.9 48 353-403 1-49 (49)
145 TIGR02716 C20_methyl_CrtF C-20 98.6 6.2E-07 1.3E-11 101.5 15.8 105 893-1000 147-257 (306)
146 PRK11933 yebU rRNA (cytosine-C 98.6 4.9E-07 1.1E-11 106.6 15.1 107 893-1002 111-247 (470)
147 PRK11188 rrmJ 23S rRNA methylt 98.6 7.2E-07 1.6E-11 94.9 15.0 98 892-1002 48-170 (209)
148 COG4076 Predicted RNA methylas 98.6 5.6E-08 1.2E-12 96.4 5.1 88 896-987 33-126 (252)
149 PTZ00098 phosphoethanolamine N 98.6 6.3E-07 1.4E-11 98.9 14.2 145 876-1025 31-196 (263)
150 PF01344 Kelch_1: Kelch motif; 98.6 9.3E-08 2E-12 75.9 5.2 44 343-386 1-44 (47)
151 smart00650 rADc Ribosomal RNA 98.6 4.8E-07 1E-11 93.1 11.8 76 894-975 12-88 (169)
152 PLN02772 guanylate kinase 98.6 2.7E-07 5.9E-12 104.6 10.8 87 442-530 22-110 (398)
153 PRK01581 speE spermidine synth 98.6 1.5E-06 3.3E-11 97.7 16.5 144 894-1048 149-310 (374)
154 COG2230 Cfa Cyclopropane fatty 98.5 8.4E-07 1.8E-11 96.5 13.8 106 893-1002 70-181 (283)
155 PRK15068 tRNA mo(5)U34 methylt 98.5 1.1E-06 2.4E-11 99.6 15.5 130 894-1025 121-268 (322)
156 PRK03612 spermidine synthase; 98.5 3.3E-07 7.3E-12 110.5 11.6 124 894-1024 296-437 (521)
157 PF13418 Kelch_4: Galactose ox 98.5 9.7E-08 2.1E-12 76.5 4.5 47 343-392 1-48 (49)
158 PRK14103 trans-aconitate 2-met 98.5 4.5E-07 9.8E-12 99.8 10.9 95 894-997 28-126 (255)
159 PLN02490 MPBQ/MSBQ methyltrans 98.5 2.1E-06 4.6E-11 97.1 16.5 127 894-1025 112-250 (340)
160 TIGR00740 methyltransferase, p 98.5 2.3E-06 5E-11 93.2 16.1 106 893-1000 51-164 (239)
161 PF13415 Kelch_3: Galactose ox 98.5 2.3E-07 5E-12 74.3 6.0 47 454-503 1-49 (49)
162 COG0116 Predicted N6-adenine-s 98.5 6E-07 1.3E-11 100.9 11.3 82 894-976 190-311 (381)
163 PRK01683 trans-aconitate 2-met 98.5 9.5E-07 2.1E-11 97.4 12.9 97 894-997 30-130 (258)
164 TIGR00452 methyltransferase, p 98.5 2.1E-06 4.6E-11 96.4 15.6 131 893-1025 119-267 (314)
165 KOG3191 Predicted N6-DNA-methy 98.5 3.8E-06 8.2E-11 83.7 15.2 120 896-1027 44-189 (209)
166 PF07646 Kelch_2: Kelch motif; 98.5 2.8E-07 6.1E-12 73.9 6.0 44 343-386 1-46 (49)
167 TIGR00438 rrmJ cell division p 98.5 1.9E-06 4E-11 90.3 13.8 98 890-1000 27-149 (188)
168 PF01135 PCMT: Protein-L-isoas 98.5 4.7E-07 1E-11 95.7 9.2 101 893-998 70-173 (209)
169 COG0144 Sun tRNA and rRNA cyto 98.5 2.9E-06 6.3E-11 97.3 16.0 110 892-1004 153-295 (355)
170 KOG1253 tRNA methyltransferase 98.5 5.5E-07 1.2E-11 102.4 9.8 106 892-998 106-217 (525)
171 COG4122 Predicted O-methyltran 98.5 1.4E-06 3.1E-11 91.8 12.2 113 888-1001 52-170 (219)
172 PF01596 Methyltransf_3: O-met 98.4 5.6E-07 1.2E-11 94.9 9.1 106 893-999 43-157 (205)
173 PRK11727 23S rRNA mA1618 methy 98.4 6.3E-07 1.4E-11 100.4 9.7 80 895-975 114-200 (321)
174 PLN02366 spermidine synthase 98.4 1.3E-05 2.7E-10 90.0 19.6 103 894-998 90-207 (308)
175 PLN02336 phosphoethanolamine N 98.4 1.7E-06 3.7E-11 104.1 13.6 129 893-1025 264-408 (475)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.4E-06 3E-11 109.0 12.8 81 894-975 189-314 (702)
177 PF07646 Kelch_2: Kelch motif; 98.4 5.3E-07 1.1E-11 72.3 5.9 45 394-438 1-48 (49)
178 PF08241 Methyltransf_11: Meth 98.4 5.7E-07 1.2E-11 82.2 7.1 90 900-995 1-95 (95)
179 PF01344 Kelch_1: Kelch motif; 98.4 5.5E-07 1.2E-11 71.4 5.9 45 394-438 1-46 (47)
180 PF05185 PRMT5: PRMT5 arginine 98.4 5.5E-07 1.2E-11 105.8 8.5 97 896-993 187-293 (448)
181 KOG2730 Methylase [General fun 98.4 1.6E-07 3.4E-12 95.9 3.3 79 895-975 94-177 (263)
182 COG2518 Pcm Protein-L-isoaspar 98.4 2.4E-06 5.2E-11 88.7 11.8 100 892-998 69-170 (209)
183 KOG3420 Predicted RNA methylas 98.4 6E-07 1.3E-11 85.7 6.7 90 894-987 47-144 (185)
184 PF03089 RAG2: Recombination a 98.4 1.8E-05 3.8E-10 83.9 17.9 161 355-516 40-231 (337)
185 PTZ00338 dimethyladenosine tra 98.4 1E-06 2.3E-11 98.2 9.4 80 893-976 34-113 (294)
186 cd02440 AdoMet_MTases S-adenos 98.4 3.1E-06 6.6E-11 77.8 10.8 96 898-996 1-103 (107)
187 PRK10742 putative methyltransf 98.4 1.1E-06 2.4E-11 93.6 8.6 81 893-976 84-176 (250)
188 PRK06922 hypothetical protein; 98.4 2.9E-06 6.2E-11 101.7 12.9 102 894-998 417-538 (677)
189 PF13418 Kelch_4: Galactose ox 98.3 4.9E-07 1.1E-11 72.4 4.5 48 286-341 1-48 (49)
190 PRK00216 ubiE ubiquinone/menaq 98.3 3.5E-06 7.6E-11 91.4 12.5 106 894-1000 50-161 (239)
191 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 9E-06 2E-10 87.2 15.5 102 894-999 38-145 (223)
192 TIGR00417 speE spermidine synt 98.3 9.7E-06 2.1E-10 89.9 16.0 105 894-1000 71-189 (270)
193 TIGR03840 TMPT_Se_Te thiopurin 98.3 4.3E-06 9.3E-11 89.1 12.1 101 894-1000 33-155 (213)
194 PF03848 TehB: Tellurite resis 98.3 3.4E-06 7.3E-11 87.4 10.9 106 889-1000 25-136 (192)
195 KOG1500 Protein arginine N-met 98.3 2.7E-06 5.8E-11 91.5 10.3 106 894-1001 176-293 (517)
196 PLN03075 nicotianamine synthas 98.3 4.6E-06 1E-10 91.9 12.1 102 895-997 123-233 (296)
197 PRK10258 biotin biosynthesis p 98.3 4.2E-06 9.1E-11 91.9 11.9 98 895-1001 42-144 (251)
198 PF13649 Methyltransf_25: Meth 98.3 9.4E-07 2E-11 82.5 5.7 90 899-991 1-101 (101)
199 PRK07580 Mg-protoporphyrin IX 98.3 7.6E-06 1.6E-10 88.5 13.0 74 894-971 62-135 (230)
200 PF13854 Kelch_5: Kelch motif 98.3 1.7E-06 3.7E-11 66.8 5.4 41 340-380 1-42 (42)
201 PRK13255 thiopurine S-methyltr 98.2 5.3E-06 1.2E-10 88.7 10.9 96 894-995 36-153 (218)
202 PRK11705 cyclopropane fatty ac 98.2 5.6E-06 1.2E-10 96.1 11.7 100 893-1000 165-270 (383)
203 PLN02585 magnesium protoporphy 98.2 1.7E-05 3.8E-10 89.2 15.0 72 895-970 144-219 (315)
204 PRK08317 hypothetical protein; 98.2 1.5E-05 3.3E-10 86.3 14.1 103 893-998 17-125 (241)
205 PLN02589 caffeoyl-CoA O-methyl 98.2 6.5E-06 1.4E-10 89.2 10.6 102 893-995 77-188 (247)
206 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 5.3E-06 1.1E-10 92.3 10.2 110 892-1004 82-226 (283)
207 TIGR01983 UbiG ubiquinone bios 98.2 9.6E-06 2.1E-10 87.3 11.8 101 895-999 45-151 (224)
208 TIGR03587 Pse_Me-ase pseudamin 98.2 1.1E-05 2.3E-10 85.6 11.8 101 892-998 40-143 (204)
209 KOG2915 tRNA(1-methyladenosine 98.2 2.6E-05 5.6E-10 82.6 14.0 127 893-1030 103-233 (314)
210 KOG1270 Methyltransferases [Co 98.2 4.3E-06 9.4E-11 88.4 8.1 102 895-1001 89-199 (282)
211 KOG1499 Protein arginine N-met 98.2 5.6E-06 1.2E-10 91.4 9.3 76 894-971 59-135 (346)
212 PRK14896 ksgA 16S ribosomal RN 98.2 5.7E-06 1.2E-10 91.1 9.2 77 893-976 27-103 (258)
213 PF05401 NodS: Nodulation prot 98.2 1.5E-05 3.2E-10 81.8 11.4 143 896-1051 44-195 (201)
214 PF02390 Methyltransf_4: Putat 98.2 1.6E-05 3.4E-10 83.5 12.0 101 897-1000 19-136 (195)
215 COG3897 Predicted methyltransf 98.1 4.5E-06 9.7E-11 84.3 7.3 101 894-999 78-181 (218)
216 PLN02336 phosphoethanolamine N 98.1 9.4E-06 2E-10 97.7 11.5 113 881-999 21-144 (475)
217 PF13854 Kelch_5: Kelch motif 98.1 4.9E-06 1.1E-10 64.3 5.5 40 441-480 1-42 (42)
218 TIGR03438 probable methyltrans 98.1 8.4E-05 1.8E-09 83.8 17.8 110 888-998 56-178 (301)
219 PRK05134 bifunctional 3-demeth 98.1 1.7E-05 3.8E-10 86.0 11.8 101 894-999 47-153 (233)
220 PF02384 N6_Mtase: N-6 DNA Met 98.1 4.7E-06 1E-10 94.6 7.5 118 877-996 28-182 (311)
221 TIGR02072 BioC biotin biosynth 98.1 1.4E-05 3E-10 86.7 10.6 101 895-1001 34-139 (240)
222 KOG1122 tRNA and rRNA cytosine 98.1 2E-05 4.3E-10 88.3 11.3 110 892-1004 238-378 (460)
223 PRK00274 ksgA 16S ribosomal RN 98.1 7.5E-06 1.6E-10 90.9 7.8 77 893-976 40-117 (272)
224 smart00612 Kelch Kelch domain. 98.1 4.8E-06 1E-10 65.6 4.3 47 355-405 1-47 (47)
225 PLN02823 spermine synthase 98.0 3.9E-05 8.4E-10 87.0 13.2 102 895-998 103-221 (336)
226 PF10294 Methyltransf_16: Puta 98.0 2.5E-05 5.4E-10 80.6 10.4 106 893-999 43-159 (173)
227 TIGR01640 F_box_assoc_1 F-box 98.0 0.0015 3.2E-08 70.7 23.9 200 320-530 14-230 (230)
228 PF08242 Methyltransf_12: Meth 98.0 3.2E-06 6.9E-11 78.5 2.2 92 900-993 1-99 (99)
229 smart00612 Kelch Kelch domain. 98.0 1.1E-05 2.4E-10 63.4 4.7 47 456-505 1-47 (47)
230 PRK11088 rrmA 23S rRNA methylt 98.0 4.1E-05 9E-10 85.1 11.0 96 895-1000 85-184 (272)
231 cd00315 Cyt_C5_DNA_methylase C 97.9 6.3E-05 1.4E-09 83.6 11.7 124 898-1031 2-143 (275)
232 PRK05785 hypothetical protein; 97.9 6.3E-05 1.4E-09 81.1 10.9 85 894-988 50-139 (226)
233 PF07021 MetW: Methionine bios 97.9 3.5E-05 7.5E-10 79.0 8.3 102 886-998 4-112 (193)
234 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00045 9.7E-09 74.4 16.8 152 370-541 46-211 (243)
235 smart00138 MeTrc Methyltransfe 97.8 5.3E-05 1.2E-09 83.6 9.3 104 895-999 99-244 (264)
236 PF03089 RAG2: Recombination a 97.8 0.002 4.4E-08 68.7 19.8 171 289-465 24-230 (337)
237 KOG1663 O-methyltransferase [S 97.8 0.0001 2.2E-09 76.9 10.1 102 894-997 72-183 (237)
238 TIGR02081 metW methionine bios 97.8 9E-05 1.9E-09 78.0 9.8 75 888-971 6-83 (194)
239 PF01564 Spermine_synth: Sperm 97.8 0.00016 3.5E-09 78.9 12.0 145 894-1048 75-234 (246)
240 COG4106 Tam Trans-aconitate me 97.8 6.3E-05 1.4E-09 77.3 7.9 100 894-1000 29-132 (257)
241 KOG1271 Methyltransferases [Ge 97.8 0.00014 2.9E-09 72.8 9.7 105 896-1002 68-186 (227)
242 COG0220 Predicted S-adenosylme 97.8 0.00015 3.2E-09 77.6 10.7 101 897-1000 50-167 (227)
243 PF08003 Methyltransf_9: Prote 97.8 0.00017 3.8E-09 78.8 11.4 130 894-1025 114-261 (315)
244 PRK06202 hypothetical protein; 97.7 0.00016 3.5E-09 78.4 10.8 75 894-971 59-137 (232)
245 PF13489 Methyltransf_23: Meth 97.7 0.00013 2.8E-09 73.8 8.8 98 889-1000 16-118 (161)
246 TIGR00755 ksgA dimethyladenosi 97.7 0.00011 2.3E-09 80.9 8.6 81 888-975 20-105 (253)
247 COG0030 KsgA Dimethyladenosine 97.7 0.00017 3.6E-09 78.0 9.4 79 893-977 28-108 (259)
248 TIGR00478 tly hemolysin TlyA f 97.7 0.00029 6.3E-09 75.5 11.2 117 894-1025 74-211 (228)
249 TIGR01640 F_box_assoc_1 F-box 97.6 0.0092 2E-07 64.5 22.9 183 370-562 14-215 (230)
250 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00014 3.1E-09 80.7 8.7 86 882-971 7-98 (296)
251 PF00145 DNA_methylase: C-5 cy 97.6 0.00022 4.7E-09 81.5 9.7 121 898-1030 2-141 (335)
252 TIGR02987 met_A_Alw26 type II 97.6 0.00026 5.7E-09 86.2 10.8 97 877-975 6-123 (524)
253 PF04816 DUF633: Family of unk 97.6 0.00063 1.4E-08 71.8 11.9 114 899-1026 1-119 (205)
254 PF05724 TPMT: Thiopurine S-me 97.6 0.00013 2.8E-09 77.9 6.6 126 893-1020 35-180 (218)
255 PF07250 Glyoxal_oxid_N: Glyox 97.5 0.0027 5.9E-08 68.4 16.2 146 321-485 47-205 (243)
256 TIGR01444 fkbM_fam methyltrans 97.5 0.00021 4.5E-09 71.1 7.2 60 898-958 1-60 (143)
257 PF02527 GidB: rRNA small subu 97.5 0.0012 2.7E-08 68.4 13.0 100 898-999 51-150 (184)
258 PF01861 DUF43: Protein of unk 97.4 0.0027 5.8E-08 67.5 14.2 123 894-1026 43-173 (243)
259 PRK13256 thiopurine S-methyltr 97.4 0.00065 1.4E-08 72.6 9.7 106 894-1001 42-167 (226)
260 PF00891 Methyltransf_2: O-met 97.4 0.0014 3.1E-08 71.4 12.3 98 894-1002 99-204 (241)
261 COG0357 GidB Predicted S-adeno 97.4 0.0022 4.8E-08 67.7 13.0 141 896-1048 68-209 (215)
262 PRK11760 putative 23S rRNA C24 97.4 0.0015 3.2E-08 73.0 12.1 127 893-1032 209-340 (357)
263 KOG4300 Predicted methyltransf 97.3 0.0015 3.2E-08 66.9 9.9 102 898-1002 79-187 (252)
264 PHA01634 hypothetical protein 97.3 0.00094 2E-08 62.9 7.6 100 894-1001 27-128 (156)
265 COG2384 Predicted SAM-dependen 97.2 0.0051 1.1E-07 64.2 13.6 127 888-1026 9-138 (226)
266 COG0270 Dcm Site-specific DNA 97.2 0.00099 2.2E-08 76.0 9.1 120 897-1029 4-145 (328)
267 PRK01544 bifunctional N5-gluta 97.2 0.0015 3.3E-08 78.7 11.1 103 895-1000 347-465 (506)
268 TIGR00675 dcm DNA-methyltransf 97.2 0.0019 4E-08 73.4 10.9 122 899-1030 1-139 (315)
269 PF05971 Methyltransf_10: Prot 97.1 0.0028 6.2E-08 70.1 11.2 78 896-975 103-188 (299)
270 KOG2899 Predicted methyltransf 97.1 0.0022 4.8E-08 67.3 9.4 62 880-941 42-104 (288)
271 KOG3010 Methyltransferase [Gen 97.1 0.0015 3.3E-08 68.6 8.2 100 898-999 36-139 (261)
272 COG4262 Predicted spermidine s 97.1 0.0031 6.6E-08 69.6 10.6 126 893-1025 287-430 (508)
273 COG0421 SpeE Spermidine syntha 97.1 0.0085 1.8E-07 66.3 14.3 99 897-996 78-189 (282)
274 KOG1661 Protein-L-isoaspartate 97.1 0.003 6.4E-08 65.1 9.8 101 892-994 79-191 (237)
275 PRK04148 hypothetical protein; 97.1 0.0046 9.9E-08 60.3 10.6 96 895-1002 16-114 (134)
276 KOG0820 Ribosomal RNA adenine 97.1 0.0017 3.7E-08 69.2 8.0 79 892-974 55-133 (315)
277 PF12147 Methyltransf_20: Puta 97.0 0.0095 2E-07 64.8 13.6 102 895-997 135-249 (311)
278 KOG2198 tRNA cytosine-5-methyl 97.0 0.0064 1.4E-07 68.1 12.6 107 893-1002 153-301 (375)
279 PF01269 Fibrillarin: Fibrilla 97.0 0.014 3E-07 61.4 13.8 143 878-1025 51-206 (229)
280 PF06962 rRNA_methylase: Putat 96.9 0.0089 1.9E-07 58.6 11.4 109 921-1036 1-126 (140)
281 PF08123 DOT1: Histone methyla 96.9 0.0035 7.7E-08 66.2 9.3 80 893-972 40-131 (205)
282 PRK10458 DNA cytosine methylas 96.9 0.0061 1.3E-07 72.2 12.0 124 897-1026 89-254 (467)
283 PF00398 RrnaAD: Ribosomal RNA 96.7 0.0033 7.2E-08 69.4 7.7 101 893-1001 28-134 (262)
284 COG4976 Predicted methyltransf 96.7 0.0012 2.5E-08 68.7 3.3 122 896-1026 126-260 (287)
285 KOG2361 Predicted methyltransf 96.7 0.013 2.9E-07 61.8 10.9 152 898-1053 74-259 (264)
286 PF13360 PQQ_2: PQQ-like domai 96.7 1.3 2.7E-05 47.6 27.2 179 320-534 3-199 (238)
287 COG0293 FtsJ 23S rRNA methylas 96.6 0.024 5.2E-07 59.2 12.5 98 892-1002 42-164 (205)
288 PF13360 PQQ_2: PQQ-like domai 96.6 0.84 1.8E-05 49.0 25.3 182 303-531 38-233 (238)
289 PF01728 FtsJ: FtsJ-like methy 96.6 0.0058 1.3E-07 63.5 7.9 92 895-1000 23-142 (181)
290 PF13578 Methyltransf_24: Meth 96.6 0.0013 2.8E-08 61.8 2.7 96 900-998 1-106 (106)
291 KOG2671 Putative RNA methylase 96.6 0.0034 7.3E-08 68.9 5.8 81 892-975 205-295 (421)
292 KOG2055 WD40 repeat protein [G 96.5 0.14 2.9E-06 58.4 18.0 242 208-481 121-377 (514)
293 PLN02232 ubiquinone biosynthes 96.5 0.0082 1.8E-07 61.1 8.0 78 923-1001 1-85 (160)
294 COG1189 Predicted rRNA methyla 96.5 0.013 2.7E-07 62.1 9.4 127 892-1025 76-218 (245)
295 PF13679 Methyltransf_32: Meth 96.4 0.0089 1.9E-07 59.5 7.4 105 894-1000 24-136 (141)
296 PRK11138 outer membrane biogen 96.3 0.9 2E-05 53.4 25.2 199 320-563 170-385 (394)
297 PF05891 Methyltransf_PK: AdoM 96.2 0.0077 1.7E-07 63.2 6.0 127 896-1025 56-195 (218)
298 PRK11138 outer membrane biogen 96.2 1.2 2.6E-05 52.3 25.3 212 303-563 71-303 (394)
299 PF03291 Pox_MCEL: mRNA cappin 96.2 0.018 4E-07 65.4 9.4 102 895-998 62-187 (331)
300 COG1889 NOP1 Fibrillarin-like 96.2 0.14 3.1E-06 52.7 14.5 147 893-1049 74-228 (231)
301 PF11599 AviRa: RRNA methyltra 96.1 0.022 4.9E-07 58.9 8.4 102 895-997 51-214 (246)
302 PRK00536 speE spermidine synth 96.1 0.29 6.3E-06 53.7 17.4 131 864-1001 38-175 (262)
303 COG3963 Phospholipid N-methylt 96.0 0.051 1.1E-06 54.2 10.1 106 888-1002 39-161 (194)
304 COG0286 HsdM Type I restrictio 95.9 0.019 4.1E-07 69.1 8.4 99 877-976 168-276 (489)
305 PF01555 N6_N4_Mtase: DNA meth 95.9 0.012 2.7E-07 63.0 6.1 43 893-937 189-231 (231)
306 KOG1541 Predicted protein carb 95.9 0.082 1.8E-06 55.1 11.5 130 880-1025 33-181 (270)
307 KOG1501 Arginine N-methyltrans 95.9 0.014 2.9E-07 65.9 6.3 93 898-991 69-169 (636)
308 KOG4058 Uncharacterized conser 95.9 0.035 7.5E-07 53.9 8.2 101 897-999 74-174 (199)
309 TIGR03300 assembly_YfgL outer 95.9 2.2 4.7E-05 49.7 25.1 203 320-565 155-372 (377)
310 PF05148 Methyltransf_8: Hypot 95.7 0.098 2.1E-06 54.6 11.1 124 894-1053 71-198 (219)
311 PRK13699 putative methylase; P 95.6 0.026 5.7E-07 60.8 6.9 49 892-942 160-208 (227)
312 TIGR00006 S-adenosyl-methyltra 95.6 0.055 1.2E-06 60.5 9.5 91 880-973 6-102 (305)
313 PRK11524 putative methyltransf 95.6 0.023 5E-07 63.6 6.7 52 888-941 200-252 (284)
314 COG1568 Predicted methyltransf 95.6 0.062 1.3E-06 57.6 9.3 109 896-1007 153-268 (354)
315 PF07893 DUF1668: Protein of u 95.5 0.85 1.8E-05 52.5 19.4 116 352-485 75-214 (342)
316 TIGR03300 assembly_YfgL outer 95.2 4.5 9.8E-05 47.0 24.6 197 321-562 76-287 (377)
317 KOG1975 mRNA cap methyltransfe 95.0 0.054 1.2E-06 59.4 7.1 118 891-1018 113-250 (389)
318 PF12768 Rax2: Cortical protei 94.7 1.8 3.9E-05 48.2 18.0 112 368-487 14-130 (281)
319 PF07091 FmrO: Ribosomal RNA m 94.2 0.16 3.5E-06 54.6 8.2 76 892-969 102-177 (251)
320 PF04445 SAM_MT: Putative SAM- 94.1 0.16 3.5E-06 54.4 8.0 77 894-972 72-160 (234)
321 PF07893 DUF1668: Protein of u 94.1 1.6 3.6E-05 50.1 16.8 116 303-437 78-216 (342)
322 PF06080 DUF938: Protein of un 94.1 0.23 5.1E-06 52.0 8.9 132 894-1026 23-187 (204)
323 PRK10611 chemotaxis methyltran 93.5 0.12 2.6E-06 57.5 6.0 100 897-997 117-262 (287)
324 PF12768 Rax2: Cortical protei 93.5 1.9 4E-05 48.0 15.2 112 418-537 14-130 (281)
325 KOG3045 Predicted RNA methylas 93.4 0.8 1.7E-05 49.0 11.3 104 893-1025 178-285 (325)
326 KOG4589 Cell division protein 93.3 0.12 2.6E-06 52.5 4.8 97 893-1002 67-189 (232)
327 TIGR02800 propeller_TolB tol-p 93.2 12 0.00026 44.0 22.9 147 320-485 214-361 (417)
328 PF05219 DREV: DREV methyltran 93.1 0.54 1.2E-05 50.9 9.9 88 895-995 94-186 (265)
329 PRK05137 tolB translocation pr 93.1 16 0.00035 43.5 23.7 192 320-536 226-420 (435)
330 PF03059 NAS: Nicotianamine sy 93.0 0.75 1.6E-05 50.8 11.0 99 897-996 122-229 (276)
331 KOG0310 Conserved WD40 repeat- 93.0 6.3 0.00014 45.8 18.5 230 285-565 64-301 (487)
332 cd00216 PQQ_DH Dehydrogenases 92.8 29 0.00062 42.1 25.8 169 368-560 254-454 (488)
333 KOG3115 Methyltransferase-like 92.7 0.38 8.2E-06 49.6 7.5 103 897-1001 62-187 (249)
334 PRK04792 tolB translocation pr 92.1 22 0.00047 42.6 23.0 148 370-537 242-391 (448)
335 KOG2055 WD40 repeat protein [G 92.0 2.3 5E-05 48.9 13.3 149 355-531 226-377 (514)
336 COG1064 AdhP Zn-dependent alco 91.9 0.91 2E-05 51.5 10.1 96 892-1000 163-262 (339)
337 PF01795 Methyltransf_5: MraW 91.8 0.25 5.5E-06 55.2 5.6 93 880-976 6-105 (310)
338 KOG0822 Protein kinase inhibit 91.8 0.22 4.7E-06 58.2 5.1 100 897-998 369-479 (649)
339 PTZ00357 methyltransferase; Pr 91.8 0.49 1.1E-05 56.8 8.0 90 898-987 703-822 (1072)
340 TIGR03866 PQQ_ABC_repeats PQQ- 91.7 23 0.00051 38.7 22.8 184 303-532 2-191 (300)
341 PRK04792 tolB translocation pr 91.6 25 0.00053 42.2 22.7 146 320-485 242-389 (448)
342 KOG0024 Sorbitol dehydrogenase 91.5 1.1 2.3E-05 49.9 9.9 109 886-1002 160-278 (354)
343 PRK00178 tolB translocation pr 91.5 27 0.00058 41.4 22.9 182 320-530 223-408 (430)
344 PF01739 CheR: CheR methyltran 91.3 0.2 4.4E-06 52.6 4.0 103 897-1000 33-178 (196)
345 PRK04043 tolB translocation pr 91.2 33 0.00072 40.7 22.9 189 320-536 213-408 (419)
346 PRK04922 tolB translocation pr 91.2 33 0.00071 40.8 23.2 190 319-535 227-418 (433)
347 cd00216 PQQ_DH Dehydrogenases 91.2 28 0.0006 42.3 22.7 117 303-436 63-193 (488)
348 TIGR02800 propeller_TolB tol-p 91.0 26 0.00057 41.1 22.2 146 370-536 214-362 (417)
349 cd00094 HX Hemopexin-like repe 90.4 17 0.00036 38.2 17.5 152 348-531 11-178 (194)
350 PF08450 SGL: SMP-30/Gluconola 90.2 30 0.00066 37.4 26.3 199 302-538 12-223 (246)
351 PRK04922 tolB translocation pr 90.0 48 0.001 39.4 23.2 148 369-536 227-376 (433)
352 KOG1269 SAM-dependent methyltr 90.0 0.46 9.9E-06 54.7 5.6 107 893-1001 108-219 (364)
353 PRK00178 tolB translocation pr 89.9 48 0.001 39.2 24.3 146 370-537 223-372 (430)
354 COG0500 SmtA SAM-dependent met 89.8 3.2 7E-05 40.1 11.1 101 899-1002 52-160 (257)
355 PRK13684 Ycf48-like protein; P 89.7 43 0.00094 38.4 23.6 200 329-565 118-324 (334)
356 PF09243 Rsm22: Mitochondrial 89.4 4.1 8.9E-05 45.3 12.5 122 895-1024 33-161 (274)
357 PF03141 Methyltransf_29: Puta 88.9 1.3 2.8E-05 52.2 8.3 151 865-1023 81-245 (506)
358 COG2961 ComJ Protein involved 88.9 4.9 0.00011 43.1 11.6 116 893-1024 87-215 (279)
359 COG4798 Predicted methyltransf 88.7 0.92 2E-05 46.6 6.0 134 893-1027 46-201 (238)
360 PF02191 OLF: Olfactomedin-lik 88.7 21 0.00045 39.1 17.1 188 300-511 29-237 (250)
361 TIGR00497 hsdM type I restrict 88.7 1.3 2.7E-05 53.9 8.5 100 875-975 195-304 (501)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.6 63 0.0014 39.6 23.0 108 320-436 79-199 (527)
363 TIGR03439 methyl_EasF probable 88.4 18 0.00039 41.1 16.8 71 888-958 69-144 (319)
364 COG1063 Tdh Threonine dehydrog 88.3 1.2 2.7E-05 51.4 7.7 102 894-1002 167-274 (350)
365 PF07279 DUF1442: Protein of u 88.2 7.5 0.00016 41.0 12.4 101 895-997 41-149 (218)
366 PF00107 ADH_zinc_N: Zinc-bind 88.1 0.75 1.6E-05 44.5 4.9 85 905-1000 1-92 (130)
367 PRK05137 tolB translocation pr 87.9 52 0.0011 39.1 21.5 146 370-536 226-374 (435)
368 PF05096 Glu_cyclase_2: Glutam 87.7 43 0.00093 36.8 18.3 161 345-534 46-209 (264)
369 PRK13684 Ycf48-like protein; P 87.5 59 0.0013 37.3 27.1 199 329-564 75-280 (334)
370 KOG3924 Putative protein methy 87.1 1.4 3.1E-05 50.1 6.8 115 883-997 178-308 (419)
371 PRK09880 L-idonate 5-dehydroge 87.0 4 8.6E-05 46.9 10.9 99 895-1000 169-269 (343)
372 PF04378 RsmJ: Ribosomal RNA s 86.8 1.3 2.7E-05 48.1 6.1 95 900-1000 62-168 (245)
373 PRK03629 tolB translocation pr 86.7 76 0.0017 37.7 22.6 191 320-535 223-413 (429)
374 cd00094 HX Hemopexin-like repe 86.3 37 0.00081 35.5 16.9 105 354-481 63-178 (194)
375 COG3129 Predicted SAM-dependen 86.2 1.8 4E-05 45.6 6.6 75 895-974 78-163 (292)
376 PF10354 DUF2431: Domain of un 86.0 5.6 0.00012 40.7 10.1 111 907-1026 8-147 (166)
377 PF05096 Glu_cyclase_2: Glutam 85.9 28 0.00061 38.2 15.8 108 403-532 54-161 (264)
378 KOG1709 Guanidinoacetate methy 85.9 4.7 0.0001 42.3 9.3 102 893-998 99-207 (271)
379 PF02086 MethyltransfD12: D12 85.4 0.89 1.9E-05 49.9 4.3 47 888-936 11-59 (260)
380 PF07942 N2227: N2227-like pro 85.3 10 0.00022 41.9 12.3 45 895-943 56-100 (270)
381 KOG1596 Fibrillarin and relate 85.0 5.6 0.00012 42.3 9.5 99 893-996 154-260 (317)
382 cd00200 WD40 WD40 domain, foun 84.6 57 0.0012 34.4 24.6 184 303-531 64-252 (289)
383 PLN00033 photosystem II stabil 84.6 91 0.002 36.7 25.4 198 329-563 165-390 (398)
384 COG1520 FOG: WD40-like repeat 84.6 86 0.0019 36.4 21.0 139 321-484 79-225 (370)
385 KOG3201 Uncharacterized conser 84.3 1.9 4.2E-05 43.0 5.4 124 895-1026 29-161 (201)
386 cd00200 WD40 WD40 domain, foun 84.3 59 0.0013 34.3 23.9 185 303-532 22-211 (289)
387 COG0275 Predicted S-adenosylme 84.2 3.3 7.1E-05 45.9 7.7 77 893-971 21-104 (314)
388 PRK02889 tolB translocation pr 84.1 87 0.0019 37.2 20.7 147 370-536 220-368 (427)
389 KOG2912 Predicted DNA methylas 83.9 0.75 1.6E-05 50.5 2.7 78 900-982 107-196 (419)
390 PF08268 FBA_3: F-box associat 83.4 10 0.00023 36.8 10.4 85 451-536 2-88 (129)
391 PF08450 SGL: SMP-30/Gluconola 82.9 74 0.0016 34.3 21.1 147 353-530 11-166 (246)
392 COG1743 Adenine-specific DNA m 82.9 0.9 1.9E-05 55.6 3.0 47 894-942 89-135 (875)
393 PRK13699 putative methylase; P 81.9 3.9 8.4E-05 44.2 7.3 67 948-1026 2-91 (227)
394 PRK02889 tolB translocation pr 81.8 1.2E+02 0.0026 36.0 22.7 182 320-529 220-404 (427)
395 PF08268 FBA_3: F-box associat 81.8 35 0.00075 33.1 13.4 85 402-487 3-89 (129)
396 PRK03629 tolB translocation pr 81.7 1.2E+02 0.0026 36.0 24.3 149 370-537 223-372 (429)
397 COG0863 DNA modification methy 81.5 2.7 5.8E-05 47.2 6.2 61 880-943 208-268 (302)
398 cd08283 FDH_like_1 Glutathione 80.9 8 0.00017 45.2 10.2 101 893-998 182-307 (386)
399 PF05050 Methyltransf_21: Meth 80.9 2.8 6E-05 42.2 5.5 53 901-953 1-59 (167)
400 PF12217 End_beta_propel: Cata 80.2 61 0.0013 35.1 14.9 168 289-464 138-334 (367)
401 PRK10309 galactitol-1-phosphat 80.0 5.6 0.00012 45.6 8.3 99 893-1000 158-263 (347)
402 TIGR01202 bchC 2-desacetyl-2-h 80.0 8.2 0.00018 43.6 9.5 90 895-1000 144-234 (308)
403 COG1352 CheR Methylase of chem 79.2 7.2 0.00016 43.0 8.3 103 896-999 97-243 (268)
404 PLN00181 protein SPA1-RELATED; 79.1 2.1E+02 0.0045 37.1 24.3 140 354-529 545-691 (793)
405 cd08237 ribitol-5-phosphate_DH 78.8 10 0.00022 43.6 9.9 94 893-999 161-258 (341)
406 PF02897 Peptidase_S9_N: Proly 78.7 1.4E+02 0.0031 35.0 24.1 199 319-537 149-367 (414)
407 TIGR03451 mycoS_dep_FDH mycoth 78.6 9.8 0.00021 43.9 9.8 100 893-999 174-278 (358)
408 TIGR03866 PQQ_ABC_repeats PQQ- 77.7 1.1E+02 0.0024 33.2 26.7 189 302-531 43-240 (300)
409 PRK09424 pntA NAD(P) transhydr 77.4 17 0.00038 43.9 11.5 99 894-999 163-287 (509)
410 PRK04043 tolB translocation pr 77.4 1.6E+02 0.0035 34.9 23.0 150 370-537 213-366 (419)
411 KOG2940 Predicted methyltransf 77.2 3.4 7.5E-05 43.5 4.7 74 894-971 71-145 (325)
412 KOG1562 Spermidine synthase [A 77.2 29 0.00063 38.4 11.8 126 894-1025 120-259 (337)
413 PRK11524 putative methyltransf 76.3 3.2 6.9E-05 46.5 4.6 50 947-998 8-81 (284)
414 PRK01747 mnmC bifunctional tRN 76.0 12 0.00025 47.4 10.1 115 897-1025 59-221 (662)
415 PF09910 DUF2139: Uncharacteri 75.6 1.4E+02 0.003 33.3 19.5 162 347-528 40-230 (339)
416 COG4946 Uncharacterized protei 75.2 1.8E+02 0.0039 34.3 26.7 186 320-538 287-487 (668)
417 COG1062 AdhC Zn-dependent alco 75.1 5.5 0.00012 44.8 5.9 99 892-1000 182-288 (366)
418 KOG0310 Conserved WD40 repeat- 74.6 1.7E+02 0.0036 34.6 17.5 128 352-515 164-301 (487)
419 cd08281 liver_ADH_like1 Zinc-d 74.6 14 0.00031 42.9 9.7 97 893-999 189-292 (371)
420 PRK01742 tolB translocation pr 74.3 1.9E+02 0.0042 34.3 20.9 137 320-485 228-368 (429)
421 PF10282 Lactonase: Lactonase, 74.1 1.7E+02 0.0037 33.6 23.9 234 301-563 48-312 (345)
422 PF02897 Peptidase_S9_N: Proly 73.9 1.9E+02 0.0041 34.0 21.5 191 319-536 201-412 (414)
423 PF03178 CPSF_A: CPSF A subuni 73.6 1E+02 0.0023 34.8 16.3 138 354-512 42-190 (321)
424 PTZ00421 coronin; Provisional 73.2 2.2E+02 0.0049 34.5 22.5 154 354-535 138-297 (493)
425 TIGR02822 adh_fam_2 zinc-bindi 72.7 23 0.00049 40.4 10.6 94 892-999 162-256 (329)
426 KOG1099 SAM-dependent methyltr 72.5 4.5 9.9E-05 42.7 4.2 94 895-1001 41-167 (294)
427 KOG3178 Hydroxyindole-O-methyl 72.4 14 0.0003 41.9 8.3 95 896-1000 178-278 (342)
428 PF14870 PSII_BNR: Photosynthe 72.3 1.8E+02 0.0038 33.0 24.1 241 269-565 5-254 (302)
429 PRK11028 6-phosphogluconolacto 71.8 1.8E+02 0.0039 32.8 24.3 192 320-537 57-269 (330)
430 PTZ00421 coronin; Provisional 71.6 2.2E+02 0.0047 34.7 19.0 63 405-481 138-201 (493)
431 PF09910 DUF2139: Uncharacteri 71.5 1.5E+02 0.0033 33.0 15.5 134 419-563 77-222 (339)
432 KOG2651 rRNA adenine N-6-methy 70.9 8.6 0.00019 43.7 6.1 54 883-937 135-194 (476)
433 PLN02740 Alcohol dehydrogenase 69.9 29 0.00062 40.5 10.9 99 892-999 195-302 (381)
434 PF05430 Methyltransf_30: S-ad 69.5 9.4 0.0002 37.0 5.5 77 947-1045 32-117 (124)
435 KOG0649 WD40 repeat protein [G 69.1 1.7E+02 0.0038 31.6 14.8 154 331-511 100-263 (325)
436 PLN00181 protein SPA1-RELATED; 68.8 3.5E+02 0.0076 35.0 24.4 143 353-529 587-739 (793)
437 cd08230 glucose_DH Glucose deh 68.8 29 0.00063 39.9 10.5 98 894-1000 171-272 (355)
438 PRK01742 tolB translocation pr 68.6 2.5E+02 0.0055 33.3 23.0 140 370-536 228-369 (429)
439 PF04989 CmcI: Cephalosporin h 68.2 17 0.00036 38.5 7.4 132 888-1024 26-182 (206)
440 COG4257 Vgb Streptogramin lyas 68.0 2E+02 0.0043 31.8 16.1 185 321-538 125-315 (353)
441 PF14583 Pectate_lyase22: Olig 67.7 2.3E+02 0.0051 33.0 16.9 231 303-563 48-302 (386)
442 cd08239 THR_DH_like L-threonin 67.3 18 0.00039 41.2 8.3 100 893-999 161-264 (339)
443 TIGR03366 HpnZ_proposed putati 66.5 30 0.00066 38.3 9.7 97 894-998 119-219 (280)
444 KOG0022 Alcohol dehydrogenase, 66.4 10 0.00023 42.1 5.6 46 892-937 189-235 (375)
445 PF02191 OLF: Olfactomedin-lik 66.2 2.1E+02 0.0045 31.4 19.7 189 353-563 30-239 (250)
446 COG1748 LYS9 Saccharopine dehy 66.2 22 0.00048 41.3 8.5 111 898-1025 3-118 (389)
447 KOG2793 Putative N2,N2-dimethy 65.4 38 0.00083 36.9 9.6 104 895-1000 86-202 (248)
448 KOG0919 C-5 cytosine-specific 65.4 4.4 9.6E-05 42.9 2.4 70 898-971 5-77 (338)
449 smart00284 OLF Olfactomedin-li 65.1 2.2E+02 0.0048 31.3 19.9 185 302-511 35-242 (255)
450 cd08254 hydroxyacyl_CoA_DH 6-h 64.9 41 0.00089 37.9 10.6 97 893-998 163-264 (338)
451 PF03178 CPSF_A: CPSF A subuni 64.8 1.3E+02 0.0027 34.1 14.5 140 302-462 42-190 (321)
452 KOG0649 WD40 repeat protein [G 64.7 1.9E+02 0.0041 31.3 14.0 131 302-461 127-263 (325)
453 TIGR03075 PQQ_enz_alc_DH PQQ-d 64.6 1.1E+02 0.0024 37.5 14.6 122 348-484 64-197 (527)
454 COG0604 Qor NADPH:quinone redu 64.5 32 0.00068 39.4 9.4 99 893-1000 140-244 (326)
455 PF11968 DUF3321: Putative met 64.2 33 0.00071 36.5 8.5 101 897-1025 53-175 (219)
456 KOG0315 G-protein beta subunit 64.2 2.2E+02 0.0048 31.0 20.5 210 321-564 62-279 (311)
457 COG0677 WecC UDP-N-acetyl-D-ma 62.7 32 0.0007 39.7 8.7 32 905-936 16-49 (436)
458 PLN02827 Alcohol dehydrogenase 62.7 35 0.00075 39.8 9.6 99 893-999 191-297 (378)
459 cd05278 FDH_like Formaldehyde 62.1 22 0.00047 40.5 7.7 97 893-997 165-267 (347)
460 PLN03154 putative allyl alcoho 61.5 38 0.00082 38.9 9.6 98 893-999 156-260 (348)
461 cd08293 PTGR2 Prostaglandin re 61.4 35 0.00076 38.8 9.3 97 893-997 150-254 (345)
462 PF10282 Lactonase: Lactonase, 61.3 3E+02 0.0064 31.5 24.9 232 306-563 3-265 (345)
463 PLN02819 lysine-ketoglutarate 61.1 29 0.00063 45.6 9.1 126 895-1045 568-711 (1042)
464 TIGR03201 dearomat_had 6-hydro 60.5 55 0.0012 37.5 10.6 101 893-1000 164-275 (349)
465 TIGR02818 adh_III_F_hyde S-(hy 60.0 62 0.0013 37.5 11.1 101 893-999 183-289 (368)
466 COG2933 Predicted SAM-dependen 59.5 58 0.0012 35.5 9.3 125 893-1029 209-337 (358)
467 cd05188 MDR Medium chain reduc 59.4 30 0.00066 37.3 7.9 100 893-1000 132-235 (271)
468 PF01234 NNMT_PNMT_TEMT: NNMT/ 58.8 15 0.00032 40.4 5.1 130 894-1025 55-233 (256)
469 COG4257 Vgb Streptogramin lyas 58.4 3E+02 0.0064 30.6 15.9 186 321-542 84-276 (353)
470 PF14870 PSII_BNR: Photosynthe 57.3 3.3E+02 0.0072 30.8 22.1 198 328-563 89-295 (302)
471 KOG4174 Uncharacterized conser 56.8 47 0.001 36.0 8.1 140 895-1045 56-228 (282)
472 COG1520 FOG: WD40-like repeat 56.5 3.7E+02 0.008 31.1 22.4 184 321-527 122-319 (370)
473 TIGR02819 fdhA_non_GSH formald 56.2 74 0.0016 37.4 10.9 100 893-999 183-301 (393)
474 KOG2321 WD40 repeat protein [G 54.9 2.3E+02 0.0049 34.3 13.9 153 300-481 62-261 (703)
475 cd08238 sorbose_phosphate_red 54.8 76 0.0017 37.4 10.8 101 893-997 173-289 (410)
476 PLN03215 ascorbic acid mannose 54.6 2.9E+02 0.0062 32.2 14.7 99 379-489 189-305 (373)
477 PF05711 TylF: Macrocin-O-meth 53.3 53 0.0011 35.9 8.2 88 930-1027 140-234 (248)
478 PRK11028 6-phosphogluconolacto 53.2 3.8E+02 0.0081 30.2 23.6 196 303-535 3-214 (330)
479 TIGR02825 B4_12hDH leukotriene 52.9 74 0.0016 35.9 10.0 97 892-998 135-238 (325)
480 KOG3987 Uncharacterized conser 52.0 5.1 0.00011 41.6 0.2 41 895-937 112-152 (288)
481 cd08277 liver_alcohol_DH_like 51.8 1E+02 0.0022 35.6 11.0 99 893-999 182-288 (365)
482 cd08300 alcohol_DH_class_III c 51.5 1.1E+02 0.0024 35.3 11.3 101 892-999 183-290 (368)
483 cd08285 NADP_ADH NADP(H)-depen 51.2 1E+02 0.0023 35.1 10.9 99 893-999 164-268 (351)
484 PF02254 TrkA_N: TrkA-N domain 51.0 39 0.00084 31.7 6.1 71 902-981 2-79 (116)
485 PTZ00420 coronin; Provisional 50.7 5.8E+02 0.013 31.6 21.1 152 354-535 138-300 (568)
486 cd08294 leukotriene_B4_DH_like 50.5 70 0.0015 36.0 9.3 95 893-997 141-241 (329)
487 cd08301 alcohol_DH_plants Plan 49.2 1.1E+02 0.0023 35.4 10.7 101 893-1000 185-292 (369)
488 cd08295 double_bond_reductase_ 49.0 83 0.0018 35.8 9.6 98 892-998 148-252 (338)
489 TIGR03074 PQQ_membr_DH membran 48.8 7.1E+02 0.015 32.1 23.1 37 398-435 310-353 (764)
490 PLN02919 haloacid dehalogenase 48.5 8.3E+02 0.018 32.8 27.7 210 290-531 627-891 (1057)
491 KOG0646 WD40 repeat protein [G 47.6 4.2E+02 0.0091 31.3 14.3 57 290-364 85-145 (476)
492 COG4880 Secreted protein conta 46.8 3.5E+02 0.0075 31.7 13.3 187 316-536 402-598 (603)
493 KOG1201 Hydroxysteroid 17-beta 45.9 53 0.0011 36.6 6.8 60 894-958 36-98 (300)
494 COG3392 Adenine-specific DNA m 45.8 14 0.0003 39.9 2.3 36 893-930 25-60 (330)
495 PLN03209 translocon at the inn 45.8 3.8E+02 0.0083 33.1 14.7 77 894-971 78-167 (576)
496 KOG2920 Predicted methyltransf 45.7 14 0.00031 40.7 2.4 42 891-933 112-153 (282)
497 PTZ00420 coronin; Provisional 45.4 6.9E+02 0.015 31.0 19.6 105 406-529 139-249 (568)
498 cd08236 sugar_DH NAD(P)-depend 43.8 78 0.0017 35.9 8.3 97 893-997 157-258 (343)
499 KOG2352 Predicted spermine/spe 43.5 33 0.00071 40.7 5.0 106 898-1004 298-423 (482)
500 cd08232 idonate-5-DH L-idonate 42.1 1.6E+02 0.0034 33.3 10.5 93 895-997 165-262 (339)
No 1
>KOG1228 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-61 Score=471.33 Aligned_cols=201 Identities=45% Similarity=0.816 Sum_probs=182.8
Q ss_pred ccccHHHHHHHHHHhccCCCCCCCCCCCCCCCcHHHHHHHhcCCCeEEecCccceeEEeecCCC----CCCCcEEEEEEc
Q 036185 37 ENMSFEQRKAATLASLSSSATDKSPKGTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHPVN----KPKGGTWLFITH 112 (1057)
Q Consensus 37 ~~~~f~~~k~~~l~~l~~~~~d~s~~g~vD~~i~~l~~~in~~~~~~TtSSCsGRi~~~~~~~~----~~~~~~~l~~~H 112 (1057)
++|+|+++|++||+.|.+..+|+||||+||++|+|||+.||.||+|||||||||||||++++.. |++||.||||+|
T Consensus 3 ~~~~Fek~Kaa~L~~i~Ssv~D~SpKG~~Depi~plld~IN~hpd~fTTSSCSGRIsvl~qg~N~~~~k~qgg~WLyVTH 82 (256)
T KOG1228|consen 3 RSAEFEKWKAAILNEIDSSVPDLSPKGSVDEPIVPLLDFINMHPDFFTTSSCSGRISVLDQGINGFEVKGQGGCWLYVTH 82 (256)
T ss_pred chhhHHHHHHHHHHhhcccCCCCCCCCCCCcchhHHHHHhhcCCceEEcccccceEEEEeeccCcccccCCCceEEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999865 566899999999
Q ss_pred cCCChhhHHhhhcCCCCCCCCC--CCCceEEEEEcCcEEEEEeCCHHHHHHHHHHHHHcCccccCccccC-CceEEEEec
Q 036185 113 DPADVDSVLSLLFFPTHTTPSS--PTRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSVK-KRVIVGIRC 189 (1057)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ep~ilhv~~~~~~~a~~ll~~a~~~Gfr~Sgi~~~~-~~~~v~ir~ 189 (1057)
++.-.+|+..+|..+...++.. .+.+.+.||||||||||+||||.+||.|+++|++||||||||++++ +++|||||+
T Consensus 83 d~~a~ddl~~~lef~~~sgkippv~g~rei~ykfEP~IlhVqcrdlq~Aq~L~~~Ais~GFReSGIt~~~~~k~ivAIR~ 162 (256)
T KOG1228|consen 83 DLCAKDDLIVALEFAELSGKIPPVNGIREITYKFEPFILHVQCRDLQDAQILHSMAISCGFRESGITVGKRGKTIVAIRS 162 (256)
T ss_pred ccchhcccchhhhhHHhhCCCCCCCCchhheeeccceEEEEehhhhhhHHHHHHHHHhcCccccccccccCCcEEEEEEe
Confidence 9987777776654332222211 1246999999999999999999999999999999999999999987 789999999
Q ss_pred cceeeeeeccCCceecCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 036185 190 SLRLEVPLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNF 237 (1057)
Q Consensus 190 ~~~l~~pl~~~~~~~v~~~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~ 237 (1057)
+++||+||+..++++|++||+.+|+++||++|.+|++||+||++++++
T Consensus 163 sirleVPlg~s~kLmVTpEYv~fL~~~anekmdeN~krm~~L~~~ler 210 (256)
T KOG1228|consen 163 SIRLEVPLGHSGKLMVTPEYVDFLLNVANEKMDENKKRMERLQHALER 210 (256)
T ss_pred eceeeeccCCCccEEecHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999875
No 2
>PRK04235 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-61 Score=490.39 Aligned_cols=191 Identities=38% Similarity=0.612 Sum_probs=178.5
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCCCCCCCCcHHHHHHHhcCCCeEEecCccceeEEeecCCC---CCCCcEEEEEEccC
Q 036185 38 NMSFEQRKAATLASLSSSATDKSPKGTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHPVN---KPKGGTWLFITHDP 114 (1057)
Q Consensus 38 ~~~f~~~k~~~l~~l~~~~~d~s~~g~vD~~i~~l~~~in~~~~~~TtSSCsGRi~~~~~~~~---~~~~~~~l~~~H~~ 114 (1057)
.|+|+++|+++|++|+. .||||+||++|+|||++||+|++|||||||||||+||+++.| ++++|+||||||+|
T Consensus 1 ~~~f~~~K~~~L~~L~~----~~~kG~VD~~i~~ll~~INs~~~~~TTSSCSGRIsv~~~~~p~~~~K~~g~wl~~~H~~ 76 (196)
T PRK04235 1 MMMWEERKREALERLER----ALEIGYVDEDIIPLLDLINSLKNYYTTSSCSGRIGIIEAEMPSKGDKKNSRWLGKWHHP 76 (196)
T ss_pred CchHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHHhCCCCeEEccCCcceEEEEeccCCCcCCCCCCEEEEEECCC
Confidence 37899999999999987 589999999999999999999999999999999999999555 34489999999999
Q ss_pred CChhhHHhhhcCCCCCCCCCCCCceEEEEEcCcEEEEEeCCHHHHHHHHHHHHHcCccccCccccC-CceEEEEecccee
Q 036185 115 ADVDSVLSLLFFPTHTTPSSPTRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSVK-KRVIVGIRCSLRL 193 (1057)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~ilhv~~~~~~~a~~ll~~a~~~Gfr~Sgi~~~~-~~~~v~ir~~~~l 193 (1057)
++.+|+.+++. . ...+.||||||||||||+|+|+++|++||++|++||||||||++.+ +++||||||+++|
T Consensus 77 ~~~~e~~~~~~-~-------~~~~~l~~k~ep~IlHV~c~~le~A~~Ll~~A~~~Gfr~SGI~s~~~~r~iV~Irs~~~l 148 (196)
T PRK04235 77 VTPEEVLEALK-K-------KQVGRLWLIVQGPILHVAARDLETAKKLLELAREAGFKHSGIKSISDKRVLVEIRTTERM 148 (196)
T ss_pred CCHHHHHHHhc-c-------cccceEEEEccCcEEEEeeCCHHHHHHHHHHHHHcCchhhcceecCCCcEEEEEecCCcE
Confidence 99999999987 2 1236899999999999999999999999999999999999999987 7999999999999
Q ss_pred eeeeccCCceecCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 036185 194 EVPLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNFMVG 240 (1057)
Q Consensus 194 ~~pl~~~~~~~v~~~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~~~~ 240 (1057)
|+||+..|+.+|+++||++|+++||++|.+|++||.||+++|++++.
T Consensus 149 d~Pl~~~g~~lV~~eyl~~Lv~~aN~kl~~n~~rl~rl~~~l~~~~~ 195 (196)
T PRK04235 149 DAPLGEDGKLVVDEEYLKFLVEVANEKLLRGKERLNRLEEELEELKE 195 (196)
T ss_pred EEEEecCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987653
No 3
>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2DVK_A 2IT3_B 2IT2_A 2DRV_A 2QG3_B.
Probab=100.00 E-value=8.4e-60 Score=488.43 Aligned_cols=198 Identities=54% Similarity=0.854 Sum_probs=162.6
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCcHHHHHHHhcCCCeEEecCccceeEEeecC-CCC--CCCcEEEEEEccCCChh
Q 036185 42 EQRKAATLASLSSSATDKSPKGTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHP-VNK--PKGGTWLFITHDPADVD 118 (1057)
Q Consensus 42 ~~~k~~~l~~l~~~~~d~s~~g~vD~~i~~l~~~in~~~~~~TtSSCsGRi~~~~~~-~~~--~~~~~~l~~~H~~~~~~ 118 (1057)
+++|+++|++|+++.+|+|+||+||++|+|||++||+|++|||||||||||+||+++ .++ ++||+||||||+|++.+
T Consensus 1 e~~K~~~L~~L~~~~~d~s~kG~VD~~i~~ll~~IN~~~~~~TTSSCSGRI~vf~~~~~~~~k~~~~~wl~~sH~~~~~~ 80 (205)
T PF02676_consen 1 EQRKAQILERLESNYPDKSPKGSVDEDIIPLLDLINSHPDYVTTSSCSGRISVFDEGEKPWDKKGGGKWLFVSHDPVTVE 80 (205)
T ss_dssp -HHHHHHHHHHH--HHHHHHTTHS-GGGHHHHHHHHCSTTEEEEEEES-EEEEEEE-SSTTSC-CC-EEEEEESS---HH
T ss_pred ChHHHHHHHHhhhhhhhccccCCCChhHHHHHHHHhCCCCeEEeccccceEEEEecccccccccCCCEEEEEECCCCCHH
Confidence 589999999999888999999999999999999999999999999999999999995 443 36899999999999999
Q ss_pred hHHhhhcCCCCCC--CCCCCCceEEEEEcCcEEEEEeCCHHHHHHHHHHHHHcCccccCccccC-CceEEEEeccceeee
Q 036185 119 SVLSLLFFPTHTT--PSSPTRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSVK-KRVIVGIRCSLRLEV 195 (1057)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~~~~ep~ilhv~~~~~~~a~~ll~~a~~~Gfr~Sgi~~~~-~~~~v~ir~~~~l~~ 195 (1057)
||.+++....... ......+.||||||||||||.|+|+++|++||++|++||||||||++++ +++||||||+++||+
T Consensus 81 ev~~~~~~~~~~~~~~~~~~~~~l~lkfep~IlHV~c~~l~~A~~Ll~~A~~aGFr~SGi~s~~~~~~iVaIrs~~~le~ 160 (205)
T PF02676_consen 81 EVLEALRKSDGDSASSQSSENRLLWLKFEPPILHVQCRDLESAQKLLKIARSAGFRESGITSLSSKRVIVAIRSSLRLEV 160 (205)
T ss_dssp HHHHHHTT-SSSE----------EEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TTEEEEEECTSCEEEEEE-S-EEEE
T ss_pred HHHHHHccccccccccccchhheEEEEecCcEEEEEeCCHHHHHHHHHHHHHhCccccCceeccCCceEEEEeccCcEeE
Confidence 9999987221110 0012346799999999999999999999999999999999999999999 999999999999999
Q ss_pred eeccCCceecCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 036185 196 PLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNFMV 239 (1057)
Q Consensus 196 pl~~~~~~~v~~~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~~~ 239 (1057)
||+..|+.+|+++||++|+++||++|.+|++||.||+++|++++
T Consensus 161 Pl~~~g~~lV~~~yL~~Lv~~aN~kl~~n~~rl~rl~~~l~~~~ 204 (205)
T PF02676_consen 161 PLGVDGKLLVSEEYLRFLVDIANEKLEENKKRLERLYEALEEAC 204 (205)
T ss_dssp EEEETTEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeeeCCeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998764
No 4
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-56 Score=440.60 Aligned_cols=190 Identities=45% Similarity=0.733 Sum_probs=179.3
Q ss_pred ccHHH-HHHHHHHhccCCCCCCCCCCCCCCCcHHHHHHHhcCCCeEEecCccceeEEeecCCCCCC-CcEEEEEEccCCC
Q 036185 39 MSFEQ-RKAATLASLSSSATDKSPKGTLDTPIIPLLNAINSHPNYYTTSSCSGRISIFSHPVNKPK-GGTWLFITHDPAD 116 (1057)
Q Consensus 39 ~~f~~-~k~~~l~~l~~~~~d~s~~g~vD~~i~~l~~~in~~~~~~TtSSCsGRi~~~~~~~~~~~-~~~~l~~~H~~~~ 116 (1057)
|.|++ +|+++|..|.+ +-++|+||++|+|||++||++++|||||||||||+|+++|.++.+ |++||||||+|++
T Consensus 1 M~~~~f~Kr~~L~~L~~----a~~~G~vD~diiplL~~INs~~~~~TTSSCSGRI~V~e~~~~g~k~gs~wl~K~H~~~~ 76 (208)
T COG1590 1 MGWEEFAKREALESLES----AIPKGYVDEDIIPLLDLINSIPNYYTTSSCSGRISVMEEPSPGDKPGSRWLGKWHRPIS 76 (208)
T ss_pred CchhHHHHHHHHHHHHH----HhhcCCCChhHHHHHHHhcCCCCeEEeccccceEEEEecccCCCCCCCEEEEEecCcCC
Confidence 66777 99999999988 359999999999999999999999999999999999999988554 7899999999999
Q ss_pred hhhHHhhhcCCCCCCCCCCCCceEEEEEcCcEEEEEeCCHHHHHHHHHHHHHcCccccCccccC-CceEEEEeccceeee
Q 036185 117 VDSVLSLLFFPTHTTPSSPTRDQLVFRFEPLIVAVECRDVESAEALVSIAVSSGLRESGVTSVK-KRVIVGIRCSLRLEV 195 (1057)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~ilhv~~~~~~~a~~ll~~a~~~Gfr~Sgi~~~~-~~~~v~ir~~~~l~~ 195 (1057)
.+||.+++. . ...+.+||+++||||||.|+|++.|++|+++|++||||||||.|.+ ++++|+|||++||++
T Consensus 77 ~~ev~ealk-~-------~~~~~iwl~~~ppIlHV~~r~~e~A~~L~~~a~~~GFK~SgI~sis~~r~iVEI~~~ermdv 148 (208)
T COG1590 77 LDEVLEALK-K-------AREGYIWLKVQPPILHVAARDLEAAKKLLNIARSCGFKHSGIKSISQKRVIVEIRGTERMDV 148 (208)
T ss_pred HHHHHHHHH-h-------cccceEEEEeeCCEEEEEeCcHHHHHHHHHHHHhcCCcccceeEecCCcEEEEEcccceeee
Confidence 999999998 2 1237899999999999999999999999999999999999999999 699999999999999
Q ss_pred eeccCCceecCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 036185 196 PLGESGNVLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNFMVG 240 (1057)
Q Consensus 196 pl~~~~~~~v~~~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~~~~ 240 (1057)
||+.+|+.+|+++|+++|++.||++|.+|++||.||+++|+++.+
T Consensus 149 pl~e~g~~~v~~eyl~~lv~~~n~~l~r~k~kl~rl~~~le~l~~ 193 (208)
T COG1590 149 PLGEDGKILVDDEYLKFLVEIANEKLRRGKEKLARLEERLEELVE 193 (208)
T ss_pred eecCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
No 5
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=7.1e-53 Score=463.77 Aligned_cols=334 Identities=29% Similarity=0.427 Sum_probs=274.0
Q ss_pred ccceehhhHHHHHHHHHHHHhcCcccccCcceeecCCcEEEeccchhhhhhhhhcccCCCCCccccccccCCCCCCCCcc
Q 036185 652 SHWVVELDKKYAKFGKDILKKFGWLHLGRKPHQQEDGKRICFPVTEKFCAIFQEKQLHSGGESEGLNTIDLSKPYTGGVL 731 (1057)
Q Consensus 652 ~~~~vkv~k~~ae~~k~~L~~~~~ld~~~ki~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1057)
.+.|++|+|+++|.+++.|+..|++|+++||.+++ .+++|||++.....
T Consensus 2 ~~~~vkv~k~~~e~~~~~L~~~gl~~~~~ki~~~~--~~~~iPv~~~~~~~----------------------------- 50 (341)
T COG2520 2 LMEFVKVPKRMAERIIRKLRAAGLLDKDYKIDRDG--DYLLIPVKDEANAI----------------------------- 50 (341)
T ss_pred CcceEEeehHHHHHHHHHHHhCCcccCCccccccC--CeEEEEeecccccc-----------------------------
Confidence 45789999999999999999999999999999754 59999998843210
Q ss_pred ccccchhhhhhhhhhcCceeccchhhhcccCCCChhHHHHHHHHHHHhcCCCchHHhhc-CCCceEEeCCEEEEccCCCC
Q 036185 732 LDETSCATALHFLKECGATKQMDEAVEVKRAPKSPFKAMTEAVASLIEQKGLSARLLEQ-LPSRWERLGDIVVLPVTSFK 810 (1057)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~-lp~~~d~~gdi~vl~~~~~~ 810 (1057)
++++..+..+.+ .+....+++++++. +++++++. +|++|+++||+++++++...
T Consensus 51 -----------------~~~v~~~~~~~~-------~~~~~~l~~~~~~~-~~~~~~~~~~p~~~~iiGdIai~~~~~e~ 105 (341)
T COG2520 51 -----------------LEVVVLEEEPVR-------RRSNENLKEILSDR-LPEEVLRELVPSSFDIIGDIAILSIPDEL 105 (341)
T ss_pred -----------------ceeEEecccccc-------cchhhHHHHHhhcc-chhhhhhhcCCcceEEEccEEEEeCCccc
Confidence 133332222110 01113455555443 34445554 89999999999999988553
Q ss_pred CchhhhHHhhHHHHHHhHcC-ccEEE-cccccCCCCccccceEEEeeCC-ceEEEEeCCEEEEEecceeEeeCCCHHHHH
Q 036185 811 DPVWDSIGGELWPAVAKILN-TSHLA-RQGRVAPTGTRDSALEILVGDN-GWVKHCENGILYSFDATKCMFSWGNLSEKL 887 (1057)
Q Consensus 811 ~~~~~~~~~~l~~~l~~~~~-~~~i~-~~~~i~~~~~r~~~~~~l~G~~-~~~~~~e~gi~~~~d~~~~~f~~~~~~er~ 887 (1057)
.+ +..++.+++.+.++ ++.++ +.++|. |++|.+.+++|+|+. +++.|+|||++|++|++++|||++|.+||.
T Consensus 106 ~~----~~~~i~~ai~~~~~~vk~V~~k~~~v~-G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~ 180 (341)
T COG2520 106 EP----YKREIAEAILRVHGKVKAVLLKEGPVA-GEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERA 180 (341)
T ss_pred ch----HHHHHHHHHHhhccCeeEEEEecCccC-CeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECCCchHHHH
Confidence 33 34556667777776 66555 444464 899999999999999 778899999999999999999999999999
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-CCccE
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-GVANR 966 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~ 966 (1057)
|++.++.+|++|+|||||+|+|||++|+ .|+..|+|+|+||+|+++|++|+++|++++.+++++||++++++. ..||+
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak-~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAK-KGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhh-cCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCE
Confidence 9999999999999999999999999994 454459999999999999999999999998899999999999986 78999
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
|+|+++++...+|..|+.+++ +||+||+|+++++.+.+. ...+++.+++.+.|++ +++...|+||+|||++||+
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k-~~g~iHyy~~~~e~~~~~---~~~~~i~~~~~~~~~~--~~v~~~r~VksysP~v~hv 333 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLK-DGGIIHYYEFVPEDDIEE---RPEKRIKSAARKGGYK--VEVLKVRRVKSYSPGVYHV 333 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhh-cCcEEEEEeccchhhccc---chHHHHHHHHhhccCc--ceEEEEEEecccCCCeeEE
Confidence 999996777999999999999 599999999999876532 3578888999988875 4677899999999999999
Q ss_pred EEEEEEe
Q 036185 1047 VADVGCR 1053 (1057)
Q Consensus 1047 ~~d~~~~ 1053 (1057)
|+|+++.
T Consensus 334 ~vd~~v~ 340 (341)
T COG2520 334 VVDLRVL 340 (341)
T ss_pred EEEEEec
Confidence 9999985
No 6
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=100.00 E-value=2.9e-47 Score=396.17 Aligned_cols=288 Identities=49% Similarity=0.810 Sum_probs=265.1
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCCch--HHhhcCCCceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHcCccEEEcc
Q 036185 760 KRAPKSPFKAMTEAVASLIEQKGLSA--RLLEQLPSRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQ 837 (1057)
Q Consensus 760 ~~~~~~~~~~~~~~l~~~l~~~~~~~--~~l~~lp~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~ 837 (1057)
+.++.+|..+|.+.+++++..++++. +++++||.+|++|||+++++.++|.++.|..+.+++|..+.+.+++.+++++
T Consensus 57 ~~~s~S~~ekm~~~v~~~~~~k~~~~~sEl~~~LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~r~ar~ 136 (351)
T KOG1227|consen 57 KHQSNSPTEKMKEDVKRHVLQKGLIFLSELQDDLPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVSRLARN 136 (351)
T ss_pred hhhccCcHHHHHHHHHHHHHhcCccchHhhhhhccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchhhhhhc
Confidence 45677899999999999999999864 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhC
Q 036185 838 GRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRA 917 (1057)
Q Consensus 838 ~~i~~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~ 917 (1057)
..|.+...|++.+++|+|+..|+.|++|||+|.||++++||+.+|..|+.|++...+.|++|+|||||+|||+++.+.++
T Consensus 137 ~~vs~~~~R~~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a 216 (351)
T KOG1227|consen 137 RLVSHLARRPPNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA 216 (351)
T ss_pred cccCccccCCCccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhcc
Confidence 99887778999999999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCChhHHHHHHHHhhCCCc-EEEEE
Q 036185 918 KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGG-TLHVH 996 (1057)
Q Consensus 918 ~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg-~l~~~ 996 (1057)
||+.|+|+|+||+|+|.+++|++.|++.+++.++.||.+...+...+|+|+|+++|++++.|..|+++|++.|| +||+|
T Consensus 217 gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 217 GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccccccccchHHHHHHhhhcCCcEEEEe
Confidence 99999999999999999999999999999999999999998888899999999999999999999999998888 99999
Q ss_pred cccccch-hHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEEEEEEe
Q 036185 997 GNVKDSE-EKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 1053 (1057)
Q Consensus 997 ~~~~~~~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~d~~~~ 1053 (1057)
++++.++ ...+.+.+-+.+.+++.+.+.. ...++|+|+|+++|+|+|..+.
T Consensus 297 enV~~s~~~~~~a~~v~kt~~~~~~k~~~~------~tN~iks~~~r~s~~~~~s~v~ 348 (351)
T KOG1227|consen 297 ENVKDSDIKIVEADGVNKTIKDIANKGVNS------KTNRIKSFAPRISHVCVDSDVI 348 (351)
T ss_pred ccccccccccccccchhhHHHHHHhccCce------eehhhccCCCccceeeecceee
Confidence 9999887 4556666667777776654322 2577999999999999998764
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=7.5e-39 Score=326.01 Aligned_cols=282 Identities=24% Similarity=0.455 Sum_probs=251.1
Q ss_pred EEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCC--cccccEEEEeCCCCcEEEeccC-----------CC
Q 036185 274 RIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRH--ARRNDLFLLDPLQGTIKAIHTE-----------GS 340 (1057)
Q Consensus 274 ~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~--~~~~d~~~yd~~t~~W~~l~~~-----------~~ 340 (1057)
.+.+.+.| .|..|+++.+++. ||-|||+-..... ..--|+.++|..+..|..++.. -.
T Consensus 5 TVHLeGGP----rRVNHAavaVG~r-----iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~V 75 (392)
T KOG4693|consen 5 TVHLEGGP----RRVNHAAVAVGSR-----IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAV 75 (392)
T ss_pred EEEecCCc----ccccceeeeecce-----EEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCcc
Confidence 34555554 6889999999998 9999997542111 2234889999999999998752 24
Q ss_pred CCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC--Ccc
Q 036185 341 PSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN--DTI 418 (1057)
Q Consensus 341 P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~--~~~ 418 (1057)
|..|++|+.+.+++++|+.||+++....+|.++.||++++.|.+....|..|.+|.+|++|++++.+|||||+.. ..+
T Consensus 76 PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 76 PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred chhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhh
Confidence 667999999999999999999998889999999999999999999999999999999999999999999999865 577
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCC---------CcccCcEEEEECCCCeEEEeeccC
Q 036185 419 FSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNG---------EKALGDLYTFDVHACLWKKEDIAA 489 (1057)
Q Consensus 419 ~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~---------~~~~~~l~~yd~~t~~W~~v~~~~ 489 (1057)
.++++.+|+.|.+|+.+...+.+|.-|..|+++++++.+|||||..+ ..+.+.+..+|+.|+.|......+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 89999999999999999999999999999999999999999999853 245678899999999999988888
Q ss_pred CCCCCceeeEEEEECCEEEEEeccCCC--CCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEeCCC
Q 036185 490 RSPHARFSHTMFLYKNYLGLFGGCPVR--QNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGA 564 (1057)
Q Consensus 490 ~~P~~R~~hs~~~~~~~l~i~GG~~~~--~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~ 564 (1057)
..|.+|.+|++..+++++|+|||+++. ...+++|.|||.+..|..+..-...|.+|.++++++.++++|+|||-.
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 889999999999999999999999864 458999999999999999998888899999999999999999999963
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.6e-36 Score=358.52 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=245.1
Q ss_pred eeeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccC-CCCC-Ccccc
Q 036185 270 LSVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTE-GSPS-PRLGH 347 (1057)
Q Consensus 270 l~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~-~~P~-~R~~h 347 (1057)
-.|..+...+. .|.+|.+|+++.+++. ||||||..... ....+++|+||+.+++|..++.. ..|. +|.+|
T Consensus 151 ~~W~~~~~~~~--~P~pR~~h~~~~~~~~-----iyv~GG~~~~~-~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~ 222 (470)
T PLN02193 151 GKWIKVEQKGE--GPGLRCSHGIAQVGNK-----IYSFGGEFTPN-QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGV 222 (470)
T ss_pred ceEEEcccCCC--CCCCccccEEEEECCE-----EEEECCcCCCC-CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccce
Confidence 46776654433 3567999999999887 99999975421 23457899999999999987644 3454 36789
Q ss_pred EEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEEC
Q 036185 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDT 427 (1057)
Q Consensus 348 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~ 427 (1057)
++++++++||||||... ...++++|+||+.+++|++++..+..|.+|+.|++++++++||||||.+....+++++.||+
T Consensus 223 ~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred EEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEEC
Confidence 99999999999999875 35689999999999999999855556899999999999999999999988778899999999
Q ss_pred CCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEE
Q 036185 428 DTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYL 507 (1057)
Q Consensus 428 ~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l 507 (1057)
.+++|+.++..+..|.+|.+|+++++++++|++||.++. .++++++||+.+++|+.+.+.+..|.+|..|+++.++++|
T Consensus 302 ~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~i 380 (470)
T PLN02193 302 VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHI 380 (470)
T ss_pred CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEE
Confidence 999999998766678899999999999999999998764 3789999999999999997777789999999999999999
Q ss_pred EEEeccCC---------CCCCCeEEEEECCCCeEEEeeccC---CCCCcccceEE--EEe-C-CEEEEEeCCCccccCCc
Q 036185 508 GLFGGCPV---------RQNYQELSLLDLQLHIWKHLKLNY---VCKELFVRSTA--NVV-D-DDLIMIGGGAACYAFGT 571 (1057)
Q Consensus 508 ~i~GG~~~---------~~~~~~i~~yd~~~~~W~~v~~~~---~~~~~~~~~~a--~~~-~-~~iyi~GGg~~~~~~g~ 571 (1057)
||+||... ....+++|+||+.+++|+.+.... ..|.+|..+++ ..+ + +.++++||.... ..
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~---~~ 457 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT---ND 457 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc---cc
Confidence 99999753 124578999999999999997544 23555655543 223 2 459999997431 35
Q ss_pred eecccEEeecc
Q 036185 572 KFSEPVKINLS 582 (1057)
Q Consensus 572 ~~~~~~~~dl~ 582 (1057)
.++|.|.+++.
T Consensus 458 ~~~D~~~~~~~ 468 (470)
T PLN02193 458 RFDDLFFYGID 468 (470)
T ss_pred cccceEEEecC
Confidence 57888888764
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5e-36 Score=343.39 Aligned_cols=302 Identities=20% Similarity=0.287 Sum_probs=235.9
Q ss_pred ceeeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccC-CCCCC-ccc
Q 036185 269 GLSVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTE-GSPSP-RLG 346 (1057)
Q Consensus 269 ~l~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~-~~P~~-R~~ 346 (1057)
.-.|.++...+.. .|.+|.+|+++++++. ||||||..... ....+++++||+.+++|..++.. ..|.+ +.+
T Consensus 6 ~~~W~~~~~~~~~-~P~pR~~h~~~~~~~~-----iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~ 78 (341)
T PLN02153 6 QGGWIKVEQKGGK-GPGPRCSHGIAVVGDK-----LYSFGGELKPN-EHIDKDLYVFDFNTHTWSIAPANGDVPRISCLG 78 (341)
T ss_pred CCeEEEecCCCCC-CCCCCCcceEEEECCE-----EEEECCccCCC-CceeCcEEEEECCCCEEEEcCccCCCCCCccCc
Confidence 3458877765443 3467999999999877 99999986432 23468999999999999988743 23332 347
Q ss_pred cEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeecc--CCCCCcccceEEEEECCEEEEEcccCCC------cc
Q 036185 347 HTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECS--GSVFQPRHRHAAAVIGSKIYVFGGLNND------TI 418 (1057)
Q Consensus 347 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~R~~hsa~~~~~~iyv~GG~~~~------~~ 418 (1057)
|++++++++||+|||... ...++++++||+.+++|+.++.. ...|.+|..|++++++++|||+||.+.. ..
T Consensus 79 ~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 79 VRMVAVGTKLYIFGGRDE-KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred eEEEEECCEEEEECCCCC-CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcc
Confidence 899999999999999865 35678999999999999998732 1238899999999999999999998642 24
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC--------cccCcEEEEECCCCeEEEeeccCC
Q 036185 419 FSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE--------KALGDLYTFDVHACLWKKEDIAAR 490 (1057)
Q Consensus 419 ~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~--------~~~~~l~~yd~~t~~W~~v~~~~~ 490 (1057)
++++++||+.+++|+.++.++..|.+|.+|++++++++||++||.+.. ..++++++||+.+++|+.+...+.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 678999999999999998877667899999999999999999997421 236889999999999999977778
Q ss_pred CCCCceeeEEEEECCEEEEEeccCC---------CCCCCeEEEEECCCCeEEEeeccCCCCCcccc--eE-EEEeC-CEE
Q 036185 491 SPHARFSHTMFLYKNYLGLFGGCPV---------RQNYQELSLLDLQLHIWKHLKLNYVCKELFVR--ST-ANVVD-DDL 557 (1057)
Q Consensus 491 ~P~~R~~hs~~~~~~~l~i~GG~~~---------~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~--~~-a~~~~-~~i 557 (1057)
+|.+|..|+++.++++||||||... ....+++|+||+++++|+.+.....++.++.+ ++ +++.+ ++|
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~ 317 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGL 317 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceE
Confidence 8999999999999999999999632 22367999999999999998754444444433 23 33333 589
Q ss_pred EEEeCCCccccCCceecccEEeec
Q 036185 558 IMIGGGAACYAFGTKFSEPVKINL 581 (1057)
Q Consensus 558 yi~GGg~~~~~~g~~~~~~~~~dl 581 (1057)
||+||.... ...+++.+.+++
T Consensus 318 ~~~gG~~~~---~~~~~~~~~~~~ 338 (341)
T PLN02153 318 LMHGGKLPT---NERTDDLYFYAV 338 (341)
T ss_pred EEEcCcCCC---CccccceEEEec
Confidence 999997542 123455555544
No 10
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=100.00 E-value=1.2e-36 Score=315.41 Aligned_cols=198 Identities=34% Similarity=0.481 Sum_probs=152.8
Q ss_pred CceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHc-CccEEEcccccCCCCccccceEEEeeCC-ceEEEEeCCEEEE
Q 036185 793 SRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKIL-NTSHLARQGRVAPTGTRDSALEILVGDN-GWVKHCENGILYS 870 (1057)
Q Consensus 793 ~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~i~~~~~i~~~~~r~~~~~~l~G~~-~~~~~~e~gi~~~ 870 (1057)
++||++|||++++++....+..+.+++ ++.+.. +++.|+.+.....+++|.+++++|+|++ ++++|+|||++|.
T Consensus 1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~----~i~~~~~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~ 76 (200)
T PF02475_consen 1 TSFEIIGDIAIVNLPEELEPYKELIAE----AILEKNPNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFK 76 (200)
T ss_dssp -EEEEETTEEEEEB-CCCCHHHHHHHH----HHHHHC-T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEE
T ss_pred CceEEEccEEEEeCCcccchHHHHHHH----HHHHhccCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEE
Confidence 489999999999998665554544444 544555 5777777665445899999999999998 6788999999999
Q ss_pred EecceeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEE
Q 036185 871 FDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIV 950 (1057)
Q Consensus 871 ~d~~~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~ 950 (1057)
+|++++||++++.+||.|+++.+++|++|+|||||+|+|+|++|+..+++.|+|+|+||+|++++++|+++|++++++.+
T Consensus 77 ~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~ 156 (200)
T PF02475_consen 77 VDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEV 156 (200)
T ss_dssp EETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEE
T ss_pred EccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999666788999999999999999999999999999999
Q ss_pred EeCCccccCCCCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEE
Q 036185 951 LEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 951 ~~~D~~~~~~~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
+++|++++++...+|+|+||+|+.+..++..++.+++ +||++|+
T Consensus 157 ~~~D~~~~~~~~~~drvim~lp~~~~~fl~~~~~~~~-~~g~ihy 200 (200)
T PF02475_consen 157 INGDAREFLPEGKFDRVIMNLPESSLEFLDAALSLLK-EGGIIHY 200 (200)
T ss_dssp EES-GGG---TT-EEEEEE--TSSGGGGHHHHHHHEE-EEEEEEE
T ss_pred EcCCHHHhcCccccCEEEECChHHHHHHHHHHHHHhc-CCcEEEC
Confidence 9999999998778999999996677788888888887 7999996
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-34 Score=348.91 Aligned_cols=271 Identities=17% Similarity=0.315 Sum_probs=243.3
Q ss_pred CcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCC
Q 036185 301 DSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKS 380 (1057)
Q Consensus 301 ~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~ 380 (1057)
.+.||++||... .....+.+.+||+.+++|..++ ++|.+|..+++++++|+||++||+++....++++|+||+.++
T Consensus 284 ~~~l~~vGG~~~--~~~~~~~ve~yd~~~~~w~~~a--~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNR--QGQSLRSVECYDPKTNEWSSLA--PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCC--CCcccceeEEecCCcCcEeecC--CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 356999999876 2357899999999999999998 899999999999999999999999854678899999999999
Q ss_pred cEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEE
Q 036185 381 KWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMF 460 (1057)
Q Consensus 381 ~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~ 460 (1057)
+|+.++ +|+.+|..++++++++.||++||.++...++++++|||.+++|+.++++ +.+|++|++++++++||++
T Consensus 360 ~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m---~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 360 QWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM---LTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred ceeccC---CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC---CcceeeeEEEEECCEEEEE
Confidence 999998 8999999999999999999999999999999999999999999999874 6699999999999999999
Q ss_pred ecCCCCc-ccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccC
Q 036185 461 GGYNGEK-ALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNY 539 (1057)
Q Consensus 461 GG~~~~~-~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~ 539 (1057)
||.++.. .++.+.+|||.+++|+.+ ++|+.+|.+++++.++++||++||+++......++.|||++++|+.+..+.
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 9998877 999999999999999997 789999999999999999999999998667888999999999999997554
Q ss_pred CCCCcccceEEEEeCCEEEEEeCCCccccCCceecccEEeeccccccccCCC
Q 036185 540 VCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMSLDD 591 (1057)
Q Consensus 540 ~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~~~~~~~~~dl~~~~~~~~~~ 591 (1057)
. ++...+++++++++|++||.. .....+.+..+|..+..|.....
T Consensus 511 ~---~rs~~g~~~~~~~ly~vGG~~----~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 511 S---PRSAVGVVVLGGKLYAVGGFD----GNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred c---ccccccEEEECCEEEEEeccc----CccccceeEEcCCCCCceeeCCC
Confidence 3 467788999999999999943 34455566667877777777655
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-33 Score=335.65 Aligned_cols=285 Identities=21% Similarity=0.342 Sum_probs=240.5
Q ss_pred cEEEEEcccCCCCCCcccccE--EEEeCCC----CcEEEeccC-CCCCCccccEEEEECCEEEEEcccCCCC-CCCCcEE
Q 036185 302 SQILVFGGFGGMGRHARRNDL--FLLDPLQ----GTIKAIHTE-GSPSPRLGHTSSLIGDHMFIIGGRADPL-NILSDVW 373 (1057)
Q Consensus 302 ~~lyvfGG~~~~g~~~~~~d~--~~yd~~t----~~W~~l~~~-~~P~~R~~hs~v~~~~~Iyv~GG~~~~~-~~~~~v~ 373 (1057)
++|+.|+|.... .++.+ +.+++.+ ++|..++.. .+|.||.+|++++++++||||||..... ...+++|
T Consensus 121 ~~ivgf~G~~~~----~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 121 GKIVGFHGRSTD----VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred CeEEEEeccCCC----cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 369999998762 34444 4447655 799998754 4799999999999999999999985432 3557899
Q ss_pred EEECCCCcEEEeeccCCCCC-cccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 036185 374 VFNMAKSKWTLLECSGSVFQ-PRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA 452 (1057)
Q Consensus 374 ~yd~~t~~W~~~~~~g~~p~-~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~ 452 (1057)
+||+.+++|+.++..+.+|. +|..|++++++++||||||.+....++++|+||+.+++|+.+++++..|.+|..|+++.
T Consensus 197 ~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~ 276 (470)
T PLN02193 197 VFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA 276 (470)
T ss_pred EEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE
Confidence 99999999999876666665 46789999999999999999887788999999999999999988766689999999999
Q ss_pred ECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeE
Q 036185 453 YGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIW 532 (1057)
Q Consensus 453 ~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W 532 (1057)
++++||+|||.++...+++++.||+.+++|+.+...+.+|.+|..|+++.+++++|++||.++. ..+++++||+.+++|
T Consensus 277 ~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W 355 (470)
T PLN02193 277 DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKW 355 (470)
T ss_pred ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEE
Confidence 9999999999988778899999999999999987666688899999999999999999998654 468999999999999
Q ss_pred EEeeccCCCCCcccceEEEEeCCEEEEEeCCCcc-----ccCCceecccEEeeccccccccCCC
Q 036185 533 KHLKLNYVCKELFVRSTANVVDDDLIMIGGGAAC-----YAFGTKFSEPVKINLSSVPLMSLDD 591 (1057)
Q Consensus 533 ~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~~-----~~~g~~~~~~~~~dl~~~~~~~~~~ 591 (1057)
++++.....|.+|..++++.++++|||+||.... ...+...++.+.+|+.+..|..+..
T Consensus 356 ~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 356 TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 9998665556778889999999999999997431 1123466789999999999987754
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=294.43 Aligned_cols=244 Identities=27% Similarity=0.488 Sum_probs=219.9
Q ss_pred CcCCCceeeEEEEe--------cCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEe
Q 036185 264 GVPSCGLSVSRIVI--------AGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAI 335 (1057)
Q Consensus 264 ~~~~~~l~w~~l~~--------~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l 335 (1057)
.+|...++|..+.. ...|.-|..|+||+.+.+.+. +||+||.+. .....|-+++|||+++.|++.
T Consensus 48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~-----~yvWGGRND--~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK-----AYVWGGRND--DEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred EeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce-----EEEEcCccC--cccccceeeeecccccccccc
Confidence 56788999988776 334556778999999999998 999999877 344678999999999999998
Q ss_pred ccC-CCCCCccccEEEEECCEEEEEcccCCC-CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEccc
Q 036185 336 HTE-GSPSPRLGHTSSLIGDHMFIIGGRADP-LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGL 413 (1057)
Q Consensus 336 ~~~-~~P~~R~~hs~v~~~~~Iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~ 413 (1057)
... -.|.+|-+|+++++++.+|||||+... ..+.++++.+|..|.+|+.+.+.|.+|.-|..|+++++++.+|||||.
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccc
Confidence 776 589999999999999999999998643 467899999999999999999999999999999999999999999998
Q ss_pred CC---------CcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC--cccCcEEEEECCCCeE
Q 036185 414 NN---------DTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE--KALGDLYTFDVHACLW 482 (1057)
Q Consensus 414 ~~---------~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~--~~~~~l~~yd~~t~~W 482 (1057)
.. +.+.+.+..+|+.|..|...+..+..|..|.+|++.++++++|+|||+++. ..++++|.|||.+..|
T Consensus 201 ~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 201 SDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMW 280 (392)
T ss_pred cccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchh
Confidence 64 345678899999999999998888899999999999999999999999874 6789999999999999
Q ss_pred EEeeccCCCCCCceeeEEEEECCEEEEEeccC
Q 036185 483 KKEDIAARSPHARFSHTMFLYKNYLGLFGGCP 514 (1057)
Q Consensus 483 ~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~ 514 (1057)
+.+...|..|.+|..+++++.++++|+|||..
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred eeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 99999999999999999999999999999954
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.2e-33 Score=332.04 Aligned_cols=310 Identities=17% Similarity=0.288 Sum_probs=251.5
Q ss_pred eecCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCC---CC-Ccccc--cccccccCCCCCCC-cCC------Cc
Q 036185 203 VLVSQDYVRFLVGIANQKLEANSRRIDGFLQAFNFMVGSSV---SS-KDEHQ--NCGDLTKNVDGPPG-VPS------CG 269 (1057)
Q Consensus 203 ~~v~~~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~~~~~~~---~s-~~~~~--~~~d~~~~~g~~~~-~~~------~~ 269 (1057)
.|+++.||...+.. ...+..+.....-+.++.+-.+.+.. .+ +.... ...+....+|++.. ... +.
T Consensus 229 ~ll~~~~l~~~v~~-~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 229 PLLPPQFLVEIVES-EPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred cCCCHHHHHHHHhh-hhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 45777777776665 33455555555556665532221110 11 11111 12333345577653 111 11
Q ss_pred e---eeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccc
Q 036185 270 L---SVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLG 346 (1057)
Q Consensus 270 l---~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~ 346 (1057)
. .|..+ ...+.+|..++++++++. ||++||++. ....++.+++||+.+++|..++ +|+.+|.+
T Consensus 308 ~~~~~w~~~-----a~m~~~r~~~~~~~~~~~-----lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a--~M~~~R~~ 373 (571)
T KOG4441|consen 308 PKTNEWSSL-----APMPSPRCRVGVAVLNGK-----LYVVGGYDS--GSDRLSSVERYDPRTNQWTPVA--PMNTKRSD 373 (571)
T ss_pred CCcCcEeec-----CCCCcccccccEEEECCE-----EEEEccccC--CCcccceEEEecCCCCceeccC--CccCcccc
Confidence 1 23222 223356888999999987 999999984 2467899999999999999987 99999999
Q ss_pred cEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCc-ccceEEEE
Q 036185 347 HTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDT-IFSSLHVL 425 (1057)
Q Consensus 347 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~-~~~~v~~y 425 (1057)
+++++++|.||++||+++ ...++++++||+.+++|+.++ +|+.+|++|++++++++||++||.++.. .++++++|
T Consensus 374 ~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred ceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence 999999999999999986 578899999999999999997 8999999999999999999999999877 99999999
Q ss_pred ECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECC
Q 036185 426 DTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKN 505 (1057)
Q Consensus 426 D~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~ 505 (1057)
||.+++|+.+++ ++.+|.++++++++++||++||+++...+..+.+||+.+++|+.+ .+++.+|..++++.+++
T Consensus 450 DP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 450 DPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSPRSAVGVVVLGG 523 (571)
T ss_pred cCCCCceeecCC---cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCccccccccEEEECC
Confidence 999999999988 488999999999999999999999977788899999999999998 77899999999999999
Q ss_pred EEEEEeccCCCCCCCeEEEEECCCCeEEEeec
Q 036185 506 YLGLFGGCPVRQNYQELSLLDLQLHIWKHLKL 537 (1057)
Q Consensus 506 ~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~ 537 (1057)
++|++||+++...++.+..|||.+++|+....
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 99999999999999999999999999999875
No 15
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=332.01 Aligned_cols=262 Identities=15% Similarity=0.187 Sum_probs=221.5
Q ss_pred EEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEE
Q 036185 304 ILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWT 383 (1057)
Q Consensus 304 lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 383 (1057)
+++.||... .....+++||+.+++|..++ ++|.+|.+|++++++++||++||.+.....++++++||+.+++|.
T Consensus 260 l~~~~g~~~----~~~~~v~~yd~~~~~W~~l~--~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 260 LVCHDTKYN----VCNPCILVYNINTMEYSVIS--TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV 333 (557)
T ss_pred EEEecCccc----cCCCCEEEEeCCCCeEEECC--CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe
Confidence 566555211 12357899999999999987 889999999999999999999998643456789999999999999
Q ss_pred EeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecC
Q 036185 384 LLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGY 463 (1057)
Q Consensus 384 ~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~ 463 (1057)
.++ +||.+|..+++++++++||++||.++...++++++|||.+++|+.+++ +|.+|.++++++++++||++||.
T Consensus 334 ~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 334 ELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred eCC---CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCC
Confidence 987 899999999999999999999999877778899999999999999876 68999999999999999999998
Q ss_pred CCC------------------cccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCC-CCeEEE
Q 036185 464 NGE------------------KALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQN-YQELSL 524 (1057)
Q Consensus 464 ~~~------------------~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~-~~~i~~ 524 (1057)
++. ..++.+++|||.+++|+.+ +++|.+|..++++.++++||++||+++... .+.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 408 TEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred CcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEE
Confidence 642 1367899999999999987 688999999999999999999999865433 346899
Q ss_pred EECCC-CeEEEeeccCCCCCcccceEEEEeCCEEEEEeCCCccccCCceecccEEeeccccccccCC
Q 036185 525 LDLQL-HIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMSLD 590 (1057)
Q Consensus 525 yd~~~-~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~~~~~~~~~dl~~~~~~~~~ 590 (1057)
|||++ ++|+.++.++ .+|..+++++++|+||++||.... ..+..+|..+.+|...+
T Consensus 485 Ydp~~~~~W~~~~~m~---~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 485 YNTNTYNGWELITTTE---SRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred ecCCCCCCeeEccccC---cccccceeEEECCEEEEEeeecce-------eehhhcCcccccccchh
Confidence 99999 8999987654 357788999999999999996431 23456777777777653
No 16
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=326.17 Aligned_cols=270 Identities=31% Similarity=0.564 Sum_probs=242.3
Q ss_pred CCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccC-CCCCCccccEEEEECCEEEE
Q 036185 280 EPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTE-GSPSPRLGHTSSLIGDHMFI 358 (1057)
Q Consensus 280 ~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~-~~P~~R~~hs~v~~~~~Iyv 358 (1057)
....|.+|++|+++.+++. +|||||.......... ++|+||..+..|...... ..|.+|++|+++.++++||+
T Consensus 54 ~~~~p~~R~~hs~~~~~~~-----~~vfGG~~~~~~~~~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNK-----LYVFGGYGSGDRLTDL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred CCCCcchhhccceeEECCE-----EEEECCCCCCCccccc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 3446678999999999777 9999998875433333 799999999999987765 67899999999999999999
Q ss_pred EcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCc-ccceEEEEECCCCcEEEeec
Q 036185 359 IGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDT-IFSSLHVLDTDTLQWKELLI 437 (1057)
Q Consensus 359 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~-~~~~v~~yD~~t~~W~~~~~ 437 (1057)
|||.+.....+++++.||+.|++|+.+.+.+.+|++|.+|+++++++++|||||.+... .+|++|+||+.+.+|.++..
T Consensus 128 fGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 128 FGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred EccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 99998656678999999999999999999999999999999999999999999998866 89999999999999999999
Q ss_pred CCCCCCCcceeEEEEECCEEEEEecCC-CCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCC
Q 036185 438 NGEGPCARHSHSMLAYGSRLYMFGGYN-GEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVR 516 (1057)
Q Consensus 438 ~g~~P~~r~~~s~~~~~~~lyv~GG~~-~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~ 516 (1057)
.+..|.||++|+++.+++++|++||.+ +..+++|+|.||+.+..|..+.+.+..|.+|++|+++..+++++++||....
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP 287 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence 999999999999999999999999988 7889999999999999999988889999999999999999999999997764
Q ss_pred --CCCCeEEEEECCCCeEEEeeccC-CCCCcccceEEEEeCC
Q 036185 517 --QNYQELSLLDLQLHIWKHLKLNY-VCKELFVRSTANVVDD 555 (1057)
Q Consensus 517 --~~~~~i~~yd~~~~~W~~v~~~~-~~~~~~~~~~a~~~~~ 555 (1057)
..+.++|.||.++..|.++.... ..+.++..++++....
T Consensus 288 ~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
T KOG0379|consen 288 KQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDE 329 (482)
T ss_pred ccccccccccccccccceeeeeccccccccccccccceeecc
Confidence 25889999999999999998777 5667777776666543
No 17
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.4e-32 Score=310.07 Aligned_cols=265 Identities=22% Similarity=0.373 Sum_probs=217.6
Q ss_pred CCCcEEEeccC--CCCCCccccEEEEECCEEEEEcccCCC-CCCCCcEEEEECCCCcEEEeeccCCCCCc-ccceEEEEE
Q 036185 328 LQGTIKAIHTE--GSPSPRLGHTSSLIGDHMFIIGGRADP-LNILSDVWVFNMAKSKWTLLECSGSVFQP-RHRHAAAVI 403 (1057)
Q Consensus 328 ~t~~W~~l~~~--~~P~~R~~hs~v~~~~~Iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-R~~hsa~~~ 403 (1057)
...+|..+... .+|.||.+|++++++++|||+||.... ....+++|+||+.+++|+.+++.+..|.. +.+|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 56779999764 379999999999999999999998543 34568999999999999998755444443 457899999
Q ss_pred CCEEEEEcccCCCcccceEEEEECCCCcEEEeecCC--CCCCCcceeEEEEECCEEEEEecCCCC------cccCcEEEE
Q 036185 404 GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLING--EGPCARHSHSMLAYGSRLYMFGGYNGE------KALGDLYTF 475 (1057)
Q Consensus 404 ~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g--~~P~~r~~~s~~~~~~~lyv~GG~~~~------~~~~~l~~y 475 (1057)
+++||+|||.+....++++++||+.+++|+.++.+. ..|.+|..|+++..+++||++||.+.. ..++++++|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 999999999988777899999999999999987642 237899999999999999999998632 245789999
Q ss_pred ECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCC--------CCCCeEEEEECCCCeEEEeeccCCCCCcccc
Q 036185 476 DVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVR--------QNYQELSLLDLQLHIWKHLKLNYVCKELFVR 547 (1057)
Q Consensus 476 d~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~--------~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~ 547 (1057)
|+.+++|+.+...+..|.+|.+|+++.++++||++||.+.. ...+++++||+.+++|+.+......|.+|..
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~ 244 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV 244 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence 99999999987666667899999999999999999996421 2357899999999999999765545667888
Q ss_pred eEEEEeCCEEEEEeCCCcc-----ccCCceecccEEeeccccccccCCCC
Q 036185 548 STANVVDDDLIMIGGGAAC-----YAFGTKFSEPVKINLSSVPLMSLDDC 592 (1057)
Q Consensus 548 ~~a~~~~~~iyi~GGg~~~-----~~~g~~~~~~~~~dl~~~~~~~~~~~ 592 (1057)
+++++++++|||+||.... ...+...++.+.+|+.+..|......
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 9999999999999996311 11234566899999999999887654
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.4e-32 Score=306.72 Aligned_cols=266 Identities=19% Similarity=0.241 Sum_probs=212.7
Q ss_pred ccccceEEEEECCccCCcEEEEEcccCCCC-------CCcccccEEEEeCCCC--cEEEeccCCCCCCccccEEEEECCE
Q 036185 285 LFLWGHSACILGNSINDSQILVFGGFGGMG-------RHARRNDLFLLDPLQG--TIKAIHTEGSPSPRLGHTSSLIGDH 355 (1057)
Q Consensus 285 ~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g-------~~~~~~d~~~yd~~t~--~W~~l~~~~~P~~R~~hs~v~~~~~ 355 (1057)
+.+.||.++++++. |||+||.+.+. .....+++++|+.... +|..++ ++|.+|..+++++++++
T Consensus 2 ~~~~g~~~~~~~~~-----l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~--~lp~~r~~~~~~~~~~~ 74 (323)
T TIGR03548 2 LGVAGCYAGIIGDY-----ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG--QLPYEAAYGASVSVENG 74 (323)
T ss_pred CceeeEeeeEECCE-----EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc--cCCccccceEEEEECCE
Confidence 45788999999988 99999987642 2345678999963332 687766 88999999999999999
Q ss_pred EEEEcccCCCCCCCCcEEEEECCCCcEE-EeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEE
Q 036185 356 MFIIGGRADPLNILSDVWVFNMAKSKWT-LLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKE 434 (1057)
Q Consensus 356 Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (1057)
||++||.+. ...++++|+||+.+++|+ ......++|.+|..|++++++++||++||......++++++||+.+++|+.
T Consensus 75 lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 75 IYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred EEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence 999999875 456789999999999983 222334899999999999999999999998766678999999999999999
Q ss_pred eecCCCCC-CCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccC--CCCCCceeeEEE-EECCEEEEE
Q 036185 435 LLINGEGP-CARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAA--RSPHARFSHTMF-LYKNYLGLF 510 (1057)
Q Consensus 435 ~~~~g~~P-~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~--~~P~~R~~hs~~-~~~~~l~i~ 510 (1057)
++++ | .+|..|+++.++++||++||.++.. ..++++||+.+++|+.+.... ..|..+..++++ ..+++||++
T Consensus 154 ~~~~---p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 154 LPDF---PGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred CCCC---CCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 8763 4 4789999999999999999987543 467899999999999985432 234444445544 447999999
Q ss_pred eccCCCC--------------------------------CCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEE
Q 036185 511 GGCPVRQ--------------------------------NYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLI 558 (1057)
Q Consensus 511 GG~~~~~--------------------------------~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iy 558 (1057)
||.+... ..+++++||+.+++|+.++.++ ..+|..++++.++++||
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r~~~~~~~~~~~iy 307 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP--FFARCGAALLLTGNNIF 307 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc--ccccCchheEEECCEEE
Confidence 9976321 1367999999999999987432 23577788999999999
Q ss_pred EEeCCC
Q 036185 559 MIGGGA 564 (1057)
Q Consensus 559 i~GGg~ 564 (1057)
++||..
T Consensus 308 v~GG~~ 313 (323)
T TIGR03548 308 SINGEL 313 (323)
T ss_pred EEeccc
Confidence 999963
No 19
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-32 Score=326.14 Aligned_cols=233 Identities=15% Similarity=0.229 Sum_probs=204.5
Q ss_pred CcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEccc
Q 036185 283 EKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGR 362 (1057)
Q Consensus 283 ~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~ 362 (1057)
.|.+|.+|+++++++. |||+||.+.. ....+++++|||.+++|..++ +||.+|.++++++++++||++||.
T Consensus 290 mp~~r~~~~~a~l~~~-----IYviGG~~~~--~~~~~~v~~Yd~~~n~W~~~~--~m~~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 290 IPNHIINYASAIVDNE-----IIIAGGYNFN--NPSLNKVYKINIENKIHVELP--PMIKNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred CCccccceEEEEECCE-----EEEEcCCCCC--CCccceEEEEECCCCeEeeCC--CCcchhhceeEEEECCEEEEECCc
Confidence 3456888999999887 9999997531 235789999999999999887 899999999999999999999998
Q ss_pred CCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCC------------------cccceEEE
Q 036185 363 ADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNND------------------TIFSSLHV 424 (1057)
Q Consensus 363 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~------------------~~~~~v~~ 424 (1057)
++. ..++++++||+.+++|+.++ ++|.+|..|++++++++||++||.++. ..++++++
T Consensus 361 ~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 361 NGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred CCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 653 56789999999999999987 899999999999999999999998642 13678999
Q ss_pred EECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcc-cCcEEEEECCC-CeEEEeeccCCCCCCceeeEEEE
Q 036185 425 LDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKA-LGDLYTFDVHA-CLWKKEDIAARSPHARFSHTMFL 502 (1057)
Q Consensus 425 yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~-~~~l~~yd~~t-~~W~~v~~~~~~P~~R~~hs~~~ 502 (1057)
|||.+++|+.+++ +|.+|..+++++++++||++||+++... .+.+++|||.+ ++|+.+ +++|.+|..++++.
T Consensus 437 YDP~td~W~~v~~---m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~---~~m~~~r~~~~~~~ 510 (557)
T PHA02713 437 YDTVNNIWETLPN---FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI---TTTESRLSALHTIL 510 (557)
T ss_pred ECCCCCeEeecCC---CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc---cccCcccccceeEE
Confidence 9999999999976 5889999999999999999999875433 34689999999 899997 78999999999999
Q ss_pred ECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeec
Q 036185 503 YKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKL 537 (1057)
Q Consensus 503 ~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~ 537 (1057)
++++||++||+++. ..+.+||+.+++|+.+.+
T Consensus 511 ~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 HDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 99999999998763 378999999999999864
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.98 E-value=1.3e-30 Score=299.45 Aligned_cols=258 Identities=17% Similarity=0.269 Sum_probs=203.7
Q ss_pred CcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeC--CCCcEEEeccCCCC-CCccccEEEEECCEEEEE
Q 036185 283 EKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDP--LQGTIKAIHTEGSP-SPRLGHTSSLIGDHMFII 359 (1057)
Q Consensus 283 ~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~--~t~~W~~l~~~~~P-~~R~~hs~v~~~~~Iyv~ 359 (1057)
.|.+|..++++++++. |||+||... +++++||+ .+++|..++ ++| .+|.+|++++++++|||+
T Consensus 4 lp~~~~~~~~~~~~~~-----vyv~GG~~~-------~~~~~~d~~~~~~~W~~l~--~~p~~~R~~~~~~~~~~~iYv~ 69 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDK-----VYVGLGSAG-------TSWYKLDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGKLYVF 69 (346)
T ss_pred CCccccCceEEEECCE-----EEEEccccC-------CeeEEEECCCCCCCceECC--CCCCCCcccceEEEECCEEEEE
Confidence 3457787888888877 999999632 57899996 568899987 788 589999999999999999
Q ss_pred cccCCCC-----CCCCcEEEEECCCCcEEEeeccCCCCCcccceEEE-EECCEEEEEcccCCCc----------------
Q 036185 360 GGRADPL-----NILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAA-VIGSKIYVFGGLNNDT---------------- 417 (1057)
Q Consensus 360 GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~-~~~~~iyv~GG~~~~~---------------- 417 (1057)
||..... ..++++|+||+.+++|+.++. ++|.+|.+|+++ +++++||++||.+...
T Consensus 70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 147 (346)
T TIGR03547 70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSE 147 (346)
T ss_pred eCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccch
Confidence 9985321 257899999999999999962 467778888877 7899999999986421
Q ss_pred ------------------ccceEEEEECCCCcEEEeecCCCCCC-CcceeEEEEECCEEEEEecCCCCc-ccCcEEEEEC
Q 036185 418 ------------------IFSSLHVLDTDTLQWKELLINGEGPC-ARHSHSMLAYGSRLYMFGGYNGEK-ALGDLYTFDV 477 (1057)
Q Consensus 418 ------------------~~~~v~~yD~~t~~W~~~~~~g~~P~-~r~~~s~~~~~~~lyv~GG~~~~~-~~~~l~~yd~ 477 (1057)
.++++++||+.+++|+.+++ +|. +|.+++++.++++||++||..... ...+++.||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~ 224 (346)
T TIGR03547 148 PKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLF 224 (346)
T ss_pred hhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEe
Confidence 24789999999999999976 464 688999999999999999986432 2345666654
Q ss_pred --CCCeEEEeeccCCCCCCc-------eeeEEEEECCEEEEEeccCCCC-----------------CCCeEEEEECCCCe
Q 036185 478 --HACLWKKEDIAARSPHAR-------FSHTMFLYKNYLGLFGGCPVRQ-----------------NYQELSLLDLQLHI 531 (1057)
Q Consensus 478 --~t~~W~~v~~~~~~P~~R-------~~hs~~~~~~~l~i~GG~~~~~-----------------~~~~i~~yd~~~~~ 531 (1057)
.+++|+.+ ..+|.+| .+|+++.++++||++||.+... ....+.+||+++++
T Consensus 225 ~~~~~~W~~~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 301 (346)
T TIGR03547 225 TGGKLEWNKL---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGK 301 (346)
T ss_pred cCCCceeeec---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCc
Confidence 67799987 4455443 4677888999999999975211 12368899999999
Q ss_pred EEEeeccCCCCCcccceEEEEeCCEEEEEeCCCc
Q 036185 532 WKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 532 W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~ 565 (1057)
|+.+..++ .++..+++++++++|||+||...
T Consensus 302 W~~~~~lp---~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 302 WSKVGKLP---QGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred ccccCCCC---CCceeeEEEEcCCEEEEEeccCC
Confidence 99987553 34666778889999999999743
No 21
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.7e-31 Score=289.38 Aligned_cols=286 Identities=23% Similarity=0.395 Sum_probs=244.9
Q ss_pred ceeeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccC-CCCCCcccc
Q 036185 269 GLSVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTE-GSPSPRLGH 347 (1057)
Q Consensus 269 ~l~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~-~~P~~R~~h 347 (1057)
-++|.++.-+..|.+ .+|.||-++.+..- |++|||-+. ...+++.+||..+++|..-+.. +.|++...|
T Consensus 16 ~~rWrrV~~~tGPvP-rpRHGHRAVaikEL-----iviFGGGNE----GiiDELHvYNTatnqWf~PavrGDiPpgcAA~ 85 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVP-RPRHGHRAVAIKEL-----IVIFGGGNE----GIIDELHVYNTATNQWFAPAVRGDIPPGCAAF 85 (830)
T ss_pred ccceEEEecccCCCC-Cccccchheeeeee-----EEEecCCcc----cchhhhhhhccccceeecchhcCCCCCchhhc
Confidence 467888887777654 58999999999887 999999554 5689999999999999875554 789999999
Q ss_pred EEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEee----ccCCCCCcccceEEEEECCEEEEEcccCC--------
Q 036185 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLE----CSGSVFQPRHRHAAAVIGSKIYVFGGLNN-------- 415 (1057)
Q Consensus 348 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----~~g~~p~~R~~hsa~~~~~~iyv~GG~~~-------- 415 (1057)
.++..+.+||+|||......+.|++|.+....-.|.++. ..|++|+||-+|+..+++++.|+|||..+
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 999999999999999887889999998887777888875 36789999999999999999999999754
Q ss_pred -CcccceEEEEECCCC----cEEEeecCCCCCCCcceeEEEEE------CCEEEEEecCCCCcccCcEEEEECCCCeEEE
Q 036185 416 -DTIFSSLHVLDTDTL----QWKELLINGEGPCARHSHSMLAY------GSRLYMFGGYNGEKALGDLYTFDVHACLWKK 484 (1057)
Q Consensus 416 -~~~~~~v~~yD~~t~----~W~~~~~~g~~P~~r~~~s~~~~------~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~ 484 (1057)
..++||+|.+++..+ .|......|.+|.+|.+|+++.+ ..++|+|||+++. .+.|+|.+|++|..|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 257899999998754 59999999999999999999987 3479999999874 58999999999999999
Q ss_pred eeccCCCCCCceeeEEEEECCEEEEEeccCC--------------CCCCCeEEEEECCCCeEEEeeccCC----CCCccc
Q 036185 485 EDIAARSPHARFSHTMFLYKNYLGLFGGCPV--------------RQNYQELSLLDLQLHIWKHLKLNYV----CKELFV 546 (1057)
Q Consensus 485 v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~--------------~~~~~~i~~yd~~~~~W~~v~~~~~----~~~~~~ 546 (1057)
....|..|.||.-|+++.+++++|||||+-. -.+.+.+-++|+.++.|..+-.... .+.+|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999631 1246678899999999998743222 245677
Q ss_pred ceEEEEeCCEEEEEeCCCc
Q 036185 547 RSTANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 547 ~~~a~~~~~~iyi~GGg~~ 565 (1057)
+||++.++.++||..|.+.
T Consensus 325 GHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 325 GHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cceeEEeccEEEEEeccch
Confidence 8999999999999999753
No 22
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=312.25 Aligned_cols=232 Identities=17% Similarity=0.330 Sum_probs=204.5
Q ss_pred ccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCC
Q 036185 287 LWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPL 366 (1057)
Q Consensus 287 R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~ 366 (1057)
+..|+++++++. ||++||.... ....+++++||+.+++|..++ ++|.+|.+|++++++++||++||... .
T Consensus 285 ~~~~~~~~~~~~-----lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~--~~~~~R~~~~~~~~~~~lyv~GG~~~-~ 354 (534)
T PHA03098 285 VYCFGSVVLNNV-----IYFIGGMNKN--NLSVNSVVSYDTKTKSWNKVP--ELIYPRKNPGVTVFNNRIYVIGGIYN-S 354 (534)
T ss_pred cccceEEEECCE-----EEEECCCcCC--CCeeccEEEEeCCCCeeeECC--CCCcccccceEEEECCEEEEEeCCCC-C
Confidence 455788888887 9999998753 345689999999999999886 78999999999999999999999874 4
Q ss_pred CCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC-CcccceEEEEECCCCcEEEeecCCCCCCCc
Q 036185 367 NILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN-DTIFSSLHVLDTDTLQWKELLINGEGPCAR 445 (1057)
Q Consensus 367 ~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~-~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r 445 (1057)
..++++++||+.+++|+.++ ++|.||+.|++++++++||++||... ...++++++||+.+++|+.+++ +|.+|
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r 428 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISH 428 (534)
T ss_pred EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccc
Confidence 56889999999999999987 88999999999999999999999754 4457899999999999999865 68899
Q ss_pred ceeEEEEECCEEEEEecCCCCc---ccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeE
Q 036185 446 HSHSMLAYGSRLYMFGGYNGEK---ALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQEL 522 (1057)
Q Consensus 446 ~~~s~~~~~~~lyv~GG~~~~~---~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i 522 (1057)
.+|+++..+++||++||.+... .++.+++||+.+++|+.+ +.+|.+|..++++.++++||++||.+.....+++
T Consensus 429 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 429 YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNFPRINASLCIFNNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCcccccceEEEECCEEEEEcCCcCCccccee
Confidence 9999999999999999986432 367799999999999997 5678889999999999999999998876667899
Q ss_pred EEEECCCCeEEEeec
Q 036185 523 SLLDLQLHIWKHLKL 537 (1057)
Q Consensus 523 ~~yd~~~~~W~~v~~ 537 (1057)
++||+.+++|+.++.
T Consensus 506 ~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 506 EVYDDKTNTWTLFCK 520 (534)
T ss_pred EEEeCCCCEEEecCC
Confidence 999999999999864
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=5.9e-29 Score=288.35 Aligned_cols=271 Identities=18% Similarity=0.256 Sum_probs=205.7
Q ss_pred CcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCC--CCcEEEeccCCCC-CCccccEEEEECCEEEEE
Q 036185 283 EKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPL--QGTIKAIHTEGSP-SPRLGHTSSLIGDHMFII 359 (1057)
Q Consensus 283 ~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~--t~~W~~l~~~~~P-~~R~~hs~v~~~~~Iyv~ 359 (1057)
.|.+|..++++.+++. |||+||... +.+++||+. +++|..++ ++| .+|.+|++++++++|||+
T Consensus 25 lP~~~~~~~~~~~~~~-----iyv~gG~~~-------~~~~~~d~~~~~~~W~~l~--~~p~~~r~~~~~v~~~~~IYV~ 90 (376)
T PRK14131 25 LPVPFKNGTGAIDNNT-----VYVGLGSAG-------TSWYKLDLNAPSKGWTKIA--AFPGGPREQAVAAFIDGKLYVF 90 (376)
T ss_pred CCcCccCCeEEEECCE-----EEEEeCCCC-------CeEEEEECCCCCCCeEECC--cCCCCCcccceEEEECCEEEEE
Confidence 4456777788888777 999999643 358899986 47899887 666 589999999999999999
Q ss_pred cccCC-C----CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEE-ECCEEEEEcccCCC-----------------
Q 036185 360 GGRAD-P----LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV-IGSKIYVFGGLNND----------------- 416 (1057)
Q Consensus 360 GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~-~~~~iyv~GG~~~~----------------- 416 (1057)
||... . ...++++|+||+.+++|+.++. ..|.++.+|++++ .+++||++||.+..
T Consensus 91 GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred cCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 99864 1 2357899999999999999972 3467778888877 79999999997632
Q ss_pred -----------------cccceEEEEECCCCcEEEeecCCCCCC-CcceeEEEEECCEEEEEecCCCC-cccCcEE--EE
Q 036185 417 -----------------TIFSSLHVLDTDTLQWKELLINGEGPC-ARHSHSMLAYGSRLYMFGGYNGE-KALGDLY--TF 475 (1057)
Q Consensus 417 -----------------~~~~~v~~yD~~t~~W~~~~~~g~~P~-~r~~~s~~~~~~~lyv~GG~~~~-~~~~~l~--~y 475 (1057)
...+++++||+.+++|+.+.+ +|. +|.+|+++.++++||++||.... ....+++ .|
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~ 245 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKF 245 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEe
Confidence 124789999999999999865 464 78889999999999999997432 2344555 45
Q ss_pred ECCCCeEEEeeccCCCCCCce--------eeEEEEECCEEEEEeccCCCC-----------------CCCeEEEEECCCC
Q 036185 476 DVHACLWKKEDIAARSPHARF--------SHTMFLYKNYLGLFGGCPVRQ-----------------NYQELSLLDLQLH 530 (1057)
Q Consensus 476 d~~t~~W~~v~~~~~~P~~R~--------~hs~~~~~~~l~i~GG~~~~~-----------------~~~~i~~yd~~~~ 530 (1057)
|+.+++|+.+ ..+|.+|. ++.++.++++|||+||.+... ....+++||++++
T Consensus 246 ~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~ 322 (376)
T PRK14131 246 TGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG 322 (376)
T ss_pred cCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC
Confidence 7789999987 45555542 344677899999999975321 0124678999999
Q ss_pred eEEEeeccCCCCCcccceEEEEeCCEEEEEeCCCccccCCceecccEEeec
Q 036185 531 IWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINL 581 (1057)
Q Consensus 531 ~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~~~~~~~~~dl 581 (1057)
+|+.++.++. ++..++++.++++|||+||... .+...+++..+++
T Consensus 323 ~W~~~~~lp~---~r~~~~av~~~~~iyv~GG~~~---~~~~~~~v~~~~~ 367 (376)
T PRK14131 323 KWQKVGELPQ---GLAYGVSVSWNNGVLLIGGETA---GGKAVSDVTLLSW 367 (376)
T ss_pred cccccCcCCC---CccceEEEEeCCEEEEEcCCCC---CCcEeeeEEEEEE
Confidence 9999875433 4667788889999999999643 1334555655555
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=299.60 Aligned_cols=252 Identities=28% Similarity=0.536 Sum_probs=228.7
Q ss_pred CCCCCccccEEEEECCEEEEEcccCCCCCCCC-cEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC-C
Q 036185 339 GSPSPRLGHTSSLIGDHMFIIGGRADPLNILS-DVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN-D 416 (1057)
Q Consensus 339 ~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~-~ 416 (1057)
..|.+|.+|+++.+++++|||||........+ ++|++|..+..|....++|..|.+|++|+++.++++||+|||.+. .
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 57999999999999999999999976544444 699999999999999999999999999999999999999999985 6
Q ss_pred cccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCc-ccCcEEEEECCCCeEEEeeccCCCCCCc
Q 036185 417 TIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEK-ALGDLYTFDVHACLWKKEDIAARSPHAR 495 (1057)
Q Consensus 417 ~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~-~~~~l~~yd~~t~~W~~v~~~~~~P~~R 495 (1057)
..+++++.||+.|.+|..+...+..|.+|.+|+++.+++++|||||.+... .+|++|+||+.+.+|.++.+.+..|.||
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR 215 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR 215 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC
Confidence 678999999999999999999999999999999999999999999998765 8999999999999999999999999999
Q ss_pred eeeEEEEECCEEEEEeccC-CCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEeCCCccccCCc-ee
Q 036185 496 FSHTMFLYKNYLGLFGGCP-VRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGT-KF 573 (1057)
Q Consensus 496 ~~hs~~~~~~~l~i~GG~~-~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~-~~ 573 (1057)
.+|+++.++++++++||.+ +...++|+|+||+.+.+|..+......+.+|..|+.+..+++++++||+... .. .+
T Consensus 216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~---~~~~l 292 (482)
T KOG0379|consen 216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP---KQEPL 292 (482)
T ss_pred CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccc---ccccc
Confidence 9999999999999999988 6778999999999999999888777788999999999999999999998653 23 56
Q ss_pred cccEEeeccccccccCCCCC
Q 036185 574 SEPVKINLSSVPLMSLDDCN 593 (1057)
Q Consensus 574 ~~~~~~dl~~~~~~~~~~~~ 593 (1057)
.+.+.+++.+..|.......
T Consensus 293 ~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 293 GDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccceeeeeccc
Confidence 78888888888887775554
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=7.1e-30 Score=274.96 Aligned_cols=253 Identities=22% Similarity=0.440 Sum_probs=216.2
Q ss_pred CcCcccccceEEEEECCccCCcEEEEEcccCCCC-CCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEEC-CEEEE
Q 036185 281 PVEKLFLWGHSACILGNSINDSQILVFGGFGGMG-RHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIG-DHMFI 358 (1057)
Q Consensus 281 ~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g-~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~-~~Iyv 358 (1057)
.++|.+|...+.++-... ..|++|||.-..+ .....||+|.||..+++|+.+..+..|+||+.|.++++. |.+|+
T Consensus 61 ~~~PspRsn~sl~~nPek---eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEK---EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred CCCCCCCCCcceeeccCc---ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE
Confidence 335566777777665443 5899999964433 234679999999999999999988999999999999985 89999
Q ss_pred EcccCC-C----CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC----CcccceEEEEECCC
Q 036185 359 IGGRAD-P----LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN----DTIFSSLHVLDTDT 429 (1057)
Q Consensus 359 ~GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~----~~~~~~v~~yD~~t 429 (1057)
|||.-. + .....|+|.||+.+++|+++...| .|.||++|-+++...+|++|||+.. -.++||+|+||+.+
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 999743 2 234689999999999999998765 8999999999999999999999854 35789999999999
Q ss_pred CcEEEeecCCCCCCCcceeEEEEE-CCEEEEEecCCC---------CcccCcEEEEECCC-----CeEEEeeccCCCCCC
Q 036185 430 LQWKELLINGEGPCARHSHSMLAY-GSRLYMFGGYNG---------EKALGDLYTFDVHA-----CLWKKEDIAARSPHA 494 (1057)
Q Consensus 430 ~~W~~~~~~g~~P~~r~~~s~~~~-~~~lyv~GG~~~---------~~~~~~l~~yd~~t-----~~W~~v~~~~~~P~~ 494 (1057)
.+|+.+.+.|..|.||++|++.+. ++.||++|||.- ....+|+|.+++.+ ..|+.+...+..|.|
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 999999998889999999999988 899999999842 35688999999998 789999999999999
Q ss_pred ceeeEEEEE-CCEEEEEeccCC---------CCCCCeEEEEECCCCeEEEeec
Q 036185 495 RFSHTMFLY-KNYLGLFGGCPV---------RQNYQELSLLDLQLHIWKHLKL 537 (1057)
Q Consensus 495 R~~hs~~~~-~~~l~i~GG~~~---------~~~~~~i~~yd~~~~~W~~v~~ 537 (1057)
|.++++++. +++-+.|||.-. ....|++|.||++.++|...+.
T Consensus 297 Rsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 297 RSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 999999988 568999999542 3358999999999999988643
No 26
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=7.5e-29 Score=301.47 Aligned_cols=264 Identities=14% Similarity=0.237 Sum_probs=219.4
Q ss_pred EEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEE
Q 036185 304 ILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWT 383 (1057)
Q Consensus 304 lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 383 (1057)
+++.||.+. ....+..|++.+++|..++ ..| .+..|+++++++.||++||........+++++||+.+++|.
T Consensus 253 ~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 253 IYIHITMSI-----FTYNYITNYSPLSEINTII--DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred eEeecccch-----hhceeeecchhhhhccccc--Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee
Confidence 555555431 2445667888888998875 333 24567899999999999999766567789999999999999
Q ss_pred EeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecC
Q 036185 384 LLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGY 463 (1057)
Q Consensus 384 ~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~ 463 (1057)
.++ ++|.+|..|++++++++||++||.++...++++++||+.+++|+.+++ +|.+|.+|+++.++++||++||.
T Consensus 325 ~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~~iYv~GG~ 398 (534)
T PHA03098 325 KVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNNLIYVIGGI 398 (534)
T ss_pred ECC---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC---cCcCCccceEEEECCEEEEECCc
Confidence 886 788999999999999999999999877788999999999999998866 68899999999999999999997
Q ss_pred C-CCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCC---CCCeEEEEECCCCeEEEeeccC
Q 036185 464 N-GEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQ---NYQELSLLDLQLHIWKHLKLNY 539 (1057)
Q Consensus 464 ~-~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~---~~~~i~~yd~~~~~W~~v~~~~ 539 (1057)
. +...++++++||+.+++|+.+ .++|.+|.+|+++.++++||++||.+... ..+.+++||+.+++|+.++.++
T Consensus 399 ~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 399 SKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN 475 (534)
T ss_pred CCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC
Confidence 4 334578999999999999987 57889999999999999999999976433 2567999999999999987543
Q ss_pred CCCCcccceEEEEeCCEEEEEeCCCccccCCceecccEEeeccccccccCCC
Q 036185 540 VCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMSLDD 591 (1057)
Q Consensus 540 ~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~~~~~~~~~dl~~~~~~~~~~ 591 (1057)
.++..++++..+++||++||.... ...+..+.+|..+..|.....
T Consensus 476 ---~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 476 ---FPRINASLCIFNNKIYVVGGDKYE----YYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ---cccccceEEEECCEEEEEcCCcCC----cccceeEEEeCCCCEEEecCC
Confidence 346677888899999999997542 234677889998888887754
No 27
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=291.29 Aligned_cols=210 Identities=19% Similarity=0.309 Sum_probs=186.4
Q ss_pred EEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcE
Q 036185 293 CILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDV 372 (1057)
Q Consensus 293 ~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v 372 (1057)
+.+++. ||++||.+. ....+.+++|||.+++|..++ ++|.+|..+++++++++||++||.++ .+++
T Consensus 268 ~~~~~~-----lyviGG~~~---~~~~~~v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~----~~sv 333 (480)
T PHA02790 268 THVGEV-----VYLIGGWMN---NEIHNNAIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPN----PTSV 333 (480)
T ss_pred EEECCE-----EEEEcCCCC---CCcCCeEEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCC----CCce
Confidence 346655 999999864 235688999999999999987 88999999999999999999999854 2679
Q ss_pred EEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 036185 373 WVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLA 452 (1057)
Q Consensus 373 ~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~ 452 (1057)
++||+.+++|+.++ ++|.+|..|++++++++||++||.++. .+.+++|||.+++|+.+++ +|.+|.+|++++
T Consensus 334 e~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~ 405 (480)
T PHA02790 334 ERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALV 405 (480)
T ss_pred EEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCC---CCCccccceEEE
Confidence 99999999999997 899999999999999999999998643 3679999999999999876 588999999999
Q ss_pred ECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeE
Q 036185 453 YGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIW 532 (1057)
Q Consensus 453 ~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W 532 (1057)
++++||++||. +.+||+.+++|+.+ +++|.+|..+++++++++||++||++.....+.+++||+++++|
T Consensus 406 ~~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 406 FGRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 99999999984 57899999999987 67889999999999999999999987655568899999999999
Q ss_pred EEe
Q 036185 533 KHL 535 (1057)
Q Consensus 533 ~~v 535 (1057)
+..
T Consensus 475 ~~~ 477 (480)
T PHA02790 475 NIW 477 (480)
T ss_pred Eec
Confidence 864
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=259.90 Aligned_cols=249 Identities=22% Similarity=0.418 Sum_probs=211.0
Q ss_pred CCCCCccccEEEEE--CCEEEEEcccCCC---CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEEC-CEEEEEcc
Q 036185 339 GSPSPRLGHTSSLI--GDHMFIIGGRADP---LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIG-SKIYVFGG 412 (1057)
Q Consensus 339 ~~P~~R~~hs~v~~--~~~Iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~-~~iyv~GG 412 (1057)
+.|+||.+.++++. .+.+++|||.--. ..+.|++|+||+.+++|..+... ..|+||+.|.++++. +.+|+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 67999999999887 4589999996322 24679999999999999999754 578999999999985 88999999
Q ss_pred cCCC------cccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC----cccCcEEEEECCCCeE
Q 036185 413 LNND------TIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE----KALGDLYTFDVHACLW 482 (1057)
Q Consensus 413 ~~~~------~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~----~~~~~l~~yd~~t~~W 482 (1057)
.-.+ -.+.|+|.||+.+++|+++...| .|.+|++|.|++...+|+||||+... .++||+|+||+.+-+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 6432 24689999999999999999866 69999999999999999999998532 5789999999999999
Q ss_pred EEeeccCCCCCCceeeEEEEE-CCEEEEEeccCC---------CCCCCeEEEEECCC-----CeEEEeeccCCCCCcccc
Q 036185 483 KKEDIAARSPHARFSHTMFLY-KNYLGLFGGCPV---------RQNYQELSLLDLQL-----HIWKHLKLNYVCKELFVR 547 (1057)
Q Consensus 483 ~~v~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~---------~~~~~~i~~yd~~~-----~~W~~v~~~~~~~~~~~~ 547 (1057)
+++.+.+..|.||.+|++++. ++.||++|||+- ....+|+|.++++. -.|+++.+....|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999998889999999999999 999999999862 23478999999999 789999988999999999
Q ss_pred eEEEEeC-CEEEEEeCCCc-----cccCCceecccEEeeccccccccC
Q 036185 548 STANVVD-DDLIMIGGGAA-----CYAFGTKFSEPVKINLSSVPLMSL 589 (1057)
Q Consensus 548 ~~a~~~~-~~iyi~GGg~~-----~~~~g~~~~~~~~~dl~~~~~~~~ 589 (1057)
.++++.. ++-|.|||-.. -.-.|.++|+.+.+|+....|...
T Consensus 300 fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 8888765 59999999532 123467888888888877666654
No 29
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=261.00 Aligned_cols=284 Identities=22% Similarity=0.246 Sum_probs=214.7
Q ss_pred CceeccchhhhcccCCCChhHHHHHHHHHHHhcCCCchHHhhcCCCceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHh
Q 036185 748 GATKQMDEAVEVKRAPKSPFKAMTEAVASLIEQKGLSARLLEQLPSRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAK 827 (1057)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~lp~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~ 827 (1057)
.++++..++++.+ ..+...+.++..+ |++ ++.|++|.+.|+++++++.....+-..-|++.+++ +
T Consensus 116 ~~~~i~~~~~L~y-----E~w~~keilRavl-----pe~--e~~~s~ft~~GhIaHLNl~~e~lpfk~iI~~Vi~D---K 180 (495)
T KOG2078|consen 116 ELEIIPHELELTY-----EYWKAKEILRAVL-----PEE--EDVPSSFTITGHIAHLNLRDEQLPFKRIIGQVIYD---K 180 (495)
T ss_pred cceeeccccccch-----hhhhHHHHHHhhC-----ccc--ccccccceeeeeeEEeeccchhccHHHHHHHHhhc---c
Confidence 4667766665443 2456666666664 665 66799999999999999887666655556666655 3
Q ss_pred HcCccEEE-cccccCCCCccccceEEEeeCCceEE-EEeCCEEEEEecceeEeeCCCHHHHHHHhhccCCCCEEEEecCc
Q 036185 828 ILNTSHLA-RQGRVAPTGTRDSALEILVGDNGWVK-HCENGILYSFDATKCMFSWGNLSEKLRMARLDCKDEVIVDLFAG 905 (1057)
Q Consensus 828 ~~~~~~i~-~~~~i~~~~~r~~~~~~l~G~~~~~~-~~e~gi~~~~d~~~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G 905 (1057)
..+++.++ +.+.| .+.+|..++++|+|+...++ ++|+|++|++|.+++||++++..|+.|+....+.|+.|.|+|||
T Consensus 181 ~n~~ktvv~K~~~I-tn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg~fk~gevv~D~FaG 259 (495)
T KOG2078|consen 181 NNLIKTVVNKIGRI-TNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEHERLSGLFKPGEVVCDVFAG 259 (495)
T ss_pred CCCceEeeecccch-hhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHHHHHhhccCCcchhhhhhcC
Confidence 33455555 44444 58899999999999998765 99999999999999999999999999999999999999999999
Q ss_pred ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCcc-EEEEeCCccccCCC-----------------------
Q 036185 906 IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDH-CIVLEGDNRFTAPK----------------------- 961 (1057)
Q Consensus 906 ~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~-v~~~~~D~~~~~~~----------------------- 961 (1057)
+|+|++++++ ++ .+|+|.|+||+++++++.|+++|+++.. +++++.|+.+++.+
T Consensus 260 vGPfa~Pa~k-K~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t 337 (495)
T KOG2078|consen 260 VGPFALPAAK-KG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIADEVLDKLMKKIGT 337 (495)
T ss_pred cCccccchhh-cC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhcCCchhhhHHHHHHhhhhhhhhcc
Confidence 9999999993 34 6899999999999999999999999865 99999999888730
Q ss_pred ----------------CCccEEEECCCCCChhHHHHHHHHhhCC-Cc-------EEEEEcccc---cchhHHHHHHHHHH
Q 036185 962 ----------------GVANRVCLGLIPTSENSWVTAVQALRSE-GG-------TLHVHGNVK---DSEEKLWAEHVSKS 1014 (1057)
Q Consensus 962 ----------------~~~D~Vil~~~P~~~~~~~~a~~~l~~~-gg-------~l~~~~~~~---~~~~~~~~~~~~~~ 1014 (1057)
...++|+||+ |..+-.+..+++..... |- ++|+|+|++ ..+. ..+.+..+
T Consensus 338 ~~~~~d~~p~~~~~~~~~i~hvvmnL-Pa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~s--~e~~V~ar 414 (495)
T KOG2078|consen 338 VVNKIDRIPQPFRTMQLHIVHVVMNL-PASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVSS--TEDLVTAR 414 (495)
T ss_pred cccccccCCCcccccchhhhhhhccC-hHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccCCCc--hHHHHHHH
Confidence 0126789999 88777777777665422 22 599999998 2211 11112222
Q ss_pred HHHHHHhcCCceeee-eeEEEEeEeecCCceEEEEEEEEeee
Q 036185 1015 IYEIARSEGHRWEVT-IEHIERVKWYAPHIRHLVADVGCRQI 1055 (1057)
Q Consensus 1015 i~~~~~~~g~~~~~~-~~~~~~Vk~~aP~~~h~~~d~~~~~~ 1055 (1057)
+ ....+..++.. +..+|.||.+||.+.|+|+.+++..+
T Consensus 415 ~---~~~~kv~~e~~~~~~~h~VR~VapnK~M~ca~~~lp~~ 453 (495)
T KOG2078|consen 415 I---VAALKVFAEDGALVSLHLVRKVAPNKEMYCASFQLPAN 453 (495)
T ss_pred H---HhhcceeeccccceeeeeeeccCCCcccchhhhhcHHH
Confidence 2 23344444432 34678899999999999999887643
No 30
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=5e-26 Score=258.90 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=190.5
Q ss_pred CCccccEEEEECCEEEEEcccCCCC---------CCCCcEEEEECCC--CcEEEeeccCCCCCcccceEEEEECCEEEEE
Q 036185 342 SPRLGHTSSLIGDHMFIIGGRADPL---------NILSDVWVFNMAK--SKWTLLECSGSVFQPRHRHAAAVIGSKIYVF 410 (1057)
Q Consensus 342 ~~R~~hs~v~~~~~Iyv~GG~~~~~---------~~~~~v~~yd~~t--~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~ 410 (1057)
..++++.++++++.|||+||.+.+. ...+++++|+..+ .+|..++ ++|.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence 4577899999999999999987643 2457899996333 3698886 889999989999999999999
Q ss_pred cccCCCcccceEEEEECCCCcEE-EeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccC
Q 036185 411 GGLNNDTIFSSLHVLDTDTLQWK-ELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAA 489 (1057)
Q Consensus 411 GG~~~~~~~~~v~~yD~~t~~W~-~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~ 489 (1057)
||.++...++++++||+.+++|+ .....+++|.+|..|++++++++||++||..+...++++++||+.+++|+.+ .
T Consensus 79 GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~---~ 155 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFEL---P 155 (323)
T ss_pred cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeEC---C
Confidence 99988778899999999999983 2233455799999999999999999999987666789999999999999997 4
Q ss_pred CCC-CCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCccc--ce-EEEEeCCEEEEEeCCCc
Q 036185 490 RSP-HARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFV--RS-TANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 490 ~~P-~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~--~~-~a~~~~~~iyi~GGg~~ 565 (1057)
++| .+|..|+++.++++||++||.+.. ...++++||+++++|+.++.+...+.++. .+ +++..+++||++||...
T Consensus 156 ~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 156 DFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 455 478899999999999999997643 34578999999999999986543333332 23 34445789999999753
Q ss_pred ccc------C------------------C----ceecccEEeeccccccccCCC
Q 036185 566 CYA------F------------------G----TKFSEPVKINLSSVPLMSLDD 591 (1057)
Q Consensus 566 ~~~------~------------------g----~~~~~~~~~dl~~~~~~~~~~ 591 (1057)
.-. + + ...+....+|..+.+|...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 235 DVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 100 0 0 012467889998888988764
No 31
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=4.6e-26 Score=264.16 Aligned_cols=235 Identities=18% Similarity=0.232 Sum_probs=184.7
Q ss_pred ccccceEEEEECCccCCcEEEEEcccCC-C--CCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEE-ECCEEEEEc
Q 036185 285 LFLWGHSACILGNSINDSQILVFGGFGG-M--GRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSL-IGDHMFIIG 360 (1057)
Q Consensus 285 ~~R~ghsa~~~~~~~~~~~lyvfGG~~~-~--g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~-~~~~Iyv~G 360 (1057)
.+|.+|+++.+++. |||+||+.. . +....++++++||+.+++|..++. ..|.++.+|++++ .+++||++|
T Consensus 73 ~~r~~~~~v~~~~~-----IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~G 146 (376)
T PRK14131 73 GPREQAVAAFIDGK-----LYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT-RSPVGLAGHVAVSLHNGKAYITG 146 (376)
T ss_pred CCcccceEEEECCE-----EEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC-CCCCcccceEEEEeeCCEEEEEC
Confidence 36899999999877 999999864 1 112357899999999999999873 3577788888877 799999999
Q ss_pred ccCCC---------------------------------CCCCCcEEEEECCCCcEEEeeccCCCCC-cccceEEEEECCE
Q 036185 361 GRADP---------------------------------LNILSDVWVFNMAKSKWTLLECSGSVFQ-PRHRHAAAVIGSK 406 (1057)
Q Consensus 361 G~~~~---------------------------------~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~hsa~~~~~~ 406 (1057)
|.... ....+++++||+.+++|+.++ ++|. +|..|+++.++++
T Consensus 147 G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~ 223 (376)
T PRK14131 147 GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK 223 (376)
T ss_pred CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE
Confidence 97531 013578999999999999986 6775 7888999999999
Q ss_pred EEEEcccCCC-cccceEE--EEECCCCcEEEeecCCCCCCCc--------ceeEEEEECCEEEEEecCCCCc--------
Q 036185 407 IYVFGGLNND-TIFSSLH--VLDTDTLQWKELLINGEGPCAR--------HSHSMLAYGSRLYMFGGYNGEK-------- 467 (1057)
Q Consensus 407 iyv~GG~~~~-~~~~~v~--~yD~~t~~W~~~~~~g~~P~~r--------~~~s~~~~~~~lyv~GG~~~~~-------- 467 (1057)
|||+||.... ....+++ .||+.+++|+.++.+ |.+| .++.+++++++||++||.+...
T Consensus 224 iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~ 300 (376)
T PRK14131 224 LWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNG 300 (376)
T ss_pred EEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcC
Confidence 9999997542 2334444 457789999999864 4444 2344677899999999975311
Q ss_pred ------cc---CcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCC-CCCCeEEEEECCCCeEEE
Q 036185 468 ------AL---GDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVR-QNYQELSLLDLQLHIWKH 534 (1057)
Q Consensus 468 ------~~---~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~-~~~~~i~~yd~~~~~W~~ 534 (1057)
.+ ..+.+||+.+++|+.+ +.+|.+|..++++.+++.|||+||.... ...+++++|++..+.|..
T Consensus 301 ~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 301 KLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 11 2467899999999987 6789999999999999999999997543 468899999999888764
No 32
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=6.8e-26 Score=260.42 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=179.7
Q ss_pred ccccceEEEEECCccCCcEEEEEcccCCCC---CCcccccEEEEeCCCCcEEEeccCCCCCCccccEEE-EECCEEEEEc
Q 036185 285 LFLWGHSACILGNSINDSQILVFGGFGGMG---RHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSS-LIGDHMFIIG 360 (1057)
Q Consensus 285 ~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g---~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v-~~~~~Iyv~G 360 (1057)
.+|.+|+++.+++. |||+||+.... ....++++++||+.+++|+.++. .+|.+|.+|+++ +++++||++|
T Consensus 52 ~~R~~~~~~~~~~~-----iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 52 GPRNQAVAAAIDGK-----LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTG 125 (346)
T ss_pred CCcccceEEEECCE-----EEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEc
Confidence 36899999999887 99999986421 12357899999999999999872 467788888777 6899999999
Q ss_pred ccCCCC---------------------------------CCCCcEEEEECCCCcEEEeeccCCCCC-cccceEEEEECCE
Q 036185 361 GRADPL---------------------------------NILSDVWVFNMAKSKWTLLECSGSVFQ-PRHRHAAAVIGSK 406 (1057)
Q Consensus 361 G~~~~~---------------------------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~hsa~~~~~~ 406 (1057)
|.+... ..++++++||+.+++|+.++ ++|. +|..|++++++++
T Consensus 126 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~ 202 (346)
T TIGR03547 126 GVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK 202 (346)
T ss_pred CcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE
Confidence 985310 12478999999999999997 7775 7899999999999
Q ss_pred EEEEcccCCCc-ccceEEEEE--CCCCcEEEeecCCCC----CCCcceeEEEEECCEEEEEecCCCC-------------
Q 036185 407 IYVFGGLNNDT-IFSSLHVLD--TDTLQWKELLINGEG----PCARHSHSMLAYGSRLYMFGGYNGE------------- 466 (1057)
Q Consensus 407 iyv~GG~~~~~-~~~~v~~yD--~~t~~W~~~~~~g~~----P~~r~~~s~~~~~~~lyv~GG~~~~------------- 466 (1057)
|||+||..... ...+++.|| +.+++|+.++++... +..+.+|++++++++||++||.+..
T Consensus 203 iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 282 (346)
T TIGR03547 203 LLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYA 282 (346)
T ss_pred EEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccc
Confidence 99999986533 234566665 577899999875221 1223567788899999999998521
Q ss_pred ----cccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCC-CCCCeEEEEE
Q 036185 467 ----KALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVR-QNYQELSLLD 526 (1057)
Q Consensus 467 ----~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~-~~~~~i~~yd 526 (1057)
..+..+.+||+.+++|+.+ +++|.+|..++++.++++||++||.+.. ...++++.|.
T Consensus 283 ~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 283 HEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 1124688999999999987 6789999999988999999999998653 4577887764
No 33
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=2.3e-25 Score=265.75 Aligned_cols=211 Identities=17% Similarity=0.248 Sum_probs=180.5
Q ss_pred EEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECC
Q 036185 349 SSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTD 428 (1057)
Q Consensus 349 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~ 428 (1057)
++..++.||++||.+. ....+++++||+.+++|..++ ++|.+|..+++++++++||++||.++. +++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC---CceEEEECC
Confidence 3458999999999865 356789999999999999998 889999999999999999999998642 579999999
Q ss_pred CCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEE
Q 036185 429 TLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLG 508 (1057)
Q Consensus 429 t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~ 508 (1057)
+++|+.+++ +|.+|.+|+++.++++||++||.++. .+.+.+|||.+++|+.+ +++|.+|..|+++.++++||
T Consensus 340 ~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~---~~m~~~r~~~~~~~~~~~IY 411 (480)
T PHA02790 340 DAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFG---PSTYYPHYKSCALVFGRRLF 411 (480)
T ss_pred CCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeC---CCCCCccccceEEEECCEEE
Confidence 999999876 68899999999999999999998653 36789999999999997 67889999999999999999
Q ss_pred EEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEeCCCccccCCceecccEEeecccccccc
Q 036185 509 LFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAACYAFGTKFSEPVKINLSSVPLMS 588 (1057)
Q Consensus 509 i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~~~~~g~~~~~~~~~dl~~~~~~~ 588 (1057)
++||. +.+||+++++|+.+++++ .+|..+++++++|+||++||... +...+.+..+|..+..|..
T Consensus 412 v~GG~--------~e~ydp~~~~W~~~~~m~---~~r~~~~~~v~~~~IYviGG~~~----~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 412 LVGRN--------AEFYCESSNTWTLIDDPI---YPRDNPELIIVDNKLLLIGGFYR----GSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EECCc--------eEEecCCCCcEeEcCCCC---CCccccEEEEECCEEEEECCcCC----CcccceEEEEECCCCeEEe
Confidence 99993 678999999999987653 35778899999999999999643 2223456678887777765
Q ss_pred C
Q 036185 589 L 589 (1057)
Q Consensus 589 ~ 589 (1057)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 4
No 34
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4e-26 Score=250.17 Aligned_cols=258 Identities=26% Similarity=0.423 Sum_probs=217.1
Q ss_pred CcEEEeccC--CCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEE
Q 036185 330 GTIKAIHTE--GSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKI 407 (1057)
Q Consensus 330 ~~W~~l~~~--~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~i 407 (1057)
-.|+++... +.|.||++|-++++..-|.||||-+ ....++++.|+..+++|....+.|+.|++...|..+..+.+|
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN--EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN--EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCc--ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 469988765 6788899999999999999999964 478899999999999999999999999999999999999999
Q ss_pred EEEcccCC-CcccceEEEEECCCCcEEEeec----CCCCCCCcceeEEEEECCEEEEEecCCC---------CcccCcEE
Q 036185 408 YVFGGLNN-DTIFSSLHVLDTDTLQWKELLI----NGEGPCARHSHSMLAYGSRLYMFGGYNG---------EKALGDLY 473 (1057)
Q Consensus 408 yv~GG~~~-~~~~~~v~~yD~~t~~W~~~~~----~g~~P~~r~~~s~~~~~~~lyv~GG~~~---------~~~~~~l~ 473 (1057)
|+|||.-. ..+.|++|.+......|.++.+ .|.+|+||-+|+...++++-|+|||..+ ..++||+|
T Consensus 95 lvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY 174 (830)
T KOG4152|consen 95 LVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLY 174 (830)
T ss_pred EEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceE
Confidence 99999765 6788999888888889998865 4678999999999999999999999743 25799999
Q ss_pred EEECCCC----eEEEeeccCCCCCCceeeEEEEE------CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCC
Q 036185 474 TFDVHAC----LWKKEDIAARSPHARFSHTMFLY------KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKE 543 (1057)
Q Consensus 474 ~yd~~t~----~W~~v~~~~~~P~~R~~hs~~~~------~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~ 543 (1057)
++++.-+ .|....+.|..|.+|.+|+++++ ..++||+||+++- .+.|+|.+|+++.+|.+.......+.
T Consensus 175 ~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~Pl 253 (830)
T KOG4152|consen 175 ILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPL 253 (830)
T ss_pred EEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCC
Confidence 9998854 49998889999999999999998 3479999998764 57899999999999999988888888
Q ss_pred cccceEEEEeCCEEEEEeCCCccccC-------C---ceecccEEeeccccccccCC
Q 036185 544 LFVRSTANVVDDDLIMIGGGAACYAF-------G---TKFSEPVKINLSSVPLMSLD 590 (1057)
Q Consensus 544 ~~~~~~a~~~~~~iyi~GGg~~~~~~-------g---~~~~~~~~~dl~~~~~~~~~ 590 (1057)
+|.-|++++++|+||||||+-.-.-. . -+.+..-.++|.+..|..+.
T Consensus 254 PRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 254 PRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred CcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 99999999999999999996211100 1 12223334667777776653
No 35
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=242.87 Aligned_cols=250 Identities=19% Similarity=0.192 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHhcCCCc-----hHHhhcCC-CceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHcC-ccEEEcccc
Q 036185 767 FKAMTEAVASLIEQKGLS-----ARLLEQLP-SRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILN-TSHLARQGR 839 (1057)
Q Consensus 767 ~~~~~~~l~~~l~~~~~~-----~~~l~~lp-~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~ 839 (1057)
+.+-++..++++...++. .+..+.+| .-.|+|||++|+|..+ +.++...+.+.+++.+.+. +..++.++.
T Consensus 79 l~~a~~~r~~~~~~~~~~a~Rl~~~e~dgl~Gl~vD~ygd~~vvq~~s---~~~~~~~~~i~~~l~~~~~~~~~v~e~s~ 155 (393)
T COG1092 79 LRKALKKRKKWLKQEDTDAYRLVNAEGDGLPGLTVDRYGDYLVVQLYS---AGIEIFKEAILEALAEAFPAPKGVYEKSD 155 (393)
T ss_pred HHHHHHHHHhhhhccCcceEEEEeccCCCCCCeEEEecCCEEEEEecc---cccccchHHHHHHHHHhhcccceeEeccc
Confidence 344445555666554421 22344566 5799999999999984 4444555777888888876 677776654
Q ss_pred cC-CCCcc-ccceEEEeeC-C-ceEEEEeCCEEEEEecc---eeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHH
Q 036185 840 VA-PTGTR-DSALEILVGD-N-GWVKHCENGILYSFDAT---KCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLP 912 (1057)
Q Consensus 840 i~-~~~~r-~~~~~~l~G~-~-~~~~~~e~gi~~~~d~~---~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~ 912 (1057)
+. .+..| ......++|+ . ..+.+.|||++|.+|+. +++|+.++...|.++...+. |++|||+||+||+||++
T Consensus 156 ~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~ 234 (393)
T COG1092 156 VRLRRREGLKGRSQYLKGEEAPEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVH 234 (393)
T ss_pred hhhhhhhcccccccccccccCCCcEEEEeCCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHH
Confidence 32 01111 1234456773 3 34568899999999986 78899999999988888888 99999999999999999
Q ss_pred HHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCC-ccEEEEeCCccccCC-----CCCccEEEECCCCCChhH--------
Q 036185 913 FLVRAKARLVYACEWNPCAVEALKHNLQANSVS-DHCIVLEGDNRFTAP-----KGVANRVCLGLIPTSENS-------- 978 (1057)
Q Consensus 913 ~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~-~~v~~~~~D~~~~~~-----~~~~D~Vil~~~P~~~~~-------- 978 (1057)
|| ..||++|+.||++..|++.+++|+++|+++ +++.++++|+++++. +.+||+||+|| |++...
T Consensus 235 Aa-~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDP-PsF~r~k~~~~~~~ 312 (393)
T COG1092 235 AA-LGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDP-PSFARSKKQEFSAQ 312 (393)
T ss_pred HH-hcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECC-cccccCcccchhHH
Confidence 98 688989999999999999999999999986 468999999999986 45899999999 987433
Q ss_pred ------HHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCcee
Q 036185 979 ------WVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWE 1027 (1057)
Q Consensus 979 ------~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 1027 (1057)
+..++++|+ +||+|.+++|++..++ +.+++.|.+++...|+.++
T Consensus 313 rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~~----~~f~~~i~~a~~~~~~~~~ 362 (393)
T COG1092 313 RDYKDLNDLALRLLA-PGGTLVTSSCSRHFSS----DLFLEIIARAAAAAGRRAQ 362 (393)
T ss_pred HHHHHHHHHHHHHcC-CCCEEEEEecCCccCH----HHHHHHHHHHHHhcCCcEE
Confidence 666777777 7999999999998766 5557888888888887653
No 36
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.92 E-value=9.5e-24 Score=242.72 Aligned_cols=240 Identities=16% Similarity=0.183 Sum_probs=183.8
Q ss_pred hcCC-CceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHcCccEEEcccccCC--CCccccceEEEeeCC-c-eEEEE
Q 036185 789 EQLP-SRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQGRVAP--TGTRDSALEILVGDN-G-WVKHC 863 (1057)
Q Consensus 789 ~~lp-~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~i~~--~~~r~~~~~~l~G~~-~-~~~~~ 863 (1057)
+.|| .--|+|||++++|+. +..++...+.|.+++.+.++.+.++.++++.. .+.......+++|+. + ..++.
T Consensus 110 DglpGliVD~y~d~~vvq~~---~~~~~~~~~~i~~aL~~~~~~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~ 186 (396)
T PRK15128 110 DGLPGITIDRFGNFLVLQLL---SAGAEYQRAALISALQTLYPECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIE 186 (396)
T ss_pred CCCCcEEEEEECCEEEEEEC---cHHHHHhHHHHHHHHHHHcCCcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEE
Confidence 3455 368999999999988 45567778889999999888777776655321 111223456789985 3 35588
Q ss_pred eCCEEEEEecc---eeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHH
Q 036185 864 ENGILYSFDAT---KCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQ 940 (1057)
Q Consensus 864 e~gi~~~~d~~---~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~ 940 (1057)
|||++|.+|+. +++|+.++...|..+.. ..+|++|||+|||+|+|++.++ ..++.+|+++|+|+.|++.+++|++
T Consensus 187 E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa-~~ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 187 EHGMKLLVDIQGGHKTGYYLDQRDSRLATRR-YVENKRVLNCFSYTGGFAVSAL-MGGCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred ECCEEEEEecccccccCcChhhHHHHHHHHH-hcCCCeEEEeccCCCHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHH
Confidence 99999999996 46666666666655544 4568999999999999999877 4678899999999999999999999
Q ss_pred HcCCC-ccEEEEeCCccccCC-----CCCccEEEECCCCCChhH--------------HHHHHHHhhCCCcEEEEEcccc
Q 036185 941 ANSVS-DHCIVLEGDNRFTAP-----KGVANRVCLGLIPTSENS--------------WVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 941 ~N~~~-~~v~~~~~D~~~~~~-----~~~~D~Vil~~~P~~~~~--------------~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|+++ ++++++++|+++++. ...||+||+|| |++... +..|+++|+ +||+|++++|++
T Consensus 265 ~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP-P~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~ 342 (396)
T PRK15128 265 LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP-PKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSG 342 (396)
T ss_pred HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC-CCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCC
Confidence 99996 479999999999863 34799999999 765321 234566776 799999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 1001 DSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 1001 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
..+. +++.+.+.+++.+.|++++ .+...+++.+|-
T Consensus 343 ~~~~----~~f~~~v~~aa~~~~~~~~-------~l~~~~~~~DhP 377 (396)
T PRK15128 343 LMTS----DLFQKIIADAAIDAGRDVQ-------FIEQFRQAADHP 377 (396)
T ss_pred cCCH----HHHHHHHHHHHHHcCCeEE-------EEEEcCCCCCCC
Confidence 8765 5668889999999988643 344555555553
No 37
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.90 E-value=2.6e-23 Score=226.71 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=153.6
Q ss_pred ceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHcCccEEEcc--cccCCCCcc---ccceEEEeeCCce-EEEEeCCE
Q 036185 794 RWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQ--GRVAPTGTR---DSALEILVGDNGW-VKHCENGI 867 (1057)
Q Consensus 794 ~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~--~~i~~~~~r---~~~~~~l~G~~~~-~~~~e~gi 867 (1057)
--|+|||.++||.. .+.++...++|.+++............ ..+. -..| ....++++|+.+. .++.|||+
T Consensus 18 ~VD~y~~~lvvq~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~~-~~~r~~~~~~~~~l~G~~~~~~~v~E~gl 93 (286)
T PF10672_consen 18 TVDRYGDVLVVQLY---SEGMERFLDELREALEALIPPGIYEKKQGRSIV-LRKREKEGAPSEVLYGEPPEFFTVEENGL 93 (286)
T ss_dssp EEEEETTEEEEEE----SHHHHCTHHHHHHHHHHHHCCCECEEEEGGGCC-CCHHTTTT-EEEEEESS-SSEEEEEETTE
T ss_pred EEEEECCEEEEEEC---CcChHHHHHHHHHHHHHHhhcceeeecccccee-ehhhhccCCCceEEecCCCCceEEEECCE
Confidence 57899999999988 455666677777777665433222211 1111 0111 2345678998764 45889999
Q ss_pred EEEEecc---eeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC
Q 036185 868 LYSFDAT---KCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV 944 (1057)
Q Consensus 868 ~~~~d~~---~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~ 944 (1057)
+|.+|+. +++|+.++...|.++... ..|++|||+||++|+||+.|| +.||++|++||.+..|++.+++|+++|++
T Consensus 94 ~f~v~l~~gqktGlFlDqR~nR~~v~~~-~~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~lNg~ 171 (286)
T PF10672_consen 94 KFRVDLTDGQKTGLFLDQRENRKWVRKY-AKGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAALNGL 171 (286)
T ss_dssp EEEEESSSSSSTSS-GGGHHHHHHHHHH-CTTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEEEcCCCCcceEcHHHHhhHHHHHHH-cCCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 9999995 688888888888777665 568999999999999999987 68899999999999999999999999998
Q ss_pred C-ccEEEEeCCccccCC----CCCccEEEECCCCCChh-----------HHHHHHHHhhCCCcEEEEEcccccchhHHHH
Q 036185 945 S-DHCIVLEGDNRFTAP----KGVANRVCLGLIPTSEN-----------SWVTAVQALRSEGGTLHVHGNVKDSEEKLWA 1008 (1057)
Q Consensus 945 ~-~~v~~~~~D~~~~~~----~~~~D~Vil~~~P~~~~-----------~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~ 1008 (1057)
+ ++++++++|+++++. ..+||+||+|| |++.+ .+..++++|+ +||+|.+++|++..+.
T Consensus 172 ~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP-PsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs~~i~~---- 245 (286)
T PF10672_consen 172 DLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP-PSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCSHHISP---- 245 (286)
T ss_dssp CCTCEEEEES-HHHHHHHHHHTT-EEEEEE---SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--TTS-H----
T ss_pred CccceEEEecCHHHHHHHHhcCCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCcccCH----
Confidence 6 589999999999774 46899999999 87632 2566777777 7999999999998765
Q ss_pred HHHHHHHHHHHH
Q 036185 1009 EHVSKSIYEIAR 1020 (1057)
Q Consensus 1009 ~~~~~~i~~~~~ 1020 (1057)
+.+++.+.+.+.
T Consensus 246 ~~l~~~~~~~a~ 257 (286)
T PF10672_consen 246 DFLLEAVAEAAR 257 (286)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 344666666654
No 38
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.83 E-value=2e-19 Score=222.78 Aligned_cols=254 Identities=16% Similarity=0.132 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHhcCCC------chHHhhcCCCceEEeCCEEEEccCCCCC----chhhhHHhhHHHHHHhHc--CccEE
Q 036185 767 FKAMTEAVASLIEQKGL------SARLLEQLPSRWERLGDIVVLPVTSFKD----PVWDSIGGELWPAVAKIL--NTSHL 834 (1057)
Q Consensus 767 ~~~~~~~l~~~l~~~~~------~~~~l~~lp~~~d~~gdi~vl~~~~~~~----~~~~~~~~~l~~~l~~~~--~~~~i 834 (1057)
+.+.++..++++...+. +.+ |+++..--|+|||+++||+++... ..++...+.|++++.+.+ +.+.|
T Consensus 399 ~~~a~~~r~~~~~~~~~~~~Rl~~~e-lp~~gl~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i 477 (702)
T PRK11783 399 LRKNLKKLKKWAKQEGIECYRLYDAD-LPEYNVAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKV 477 (702)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEEecC-CCccCeEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 33444455555533332 223 443236899999999999986541 126677888888888884 44566
Q ss_pred EcccccCCCCccccceEEEeeCCce-EEEEeCCEEEEEecc---eeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhH
Q 036185 835 ARQGRVAPTGTRDSALEILVGDNGW-VKHCENGILYSFDAT---KCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFV 910 (1057)
Q Consensus 835 ~~~~~i~~~~~r~~~~~~l~G~~~~-~~~~e~gi~~~~d~~---~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fs 910 (1057)
+.+.+.. .... .+...+ |+.+. .++.|||++|.+|+. +++|+.++...|..+... .+|++|||+|||+|+|+
T Consensus 478 ~~k~~~~-~~g~-~~~~~~-g~~~~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~-~~g~rVLDlf~gtG~~s 553 (702)
T PRK11783 478 VLKTRER-QKGK-NQYQKL-AEKGEFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQM-AKGKDFLNLFAYTGTAS 553 (702)
T ss_pred EEEeehh-ccCc-chhhhc-cCCCceEEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHh-cCCCeEEEcCCCCCHHH
Confidence 6553321 1111 111112 55333 458899999999986 566766666666665554 46889999999999999
Q ss_pred HHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCC-ccEEEEeCCccccCC--CCCccEEEECCCCCCh-----------
Q 036185 911 LPFLVRAKARLVYACEWNPCAVEALKHNLQANSVS-DHCIVLEGDNRFTAP--KGVANRVCLGLIPTSE----------- 976 (1057)
Q Consensus 911 l~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~-~~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~~----------- 976 (1057)
+.+| +.|+++|++||+++.|++.+++|+++|+++ ++++++++|+++++. ...||+||+|| |++.
T Consensus 554 l~aa-~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP-P~f~~~~~~~~~~~~ 631 (702)
T PRK11783 554 VHAA-LGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP-PTFSNSKRMEDSFDV 631 (702)
T ss_pred HHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC-CCCCCCCccchhhhH
Confidence 9998 467888999999999999999999999997 589999999998764 45799999999 7642
Q ss_pred -----hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceE
Q 036185 977 -----NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRH 1045 (1057)
Q Consensus 977 -----~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h 1045 (1057)
..+..+.++|+ +||+|++.+|.+.... ..+++.+.|+.+ +.+....+..+|
T Consensus 632 ~~~y~~l~~~a~~lL~-~gG~l~~~~~~~~~~~----------~~~~~~~~g~~~-------~~i~~~~~~~Dh 687 (702)
T PRK11783 632 QRDHVALIKDAKRLLR-PGGTLYFSNNKRGFKM----------DEEGLAKLGLKA-------EEITAKTLPPDF 687 (702)
T ss_pred HHHHHHHHHHHHHHcC-CCCEEEEEeCCccCCh----------hHHHHHhCCCeE-------EEEecCCCCCCC
Confidence 12556677777 7999999888765422 145566677753 334445555544
No 39
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.1e-17 Score=188.01 Aligned_cols=248 Identities=21% Similarity=0.274 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHhcCCCch-------HHhhcCCCceEEeCCEEEEccCCCCCchhhhHHhhHHHHHHhHcCccEEEccc
Q 036185 766 PFKAMTEAVASLIEQKGLSA-------RLLEQLPSRWERLGDIVVLPVTSFKDPVWDSIGGELWPAVAKILNTSHLARQG 838 (1057)
Q Consensus 766 ~~~~~~~~l~~~l~~~~~~~-------~~l~~lp~~~d~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~ 838 (1057)
..+.+...+++++.+.+++. +.++.+..+-.. +++++-+... .+.|++..+.+.+.+....++...+.+.
T Consensus 162 ~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~~~~g~--~~~i~~v~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 238 (432)
T COG2265 162 RSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQ--EVMVRLVTKH-LPELEQALRELLEAFPEIKGIVQNINRA 238 (432)
T ss_pred hHHHHHHHHHHHHHHcCCCccchhhccceEEEEEeccCc--eEEEEEEecc-chhHHHHHHHHHHhhhhcceEEEEecCC
Confidence 46677788888888776651 333333222222 3555544422 3446666666666665554443333333
Q ss_pred ccCCCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHHhhc------cCCCCEEEEecCcccHhHHH
Q 036185 839 RVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMARL------DCKDEVIVDLFAGIGYFVLP 912 (1057)
Q Consensus 839 ~i~~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~~~~------~~~g~~VlDlf~G~G~fsl~ 912 (1057)
. .+...+.+..+++|... .+| |+.|.+.+..| .+-|...-..|+.. ..++++|||||||+|.|||+
T Consensus 239 ~--~~~i~g~~~~~~~~~~~---i~e-~~~~~~~~~sF--~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~ 310 (432)
T COG2265 239 K--TNVIEGDEEITLYGLES---IRE-GVSFQISPRSF--FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLP 310 (432)
T ss_pred C--CceEEcceeEEEecccc---ccc-ceEEEeCCCCc--eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhh
Confidence 2 23345556666776541 223 89999999853 45555555555543 24678999999999999999
Q ss_pred HHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC----CCccEEEECCCCCC-hh-HHHHHHHHh
Q 036185 913 FLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK----GVANRVCLGLIPTS-EN-SWVTAVQAL 986 (1057)
Q Consensus 913 ~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~----~~~D~Vil~~~P~~-~~-~~~~a~~~l 986 (1057)
+| .++++|+|+|++|+|++.|++||+.|+++ |+.|+.+|++++... ..+|.|++|| |-. .. .+...+..+
T Consensus 311 lA--~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~~~~~~~~d~VvvDP-PR~G~~~~~lk~l~~~ 386 (432)
T COG2265 311 LA--KRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPAWWEGYKPDVVVVDP-PRAGADREVLKQLAKL 386 (432)
T ss_pred hc--ccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhhccccCCCCEEEECC-CCCCCCHHHHHHHHhc
Confidence 98 77889999999999999999999999998 599999999999863 3789999999 543 33 566666666
Q ss_pred hCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeec--CCceEE
Q 036185 987 RSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYA--PHIRHL 1046 (1057)
Q Consensus 987 ~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~a--P~~~h~ 1046 (1057)
. +..++|++|+...- .+.+.. +...|+. +++|..+. |+..|+
T Consensus 387 ~-p~~IvYVSCNP~Tl---------aRDl~~-L~~~gy~-------i~~v~~~DmFP~T~Hv 430 (432)
T COG2265 387 K-PKRIVYVSCNPATL---------ARDLAI-LASTGYE-------IERVQPFDMFPHTHHV 430 (432)
T ss_pred C-CCcEEEEeCCHHHH---------HHHHHH-HHhCCeE-------EEEEEEeccCCCcccc
Confidence 6 68899999997531 223333 3445553 34555555 888876
No 40
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.65 E-value=1.2e-14 Score=167.75 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHhcCCCc-------hHHhhcCCCceE-EeCCEEEEccCCCCCchhhhHHhhHHHHHHhH-cCccEEE-
Q 036185 766 PFKAMTEAVASLIEQKGLS-------ARLLEQLPSRWE-RLGDIVVLPVTSFKDPVWDSIGGELWPAVAKI-LNTSHLA- 835 (1057)
Q Consensus 766 ~~~~~~~~l~~~l~~~~~~-------~~~l~~lp~~~d-~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~i~- 835 (1057)
.++.+...+++++.+.+++ +++++++-.|.+ .-|+++++-+.... ..+..+ ..+++.+.+. ..+..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~~~~~~v~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~ 170 (374)
T TIGR02085 93 SFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTESENSGQLMLRFVLRSE-TKLAQI-RRALPWLIEQLPQLEVISV 170 (374)
T ss_pred hHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEeccCCCEEEEEEECCC-ccchhH-HHHHHHHHHHCCCcEEEEE
Confidence 3556667777877655442 456776655554 35666655433211 111111 2222323222 2332332
Q ss_pred cccccCCCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHHhhc----c--CCCCEEEEecCcccHh
Q 036185 836 RQGRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMARL----D--CKDEVIVDLFAGIGYF 909 (1057)
Q Consensus 836 ~~~~i~~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~~~~----~--~~g~~VlDlf~G~G~f 909 (1057)
...+...+.....+..+++|++...+ .-.|++|.+.+..| ++-+......++.. + .++.+|||||||+|.|
T Consensus 171 ~~~~~~~~~~~g~~~~~l~G~~~i~e-~~~g~~~~~~~~~F--~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~ 247 (374)
T TIGR02085 171 NIQPVHMAILEGEEEIFLTEQQALPE-RFNDVPLVIRPQSF--FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGF 247 (374)
T ss_pred EECCCCCCceECceEEEEcCCCeeEE-EECCEEEEECCCcc--ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHH
Confidence 11111111222334556788754332 23589999999875 45555555444432 2 3578999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECCCCCC--hhHHHHHHHH
Q 036185 910 VLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGLIPTS--ENSWVTAVQA 985 (1057)
Q Consensus 910 sl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~--~~~~~~a~~~ 985 (1057)
++++| ..+++|+|+|+|+.|++.+++|++.|+++ +++++++|+.+++. ...||+|++|| |.. ......++..
T Consensus 248 ~l~la--~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DP-Pr~G~~~~~l~~l~~ 323 (374)
T TIGR02085 248 GLHCA--GPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNP-PRRGIGKELCDYLSQ 323 (374)
T ss_pred HHHHh--hcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECC-CCCCCcHHHHHHHHh
Confidence 99998 34468999999999999999999999997 79999999988764 24599999999 764 2233344444
Q ss_pred hhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 986 LRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 986 l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
+. +++++++.++... + .+.+..+ .|+++ .+++.| +.-|+..|+
T Consensus 324 ~~-p~~ivyvsc~p~T-----l----aRDl~~L---~gy~l----~~~~~~-DmFPqT~Hv 366 (374)
T TIGR02085 324 MA-PKFILYSSCNAQT-----M----AKDIAEL---SGYQI----ERVQLF-DMFPHTSHY 366 (374)
T ss_pred cC-CCeEEEEEeCHHH-----H----HHHHHHh---cCceE----EEEEEe-ccCCCCCcE
Confidence 44 6788888776432 2 2223333 46643 234433 556788876
No 41
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.64 E-value=1.1e-14 Score=172.04 Aligned_cols=253 Identities=18% Similarity=0.251 Sum_probs=155.1
Q ss_pred hHHHHHHHHHHHhcCCCc-------hHHhhcCCCceE-EeCCEEEEccCCCC-CchhhhHHhhHHHHHHhHc-CccEEEc
Q 036185 767 FKAMTEAVASLIEQKGLS-------ARLLEQLPSRWE-RLGDIVVLPVTSFK-DPVWDSIGGELWPAVAKIL-NTSHLAR 836 (1057)
Q Consensus 767 ~~~~~~~l~~~l~~~~~~-------~~~l~~lp~~~d-~~gdi~vl~~~~~~-~~~~~~~~~~l~~~l~~~~-~~~~i~~ 836 (1057)
++.+...+++++.+.+++ .+.++++..|.+ .-|+++++-++... .+.++ .+.+.+.+.+ .+..+..
T Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~~~~~~v~~~~~~~~~~~~~----~~~~~l~~~~~~v~~v~~ 229 (431)
T TIGR00479 154 LNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIGRRTGELLLVLRTALEGFPHKE----ELALELQERYPDVKSICQ 229 (431)
T ss_pred HHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEeccCCCEEEEEEECCCccccHH----HHHHHHHHhCCCceEEEE
Confidence 455666677776655442 355666655655 35666665443211 12222 2333343332 3434432
Q ss_pred c-cccCCCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHHhh----c--cCCCCEEEEecCcccHh
Q 036185 837 Q-GRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMAR----L--DCKDEVIVDLFAGIGYF 909 (1057)
Q Consensus 837 ~-~~i~~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~~~----~--~~~g~~VlDlf~G~G~f 909 (1057)
+ .....+.....+..+++|+..... ..+|++|.+++..+ ++.|...-..++. . ..++++|||+|||+|.|
T Consensus 230 ~~~~~~~~~~~g~~~~~l~G~~~~~~-~~~~~~~~~~~~~F--~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~ 306 (431)
T TIGR00479 230 NINPEKTNVIFGEETEQIAGEGPIYE-KSGDLSFSLSARDF--FQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTF 306 (431)
T ss_pred EeCCCCCCeeeCCceEEEeCCCeEEE-EECCEEEEECCCce--eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHH
Confidence 2 111112233456788899865433 35699999998863 3444433322222 2 35678999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCccEEEECCCCCC--hhHHHHH
Q 036185 910 VLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANRVCLGLIPTS--ENSWVTA 982 (1057)
Q Consensus 910 sl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~Vil~~~P~~--~~~~~~a 982 (1057)
++++| ..+++|+|+|+|+.|++.+++|++.|+++ +++++++|+.+.++ ...||+|++|| |.. ...+..+
T Consensus 307 sl~la--~~~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP-Pr~G~~~~~l~~ 382 (431)
T TIGR00479 307 TLPLA--KQAKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDP-PRKGCAAEVLRT 382 (431)
T ss_pred HHHHH--HhCCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECc-CCCCCCHHHHHH
Confidence 99998 44678999999999999999999999996 79999999987653 23689999999 754 2344455
Q ss_pred HHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 983 VQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 983 ~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
+..++ ++++++++++ +.. + ...+. ...+.|+.+ ..++.| +--|+.+|+
T Consensus 383 l~~l~-~~~ivyvsc~-p~t----l----ard~~-~l~~~gy~~----~~~~~~-DmFP~T~Hv 430 (431)
T TIGR00479 383 IIELK-PERIVYVSCN-PAT----L----ARDLE-FLCKEGYGI----TWVQPV-DMFPHTAHV 430 (431)
T ss_pred HHhcC-CCEEEEEcCC-HHH----H----HHHHH-HHHHCCeeE----EEEEEe-ccCCCCCCC
Confidence 55566 5777777655 321 1 12222 233456643 233333 556888775
No 42
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.62 E-value=4.1e-14 Score=160.04 Aligned_cols=225 Identities=14% Similarity=0.090 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHHhcCCCc-------hHHhhcCCCceE-EeCCEEEEccCCCCCchhhhHHhhHHHHHHhH-cCccEEE-
Q 036185 766 PFKAMTEAVASLIEQKGLS-------ARLLEQLPSRWE-RLGDIVVLPVTSFKDPVWDSIGGELWPAVAKI-LNTSHLA- 835 (1057)
Q Consensus 766 ~~~~~~~~l~~~l~~~~~~-------~~~l~~lp~~~d-~~gdi~vl~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~i~- 835 (1057)
.++.+...+++++++.+++ ++.++++-.|-+ .-|+++++.++... ...... ..+.+.+.+. ..+..+.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~~~~~~~~v~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~ 110 (315)
T PRK03522 33 SFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGELMLRFVLRSE-TKLARL-RRALPWLQAQLPQLKVISV 110 (315)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEeecCCCCEEEEEEECCC-ccchhH-HHHHHHHHHHCCCCEEEEE
Confidence 3556667777877665542 355666654543 25666665433211 111111 1222333222 2232332
Q ss_pred cccccCCCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHHhh----cc--CCCCEEEEecCcccHh
Q 036185 836 RQGRVAPTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRMAR----LD--CKDEVIVDLFAGIGYF 909 (1057)
Q Consensus 836 ~~~~i~~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~~~----~~--~~g~~VlDlf~G~G~f 909 (1057)
...+...+.....+...++|...+.+.. +|+.|.+.+..+ ++.|......++. .+ .++.+|||+|||+|.|
T Consensus 111 ~~~~~~~~~~~g~~~~~l~g~~~~~~~~-~~~~~~~~~~sF--~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~ 187 (315)
T PRK03522 111 NIQPVHMAILEGEEEIFLTEQQALPERF-NGVPLFIRPQSF--FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGF 187 (315)
T ss_pred EECCCCCCcccCCceEEEeCCCeEEEEE-CCEEEEECCCee--eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHH
Confidence 1111111222233456678876554433 588999998764 4555443333332 22 2578999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECCCCCC--hhHHHHHHHH
Q 036185 910 VLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGLIPTS--ENSWVTAVQA 985 (1057)
Q Consensus 910 sl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~--~~~~~~a~~~ 985 (1057)
++++| . .+++|+|+|+|+.|++.+++|++.|+++ +++++++|+.++.. ...||.|++|| |.. ...+...+..
T Consensus 188 sl~la-~-~~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dP-Pr~G~~~~~~~~l~~ 263 (315)
T PRK03522 188 GLHCA-T-PGMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNP-PRRGIGKELCDYLSQ 263 (315)
T ss_pred HHHHH-h-cCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECC-CCCCccHHHHHHHHH
Confidence 99998 3 3468999999999999999999999995 79999999988753 24699999999 654 2233344433
Q ss_pred hhCCCcEEEEEcccc
Q 036185 986 LRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 986 l~~~gg~l~~~~~~~ 1000 (1057)
+. +++++++.++..
T Consensus 264 ~~-~~~ivyvsc~p~ 277 (315)
T PRK03522 264 MA-PRFILYSSCNAQ 277 (315)
T ss_pred cC-CCeEEEEECCcc
Confidence 44 466777666654
No 43
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.60 E-value=1e-13 Score=149.68 Aligned_cols=252 Identities=17% Similarity=0.286 Sum_probs=181.5
Q ss_pred EEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCC--CcEEEeccCCCC-CCccccEEEEECCEEEEEcccCCC--
Q 036185 291 SACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQ--GTIKAIHTEGSP-SPRLGHTSSLIGDHMFIIGGRADP-- 365 (1057)
Q Consensus 291 sa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t--~~W~~l~~~~~P-~~R~~hs~v~~~~~Iyv~GG~~~~-- 365 (1057)
+...+++. +||-=|..+ ...|.+|+.. ..|+.++ ..| .+|.+..+++++++||+|||....
T Consensus 41 ~Ga~ig~~-----~YVGLGs~G-------~afy~ldL~~~~k~W~~~a--~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~ 106 (381)
T COG3055 41 AGALIGDT-----VYVGLGSAG-------TAFYVLDLKKPGKGWTKIA--DFPGGARNQAVAAVIGGKLYVFGGYGKSVS 106 (381)
T ss_pred ccceecce-----EEEEeccCC-------ccceehhhhcCCCCceEcc--cCCCcccccchheeeCCeEEEeeccccCCC
Confidence 44455555 888766333 4678888765 5799998 444 678889999999999999998532
Q ss_pred --CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCC--------------------------
Q 036185 366 --LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNND-------------------------- 416 (1057)
Q Consensus 366 --~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~-------------------------- 416 (1057)
-...+++|+||+.+++|.++.+. .|....+++++.+++ ++|++||++..
T Consensus 107 ~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~y 184 (381)
T COG3055 107 SSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHY 184 (381)
T ss_pred CCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHH
Confidence 24579999999999999999853 566678899999988 89999998620
Q ss_pred --------cccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCC-CCcccCcEEEEECC--CCeEEEe
Q 036185 417 --------TIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYN-GEKALGDLYTFDVH--ACLWKKE 485 (1057)
Q Consensus 417 --------~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~-~~~~~~~l~~yd~~--t~~W~~v 485 (1057)
.....++.|||.+++|+.+... .-.++++.+.+.-++++.++-|.- ..-....+++++.. ..+|..+
T Consensus 185 f~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l 262 (381)
T COG3055 185 FDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKL 262 (381)
T ss_pred hCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeec
Confidence 1235688999999999998643 234667766666678788888863 33345567777776 4579987
Q ss_pred eccCCC----CCCceeeEEEEECCEEEEEeccCC-------------------CCCCCeEEEEECCCCeEEEeeccCCCC
Q 036185 486 DIAARS----PHARFSHTMFLYKNYLGLFGGCPV-------------------RQNYQELSLLDLQLHIWKHLKLNYVCK 542 (1057)
Q Consensus 486 ~~~~~~----P~~R~~hs~~~~~~~l~i~GG~~~-------------------~~~~~~i~~yd~~~~~W~~v~~~~~~~ 542 (1057)
...+.. +....++-+-..++.+++.||.+. ....++||.|| .+.|+.+...+.
T Consensus 263 ~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~-- 338 (381)
T COG3055 263 SDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ-- 338 (381)
T ss_pred cCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC--
Confidence 332211 122334445556888999999541 12367899998 999999875544
Q ss_pred CcccceEEEEeCCEEEEEeCCCc
Q 036185 543 ELFVRSTANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 543 ~~~~~~~a~~~~~~iyi~GGg~~ 565 (1057)
.+....++..++.+|++||...
T Consensus 339 -~l~YG~s~~~nn~vl~IGGE~~ 360 (381)
T COG3055 339 -GLAYGVSLSYNNKVLLIGGETS 360 (381)
T ss_pred -CccceEEEecCCcEEEEccccC
Confidence 4556677778999999999754
No 44
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.60 E-value=9.6e-15 Score=166.92 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=98.1
Q ss_pred eCCEEEEEecceeEeeCCCHHHHHHHhhcc----C-CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHH
Q 036185 864 ENGILYSFDATKCMFSWGNLSEKLRMARLD----C-KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHN 938 (1057)
Q Consensus 864 e~gi~~~~d~~~~~f~~~~~~er~r~~~~~----~-~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N 938 (1057)
+.++.|.+.+.. |+|-|......+++.+ . .+..|||||||+|.||+++| ..+++|+|||+++.|++.|++|
T Consensus 162 ~~~~~~~~~~~s--FfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la--~~~~~V~gvE~~~~av~~A~~N 237 (352)
T PF05958_consen 162 DKGLSFRISPGS--FFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLA--KKAKKVIGVEIVEEAVEDAREN 237 (352)
T ss_dssp CCTEEEEEETTS-----SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHH--CCSSEEEEEES-HHHHHHHHHH
T ss_pred ccceEEEECCCc--CccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHH--hhCCeEEEeeCCHHHHHHHHHH
Confidence 457889998886 4577776666666542 2 23489999999999999998 7788999999999999999999
Q ss_pred HHHcCCCccEEEEeCCccccCC-----------------CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 939 LQANSVSDHCIVLEGDNRFTAP-----------------KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 939 ~~~N~~~~~v~~~~~D~~~~~~-----------------~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
+++|+++ |++|+++++.++.. ...+|.|++|| |-.- .-..+++.+.+..-+++++|+...
T Consensus 238 a~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDP-PR~G-~~~~~~~~~~~~~~ivYvSCnP~t 314 (352)
T PF05958_consen 238 AKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDP-PRAG-LDEKVIELIKKLKRIVYVSCNPAT 314 (352)
T ss_dssp HHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----TT--SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred HHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcC-CCCC-chHHHHHHHhcCCeEEEEECCHHH
Confidence 9999997 79999998876532 12579999999 6541 112223333334556666666432
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEE
Q 036185 1002 SEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVA 1048 (1057)
Q Consensus 1002 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~ 1048 (1057)
. .+.+..+. .|+++ ..+..| +.-|+..|+=.
T Consensus 315 -----l----aRDl~~L~--~~y~~----~~v~~~-DmFP~T~HvE~ 345 (352)
T PF05958_consen 315 -----L----ARDLKILK--EGYKL----EKVQPV-DMFPQTHHVET 345 (352)
T ss_dssp -----H----HHHHHHHH--CCEEE----EEEEEE--SSTTSS--EE
T ss_pred -----H----HHHHHHHh--hcCEE----EEEEEe-ecCCCCCcEEE
Confidence 1 23333332 26542 233333 56788888743
No 45
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.55 E-value=1e-13 Score=159.33 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=122.1
Q ss_pred EEEeeCCceEEEEe-CC--EEEEEecceeEeeCCCHHHHHHHhhc----cC-CCCEEEEecCcccHhHHHHHHhCCCcEE
Q 036185 851 EILVGDNGWVKHCE-NG--ILYSFDATKCMFSWGNLSEKLRMARL----DC-KDEVIVDLFAGIGYFVLPFLVRAKARLV 922 (1057)
Q Consensus 851 ~~l~G~~~~~~~~e-~g--i~~~~d~~~~~f~~~~~~er~r~~~~----~~-~g~~VlDlf~G~G~fsl~~a~~~~a~~V 922 (1057)
.+++|.+.+.+... .| +.|.+.+.. |++-|......+++. +. .+.+|||+|||+|.|+++++ .++++|
T Consensus 156 ~~~~G~~~i~e~l~~~~~~~~~~~~~~s--F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la--~~~~~v 231 (362)
T PRK05031 156 KIVLDQDYVDERLPVAGREFIYRQVENS--FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALA--RNFRRV 231 (362)
T ss_pred EEEcCCCEEEEEEecCCcEEEEEeCCCC--eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHH--hhCCEE
Confidence 56788765544332 46 788887776 456665555555543 22 23579999999999999887 567799
Q ss_pred EEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-----------------CCccEEEECCCCCChhHHHHHHHH
Q 036185 923 YACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-----------------GVANRVCLGLIPTSENSWVTAVQA 985 (1057)
Q Consensus 923 ~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-----------------~~~D~Vil~~~P~~~~~~~~a~~~ 985 (1057)
+|||+++.|++.+++|++.|+++ +++++++|+.++++. .+||+|++|| |. ......++..
T Consensus 232 ~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP-PR-~G~~~~~l~~ 308 (362)
T PRK05031 232 LATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP-PR-AGLDDETLKL 308 (362)
T ss_pred EEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC-CC-CCCcHHHHHH
Confidence 99999999999999999999997 799999999886531 1489999999 75 4445666666
Q ss_pred hhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEE
Q 036185 986 LRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLV 1047 (1057)
Q Consensus 986 l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~ 1047 (1057)
|.++++++++.++... + .+.+..++ + |+. +.+++.| +--|+.+|+=
T Consensus 309 l~~~~~ivyvSC~p~t-----l----arDl~~L~-~-gY~----l~~v~~~-DmFPqT~HvE 354 (362)
T PRK05031 309 VQAYERILYISCNPET-----L----CENLETLS-Q-THK----VERFALF-DQFPYTHHME 354 (362)
T ss_pred HHccCCEEEEEeCHHH-----H----HHHHHHHc-C-CcE----EEEEEEc-ccCCCCCcEE
Confidence 6556788888777521 1 22333343 2 664 3334433 5568888863
No 46
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.54 E-value=2.9e-13 Score=155.51 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=101.8
Q ss_pred ceeEeeCCCHHHHH---HHhhccC---CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCcc
Q 036185 874 TKCMFSWGNLSEKL---RMARLDC---KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDH 947 (1057)
Q Consensus 874 ~~~~f~~~~~~er~---r~~~~~~---~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~ 947 (1057)
.++||++....+|. .+++.+. .+++|||+|||+|.+++.+|+..++.+|+++|+||.|++.+++|+++|+++ +
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~ 108 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-N 108 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-c
Confidence 36899999888886 3334333 346999999999999999986667778999999999999999999999997 5
Q ss_pred EEEEeCCccccCC-CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEE
Q 036185 948 CIVLEGDNRFTAP-KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 948 v~~~~~D~~~~~~-~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
++++++|+..++. ...||+|++||+.+...++..|+..++ +||+|++.
T Consensus 109 ~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~-~~gilyvS 157 (382)
T PRK04338 109 EKVFNKDANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVK-RGGLLCVT 157 (382)
T ss_pred eEEEhhhHHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhc-CCCEEEEE
Confidence 8899999998776 467999999995455677888898887 79999998
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.54 E-value=4.1e-13 Score=145.10 Aligned_cols=241 Identities=19% Similarity=0.263 Sum_probs=175.8
Q ss_pred ceeeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCC--CcccccEEEEeCCCCcEEEeccCCCCCCccc
Q 036185 269 GLSVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGR--HARRNDLFLLDPLQGTIKAIHTEGSPSPRLG 346 (1057)
Q Consensus 269 ~l~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~--~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~ 346 (1057)
.-.|.++. ..+...|-+..++.+++. ||||||.+.... ....+++|+|||.+++|.++.+ ..|....+
T Consensus 69 ~k~W~~~a----~FpG~~rnqa~~a~~~~k-----LyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~sP~gl~G 138 (381)
T COG3055 69 GKGWTKIA----DFPGGARNQAVAAVIGGK-----LYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RSPTGLVG 138 (381)
T ss_pred CCCceEcc----cCCCcccccchheeeCCe-----EEEeeccccCCCCCceEeeeeEEecCCCChhheecc-cccccccc
Confidence 44666654 344557889999999887 999999976544 5678999999999999999974 56777889
Q ss_pred cEEEEECC-EEEEEcccCC---------------------------------CCCCCCcEEEEECCCCcEEEeeccCCCC
Q 036185 347 HTSSLIGD-HMFIIGGRAD---------------------------------PLNILSDVWVFNMAKSKWTLLECSGSVF 392 (1057)
Q Consensus 347 hs~v~~~~-~Iyv~GG~~~---------------------------------~~~~~~~v~~yd~~t~~W~~~~~~g~~p 392 (1057)
++++.+++ .||++||.+. +..+...++.|+|.++.|+.+-. .+.
T Consensus 139 ~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf 216 (381)
T COG3055 139 ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPF 216 (381)
T ss_pred ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--Ccc
Confidence 99999988 9999999742 11345789999999999998841 355
Q ss_pred CcccceEEEEECCEEEEEcccCC-CcccceEEEEECC--CCcEEEeecCCCC----CCCcceeEEEEECCEEEEEecCCC
Q 036185 393 QPRHRHAAAVIGSKIYVFGGLNN-DTIFSSLHVLDTD--TLQWKELLINGEG----PCARHSHSMLAYGSRLYMFGGYNG 465 (1057)
Q Consensus 393 ~~R~~hsa~~~~~~iyv~GG~~~-~~~~~~v~~yD~~--t~~W~~~~~~g~~----P~~r~~~s~~~~~~~lyv~GG~~~ 465 (1057)
.++++++.+.-++++.++-|.-. .-....++.++.. .-+|..+...... +....++-.-..++.+.+.||.+-
T Consensus 217 ~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF 296 (381)
T COG3055 217 YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANF 296 (381)
T ss_pred cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCC
Confidence 67888666666787888877643 3344556677664 5689998653211 122233333355778888888521
Q ss_pred -------------------CcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCC-CCCeEEEE
Q 036185 466 -------------------EKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQ-NYQELSLL 525 (1057)
Q Consensus 466 -------------------~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~-~~~~i~~y 525 (1057)
....++||.|| ++.|+.+ +.+|.++.+..++..++.+|++||-+... ...+++.+
T Consensus 297 ~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 297 PGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred hhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 13467899998 9999997 89999999999999999999999965432 34445544
Q ss_pred E
Q 036185 526 D 526 (1057)
Q Consensus 526 d 526 (1057)
-
T Consensus 372 ~ 372 (381)
T COG3055 372 S 372 (381)
T ss_pred E
Confidence 3
No 48
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.52 E-value=2e-13 Score=155.91 Aligned_cols=133 Identities=20% Similarity=0.120 Sum_probs=109.8
Q ss_pred EeCCEEEEEe-cceeEeeCCCHHHHHHHhh------ccCCC---CEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHH
Q 036185 863 CENGILYSFD-ATKCMFSWGNLSEKLRMAR------LDCKD---EVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCA 931 (1057)
Q Consensus 863 ~e~gi~~~~d-~~~~~f~~~~~~er~r~~~------~~~~g---~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~a 931 (1057)
+|+.+++.+. -..+||+|.+..+|..-+. ...++ -+|||+|||+|.+||.++++. |+++|+++|+||.|
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 3556666663 2468999999999875332 12334 389999999999999999553 78899999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 932 VEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 932 i~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
++.+++|+++|+++ +++++++|+..++. ..+||+|++||+.+..+++..|++.++ +||+|++..
T Consensus 82 v~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 82 VESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred HHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHHHHHHhcc-cCCEEEEEe
Confidence 99999999999997 69999999999876 357999999996555799999999998 799999984
No 49
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.3e-13 Score=149.78 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=152.2
Q ss_pred ChhHHHHHHHHHHHhcCCC------c-hHHhhcCCCc-eEEeCCEEEEccCCCC--CchhhhHHhhHHHHHHhHcC----
Q 036185 765 SPFKAMTEAVASLIEQKGL------S-ARLLEQLPSR-WERLGDIVVLPVTSFK--DPVWDSIGGELWPAVAKILN---- 830 (1057)
Q Consensus 765 ~~~~~~~~~l~~~l~~~~~------~-~~~l~~lp~~-~d~~gdi~vl~~~~~~--~~~~~~~~~~l~~~l~~~~~---- 830 (1057)
.+..++...+..++++..+ + .+..++|..| ..+-|.++++-+.... .+.+.++.+.+.+.+...-+
T Consensus 235 ~~~~~V~s~~Q~f~R~t~l~P~~~~~~~G~wk~LtVRt~~~~~~~~il~i~~~~l~~e~l~e~~~ki~~~f~~~~~~a~~ 314 (534)
T KOG2187|consen 235 EIMSQVASAVQEFYRETKLSPYDDFPKGGFWKQLTVRTEFRGGAMAILTIHPCKLATEELTELKKKIEQRFLSGPGFASG 314 (534)
T ss_pred hHHHHHHHHHHHHHhcCCCccccccCCCCceeeeEEEecccCceEEEEEEEeecccHHHHHHHHHHHHHHHhcccccccc
Confidence 4466777888888876544 2 4578888778 6666777776544221 22233333333332222211
Q ss_pred ccEEEcccccC-CCCccccceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHH----HHhhccCCCCEEEEecCc
Q 036185 831 TSHLARQGRVA-PTGTRDSALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKL----RMARLDCKDEVIVDLFAG 905 (1057)
Q Consensus 831 ~~~i~~~~~i~-~~~~r~~~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~----r~~~~~~~g~~VlDlf~G 905 (1057)
...++...... ...--...+.++.|+....++. +|++|+|.+..||.......|.. +-...+..++.++|+|||
T Consensus 315 l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l-~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CG 393 (534)
T KOG2187|consen 315 LRVLYLQESGHTSDGQEGKPLQLVGGDPYITESL-LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCG 393 (534)
T ss_pred eeEEEEecccccccCCCCCCeEEEccccEEEeec-CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeec
Confidence 22333333211 0111135678888876555554 59999999998544333333332 111234678999999999
Q ss_pred ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CC---Ccc-EEEECCCCCC--h
Q 036185 906 IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KG---VAN-RVCLGLIPTS--E 976 (1057)
Q Consensus 906 ~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~---~~D-~Vil~~~P~~--~ 976 (1057)
+|.|++.+| +++++|++||++|+|++.|++||+.||++ |++|++|-+.+.++ .. .-+ ++|+|| |-. +
T Consensus 394 TG~iglala--~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDP-pR~Glh 469 (534)
T KOG2187|consen 394 TGTIGLALA--RGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDP-PRKGLH 469 (534)
T ss_pred CCceehhhh--ccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEECC-Cccccc
Confidence 999999998 88999999999999999999999999998 79999998887765 11 345 788898 654 4
Q ss_pred hHHHHHHHHhhCCCcEEEEEccccc
Q 036185 977 NSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 977 ~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
..+..+++..+.+--++++.++.+.
T Consensus 470 ~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 470 MKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred HHHHHHHHhccCccceEEEEcCHHH
Confidence 4566777777655677778777763
No 50
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.47 E-value=1e-12 Score=150.43 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=118.1
Q ss_pred ceEEEeeCCceEEEE-eCC--EEEEEecceeEeeCCCHHHHHHHhh----ccC-CCCEEEEecCcccHhHHHHHHhCCCc
Q 036185 849 ALEILVGDNGWVKHC-ENG--ILYSFDATKCMFSWGNLSEKLRMAR----LDC-KDEVIVDLFAGIGYFVLPFLVRAKAR 920 (1057)
Q Consensus 849 ~~~~l~G~~~~~~~~-e~g--i~~~~d~~~~~f~~~~~~er~r~~~----~~~-~g~~VlDlf~G~G~fsl~~a~~~~a~ 920 (1057)
...+++|.....+.. -+| ++|.+++.. |+|-|...-..++. ... .+++|||+|||+|.|+++++ .+++
T Consensus 145 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~--F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la--~~~~ 220 (353)
T TIGR02143 145 KKKIVLDQDYVDETLPVAGREFIYRQVENS--FTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALA--QNFR 220 (353)
T ss_pred CcEEEcCCCEEEEEEecCCeEEEEEECCCC--cccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHH--HhCC
Confidence 345678876443322 146 778887765 45565543333333 222 24579999999999999887 5567
Q ss_pred EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-----------------CCccEEEECCCCCChhHHHHHH
Q 036185 921 LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-----------------GVANRVCLGLIPTSENSWVTAV 983 (1057)
Q Consensus 921 ~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-----------------~~~D~Vil~~~P~~~~~~~~a~ 983 (1057)
+|+|||+++.|++.+++|++.|+++ +++++++|+.+++.. ..+|.|++|| |. .+....++
T Consensus 221 ~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDP-PR-~G~~~~~l 297 (353)
T TIGR02143 221 RVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDP-PR-AGLDPDTC 297 (353)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECC-CC-CCCcHHHH
Confidence 8999999999999999999999997 699999999886641 1379999999 73 44455666
Q ss_pred HHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 984 QALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 984 ~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
..+.++++++++.++... + .+.+..++ .++. +.+++.| +--|+.+|+
T Consensus 298 ~~l~~~~~ivYvsC~p~t-----l----aRDl~~L~--~~Y~----l~~v~~~-DmFP~T~Hv 344 (353)
T TIGR02143 298 KLVQAYERILYISCNPET-----L----KANLEQLS--ETHR----VERFALF-DQFPYTHHM 344 (353)
T ss_pred HHHHcCCcEEEEEcCHHH-----H----HHHHHHHh--cCcE----EEEEEEc-ccCCCCCcE
Confidence 666556788887776532 2 23333333 2343 3334433 456888886
No 51
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.46 E-value=2.6e-14 Score=158.07 Aligned_cols=265 Identities=21% Similarity=0.334 Sum_probs=189.4
Q ss_pred CCCceeeEEEEecC-----CCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccC-C
Q 036185 266 PSCGLSVSRIVIAG-----EPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTE-G 339 (1057)
Q Consensus 266 ~~~~l~w~~l~~~~-----~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~-~ 339 (1057)
+-+...|.++.... ...-|..|.||.++..... +.+|++||+++ ...+.|+|.|+...+.|..+... .
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~---~CiYLYGGWdG---~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQT---ECVYLYGGWDG---TQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCC---cEEEEecCccc---chhHHHHHhhcCCcceeEEeecCCC
Confidence 44677888776654 3445668999999987653 57999999998 35689999999999999998766 4
Q ss_pred CCCCccccEEEEECC--EEEEEcccCCC-----CCCCCcEEEEECCCCcEEEeeccC---CCCCcccceEEEEECCE--E
Q 036185 340 SPSPRLGHTSSLIGD--HMFIIGGRADP-----LNILSDVWVFNMAKSKWTLLECSG---SVFQPRHRHAAAVIGSK--I 407 (1057)
Q Consensus 340 ~P~~R~~hs~v~~~~--~Iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~R~~hsa~~~~~~--i 407 (1057)
.|..|.+|-++..-. ++|+.|-+-+. ...-+|+|+||..++.|..+.... .-|..-+.|.+++.+++ +
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i 388 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI 388 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence 899999999998755 89999987432 234579999999999999986432 25778899999999888 9
Q ss_pred EEEcccCC---CcccceEEEEECCCCcEEEeecCC-------CCCCCcceeEEEEE--CCEEEEEecCCCCcccCcEEEE
Q 036185 408 YVFGGLNN---DTIFSSLHVLDTDTLQWKELLING-------EGPCARHSHSMLAY--GSRLYMFGGYNGEKALGDLYTF 475 (1057)
Q Consensus 408 yv~GG~~~---~~~~~~v~~yD~~t~~W~~~~~~g-------~~P~~r~~~s~~~~--~~~lyv~GG~~~~~~~~~l~~y 475 (1057)
|||||..- ...+..+|.||.....|..+.... .....|.+|+|-+. ++++|+|||.....-++-.+.|
T Consensus 389 yVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y 468 (723)
T KOG2437|consen 389 YVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSY 468 (723)
T ss_pred EEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcc
Confidence 99999753 356788999999999998875321 12346777777654 5679999998776666666777
Q ss_pred ECCCCeEEEeec-----cCCCCCCceee--EEEEECCEEEEEeccCC------CCCCCeEEEEECCCCeEEEee
Q 036185 476 DVHACLWKKEDI-----AARSPHARFSH--TMFLYKNYLGLFGGCPV------RQNYQELSLLDLQLHIWKHLK 536 (1057)
Q Consensus 476 d~~t~~W~~v~~-----~~~~P~~R~~h--s~~~~~~~l~i~GG~~~------~~~~~~i~~yd~~~~~W~~v~ 536 (1057)
|+....-..++. ....|.+-+.- .+-.-.+.|.+.-|... ....+.+|+|+..++.|..+.
T Consensus 469 ~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 469 DIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred eeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 665443222210 11122221111 11111456777767542 124678899999999998764
No 52
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.38 E-value=2.3e-12 Score=134.45 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=84.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CC-CccEEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KG-VANRVC 968 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~-~~D~Vi 968 (1057)
.+|.+|||+|||+|.+++.++ ++||++|++||.++.|++.+++|++.|++.++++++++|+.+++. .. .+|+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~-srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEAL-SRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 468999999999999999998 678889999999999999999999999997789999999977653 12 478888
Q ss_pred ECCCCCChhHHHHHHHHhh-----CCCcEEEEEccc
Q 036185 969 LGLIPTSENSWVTAVQALR-----SEGGTLHVHGNV 999 (1057)
Q Consensus 969 l~~~P~~~~~~~~a~~~l~-----~~gg~l~~~~~~ 999 (1057)
+|| |.........+..+. +++|++++....
T Consensus 127 ~DP-Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 LDP-PFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred ECc-CCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 888 887666656555442 457777765444
No 53
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.37 E-value=2.7e-13 Score=150.23 Aligned_cols=202 Identities=23% Similarity=0.396 Sum_probs=158.3
Q ss_pred CCCcEEEeccC--------CCCCCccccEEEEECC--EEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccc
Q 036185 328 LQGTIKAIHTE--------GSPSPRLGHTSSLIGD--HMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHR 397 (1057)
Q Consensus 328 ~t~~W~~l~~~--------~~P~~R~~hs~v~~~~--~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 397 (1057)
.+-.|.+++.. .-|..|.+|.++...+ .||++||+++ ..-+.|+|.|+...+.|+.+...+..|-.|..
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 35567776543 3588899999999865 8999999988 46788999999999999999887779999999
Q ss_pred eEEEEECC--EEEEEcccCCC------cccceEEEEECCCCcEEEeecCC---CCCCCcceeEEEEECCE--EEEEecCC
Q 036185 398 HAAAVIGS--KIYVFGGLNND------TIFSSLHVLDTDTLQWKELLING---EGPCARHSHSMLAYGSR--LYMFGGYN 464 (1057)
Q Consensus 398 hsa~~~~~--~iyv~GG~~~~------~~~~~v~~yD~~t~~W~~~~~~g---~~P~~r~~~s~~~~~~~--lyv~GG~~ 464 (1057)
|-++..-. ++|+.|-+-+. ..-+|+|.||..++.|..++-.. .-|...+.|.|++.+++ +|+|||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99999855 89999987542 23478999999999999986432 24888999999999988 99999974
Q ss_pred ---CCcccCcEEEEECCCCeEEEeeccC-------CCCCCceeeEEEEE--CCEEEEEeccCCCCCCCeEEEEECCCC
Q 036185 465 ---GEKALGDLYTFDVHACLWKKEDIAA-------RSPHARFSHTMFLY--KNYLGLFGGCPVRQNYQELSLLDLQLH 530 (1057)
Q Consensus 465 ---~~~~~~~l~~yd~~t~~W~~v~~~~-------~~P~~R~~hs~~~~--~~~l~i~GG~~~~~~~~~i~~yd~~~~ 530 (1057)
.......+|.||.....|......- ..-..|.+|+|-.+ ++.+|++||......++-.+.|++...
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E 473 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSE 473 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccc
Confidence 2356778999999999998753211 12235788888766 567999999766665655666665443
No 54
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.37 E-value=2.9e-12 Score=134.13 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~ 971 (1057)
.++.+|||+|||+|.+++.++ ..++.+|+++|++++|++.+++|++.|+++ ++.++++|+.+.++ ...||+|++||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~l-sr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEAL-SRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECC
Confidence 467899999999999999765 356789999999999999999999999986 79999999988764 34699999999
Q ss_pred CCCChhHHHHHHHHhh-----CCCcEEEEEccccc
Q 036185 972 IPTSENSWVTAVQALR-----SEGGTLHVHGNVKD 1001 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~-----~~gg~l~~~~~~~~ 1001 (1057)
|+.......++..|. .+++++++.+....
T Consensus 130 -Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 130 -PFRKGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred -CCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 866666666666663 35788888766543
No 55
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.37 E-value=1.1e-12 Score=135.65 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=82.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCccEEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANRVC 968 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~Vi 968 (1057)
-.|.+|||||||+|.+|+.++ ++||++|++||.|+.|++.+++|++.-++.+++.++++|+...+. ..+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEAL-SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEAL-SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 468999999999999999998 789999999999999999999999999998889999999887763 46899999
Q ss_pred ECCCCCChhHH-HHHHHHhh-----CCCcEEEEEccccc
Q 036185 969 LGLIPTSENSW-VTAVQALR-----SEGGTLHVHGNVKD 1001 (1057)
Q Consensus 969 l~~~P~~~~~~-~~a~~~l~-----~~gg~l~~~~~~~~ 1001 (1057)
+|| |+....+ ...+..|. +++|+|++....++
T Consensus 120 lDP-PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 120 LDP-PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKE 157 (183)
T ss_dssp E---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred ECC-CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 999 9887764 66666653 34787777776653
No 56
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=131.29 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEEC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLG 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~ 970 (1057)
....+|||++||+|..+|.+|.+....+|++||+.++++++|++|+++|+++++++++++|+.++.+ ..+||+|++|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 3478999999999999999995534467999999999999999999999999999999999999876 3358999999
Q ss_pred CCCCC
Q 036185 971 LIPTS 975 (1057)
Q Consensus 971 ~~P~~ 975 (1057)
| |++
T Consensus 123 P-Pyf 126 (248)
T COG4123 123 P-PYF 126 (248)
T ss_pred C-CCC
Confidence 9 865
No 57
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.2e-11 Score=122.12 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
-+|.+|+||+||+|.|++.++ ..||.+|+|||++|+|++.+++|++.+ .++++++.+|+.++ ..++|.||||| |
T Consensus 44 l~g~~V~DlG~GTG~La~ga~-~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~--~~~~dtvimNP-P 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAA-LLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF--RGKFDTVIMNP-P 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHH-hcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc--CCccceEEECC-C
Confidence 468899999999999999887 689999999999999999999999983 34799999999998 45689999999 7
Q ss_pred CC-------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 974 TS-------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 974 ~~-------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
-. ..++..|+++-. .+|+..+... .+-+++.++++|..+
T Consensus 118 FG~~~rhaDr~Fl~~Ale~s~------vVYsiH~a~~--------~~f~~~~~~~~G~~v 163 (198)
T COG2263 118 FGSQRRHADRPFLLKALEISD------VVYSIHKAGS--------RDFVEKFAADLGGTV 163 (198)
T ss_pred CccccccCCHHHHHHHHHhhh------eEEEeecccc--------HHHHHHHHHhcCCeE
Confidence 53 466777776654 4555544331 334556677788654
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.35 E-value=1.2e-11 Score=127.35 Aligned_cols=122 Identities=25% Similarity=0.249 Sum_probs=93.6
Q ss_pred EeeCCCHHHHHHHh-hcc--CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC
Q 036185 877 MFSWGNLSEKLRMA-RLD--CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG 953 (1057)
Q Consensus 877 ~f~~~~~~er~r~~-~~~--~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~ 953 (1057)
.|++.....-.+++ +.+ ..+.+|||++||+|.+++.++++....+|+++|+|+.|++.+++|++.|++++ +++++.
T Consensus 10 vFs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~ 88 (170)
T PF05175_consen 10 VFSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQS 88 (170)
T ss_dssp STTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEES
T ss_pred eeCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccc
Confidence 57766654444333 222 26789999999999999999854444479999999999999999999999986 999999
Q ss_pred CccccCCCCCccEEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 954 DNRFTAPKGVANRVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 954 D~~~~~~~~~~D~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
|..+.++..+||.|++|| |.. ..++..|.+.|+ +||.+++....+.
T Consensus 89 d~~~~~~~~~fD~Iv~NP-P~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 89 DLFEALPDGKFDLIVSNP-PFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHL 144 (170)
T ss_dssp STTTTCCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTS
T ss_pred cccccccccceeEEEEcc-chhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCC
Confidence 999988777899999999 643 234777888888 6998876555544
No 59
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.33 E-value=3e-11 Score=143.10 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=111.7
Q ss_pred eCCEEEEEecceeEeeCCCHHHHH--HHhhc--cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 864 ENGILYSFDATKCMFSWGNLSEKL--RMARL--DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 864 e~gi~~~~d~~~~~f~~~~~~er~--r~~~~--~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
-.|+.|.+.+..|+......++.. .+++. ..++++|||+|||+|.|++.+|. .+++|+|+|+|+.|++.+++|+
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~--~~~~V~gvD~s~~al~~A~~n~ 339 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLAR--QAAEVVGVEGVEAMVERARENA 339 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHH
Confidence 468999999887433222223322 12222 35788999999999999999983 3468999999999999999999
Q ss_pred HHcCCCccEEEEeCCccccCC-----CCCccEEEECCCCCC-hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHH
Q 036185 940 QANSVSDHCIVLEGDNRFTAP-----KGVANRVCLGLIPTS-ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSK 1013 (1057)
Q Consensus 940 ~~N~~~~~v~~~~~D~~~~~~-----~~~~D~Vil~~~P~~-~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~ 1013 (1057)
+.|+++ +++++++|+.+.+. ...||.|++|| |.. ......++..+. +++++++.++... + .+
T Consensus 340 ~~~~~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP-Pr~g~~~~~~~l~~~~-~~~ivyvSCnp~t-----l----aR 407 (443)
T PRK13168 340 RRNGLD-NVTFYHANLEEDFTDQPWALGGFDKVLLDP-PRAGAAEVMQALAKLG-PKRIVYVSCNPAT-----L----AR 407 (443)
T ss_pred HHcCCC-ceEEEEeChHHhhhhhhhhcCCCCEEEECc-CCcChHHHHHHHHhcC-CCeEEEEEeChHH-----h----hc
Confidence 999997 69999999987642 34699999999 765 222334444444 6888888876532 1 22
Q ss_pred HHHHHHHhcCCceeeeeeEEEEeEeecCCceEEE
Q 036185 1014 SIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLV 1047 (1057)
Q Consensus 1014 ~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~ 1047 (1057)
.+..+ .+.|+++ ++++-| +.-|+.+|+=
T Consensus 408 Dl~~L-~~~gY~l----~~i~~~-DmFP~T~HvE 435 (443)
T PRK13168 408 DAGVL-VEAGYRL----KRAGML-DMFPHTGHVE 435 (443)
T ss_pred cHHHH-hhCCcEE----EEEEEe-ccCCCCCcEE
Confidence 22222 2457653 334433 5568888863
No 60
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.33 E-value=7.6e-12 Score=127.00 Aligned_cols=106 Identities=26% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CC--CccEEEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KG--VANRVCL 969 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~--~~D~Vil 969 (1057)
-.|.+|||||||+|.+++.|+ ++||.+|+.||.|..|+..+++|++.-++..++.++..|+..+++ .. .||+|++
T Consensus 42 i~g~~~LDlFAGSGaLGlEAl-SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEAL-SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 568999999999999999998 789999999999999999999999999988899999999997764 22 4999999
Q ss_pred CCCCCChhHH--HHHHHHh-----hCCCcEEEEEccccc
Q 036185 970 GLIPTSENSW--VTAVQAL-----RSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 970 ~~~P~~~~~~--~~a~~~l-----~~~gg~l~~~~~~~~ 1001 (1057)
|| |+....+ ..++..+ .+++|++++..-+..
T Consensus 121 DP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 121 DP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred CC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 99 9886666 4444442 136888887776653
No 61
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.32 E-value=4.7e-12 Score=121.66 Aligned_cols=100 Identities=29% Similarity=0.372 Sum_probs=83.1
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEEECCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVCLGLI 972 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vil~~~ 972 (1057)
|.+|||+|||+|.|++.+++. ++.+++++|+||.+++.+++|+..+++.++++++++|.++.. +..+||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~-~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np- 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR-GAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP- 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH-CTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE---
T ss_pred CCEEEEcCcchHHHHHHHHHH-CCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC-
Confidence 578999999999999999854 467899999999999999999999999889999999998876 467899999999
Q ss_pred CCCh-------------hHHHHHHHHhhCCCcEEEEEcc
Q 036185 973 PTSE-------------NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 973 P~~~-------------~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|... .++..+.++|+ +||.+.+..+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEeC
Confidence 7652 33777888887 6898877653
No 62
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.5e-11 Score=132.36 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=108.1
Q ss_pred CEEEEEecceeEeeCCCHHHHHHHh----hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 866 GILYSFDATKCMFSWGNLSEKLRMA----RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 866 gi~~~~d~~~~~f~~~~~~er~r~~----~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
-+-.++||.-. |-.+........+ ..+.+|++|||++||+|.+||.++ +.||++|+|+|++|.|++.+++|+++
T Consensus 130 ~~~i~lDPGlA-FGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~-kLGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 130 ELNIELDPGLA-FGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred ceEEEEccccc-cCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHH-HcCCceEEEecCCHHHHHHHHHHHHH
Confidence 56667887643 3344332222222 246799999999999999999987 68999999999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCCh-hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHH
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSE-NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIAR 1020 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~-~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1020 (1057)
|++...+..-..+.......+.||+||.|.+-... ...+++.+.++ +||++.+++.-.+. .+.+.++..
T Consensus 208 N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lk-pgg~lIlSGIl~~q---------~~~V~~a~~ 277 (300)
T COG2264 208 NGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLK-PGGRLILSGILEDQ---------AESVAEAYE 277 (300)
T ss_pred cCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcC-CCceEEEEeehHhH---------HHHHHHHHH
Confidence 99984344444444444445689999999855443 33555556666 79999999976542 456677777
Q ss_pred hcCCce
Q 036185 1021 SEGHRW 1026 (1057)
Q Consensus 1021 ~~g~~~ 1026 (1057)
+.|+.+
T Consensus 278 ~~gf~v 283 (300)
T COG2264 278 QAGFEV 283 (300)
T ss_pred hCCCeE
Confidence 778753
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=7.9e-12 Score=137.99 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=101.3
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHH---hhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRM---ARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~---~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
+.+...+||...|=.-...+-+.-+ -....+|++|||++||+|.++|.++ +.||++|+|+|++|.|++.+++|+++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~-klGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAA-KLGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHH-HTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHH-HcCCCeEEEecCCHHHHHHHHHHHHH
Confidence 4567789997644333344444322 2246789999999999999999998 68999999999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCChhHHHHH-HHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHH
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTA-VQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIAR 1020 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~~~~~~a-~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1020 (1057)
|++.+++.+. ...+. ...+||+|+.|.+......+... .+.|+ +||+|.+++.-.+. .+.+.++++
T Consensus 207 N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~-~~G~lIlSGIl~~~---------~~~v~~a~~ 273 (295)
T PF06325_consen 207 NGVEDRIEVS--LSEDL-VEGKFDLVVANILADVLLELAPDIASLLK-PGGYLILSGILEEQ---------EDEVIEAYK 273 (295)
T ss_dssp TT-TTCEEES--CTSCT-CCS-EEEEEEES-HHHHHHHHHHCHHHEE-EEEEEEEEEEEGGG---------HHHHHHHHH
T ss_pred cCCCeeEEEE--Eeccc-ccccCCEEEECCCHHHHHHHHHHHHHhhC-CCCEEEEccccHHH---------HHHHHHHHH
Confidence 9999876553 22222 24689999999954443333333 34455 79999999998765 334555555
Q ss_pred hcCCc
Q 036185 1021 SEGHR 1025 (1057)
Q Consensus 1021 ~~g~~ 1025 (1057)
+ |+.
T Consensus 274 ~-g~~ 277 (295)
T PF06325_consen 274 Q-GFE 277 (295)
T ss_dssp T-TEE
T ss_pred C-CCE
Confidence 5 654
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=8.9e-11 Score=121.98 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=100.9
Q ss_pred hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 891 RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 891 ~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
..+.++.+|||++||+|.+++.+|......+|+++|.++.+++.+++|++.++++ +++++++|+.+......||.|+++
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEc
Confidence 3455689999999999999999885455678999999999999999999999997 499999999886555579999998
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
........+..+.+.|+ +||.+++....+. ...+.++++..|..+
T Consensus 120 ~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~~----------~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 120 AVASLSDLVELCLPLLK-PGGRFLALKGRDP----------EEEIAELPKALGGKV 164 (187)
T ss_pred cccCHHHHHHHHHHhcC-CCeEEEEEeCCCh----------HHHHHHHHHhcCceE
Confidence 75555677888888888 7998888765532 345667777788764
No 65
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.29 E-value=6.6e-11 Score=131.66 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=83.4
Q ss_pred CCEEEEEecceeEeeCCCHHHHHH--Hhh-cc--CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLR--MAR-LD--CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r--~~~-~~--~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
.|+.|.+++.- ++ ++..+|-.. .+. .+ .++.+|||++||+|.+++.++......+|+|+|+|+.|++.+++|+
T Consensus 88 ~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 88 AGLEFYVDERV-LI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred cCcEEEECCCC-cc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 47888888753 33 554443321 111 22 3457999999999999999985544457999999999999999999
Q ss_pred HHcCCCccEEEEeCCccccCCCCCccEEEECCCCC
Q 036185 940 QANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPT 974 (1057)
Q Consensus 940 ~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~ 974 (1057)
+.|++.+++.++++|+.+.++...||.|++|| |+
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NP-Py 199 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALPGRKYDLIVSNP-PY 199 (284)
T ss_pred HHcCCCCcEEEEECchhhccCCCCccEEEECC-CC
Confidence 99999778999999998776655799999999 75
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=5.1e-11 Score=123.55 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=85.0
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPT 974 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~ 974 (1057)
++.+|||++||+|.+++.+|......+|+|+|.++.+++.+++|++.++++ +++++++|+.++.....||.|+++.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRALAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehhhhC
Confidence 488999999999999999875444568999999999999999999999986 6999999999865556899999997555
Q ss_pred ChhHHHHHHHHhhCCCcEEEEEc
Q 036185 975 SENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 975 ~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
....+..+.++|+ +||.+.++.
T Consensus 121 ~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 121 LNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEc
Confidence 5666777778887 688877764
No 67
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.27 E-value=1.1e-10 Score=127.60 Aligned_cols=145 Identities=23% Similarity=0.199 Sum_probs=100.5
Q ss_pred CCEEEEEecceeEeeCCCHHHHHH-H-hhcc---CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLR-M-ARLD---CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r-~-~~~~---~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
.|++|.+++.. |+ ++..+|... . +... ....+|||+|||+|.+++.++...+..+|+|+|+|+.|++.+++|+
T Consensus 53 ~g~~~~v~~~v-f~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 53 CGLRIAVDPGV-FV-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred cCeEEEECCCC-cC-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 47888998864 34 555555432 1 1222 2245899999999999999985555567999999999999999999
Q ss_pred HHcCCCccEEEEeCCccccCC---CCCccEEEECCCCCCh-------------------------------hHHHHHHHH
Q 036185 940 QANSVSDHCIVLEGDNRFTAP---KGVANRVCLGLIPTSE-------------------------------NSWVTAVQA 985 (1057)
Q Consensus 940 ~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~~~P~~~-------------------------------~~~~~a~~~ 985 (1057)
+.|++ +++++|+.+.++ ...||+|++|| |+.. ..+..+.+.
T Consensus 131 ~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP-Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~ 205 (251)
T TIGR03704 131 ADAGG----TVHEGDLYDALPTALRGRVDILAANA-PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW 205 (251)
T ss_pred HHcCC----EEEEeechhhcchhcCCCEeEEEECC-CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 99873 679999887654 24699999999 6531 223344556
Q ss_pred hhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCcee
Q 036185 986 LRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWE 1027 (1057)
Q Consensus 986 l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 1027 (1057)
|+ +||++.+..... . ...+.+.+++.|+..+
T Consensus 206 L~-~gG~l~l~~~~~-~---------~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 206 LA-PGGHLLVETSER-Q---------APLAVEAFARAGLIAR 236 (251)
T ss_pred cC-CCCEEEEEECcc-h---------HHHHHHHHHHCCCCce
Confidence 66 688877653321 1 2345566677776544
No 68
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.25 E-value=4.4e-11 Score=113.89 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=82.0
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCc-cccCCCCCccEEEECC--
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDN-RFTAPKGVANRVCLGL-- 971 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~-~~~~~~~~~D~Vil~~-- 971 (1057)
+|.+|||++||+|.+++.+++.....+|+|+|++|++++.+++|+..++..+++.++++|+ ........||.|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999953355679999999999999999998888888999999999 3333355799999977
Q ss_pred ---CCCC---hhHHHHHHHHhhCCCcEEEEEcc
Q 036185 972 ---IPTS---ENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 972 ---~P~~---~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
++.. ...+....+.|+ +||++.+.++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLK-PGGRLVINTC 112 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcC-CCcEEEEEEC
Confidence 2222 233666667777 6999988754
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.23 E-value=5.8e-10 Score=127.36 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=118.3
Q ss_pred ceEEEeeCCceEEEEeCCEEEEEecceeEeeCCCHHHHHHH--hhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEe
Q 036185 849 ALEILVGDNGWVKHCENGILYSFDATKCMFSWGNLSEKLRM--ARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACE 926 (1057)
Q Consensus 849 ~~~~l~G~~~~~~~~e~gi~~~~d~~~~~f~~~~~~er~r~--~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD 926 (1057)
.+..|.|... -.|..|.+++.. |.++..+|.... +..+.++.+|||++||+|.+++.+++.....+|+|+|
T Consensus 210 PlqYIlG~~~-----F~G~~f~V~p~v--LIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 210 PVAYILGVRE-----FYGRRFAVNPNV--LIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CceeEeeeee-----ecCcEEEeCCCc--cCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 3455555422 248888888774 347766665432 2334567799999999999999988555566899999
Q ss_pred cCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-C-CCCccEEEECCCCCCh----------------------------
Q 036185 927 WNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-P-KGVANRVCLGLIPTSE---------------------------- 976 (1057)
Q Consensus 927 ~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~-~~~~D~Vil~~~P~~~---------------------------- 976 (1057)
+|+.|++.+++|++.|+. +++++++|.++.. + ..+||.|++|| |+..
T Consensus 283 iS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP-PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 283 ISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP-PYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred CCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC-CCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 999999999999999986 6999999987642 2 34799999999 7521
Q ss_pred --hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEE
Q 036185 977 --NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVA 1048 (1057)
Q Consensus 977 --~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~ 1048 (1057)
..+..+.+.|+ +||++.+..-. .. .+.+.+++++.|+. .++..++++=....++.
T Consensus 360 yr~Ii~~a~~~Lk-pgG~lilEiG~-~Q---------~e~V~~ll~~~Gf~------~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 360 IRTLAQGAPDRLA-EGGFLLLEHGF-DQ---------GAAVRGVLAENGFS------GVETLPDLAGLDRVTLG 416 (423)
T ss_pred HHHHHHHHHHhcC-CCcEEEEEECc-cH---------HHHHHHHHHHCCCc------EEEEEEcCCCCcEEEEE
Confidence 11233334555 68887653322 11 23455666667754 14557888877665553
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=128.80 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHH--hh-ccC-CC-CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRM--AR-LDC-KD-EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~--~~-~~~-~g-~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
.|..|.+++.- ++ ++..++..-. +. ... .+ .+|||++||+|.+++.++......+|+|+|+|+.|++.+++|+
T Consensus 100 ~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 100 CGLEFYVDERV-LV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred cCcEEEECCCC-cC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 47889998753 44 6655544221 11 222 22 6899999999999999985544568999999999999999999
Q ss_pred HHcCCCccEEEEeCCccccCCCCCccEEEECCCCC
Q 036185 940 QANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPT 974 (1057)
Q Consensus 940 ~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~ 974 (1057)
+.|++.++++++++|+.+.++...||.|++|| |+
T Consensus 178 ~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP-Py 211 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFAALPGRRYDLIVSNP-PY 211 (307)
T ss_pred HHhCCCCcEEEEECchhhhCCCCCccEEEECC-CC
Confidence 99999778999999998776655799999998 65
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=1.7e-10 Score=121.87 Aligned_cols=124 Identities=14% Similarity=0.197 Sum_probs=96.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil 969 (1057)
+.++++|||++||+|.+++.+|+..+ ..+|+++|+++.+++.+++|++.+++.+++.++++|+.+.++ ...||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 46789999999999999999885443 458999999999999999999999976689999999987654 357999999
Q ss_pred CCC-CCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 970 GLI-PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 970 ~~~-P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
+.. +.....+..+.+.|+ +||.++++....+ ..+.+.+.+++.|+..
T Consensus 118 ~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~---------~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIK-KGGRIVIDAILLE---------TVNNALSALENIGFNL 165 (198)
T ss_pred CCCcccHHHHHHHHHHHcC-CCcEEEEEeecHH---------HHHHHHHHHHHcCCCe
Confidence 651 233566778888887 7999987655322 1345556667788754
No 72
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.2e-10 Score=124.54 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHHh--hccCCCC-EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRMA--RLDCKDE-VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~~--~~~~~g~-~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
.|++|.++..- + -|+.-+|..-.. ....... +|||++||+|.+++.+|+......|+|+|+||+|++.|++|++.
T Consensus 79 ~gl~~~v~~~v-l-iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGV-L-IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCc-e-ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 47888887653 3 466666643322 2222223 79999999999999998554445899999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCChh------------------------------HHHHHHHHhhCCCc
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSEN------------------------------SWVTAVQALRSEGG 991 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~~------------------------------~~~~a~~~l~~~gg 991 (1057)
|++ .++.++++|.++-+++ +||+||.|| |+-.. .+..+...|+ +||
T Consensus 157 ~~l-~~~~~~~~dlf~~~~~-~fDlIVsNP-PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g 232 (280)
T COG2890 157 NGL-VRVLVVQSDLFEPLRG-KFDLIVSNP-PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGG 232 (280)
T ss_pred cCC-ccEEEEeeecccccCC-ceeEEEeCC-CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCc
Confidence 999 5788888898887765 899999999 75311 0344555555 588
Q ss_pred EEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEEE
Q 036185 992 TLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVAD 1049 (1057)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~d 1049 (1057)
++.+..-... .+.+.++..+.|. +. .++..|.++-...-+...
T Consensus 233 ~l~le~g~~q----------~~~v~~~~~~~~~-~~----~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 233 VLILEIGLTQ----------GEAVKALFEDTGF-FE----IVETLKDLFGRDRVVLAK 275 (280)
T ss_pred EEEEEECCCc----------HHHHHHHHHhcCC-ce----EEEEEecCCCceEEEEEE
Confidence 8777655433 2345566667774 21 145577777665555543
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=99.21 E-value=3.2e-10 Score=122.06 Aligned_cols=101 Identities=22% Similarity=0.134 Sum_probs=83.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
+.++++|||++||+|.+++.+++ .++.+|+++|+|+.+++.+++|++.+++ ++.++++|..+.++...||.|++||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~-~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~np- 109 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAA-AGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNP- 109 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECC-
Confidence 46788999999999999999883 4666899999999999999999999987 4889999998876666899999998
Q ss_pred CCCh--------------------------hHHHHHHHHhhCCCcEEEEEcc
Q 036185 973 PTSE--------------------------NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 973 P~~~--------------------------~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|+.. ..+..+.+.|+ +||.++++..
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~ 160 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQS 160 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEe
Confidence 6431 13556777887 6898887543
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.21 E-value=5.5e-10 Score=116.00 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=90.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
.++++|||++||+|.+++.++ ..+. +|+++|++|.+++.+++|++.|++ +++++++|+.+... ..||.|++|| |
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~-~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~-p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLK-GKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNP-P 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHH-hcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECC-C
Confidence 456799999999999999998 3444 899999999999999999999987 48999999987654 4799999998 6
Q ss_pred CC--------------------------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 974 TS--------------------------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 974 ~~--------------------------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
.. ..++..+.+.|+ +||.+.+....... ...+.+.+++.|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~~---------~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLNG---------EPDTFDKLDERGFRY 160 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccCC---------hHHHHHHHHhCCCeE
Confidence 42 223666677787 68988887765542 123445556678753
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=5.9e-11 Score=128.61 Aligned_cols=130 Identities=21% Similarity=0.211 Sum_probs=99.9
Q ss_pred CEEEEEecceeEeeCCCHHHHHHHhh--c-cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc
Q 036185 866 GILYSFDATKCMFSWGNLSEKLRMAR--L-DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN 942 (1057)
Q Consensus 866 gi~~~~d~~~~~f~~~~~~er~r~~~--~-~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N 942 (1057)
+++|.=++. .||.+...--.+++. + ...+.+|+|++||.|++++.+|+.....+|+.+|+|..|++.+++|++.|
T Consensus 128 ~~~~~t~pG--VFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 128 ELTFKTLPG--VFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred ceEEEeCCC--CCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 344444444 566655444444433 2 23345999999999999999997666678999999999999999999999
Q ss_pred CCCccEEEEeCCccccCCCCCccEEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 943 SVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 943 ~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
++++ .+++..|..+-... +||.||+|| |-. ...+..|.+.|+ +||-|.+--+.+-
T Consensus 206 ~~~~-~~v~~s~~~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l 270 (300)
T COG2813 206 GVEN-TEVWASNLYEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHL 270 (300)
T ss_pred CCCc-cEEEEecccccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCC
Confidence 9984 48899999887765 899999999 643 255888888998 7998888888553
No 76
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.9e-10 Score=124.01 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=104.7
Q ss_pred eeEeeCCCHHHHHHHhhcc--CC---CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEE
Q 036185 875 KCMFSWGNLSEKLRMARLD--CK---DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCI 949 (1057)
Q Consensus 875 ~~~f~~~~~~er~r~~~~~--~~---g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~ 949 (1057)
.+||+|.+..+|.-.+..+ .. ..+|+|.+||+|.-+|.+|+..+..+|++.|+||.|++.+++|+++|... +..
T Consensus 27 pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~ 105 (380)
T COG1867 27 PVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAE 105 (380)
T ss_pred cceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cce
Confidence 4899999999886544322 22 67999999999999999998777768999999999999999999999655 467
Q ss_pred EEeCCccccCCC--CCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 950 VLEGDNRFTAPK--GVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 950 ~~~~D~~~~~~~--~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+++.|+..++.. ..||+|-+||+.++.+++..|++.++ .+|+|.+-..
T Consensus 106 v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~-~~G~l~vTAT 155 (380)
T COG1867 106 VINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVR-RGGLLCVTAT 155 (380)
T ss_pred eecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhh-cCCEEEEEec
Confidence 788999988864 68999999999999999999999998 6999887654
No 77
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=6.5e-10 Score=112.30 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=97.9
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCC-CccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKG-VANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~-~~D~Vil~~ 971 (1057)
..+|++++|++||+|.+++.+|......+|||+|-+++|++.+++|++..+++ |++++.||+.+.+++. .+|.|+++-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCCCCCEEEECC
Confidence 57899999999999999999994445678999999999999999999999976 8999999999999854 699999998
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
--.-...+..+...|+ +||.|+.--..-+. ...+.+..++.|+.
T Consensus 111 g~~i~~ile~~~~~l~-~ggrlV~naitlE~---------~~~a~~~~~~~g~~ 154 (187)
T COG2242 111 GGNIEEILEAAWERLK-PGGRLVANAITLET---------LAKALEALEQLGGR 154 (187)
T ss_pred CCCHHHHHHHHHHHcC-cCCeEEEEeecHHH---------HHHHHHHHHHcCCc
Confidence 4333444666666676 79998887665433 33445566777774
No 78
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=4.4e-10 Score=123.98 Aligned_cols=108 Identities=21% Similarity=0.176 Sum_probs=88.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
..+|++|||+|||.|++++.+|...+ ...|+|+|+++.+++.+++|++.+++. +++++++|+..+.. ...||+|++|
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence 46899999999999999999885443 347999999999999999999999997 69999999887543 3469999999
Q ss_pred CCCCCh---------------------------hHHHHHHHHhhCCCcEEEEEcccccch
Q 036185 971 LIPTSE---------------------------NSWVTAVQALRSEGGTLHVHGNVKDSE 1003 (1057)
Q Consensus 971 ~~P~~~---------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~ 1003 (1057)
+ |-+. +.+..|+++|+ +||+|+|++|+-..+
T Consensus 148 ~-Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs~~~~ 205 (264)
T TIGR00446 148 A-PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCSLEPE 205 (264)
T ss_pred C-CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCChH
Confidence 9 5331 23666777777 799999999986553
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.17 E-value=1e-09 Score=114.90 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=93.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
+.++.+|||++||+|.+++.+++.....+|+++|+|+.+++.+++|++.+++. +++++++|+...+ ...||.|+++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~-~~~~D~v~~~~~ 106 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL-PGKADAIFIGGS 106 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc-CcCCCEEEECCC
Confidence 35788999999999999999985544568999999999999999999999986 6999999986544 346999999763
Q ss_pred C-CChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 973 P-TSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 973 P-~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
. .....+..+.+.|+ +||++.++...... .+.+.++.++.|+.
T Consensus 107 ~~~~~~~l~~~~~~Lk-~gG~lv~~~~~~~~---------~~~~~~~l~~~g~~ 150 (187)
T PRK08287 107 GGNLTAIIDWSLAHLH-PGGRLVLTFILLEN---------LHSALAHLEKCGVS 150 (187)
T ss_pred ccCHHHHHHHHHHhcC-CCeEEEEEEecHhh---------HHHHHHHHHHCCCC
Confidence 2 23456777888887 79998886543222 23444566777764
No 80
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=1.2e-09 Score=121.88 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=84.0
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHHh--hcc--CC-CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRMA--RLD--CK-DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~~--~~~--~~-g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
.|..|.+++.- |-|+..+|..... ... .. +.+|||+|||+|.+++.++......+|+|+|+++.|++.+++|+
T Consensus 81 ~g~~f~v~~~v--liPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHV--LIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCC--cCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 37788888763 3477666654322 111 22 26899999999999999985444457999999999999999999
Q ss_pred HHcCCCccEEEEeCCccccCCCCCccEEEECCCCCC
Q 036185 940 QANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 940 ~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
+.|++.+++.++++|..+.++...||+|+.|| |+.
T Consensus 159 ~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNP-Pyi 193 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNP-PYI 193 (284)
T ss_pred HHcCCCCcEEEEECchhccCcCCCccEEEECC-CCC
Confidence 99999767999999998876555799999998 653
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.15 E-value=8.6e-10 Score=132.05 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=100.9
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
+.+|||++||+|.+++.+|+.....+|+|+|+|+.|++.+++|++.|++.+++.++++|..+.++...||+|+.|| |+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNP-PYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNP-PYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECC-CCC
Confidence 4689999999999999988554556899999999999999999999999878999999988766556799999999 643
Q ss_pred hh-------------------------------HHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC
Q 036185 976 EN-------------------------------SWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 976 ~~-------------------------------~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 1024 (1057)
.. .+..+.+.|+ +||++.+. ..... .+.+.+++.+.|+
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lE-ig~~q---------~~~v~~~~~~~g~ 286 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILE-IGFKQ---------EEAVTQIFLDHGY 286 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEE-ECCch---------HHHHHHHHHhcCC
Confidence 10 1234445566 78988763 22211 2345555566675
Q ss_pred ceeeeeeEEEEeEeecCCceEEEEEE
Q 036185 1025 RWEVTIEHIERVKWYAPHIRHLVADV 1050 (1057)
Q Consensus 1025 ~~~~~~~~~~~Vk~~aP~~~h~~~d~ 1050 (1057)
.. ++..++++=....+++|-
T Consensus 287 ~~------~~~~~D~~g~~R~v~~~~ 306 (506)
T PRK01544 287 NI------ESVYKDLQGHSRVILISP 306 (506)
T ss_pred Cc------eEEEecCCCCceEEEecc
Confidence 42 344788887777776653
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.11 E-value=2.4e-09 Score=117.41 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=101.1
Q ss_pred CEEEEEecceeEeeCCCHHHHH--HHhhcc-CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc
Q 036185 866 GILYSFDATKCMFSWGNLSEKL--RMARLD-CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN 942 (1057)
Q Consensus 866 gi~~~~d~~~~~f~~~~~~er~--r~~~~~-~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N 942 (1057)
|.+|.++... |.++..++.. .++..+ ..+.+|||++||+|.+++.++.......|+++|+++.+++.+++|++.+
T Consensus 57 ~~~~~~~~~~--~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 134 (251)
T TIGR03534 57 GLDFKVSPGV--LIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL 134 (251)
T ss_pred ceEEEECCCc--ccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 4555555442 3344433322 223333 3456899999999999999985444558999999999999999999999
Q ss_pred CCCccEEEEeCCccccCCCCCccEEEECCCCCCh-------------------------------hHHHHHHHHhhCCCc
Q 036185 943 SVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSE-------------------------------NSWVTAVQALRSEGG 991 (1057)
Q Consensus 943 ~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~-------------------------------~~~~~a~~~l~~~gg 991 (1057)
++. ++.++++|+.+..+..+||.|++|| |... ..+..+.+.|+ +||
T Consensus 135 ~~~-~~~~~~~d~~~~~~~~~fD~Vi~np-Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG 211 (251)
T TIGR03534 135 GLD-NVTFLQSDWFEPLPGGKFDLIVSNP-PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGG 211 (251)
T ss_pred CCC-eEEEEECchhccCcCCceeEEEECC-CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCC
Confidence 997 7999999998866667899999998 6431 22455666776 688
Q ss_pred EEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 992 TLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
++.+..-.. . .+.+.+++++.|+.
T Consensus 212 ~~~~~~~~~-~---------~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 212 WLLLEIGYD-Q---------GEAVRALFEAAGFA 235 (251)
T ss_pred EEEEEECcc-H---------HHHHHHHHHhCCCC
Confidence 887743211 0 23455666677764
No 83
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.11 E-value=1.8e-09 Score=123.52 Aligned_cols=123 Identities=23% Similarity=0.180 Sum_probs=94.0
Q ss_pred EeeCCCHHHHHHHh-hccC--CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCC--ccEEEE
Q 036185 877 MFSWGNLSEKLRMA-RLDC--KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVS--DHCIVL 951 (1057)
Q Consensus 877 ~f~~~~~~er~r~~-~~~~--~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~--~~v~~~ 951 (1057)
-|+......-.|++ +.+. .+.+|||++||+|.+++.++++....+|+++|+|+.|++.+++|++.|+.. .+++++
T Consensus 207 VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 207 VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE
Confidence 46666444333333 3332 246899999999999999985544568999999999999999999999864 378999
Q ss_pred eCCccccCCCCCccEEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 952 EGDNRFTAPKGVANRVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 952 ~~D~~~~~~~~~~D~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.+|+...++..+||.|++|| |.. ...+..+.+.|+ +||.|++..+.+.
T Consensus 287 ~~D~l~~~~~~~fDlIlsNP-Pfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l 344 (378)
T PRK15001 287 INNALSGVEPFRFNAVLCNP-PFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHL 344 (378)
T ss_pred EccccccCCCCCEEEEEECc-CcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEecCc
Confidence 99998766556799999999 743 234677788888 7999988877664
No 84
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=99.10 E-value=7.9e-10 Score=126.66 Aligned_cols=171 Identities=18% Similarity=0.088 Sum_probs=118.6
Q ss_pred ceeEeeCCCHHHHHHHhhcc----------CCCCEEEEecCcccHhHHHHHHh-CCCcEEEEEecCHHHHHHHHHHHHHc
Q 036185 874 TKCMFSWGNLSEKLRMARLD----------CKDEVIVDLFAGIGYFVLPFLVR-AKARLVYACEWNPCAVEALKHNLQAN 942 (1057)
Q Consensus 874 ~~~~f~~~~~~er~r~~~~~----------~~g~~VlDlf~G~G~fsl~~a~~-~~a~~V~avD~n~~ai~~~~~N~~~N 942 (1057)
..+||+|.+..+|..-+..+ .+.-+|||.+||+|.-||.+++. .++.+|++.|+||+|++.+++|+++|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 46899999999997544331 12348999999999999999987 67889999999999999999999999
Q ss_pred CCCc-cEEEEeCCccccC--CCCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc------cc-----------
Q 036185 943 SVSD-HCIVLEGDNRFTA--PKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK------DS----------- 1002 (1057)
Q Consensus 943 ~~~~-~v~~~~~D~~~~~--~~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~------~~----------- 1002 (1057)
++++ ++++.+.|+..++ ....||+|-+||+.++.+++..|++.++ .||+|.+-..-- ..
T Consensus 98 ~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~pfldsA~~~v~-~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~ 176 (377)
T PF02005_consen 98 GLEDERIEVSNMDANVLLYSRQERFDVIDLDPFGSPAPFLDSALQAVK-DGGLLCVTATDTAVLCGSYPEKCFRKYGAVP 176 (377)
T ss_dssp T-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS--HHHHHHHHHHEE-EEEEEEEEE--HHHHTTSSHHHHHHHHSSB-
T ss_pred cccCceEEEehhhHHHHhhhccccCCEEEeCCCCCccHhHHHHHHHhh-cCCEEEEeccccccccCCChhHHHHhcCCcc
Confidence 9997 7999999999988 5778999999999999999999999998 699888876521 00
Q ss_pred -----hhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEEEEEEe
Q 036185 1003 -----EEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 1053 (1057)
Q Consensus 1003 -----~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~d~~~~ 1053 (1057)
--+.-..-++..|.+.|.+.++. ++.+-+|+.+.| +.+=|++.
T Consensus 177 ~~~~~~~E~glRill~~i~r~Aa~~~~~-------i~PllS~~~~hy-~Rv~v~v~ 224 (377)
T PF02005_consen 177 RKTPYCHEMGLRILLGAIAREAARYDRG-------IEPLLSFSIDHY-VRVFVRVK 224 (377)
T ss_dssp --STTHHHHHHHHHHHHHHHHHHTTTEE-------EEEEEEEEETTE-EEEEEEEE
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHhCCC-------eEEEEEeEeCcE-EEEEEEEe
Confidence 00111122345677777777765 455667777664 33334443
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.10 E-value=2.3e-09 Score=117.48 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=102.0
Q ss_pred CEEEEEecceeEeeCCCHHHHHHHh----hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 866 GILYSFDATKCMFSWGNLSEKLRMA----RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 866 gi~~~~d~~~~~f~~~~~~er~r~~----~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
.+...+|+.-. |..+.......++ ....++.+|||++||+|.+++.++ +.++.+|+|+|++|.+++.+++|++.
T Consensus 87 ~~~i~i~p~~a-fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~-~~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 87 EINIELDPGMA-FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAA-KLGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred eEEEEECCCCc-cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 44567777643 3333332222222 235689999999999999999876 56777899999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCC-hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHH
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS-ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIAR 1020 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~-~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1020 (1057)
|++.+++.+..+|. .||+|+.|..... ...+..+.+.|+ +||++++.+...+. .+.+.+.++
T Consensus 165 ~~~~~~~~~~~~~~-------~fD~Vvani~~~~~~~l~~~~~~~Lk-pgG~lilsgi~~~~---------~~~v~~~l~ 227 (250)
T PRK00517 165 NGVELNVYLPQGDL-------KADVIVANILANPLLELAPDLARLLK-PGGRLILSGILEEQ---------ADEVLEAYE 227 (250)
T ss_pred cCCCceEEEccCCC-------CcCEEEEcCcHHHHHHHHHHHHHhcC-CCcEEEEEECcHhh---------HHHHHHHHH
Confidence 99965676666553 5899999974432 344667777787 79999998776532 345566777
Q ss_pred hcCCce
Q 036185 1021 SEGHRW 1026 (1057)
Q Consensus 1021 ~~g~~~ 1026 (1057)
+.|+.+
T Consensus 228 ~~Gf~~ 233 (250)
T PRK00517 228 EAGFTL 233 (250)
T ss_pred HCCCEE
Confidence 788753
No 86
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.07 E-value=2.6e-09 Score=119.35 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=99.3
Q ss_pred eCCEEEEEecceeEeeCCCHHHHHH--Hh-hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHH
Q 036185 864 ENGILYSFDATKCMFSWGNLSEKLR--MA-RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQ 940 (1057)
Q Consensus 864 e~gi~~~~d~~~~~f~~~~~~er~r--~~-~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~ 940 (1057)
++.+...+||...|-.-...+.+.. ++ ....++++|||++||+|.+++.++ +.++.+|+|+|++|.|++.+++|++
T Consensus 125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHH
Confidence 3456678888754322222233221 11 235678999999999999999887 5678899999999999999999999
Q ss_pred HcCCCccEEEEeCCccccCCCCCccEEEECCCCCC-hhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 941 ANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS-ENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 941 ~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~-~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.|++.+++.++.+|..... ...||+|++|.+... ...+..+.+.|+ +||++++.++...
T Consensus 204 ~n~~~~~~~~~~~~~~~~~-~~~fDlVvan~~~~~l~~ll~~~~~~Lk-pgG~li~sgi~~~ 263 (288)
T TIGR00406 204 LNQVSDRLQVKLIYLEQPI-EGKADVIVANILAEVIKELYPQFSRLVK-PGGWLILSGILET 263 (288)
T ss_pred HcCCCcceEEEeccccccc-CCCceEEEEecCHHHHHHHHHHHHHHcC-CCcEEEEEeCcHh
Confidence 9999877888887744332 457999999985433 244666667777 7999999887643
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.07 E-value=2.7e-09 Score=112.53 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=84.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~ 970 (1057)
..++++|||++||+|++++.++......+|+++|+||.+++.+++|++.+++. +++++++|+.+.+. ...+|.|+++
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEE
Confidence 35788999999999999999885444568999999999999999999999986 69999999976433 2346888887
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
..-.....+..+.+.|+ +||.+.++...
T Consensus 117 ~~~~~~~~l~~~~~~Lk-pgG~li~~~~~ 144 (196)
T PRK07402 117 GGRPIKEILQAVWQYLK-PGGRLVATASS 144 (196)
T ss_pred CCcCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence 52222566777788887 79998888764
No 88
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=4.2e-09 Score=125.01 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil 969 (1057)
..+|++|||+|||+|.+++.+|... +..+|+|+|+++.+++.+++|++.+++. +++++++|+.+... ...||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEE
Confidence 4678999999999999999998554 3458999999999999999999999997 59999999987642 257999999
Q ss_pred CCCCCC---------------------------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 970 GLIPTS---------------------------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 970 ~~~P~~---------------------------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|+ |.+ ...+..|.+.|+ +||.|.+.+|+-..
T Consensus 327 D~-Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~~~ 384 (444)
T PRK14902 327 DA-PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCTIEK 384 (444)
T ss_pred cC-CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCCCCh
Confidence 98 632 123666777787 79999998887644
No 89
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.03 E-value=1.8e-09 Score=108.92 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=86.2
Q ss_pred CCCCEEEEecCcccHhHHHHHHh-CCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC--CCccEEEEC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVR-AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK--GVANRVCLG 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~-~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~--~~~D~Vil~ 970 (1057)
.++.+|||++||+|.+++.++.. ....+|+++|+|+.+++.++++++.++++ +++++++|+.++... ..||+|+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 45789999999999999999832 33567999999999999999999999998 899999999994312 589999998
Q ss_pred CCC----CChhHHHHHHHHhhCCCcEEEEEcccccch
Q 036185 971 LIP----TSENSWVTAVQALRSEGGTLHVHGNVKDSE 1003 (1057)
Q Consensus 971 ~~P----~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~ 1003 (1057)
.+. .....+..+.++|+ ++|++++..+.+..+
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLK-PGGILIISDPNHNDE 116 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEEHSHH
T ss_pred CchhhccCHHHHHHHHHHHcC-CCcEEEEEECChHHH
Confidence 632 22345777777887 699988888875443
No 90
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=4.7e-09 Score=124.49 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=90.1
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
..+|++|||+|||+|++++.++... +..+|+|+|+++.+++.+++|++.+|+. +++++++|+..+.+...||.|++|+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcC
Confidence 4578999999999999999887543 2458999999999999999999999996 7999999999876666799999998
Q ss_pred CCCC-h--------------------------hHHHHHHHHhhCCCcEEEEEcccccchh
Q 036185 972 IPTS-E--------------------------NSWVTAVQALRSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 972 ~P~~-~--------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~ 1004 (1057)
|-+ . ..+..+.+.|+ +||+|++.+|+-..++
T Consensus 327 -Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs~~~~E 384 (445)
T PRK14904 327 -PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCSIEPEE 384 (445)
T ss_pred -CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCChhh
Confidence 532 1 23666667777 7999999999986543
No 91
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.01 E-value=1.7e-08 Score=109.37 Aligned_cols=116 Identities=8% Similarity=0.110 Sum_probs=89.9
Q ss_pred CHHHHHHHhhc--cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc
Q 036185 882 NLSEKLRMARL--DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT 958 (1057)
Q Consensus 882 ~~~er~r~~~~--~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~ 958 (1057)
....|..++.. +.++++|||++||+|.++..++...+ ..+|+++|+++.+++.+++|++.++++ +++++++|+.+.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcC
Confidence 33344445544 35788999999999999998885433 358999999999999999999988885 799999999876
Q ss_pred C-CCCCccEEEECCC----CCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 959 A-PKGVANRVCLGLI----PTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 959 ~-~~~~~D~Vil~~~----P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
. +...||.|+++.. |.....+.++.++|+ +||++.+.+..
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~ 153 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETS 153 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECC
Confidence 4 3567999998642 333566777888887 79988877654
No 92
>PRK04266 fibrillarin; Provisional
Probab=99.01 E-value=1.1e-08 Score=109.60 Aligned_cols=122 Identities=19% Similarity=0.156 Sum_probs=88.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---C-CCCccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---P-KGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~-~~~~D~Vi 968 (1057)
+.+|++|||++||+|.+++.++...+...|+|+|+++++++.+.++++.. .++.++.+|+.... . ...+|+|+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEE
Confidence 46899999999999999999985544457999999999999999888753 36899999987521 1 24599999
Q ss_pred ECCCCCCh---hHHHHHHHHhhCCCcEEEE------EcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 969 LGLIPTSE---NSWVTAVQALRSEGGTLHV------HGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 969 l~~~P~~~---~~~~~a~~~l~~~gg~l~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
.+. +... ..+..+.+.|+ +||.+.+ +++..+. .+..+...+.+++.|++
T Consensus 147 ~d~-~~p~~~~~~L~~~~r~LK-pGG~lvI~v~~~~~d~~~~~------~~~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 147 QDV-AQPNQAEIAIDNAEFFLK-DGGYLLLAIKARSIDVTKDP------KEIFKEEIRKLEEGGFE 204 (226)
T ss_pred ECC-CChhHHHHHHHHHHHhcC-CCcEEEEEEecccccCcCCH------HHHHHHHHHHHHHcCCe
Confidence 886 4332 23667778888 7998887 4444332 12233444777778875
No 93
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=5.8e-09 Score=123.34 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=94.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCccE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~ 966 (1057)
..+|++|||+|||+|+++++++...+ ..+|+|+|+++..++.+++|++.+|+. +++++++|+.+... ...||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence 46789999999999999999985533 358999999999999999999999997 69999999987641 357999
Q ss_pred EEECCCCCC---------------------------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHH
Q 036185 967 VCLGLIPTS---------------------------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIA 1019 (1057)
Q Consensus 967 Vil~~~P~~---------------------------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 1019 (1057)
|++|+ |-+ ...+..|.+.|+ +||.|.|.+|+-..++ -.+.+...+
T Consensus 329 Vl~Da-PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcsi~~~E------ne~~v~~~l 400 (434)
T PRK14901 329 ILLDA-PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCTLHPAE------NEAQIEQFL 400 (434)
T ss_pred EEEeC-CCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCChhh------HHHHHHHHH
Confidence 99998 632 123666777777 7999999988764422 234455555
Q ss_pred Hhc
Q 036185 1020 RSE 1022 (1057)
Q Consensus 1020 ~~~ 1022 (1057)
+++
T Consensus 401 ~~~ 403 (434)
T PRK14901 401 ARH 403 (434)
T ss_pred HhC
Confidence 554
No 94
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.00 E-value=5.8e-10 Score=111.82 Aligned_cols=75 Identities=25% Similarity=0.282 Sum_probs=59.1
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCC----ccEEEECCC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGV----ANRVCLGLI 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~----~D~Vil~~~ 972 (1057)
++|+|+|||+|+-++.+| +...+|+|||+||.-+++++.|++.-|+.++|+++++|..+.++..+ +|.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA--~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP- 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFA--RTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP- 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHH--HTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHH--HhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC-
Confidence 479999999999999999 44678999999999999999999999999999999999999876322 89999999
Q ss_pred CC
Q 036185 973 PT 974 (1057)
Q Consensus 973 P~ 974 (1057)
|-
T Consensus 78 PW 79 (163)
T PF09445_consen 78 PW 79 (163)
T ss_dssp -B
T ss_pred CC
Confidence 63
No 95
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=5.8e-09 Score=122.73 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=88.8
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC--CCCCccEEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA--PKGVANRVC 968 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~--~~~~~D~Vi 968 (1057)
...+|++|||+|||.|+.++++|... +..+|+|+|+++.+++.+++|++..|+. +++++++|+..+. ....||+|+
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEE
Confidence 45789999999999999999998554 2458999999999999999999999997 6999999998764 245799999
Q ss_pred ECCCCCC-h--------------------------hHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 969 LGLIPTS-E--------------------------NSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 969 l~~~P~~-~--------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+|+ |-+ . ..+..+.+.|+ +||+|.+.+|+-..
T Consensus 313 ~Da-PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~ 371 (431)
T PRK14903 313 VDA-PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCTVTK 371 (431)
T ss_pred ECC-CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCCh
Confidence 998 653 1 11556777777 79999999998654
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=1.8e-08 Score=112.13 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=79.4
Q ss_pred CEEEEEecceeEeeCCCHHHHHHHhh----ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 866 GILYSFDATKCMFSWGNLSEKLRMAR----LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 866 gi~~~~d~~~~~f~~~~~~er~r~~~----~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
|..|.+++. .|.++..+|...-.. ...++.+|||++||+|.+++.++......+|+++|+++.+++.+++|++
T Consensus 77 ~~~~~~~~~--~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~- 153 (275)
T PRK09328 77 GLDFKVSPG--VLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK- 153 (275)
T ss_pred CcEEEECCC--ceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence 556666654 345665555432211 1346779999999999999999855445689999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCC
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
++...++.++++|..+.++...||+|+.|| |+.
T Consensus 154 ~~~~~~i~~~~~d~~~~~~~~~fD~Iv~np-Py~ 186 (275)
T PRK09328 154 HGLGARVEFLQGDWFEPLPGGRFDLIVSNP-PYI 186 (275)
T ss_pred hCCCCcEEEEEccccCcCCCCceeEEEECC-CcC
Confidence 444447999999997765556799999998 753
No 97
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.99 E-value=3.9e-09 Score=111.71 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=92.6
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCc-ccc---CCCCCccEEEEC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDN-RFT---APKGVANRVCLG 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~-~~~---~~~~~~D~Vil~ 970 (1057)
++.+|||++||+|.+++.++......+|+|+|+++.+++.+++|++.+++. ++.++++|+ ..+ ++...+|.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 578999999999999999885444457999999999999999999999985 799999999 433 234579999987
Q ss_pred CC-CC-----------ChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCcee
Q 036185 971 LI-PT-----------SENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWE 1027 (1057)
Q Consensus 971 ~~-P~-----------~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 1027 (1057)
.+ |. ...++..+.++|+ +||++++.+.... ....+.+.+++.|...+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~---------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG---------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH---------HHHHHHHHHHhCccccc
Confidence 52 21 2346777788888 7999988765432 24455666677776543
No 98
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.99 E-value=6.7e-09 Score=100.48 Aligned_cols=101 Identities=25% Similarity=0.290 Sum_probs=82.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~ 971 (1057)
.++++|||++||.|.+++.++.+.+..+|+++|+++.+++.+++|++.+++. +++++.+|+...++ ..+||.|++..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence 4678999999999999999985544568999999999999999999999887 69999999875433 35799999976
Q ss_pred CCCC-hhHHHHHHHHhhCCCcEEEEE
Q 036185 972 IPTS-ENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 972 ~P~~-~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
.+.. ...+..+.+.|+ +||++.+.
T Consensus 97 ~~~~~~~~l~~~~~~Lk-~gG~li~~ 121 (124)
T TIGR02469 97 SGGLLQEILEAIWRRLR-PGGRIVLN 121 (124)
T ss_pred cchhHHHHHHHHHHHcC-CCCEEEEE
Confidence 3333 456888888888 79988765
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.99 E-value=1.2e-08 Score=116.17 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=96.0
Q ss_pred CCEEEEEecceeEeeCCCHHHH-HHHhhcc--CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEK-LRMARLD--CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er-~r~~~~~--~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
.++.+...+. .|++.....- ..++..+ ....+|||++||+|.+++.++++....+|+++|+|+.|++.+++|++.
T Consensus 165 ~~l~i~~~pg--vFs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 165 DGLTVKTLPG--VFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred CCEEEEeCCC--CCCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4566666554 3445443222 1223322 234589999999999999998544445799999999999999999999
Q ss_pred cCCCccEEEEeCCccccCCCCCccEEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 942 NSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|++. .+++.+|+...+ ...||.|++|| |.. ...+..+.+.|+ +||.|++..+.+-.
T Consensus 243 n~l~--~~~~~~D~~~~~-~~~fDlIvsNP-PFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~ 308 (342)
T PRK09489 243 NGLE--GEVFASNVFSDI-KGRFDMIISNP-PFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLP 308 (342)
T ss_pred cCCC--CEEEEccccccc-CCCccEEEECC-CccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCC
Confidence 9986 477888987654 45799999999 642 355777888888 79999998887643
No 100
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.98 E-value=4.4e-09 Score=119.97 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=84.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
..+|++|||+|||+|.+.+.++ ..+ ..|+|+|+|+.+++.+++|++.+++.+ +.++++|+.+... ...||.|++||
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa-~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAG-LMG-AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHH-HhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECC
Confidence 5689999999999999999987 344 569999999999999999999999985 8999999988643 45799999998
Q ss_pred CCCC--------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 IPTS--------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ~P~~--------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.. ...+..+.+.|+ +||++.+.....
T Consensus 257 -Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~ 297 (329)
T TIGR01177 257 -PYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPTR 297 (329)
T ss_pred -CCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCC
Confidence 742 234666677777 799888776544
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=8.1e-09 Score=121.86 Aligned_cols=106 Identities=25% Similarity=0.199 Sum_probs=87.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil 969 (1057)
..+|++|||+|||+|.+++.++...+..+|+|+|+++.+++.+++|++.+++. +.++++|+.+... ...||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEE
Confidence 46799999999999999999985444358999999999999999999999985 6899999986532 356999999
Q ss_pred CCCCCCh---------------------------hHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 970 GLIPTSE---------------------------NSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 970 ~~~P~~~---------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|+ |.+. ..+..+.+.|+ +||.|.+.+|+-..
T Consensus 320 D~-Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~~~ 377 (427)
T PRK10901 320 DA-PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCSILP 377 (427)
T ss_pred CC-CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCh
Confidence 99 6431 24667777777 79999999987654
No 102
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.96 E-value=9.9e-09 Score=121.14 Aligned_cols=109 Identities=19% Similarity=0.128 Sum_probs=87.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vil 969 (1057)
..+|++|||+|||.|++++.++...+..+|+|+|+++.+++.+++|++.+|+..++.++.+|..... ....||+|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4678999999999999999998655555899999999999999999999998744556888876543 2457999999
Q ss_pred CCCCCC--------------------------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 970 GLIPTS--------------------------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 970 ~~~P~~--------------------------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|++-+. ...+..|.+.|+ +||.|.+.+|+-..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCh
Confidence 983232 123666777787 79999999998644
No 103
>PRK14968 putative methyltransferase; Provisional
Probab=98.95 E-value=1.8e-08 Score=105.24 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=90.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCcc-EEEEeCCccccCCCCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDH-CIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~-v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
.++.+|||++||+|.+++.++.. ..+|+++|+++++++.+++|+..|++.++ +.++++|..+.+....+|.|++|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~- 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP- 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC-
Confidence 57889999999999999999843 46799999999999999999999998644 889999988866655799999998
Q ss_pred CCCh--------------------------hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 973 PTSE--------------------------NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 973 P~~~--------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
|... .++..+.+.|+ +||.+.+....... .+.+.+.+.+.|+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~~~~~---------~~~l~~~~~~~g~~ 167 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQSSLTG---------EDEVLEYLEKLGFE 167 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEcccCC---------HHHHHHHHHHCCCe
Confidence 6421 23677778887 57766554433211 23455666777764
No 104
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.3e-08 Score=107.46 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=95.1
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
+.+|.+|+|.+.|+|.++..+|..-+ ..+|+..|+.++-++.|++|++.-++.+++.+..+|+.+......+|+|++|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDm 171 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDL 171 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcC
Confidence 57899999999999999999884334 46899999999999999999999999988999999999988777899999999
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.+...++.+..+|+ +||.+.+|.-.-
T Consensus 172 -p~PW~~le~~~~~Lk-pgg~~~~y~P~v 198 (256)
T COG2519 172 -PDPWNVLEHVSDALK-PGGVVVVYSPTV 198 (256)
T ss_pred -CChHHHHHHHHHHhC-CCcEEEEEcCCH
Confidence 999999999999998 688888887653
No 105
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.95 E-value=7.7e-09 Score=109.78 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=81.3
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
..++++|||++||+|+++..++...+ ..+|+++|+++.+++.+++|++.+++.++++++++|+.+.++ ...||.|+++
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 46789999999999999988875433 357999999999999999999999987779999999987654 4579999998
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEE
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
. .. ........+.|+ +||+|++-
T Consensus 150 ~-~~-~~~~~~l~~~L~-~gG~lvi~ 172 (205)
T PRK13944 150 A-AA-STIPSALVRQLK-DGGVLVIP 172 (205)
T ss_pred c-Cc-chhhHHHHHhcC-cCcEEEEE
Confidence 6 22 222345567777 79988764
No 106
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.94 E-value=8.2e-09 Score=110.16 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=93.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL- 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~- 971 (1057)
.+|.+|||++||+|-+++.+++..|..+|+++|+|+.+++.+++-++.-++.+ ++++++||.++.. ...||+|.+..
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeeh
Confidence 37999999999999999999977777789999999999999999999888775 9999999999864 66899998852
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+|.....+.++.|+|+ +||.+.+-++....
T Consensus 129 lrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD 161 (238)
T ss_pred hhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC
Confidence 3666788999999999 69999999987743
No 107
>PF13964 Kelch_6: Kelch motif
Probab=98.91 E-value=2.3e-09 Score=86.38 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=46.4
Q ss_pred CccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcc
Q 036185 343 PRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPR 395 (1057)
Q Consensus 343 ~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R 395 (1057)
||.+|++++++++|||+||.......++++++||+.+++|++++ +||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 68999999999999999999876688999999999999999997 888887
No 108
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.91 E-value=4e-09 Score=108.21 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=97.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC-CccEEEEeCCccccCC---CCCccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV-SDHCIVLEGDNRFTAP---KGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~-~~~v~~~~~D~~~~~~---~~~~D~Vi 968 (1057)
+++|++|||.|.|-||+++.++ ++||.+|+.+|.||.-+++++-|-=.-++ +.+++++.||+.++.+ ...||.||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~-~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEAL-ERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHH-HcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 5679999999999999999998 68998999999999999998876422222 2368999999999875 56799999
Q ss_pred ECCCCCC--------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 969 LGLIPTS--------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 969 l~~~P~~--------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
-|| |-+ ..+..+-.++|++.|+.+|+-++...--- ..++.+.+.+-.++.|+.
T Consensus 211 HDP-PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr---G~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 211 HDP-PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR---GLDLPKGVAERLRRVGFE 271 (287)
T ss_pred eCC-CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc---cCChhHHHHHHHHhcCce
Confidence 999 754 46688888999977778888888653211 122234555556666775
No 109
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.90 E-value=1.2e-08 Score=109.16 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=80.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
+.++++|||++||+|++++.+|...+ ..+|+++|++|.+++.+++|++.++++ +++++++|+.+.++ ...||+|+++
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcccCCCCEEEEc
Confidence 57899999999999999999885433 246999999999999999999999996 79999999987654 3579999998
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEE
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
..+ ........+.|+ +||+|++-
T Consensus 154 ~~~--~~~~~~~~~~L~-~gG~lv~~ 176 (215)
T TIGR00080 154 AAG--PKIPEALIDQLK-EGGILVMP 176 (215)
T ss_pred CCc--ccccHHHHHhcC-cCcEEEEE
Confidence 722 222344566776 79988874
No 110
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.88 E-value=1.8e-08 Score=106.04 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=84.8
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC----CCCCccEEEEC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA----PKGVANRVCLG 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~----~~~~~D~Vil~ 970 (1057)
...+|||++||.|.+++.+|.......|+|+|+++.+++.+++|++.+++. ++.++++|+.+++ +...+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999986554567999999999999999999999997 8999999998753 24479999998
Q ss_pred CCCCC-------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 971 LIPTS-------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 971 ~~P~~-------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
. |.+ ..++..+.++|+ +||.|++.+...
T Consensus 95 ~-pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td~~ 135 (194)
T TIGR00091 95 F-PDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTDNE 135 (194)
T ss_pred C-CCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeCCH
Confidence 6 432 246777888888 799998876543
No 111
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.87 E-value=1.1e-08 Score=110.62 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=85.9
Q ss_pred HhhccCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-------
Q 036185 889 MARLDCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP------- 960 (1057)
Q Consensus 889 ~~~~~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~------- 960 (1057)
++....+.++|||++||+|+-++.+|+.. +..+|+++|++|++++.+++|++.+++.++++++.+|+.+.++
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCC
Confidence 33445668899999999999877776433 3568999999999999999999999999899999999988754
Q ss_pred CCCccEEEECCCC-CChhHHHHHHHHhhCCCcEEEE
Q 036185 961 KGVANRVCLGLIP-TSENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 961 ~~~~D~Vil~~~P-~~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
...||.|++|... .....+..+++.|+ +||+|.+
T Consensus 142 ~~~fD~VfiDa~k~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADKPNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcC-CCeEEEE
Confidence 2579999999721 12566888888888 7998875
No 112
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.86 E-value=9e-09 Score=110.93 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=80.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
..+|++|||++||+|-+++.++++.+ ..+|+++|+++.+++.+++.++..+.. +|+++++|+.+... ...||.|.+.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 56789999999999999999885544 347999999999999999999998887 79999999998753 6789999875
Q ss_pred C----CCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 971 L----IPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 971 ~----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
. +|.....+.+..|+|+ +||.+.+.++++..
T Consensus 124 fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~ 158 (233)
T PF01209_consen 124 FGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR 158 (233)
T ss_dssp S-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S
T ss_pred hhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC
Confidence 3 3555777999999998 79999999998754
No 113
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=5.8e-08 Score=106.84 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=82.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC--CCCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA--PKGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~--~~~~~D~Vil~~ 971 (1057)
.++.+|||++||+|.+++.++. .+ .+|+++|+++.+++.++++++.+++.++++++++|+.+.. ....||.|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~-~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAE-LG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHH-cC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4567999999999999999983 44 5799999999999999999999998778999999998764 246799999864
Q ss_pred C----CCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 972 I----PTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 972 ~----P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
. +.....+..+.++|+ +||+|.+..
T Consensus 121 vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLR-PGGALSLMF 149 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcC-CCeEEEEEE
Confidence 2 334566888888888 699886543
No 114
>PLN02476 O-methyltransferase
Probab=98.83 E-value=1.9e-08 Score=109.97 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC------
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP------ 960 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~------ 960 (1057)
+++....+.++|||+++|+|+.++.+|...+ ..+|+++|.+|++++.+++|++.+|+.++|+++.||+.+.++
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 4444456788999999999999999984322 346999999999999999999999999899999999998774
Q ss_pred -CCCccEEEECCCCCC--hhHHHHHHHHhhCCCcEEEEE
Q 036185 961 -KGVANRVCLGLIPTS--ENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 961 -~~~~D~Vil~~~P~~--~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
...||.|++|. +.. ...+..++++|+ +||+|.+-
T Consensus 191 ~~~~FD~VFIDa-~K~~Y~~y~e~~l~lL~-~GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDA-DKRMYQDYFELLLQLVR-VGGVIVMD 227 (278)
T ss_pred cCCCCCEEEECC-CHHHHHHHHHHHHHhcC-CCcEEEEe
Confidence 24799999998 543 456888888887 69987764
No 115
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.82 E-value=9.8e-08 Score=105.19 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=85.3
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHH--cCCCccEEEEeCCccccCC-CCCccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQA--NSVSDHCIVLEGDNRFTAP-KGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~--N~~~~~v~~~~~D~~~~~~-~~~~D~Vi 968 (1057)
+.++.+|||++||+|.+++.++...+ ..+|+|+|+++.+++.+++++.. .+...++.++++|+.++.. ...||.|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 45788999999999999998884433 24799999999999999987642 2223479999999988643 55799998
Q ss_pred ECC----CCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 969 LGL----IPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 969 l~~----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
++. +|.....+.++.++|+ +||.+.+.++....
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~ 187 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKST 187 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCC
Confidence 863 2445677889999998 79999888877643
No 116
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=2e-08 Score=103.96 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=64.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcE---------EEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARL---------VYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKG 962 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~---------V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~ 962 (1057)
..+|+.|+|.|||+|+|.+++|....... ++|+|+++.+++.+++|++..++.+.+.+.+.|+.++. ...
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 46889999999999999999985433333 88999999999999999999999888999999999987 456
Q ss_pred CccEEEECCCCCC
Q 036185 963 VANRVCLGLIPTS 975 (1057)
Q Consensus 963 ~~D~Vil~~~P~~ 975 (1057)
.+|.||.|| |+.
T Consensus 106 ~~d~IvtnP-PyG 117 (179)
T PF01170_consen 106 SVDAIVTNP-PYG 117 (179)
T ss_dssp BSCEEEEE---ST
T ss_pred CCCEEEECc-chh
Confidence 899999999 876
No 117
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.81 E-value=4.5e-08 Score=104.42 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=79.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
+.+|++|||++||+|+++..++...+. .+|+++|++++.++.+++|++.+++. +++++++|+....+ ...||+|+++
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcCCCcCEEEEC
Confidence 568999999999999999888754342 58999999999999999999999986 79999999987554 4579999987
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEE
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
-. .........+.|+ +||.|.+.
T Consensus 153 ~~--~~~~~~~l~~~Lk-pgG~lvi~ 175 (212)
T PRK13942 153 AA--GPDIPKPLIEQLK-DGGIMVIP 175 (212)
T ss_pred CC--cccchHHHHHhhC-CCcEEEEE
Confidence 51 1222344555676 79988775
No 118
>PLN02244 tocopherol O-methyltransferase
Probab=98.81 E-value=3e-08 Score=113.53 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEECC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLGL- 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~~- 971 (1057)
.++++|||++||+|.+++.++++.+ .+|+++|+++.+++.++++++.+++.++++++.+|+.+.. +...||.|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 5678999999999999999984444 4799999999999999999999998778999999998764 356799998753
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|.....+.++.++|+ +||.+.+.++.+
T Consensus 196 ~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~ 226 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAA-PGGRIIIVTWCH 226 (340)
T ss_pred hhccCCHHHHHHHHHHHcC-CCcEEEEEEecc
Confidence 2333567888889998 799998877654
No 119
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.80 E-value=7.2e-08 Score=103.93 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=93.9
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc-CC---CCCccEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT-AP---KGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~-~~---~~~~D~V 967 (1057)
+.+|.+||+.+.|+|.+++.+|..-+ ..+|+..|.+++-++.|++|++.+++.+++++.+.|+.+. .. ...+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 57999999999999999999984333 4589999999999999999999999988999999999642 22 3569999
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
+||+ |.+...+..+.++|+++||+|.+|.-.-+ . +.+..+++++.|+.
T Consensus 118 fLDl-p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--Q-------v~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 118 FLDL-PDPWEAIPHAKRALKKPGGRICCFSPCIE--Q-------VQKTVEALREHGFT 165 (247)
T ss_dssp EEES-SSGGGGHHHHHHHE-EEEEEEEEEESSHH--H-------HHHHHHHHHHTTEE
T ss_pred EEeC-CCHHHHHHHHHHHHhcCCceEEEECCCHH--H-------HHHHHHHHHHCCCe
Confidence 9999 99999999999999337998877754322 1 34455566677864
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.80 E-value=5.3e-08 Score=105.37 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=72.9
Q ss_pred ceeEeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC
Q 036185 874 TKCMFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG 953 (1057)
Q Consensus 874 ~~~~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~ 953 (1057)
...||.|....... +. ....+.+|||++||+|.+++.++.+.+..+|+++|+||.+++.+++|. . +++++++
T Consensus 45 ~G~FfTP~~i~~~f-~~-~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~ 116 (279)
T PHA03411 45 SGAFFTPEGLAWDF-TI-DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITS 116 (279)
T ss_pred ceeEcCCHHHHHHH-Hh-ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEEC
Confidence 46677777765442 22 233456899999999999999885444568999999999999999874 2 5789999
Q ss_pred CccccCCCCCccEEEECCCCCC
Q 036185 954 DNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 954 D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
|++++....+||.|+.|| |..
T Consensus 117 D~~e~~~~~kFDlIIsNP-PF~ 137 (279)
T PHA03411 117 DVFEFESNEKFDVVISNP-PFG 137 (279)
T ss_pred chhhhcccCCCcEEEEcC-Ccc
Confidence 999887666899999999 754
No 121
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.79 E-value=7e-08 Score=107.26 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=87.9
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~ 970 (1057)
+.+|++|||++||+|..++.+++..+. .+|+++|+++.+++.+++|++.+++. +++++.+|+.+.. +...||.|+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEc
Confidence 567999999999999998877754454 47999999999999999999999986 7999999987754 24579999876
Q ss_pred C----CCCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 971 L----IPTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 971 ~----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
. .|.....+.++.++|+ +||+|++.+....
T Consensus 154 ~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~ 187 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLR 187 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeecc
Confidence 4 3444677999999998 7999999876543
No 122
>PLN02672 methionine S-methyltransferase
Probab=98.79 E-value=8.7e-08 Score=121.43 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=83.0
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHHh-hccC----CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRMA-RLDC----KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~~-~~~~----~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
.|+.|.+++. -|-|+.-+|..--. .... ++.+|||++||+|.+++.++++....+|+|+|+||.|++.+++|+
T Consensus 85 ~~l~~~V~p~--VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 85 KKLTMMEIPS--IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred cCCceeeCCC--cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4778888876 35677666554221 1111 356899999999999999986555568999999999999999999
Q ss_pred HHcCCC---------------ccEEEEeCCccccCCC--CCccEEEECCCCC
Q 036185 940 QANSVS---------------DHCIVLEGDNRFTAPK--GVANRVCLGLIPT 974 (1057)
Q Consensus 940 ~~N~~~---------------~~v~~~~~D~~~~~~~--~~~D~Vil~~~P~ 974 (1057)
++|+++ ++++++++|..+.+.. .+||+||.|| |+
T Consensus 163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNP-PY 213 (1082)
T PLN02672 163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCI-PQ 213 (1082)
T ss_pred HHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECC-Cc
Confidence 998653 4799999999887753 3699999999 64
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=6.6e-08 Score=101.75 Aligned_cols=105 Identities=25% Similarity=0.285 Sum_probs=85.4
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEE----eCCccccCC--CCCccEEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVL----EGDNRFTAP--KGVANRVC 968 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~----~~D~~~~~~--~~~~D~Vi 968 (1057)
++..+||+|||+|.+++.++...+-..|+|+|.++.|+..+.+|++.+++.+++.++ ++|+.+-.+ .++.|.++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 466899999999999999995445567999999999999999999999999999988 555555432 46799999
Q ss_pred ECCCCCCh-------------------------------hHHHHHHHHhhCCCcEEEEEccccc
Q 036185 969 LGLIPTSE-------------------------------NSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 969 l~~~P~~~-------------------------------~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.|| |+-. .+|..|.+.|+ +||.+.+......
T Consensus 228 sNP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~le~~~~~ 289 (328)
T KOG2904|consen 228 SNP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQLELVERK 289 (328)
T ss_pred cCC-CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEEEecccc
Confidence 999 8531 12788889998 6999888877543
No 124
>PTZ00146 fibrillarin; Provisional
Probab=98.77 E-value=1.6e-07 Score=102.94 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=87.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC----CCCCccEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA----PKGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~----~~~~~D~V 967 (1057)
+.+|.+|||++||+|++++++|...+ ...|||||+++++.+.+.+-++.. .||.++.+|++... ....+|+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEE
Confidence 57899999999999999999996554 347999999999887776655432 36889999987532 12468999
Q ss_pred EECCC-CCCh-hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHH-HHHHHHHHHhcCCc
Q 036185 968 CLGLI-PTSE-NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHV-SKSIYEIARSEGHR 1025 (1057)
Q Consensus 968 il~~~-P~~~-~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~g~~ 1025 (1057)
++|.. |... .....+.+.|+ +||.+.+..-....+.....+++ .+++ +.+++.|++
T Consensus 207 ~~Dva~pdq~~il~~na~r~LK-pGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLK-NGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhcc-CCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCc
Confidence 99873 2212 23446677887 79988884333333332223333 3334 556777776
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.76 E-value=3.2e-08 Score=104.68 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=68.1
Q ss_pred EeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhC---CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC
Q 036185 877 MFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRA---KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG 953 (1057)
Q Consensus 877 ~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~---~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~ 953 (1057)
||.|.....+.. ... ..+.+|||++||+|.|++.++.+. +...|+|+|+|+.|++.+++|+. ++.++++
T Consensus 33 FfTP~~iAr~~~-i~~-~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~ 104 (241)
T PHA03412 33 FFTPIGLARDFT-IDA-CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA 104 (241)
T ss_pred cCCCHHHHHHHH-Hhc-cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc
Confidence 556665544322 222 346799999999999999988432 24479999999999999998852 4788999
Q ss_pred CccccCCCCCccEEEECCCCCC
Q 036185 954 DNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 954 D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
|+.......+||+||.|| |..
T Consensus 105 D~~~~~~~~~FDlIIsNP-PY~ 125 (241)
T PHA03412 105 DALTTEFDTLFDMAISNP-PFG 125 (241)
T ss_pred chhcccccCCccEEEECC-CCC
Confidence 998654455799999999 865
No 126
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.75 E-value=2.5e-08 Score=104.44 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=87.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-CCccEEEEC--
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-GVANRVCLG-- 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~Vil~-- 970 (1057)
..|.+|||++||.|.++.++| +.|+ .|+|+|+++.+|+.++.-+..+++. +...+..+.+.... ++||+|++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mA-r~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLA-RLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHH-HCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhH
Confidence 468899999999999999999 5664 6999999999999999999999995 78888999888764 789999774
Q ss_pred --CCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 971 --LIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 971 --~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
-+|.+..++..+.++++ |||++.+.+.-.
T Consensus 134 lEHv~dp~~~~~~c~~lvk-P~G~lf~STinr 164 (243)
T COG2227 134 LEHVPDPESFLRACAKLVK-PGGILFLSTINR 164 (243)
T ss_pred HHccCCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence 34776777777777777 799999998865
No 127
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.74 E-value=5.8e-08 Score=110.58 Aligned_cols=103 Identities=17% Similarity=0.353 Sum_probs=87.6
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc---CCCCCccEEEECC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT---APKGVANRVCLGL 971 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~---~~~~~~D~Vil~~ 971 (1057)
.+..+||++||+|.|.+.+|+......++|+|+++.+++.+.+++..++++ |+.++++|+..+ ++...+|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 467999999999999999996655567999999999999999999999997 699999999765 3466799999986
Q ss_pred CCCC-----------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 IPTS-----------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ~P~~-----------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.+ ..++..+.++|+ +||.+++-+...
T Consensus 201 -PdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~~ 238 (390)
T PRK14121 201 -PVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDSE 238 (390)
T ss_pred -CCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEECH
Confidence 544 466888888888 799999987764
No 128
>PRK04457 spermidine synthase; Provisional
Probab=98.73 E-value=1.1e-07 Score=104.62 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=87.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~ 971 (1057)
.+.++|||++||.|.++..+++.....+|++||+||..++.++++...++..++++++.+|+.+++. ...||+|++|.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4578999999999999998875555668999999999999999998877665689999999998875 34799999986
Q ss_pred CCCC--------hhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 972 IPTS--------ENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 972 ~P~~--------~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.... ..++..+.+.|+ +||++.+-.+...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~~~ 181 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCCCc
Confidence 4322 477888888888 7999988655443
No 129
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.73 E-value=1.6e-07 Score=102.83 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=83.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHh--CCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVR--AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~--~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
..++.+|||++||+|.+++.++.. ....+|+++|++|.+++.+++++..++...++.++++|+.+... ..+|.|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 467889999999999999888742 23457999999999999999999998887789999999987643 348999887
Q ss_pred CCCCC------hhHHHHHHHHhhCCCcEEEEEccc
Q 036185 971 LIPTS------ENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 971 ~~P~~------~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
..-+. ...+....+.|+ +||.+.+.+..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~~ 166 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLN-PGGALVLSEKF 166 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence 42111 345777778887 79999888754
No 130
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.72 E-value=8.3e-08 Score=101.23 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=77.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
.++.+|||++||+|.+++.+|+ .+ .+|+|+|+++.+++.++++++.+++. ++.++.+|+.+......||.|++...-
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~-~g-~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAA-NG-FDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHH-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCEEEEecch
Confidence 3567999999999999999983 44 47999999999999999999999986 689999998776444569999876532
Q ss_pred C------ChhHHHHHHHHhhCCCcEEEE
Q 036185 974 T------SENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 974 ~------~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
+ ....+....++|+ +||++.+
T Consensus 106 ~~~~~~~~~~~l~~i~~~Lk-pgG~~~~ 132 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTK-PGGYNLI 132 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcC-CCcEEEE
Confidence 1 1355667777777 6887433
No 131
>PLN02772 guanylate kinase
Probab=98.69 E-value=6.8e-08 Score=109.40 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=76.5
Q ss_pred CCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE-CCEEEEEcccCCCccc
Q 036185 341 PSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI-GSKIYVFGGLNNDTIF 419 (1057)
Q Consensus 341 P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~-~~~iyv~GG~~~~~~~ 419 (1057)
+.|+.+|+++.+++++||+||.++....++.+|+||..|++|....+.|..|.||.+|++|++ +++|+|+++.... -
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--D 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--c
Confidence 458899999999999999999887555889999999999999999999999999999999999 5789999876553 2
Q ss_pred ceEEEEECCCC
Q 036185 420 SSLHVLDTDTL 430 (1057)
Q Consensus 420 ~~v~~yD~~t~ 430 (1057)
.++|.+...|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 67888776654
No 132
>PF13964 Kelch_6: Kelch motif
Probab=98.69 E-value=3.4e-08 Score=79.57 Aligned_cols=49 Identities=31% Similarity=0.656 Sum_probs=45.0
Q ss_pred CcceeEEEEECCEEEEEecCCC-CcccCcEEEEECCCCeEEEeeccCCCCCCc
Q 036185 444 ARHSHSMLAYGSRLYMFGGYNG-EKALGDLYTFDVHACLWKKEDIAARSPHAR 495 (1057)
Q Consensus 444 ~r~~~s~~~~~~~lyv~GG~~~-~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R 495 (1057)
||.+|+++.++++||++||..+ ...++++++||+.+++|+++ +++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC---CCCCCCC
Confidence 6899999999999999999988 78899999999999999998 6788776
No 133
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.68 E-value=8.6e-08 Score=107.94 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=84.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL- 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~- 971 (1057)
.+|.+|||++||.|.++..++ +.++ .|++||.++.+++.+++++..++...+++++++|+.++.. ...||.|++.-
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La-~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLA-RMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHH-HcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 357799999999999999988 3444 6999999999999999999888765689999999987643 45799998743
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
++....++....++|+ +||.+.+....+
T Consensus 208 LeHv~d~~~~L~~l~r~Lk-PGG~liist~nr 238 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTI-PNGATVLSTINR 238 (322)
T ss_pred HHhcCCHHHHHHHHHHHcC-CCcEEEEEECCc
Confidence 3445677777778887 799988886543
No 134
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.67 E-value=3.1e-07 Score=96.01 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=94.3
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCC------cEEEEEecCHHHHHHHHHHHHHcCCCcc--EEEEeCCccccCC-CCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKA------RLVYACEWNPCAVEALKHNLQANSVSDH--CIVLEGDNRFTAP-KGV 963 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a------~~V~avD~n~~ai~~~~~N~~~N~~~~~--v~~~~~D~~~~~~-~~~ 963 (1057)
..++.+|||+.+|+|-+++.++...+. ++|+.+|+||+++..+++-++.-++... ++++++|+.++.. ...
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 356789999999999999999876666 7899999999999999999988888654 8999999999764 567
Q ss_pred ccEEEEC----CCCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 964 ANRVCLG----LIPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 964 ~D~Vil~----~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+|...+. ..++..+.+.+|.|+|+ +||.+.+-+|++..
T Consensus 178 ~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFSKVE 219 (296)
T ss_pred ceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEccccc
Confidence 8988774 23777899999999999 79999999999976
No 135
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.65 E-value=1.6e-07 Score=105.22 Aligned_cols=98 Identities=14% Similarity=-0.011 Sum_probs=75.7
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC-
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP- 973 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P- 973 (1057)
++.+|||++||+|.+++.+| ..| .+|+|+|+++.|++.++++++.+++ ++.+...|+........||.|++...-
T Consensus 120 ~~~~vLDlGcG~G~~~~~la-~~g-~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLA-LLG-FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHH-HCC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 44599999999999999998 345 4799999999999999999999998 588888888765445679999876421
Q ss_pred -----CChhHHHHHHHHhhCCCcEEEEEc
Q 036185 974 -----TSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 974 -----~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
.....+....+.|+ +||++.+.+
T Consensus 196 ~l~~~~~~~~l~~~~~~Lk-pgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTN-PGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 11344666666777 699865543
No 136
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.65 E-value=9.1e-08 Score=105.94 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=84.1
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC-CccccCC-CCCccEEEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG-DNRFTAP-KGVANRVCL 969 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~-D~~~~~~-~~~~D~Vil 969 (1057)
.+++|+.|||.|||||+|-+.+. ..|+ +|+++|++..+++.++.|++.-++++ ..++.. ||....- +..+|.|+.
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEag-l~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAG-LMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhh-hcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCCCccceEEe
Confidence 46899999999999999999987 5666 59999999999999999999999884 666666 9988754 345999999
Q ss_pred CCCCCCh--------------hHHHHHHHHhhCCCcEEEEEcc
Q 036185 970 GLIPTSE--------------NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 970 ~~~P~~~--------------~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|| |+.. +++..+-..|+ +||++.+-..
T Consensus 271 DP-PYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 271 DP-PYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred cC-CCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 99 8652 33666677777 6998887776
No 137
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.64 E-value=1.4e-07 Score=99.36 Aligned_cols=98 Identities=15% Similarity=0.037 Sum_probs=74.5
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPT 974 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~ 974 (1057)
++.+|||++||+|.+++.+|+ .+ ..|+|+|+++.+++.++++++.+++. +.+..+|.........||.|++..+-+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~-~g-~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL-AG-YDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH-CC-CeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEEecccc
Confidence 457999999999999999983 44 47999999999999999999999884 777778875433345699998864211
Q ss_pred ------ChhHHHHHHHHhhCCCcEEEEEc
Q 036185 975 ------SENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 975 ------~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
....+..+.++|+ +||++.+..
T Consensus 106 ~~~~~~~~~~l~~~~~~Lk-pgG~lli~~ 133 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTR-PGGYNLIVA 133 (195)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCcEEEEEE
Confidence 1345667777787 799754443
No 138
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.64 E-value=2.2e-07 Score=100.11 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC----C
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL----I 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~----~ 972 (1057)
++|||++||.|.+++.++...+...|+++|+++.+++.++++++..++.+++.++.+|..+......||+|+... +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999998544445799999999999999999999999889999999986554345799998632 2
Q ss_pred CCChhHHHHHHHHhhCCCcEEEEEcccccch--h-HHHHH---HHHHHHHHHHHhcCCce
Q 036185 973 PTSENSWVTAVQALRSEGGTLHVHGNVKDSE--E-KLWAE---HVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 973 P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~--~-~~~~~---~~~~~i~~~~~~~g~~~ 1026 (1057)
+.....+..+.++|+ +||++.+.+...... . ..... .....+.+++.+.|+.+
T Consensus 81 ~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 81 KDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred CCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 344566777888887 799999887653210 0 00000 01245666777888763
No 139
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.64 E-value=3.9e-07 Score=97.88 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
.++.+|||++||+|.++..++ ..+ .+|+|+|+++.+++.+++++..++..+++.+..+|+.... ..||+|++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la-~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELA-KRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHH-HCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEh
Confidence 468899999999999999998 334 4799999999999999999998887668999999988764 679999864
No 140
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.64 E-value=2.9e-07 Score=98.34 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=79.5
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
..++.+|||++||+|+++..++. .. .+|+++|+++.+++.+++|++.+++. +++++.+|..+.++ ...||+|+++.
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~-~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAH-LV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHH-Hh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCEEEEcc
Confidence 46789999999999999987773 33 47999999999999999999999987 59999999877554 35799999986
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+ .........+.|+ +||.|.+.-.
T Consensus 153 -~-~~~~~~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 153 -A-APEIPRALLEQLK-EGGILVAPVG 176 (212)
T ss_pred -C-chhhhHHHHHhcC-CCcEEEEEEc
Confidence 2 2233444556676 7998887654
No 141
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.64 E-value=9.6e-08 Score=105.36 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=79.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEE-CC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCL-GL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil-~~ 971 (1057)
+++|++|||++||-|.+++.+|++.|+ +|+++.++++.++.+++.++..|+.+++++...|.+++.. +||+|+. +.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~fD~IvSi~~ 136 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KFDRIVSIEM 136 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CCCEEEEEec
Confidence 579999999999999999999965566 6999999999999999999999999999999999988643 7999765 32
Q ss_pred CCCC-----hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 972 IPTS-----ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 972 ~P~~-----~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+-+. ..++..+-++|+ +||.+.++.++...
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLK-PGGRLVLQTITHRD 171 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEEE--
T ss_pred hhhcChhHHHHHHHHHHHhcC-CCcEEEEEeccccc
Confidence 2222 455777778887 79999999988644
No 142
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=2.6e-07 Score=103.93 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=79.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
+.++++|||++||+|++++.+|+..+. ..|+++|+++.+++.+++|++.++++ ++.++++|+.+.++ ...||+|+++
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccccCCccEEEEC
Confidence 567899999999999999999854442 46999999999999999999999986 79999999877654 3469999987
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
. . ........++.|+ +||.+++..
T Consensus 157 ~-g-~~~ip~~~~~~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 157 V-G-VDEVPETWFTQLK-EGGRVIVPI 180 (322)
T ss_pred C-c-hHHhHHHHHHhcC-CCCEEEEEe
Confidence 4 2 1222334566777 688877754
No 143
>PRK00811 spermidine synthase; Provisional
Probab=98.62 E-value=6.8e-07 Score=99.58 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=83.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC--C--CccEEEEeCCccccCC--CCCccEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS--V--SDHCIVLEGDNRFTAP--KGVANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~--~--~~~v~~~~~D~~~~~~--~~~~D~V 967 (1057)
.+.++|||++||.|.++..++++.++.+|++||+++..++.+++++...+ . +.+++++.+|++.++. ..+||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999854467899999999999999999886432 2 3589999999999875 4679999
Q ss_pred EECCCCC--------ChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 968 CLGLIPT--------SENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 968 il~~~P~--------~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
++|+.+. ...++..+.+.|+ +||++.+..-..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~~~~ 194 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQSGSP 194 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeCCCc
Confidence 9986321 1344667777777 799988865443
No 144
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.61 E-value=7.3e-08 Score=77.29 Aligned_cols=48 Identities=40% Similarity=0.854 Sum_probs=42.9
Q ss_pred CCEEEEEcccC-CCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE
Q 036185 353 GDHMFIIGGRA-DPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI 403 (1057)
Q Consensus 353 ~~~Iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~ 403 (1057)
+++||||||.+ .....++++|+||+.+++|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 4467899999999999999998 489999999999874
No 145
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.61 E-value=6.2e-07 Score=101.49 Aligned_cols=105 Identities=21% Similarity=0.134 Sum_probs=83.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
..++.+|||++||+|.+++.++++....+|+++|+ |.+++.+++|++..++.++++++.+|.++.... .+|.|++.-+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 35678999999999999999986554457999998 899999999999999988999999999864222 3698876543
Q ss_pred CCC------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 973 PTS------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 973 P~~------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.+. ...+..+.+.|+ +||.|.++++.-
T Consensus 225 lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcC-CCCEEEEEEecc
Confidence 331 234777778887 799999998744
No 146
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.60 E-value=4.9e-07 Score=106.61 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=88.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil 969 (1057)
..+|++|||++||.|+=+.++|...+ ...|+|+|+++.-++.+++|++..|+. ++.+.+.|+..+.. ...||+|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence 46899999999999999999986543 347999999999999999999999997 69999999886532 346999999
Q ss_pred CCCCCC---------------------------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 970 GLIPTS---------------------------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 970 ~~~P~~---------------------------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|. |=+ ...+..|.++|+ +||+|+|.+|+=..
T Consensus 190 Da-PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT~~~ 247 (470)
T PRK11933 190 DA-PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCTLNR 247 (470)
T ss_pred cC-CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCCCCH
Confidence 99 744 122667778887 79999999998544
No 147
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.60 E-value=7.2e-07 Score=94.88 Aligned_cols=98 Identities=21% Similarity=0.186 Sum_probs=74.0
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc---------CCC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT---------APK 961 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~---------~~~ 961 (1057)
.+.+|.+|||++||+|.++..++++.+. ..|+|||+++ .+.+. +++++++|+.+. +..
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~-~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIV-GVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCC-CcEEEecCCCChHHHHHHHHHhCC
Confidence 3567899999999999999998865443 5899999999 13444 589999998874 234
Q ss_pred CCccEEEECCCCCC---------------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 962 GVANRVCLGLIPTS---------------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~---------------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
..+|.|+.++.|.. ...+..+.++|+ +||.+.+..+..+.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~ 170 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEG 170 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcC
Confidence 57999999875533 124566777777 79999998776643
No 148
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.57 E-value=5.6e-08 Score=96.41 Aligned_cols=88 Identities=24% Similarity=0.198 Sum_probs=73.6
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
.+++.||++|+|.+++.+| ..|++|+|+|.||.-..+|++|++.+|.. +++++.+|++.+-. ..+|+|++-++-+.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa--~~A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f-e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAA--HAAERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF-ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHH--hhhceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc-cccceeHHHHhhHH
Confidence 3789999999999999988 45899999999999999999999999987 79999999998754 56899998775443
Q ss_pred ------hhHHHHHHHHhh
Q 036185 976 ------ENSWVTAVQALR 987 (1057)
Q Consensus 976 ------~~~~~~a~~~l~ 987 (1057)
.+.+..++..|+
T Consensus 109 Li~E~qVpV~n~vleFLr 126 (252)
T COG4076 109 LIEEKQVPVINAVLEFLR 126 (252)
T ss_pred hhcccccHHHHHHHHHhh
Confidence 233556666665
No 149
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.57 E-value=6.3e-07 Score=98.89 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=101.9
Q ss_pred eEeeCCCHHHHHHHhhc--cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC
Q 036185 876 CMFSWGNLSEKLRMARL--DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG 953 (1057)
Q Consensus 876 ~~f~~~~~~er~r~~~~--~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~ 953 (1057)
-+++++....-..++.. +.++.+|||++||+|.++..++...+ .+|+++|+++.+++.+++++.. .+++.++.+
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~ 106 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD---KNKIEFEAN 106 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc---CCceEEEEC
Confidence 35677766666666665 46788999999999999998874333 4799999999999999998754 247999999
Q ss_pred CccccC-CCCCccEEEECC-CC-----CChhHHHHHHHHhhCCCcEEEEEcccccch--hH-HHHH---H------HHHH
Q 036185 954 DNRFTA-PKGVANRVCLGL-IP-----TSENSWVTAVQALRSEGGTLHVHGNVKDSE--EK-LWAE---H------VSKS 1014 (1057)
Q Consensus 954 D~~~~~-~~~~~D~Vil~~-~P-----~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~--~~-~~~~---~------~~~~ 1014 (1057)
|+.+.. +...||+|+... +. .....+..+.++|+ +||++.+.+...... .. .... . ..+.
T Consensus 107 D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (263)
T PTZ00098 107 DILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQE 185 (263)
T ss_pred CcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHH
Confidence 987643 356799999842 12 22455777888888 799999887754321 00 0100 0 1146
Q ss_pred HHHHHHhcCCc
Q 036185 1015 IYEIARSEGHR 1025 (1057)
Q Consensus 1015 i~~~~~~~g~~ 1025 (1057)
..+++++.|+.
T Consensus 186 ~~~~l~~aGF~ 196 (263)
T PTZ00098 186 YGDLIKSCNFQ 196 (263)
T ss_pred HHHHHHHCCCC
Confidence 67777888876
No 150
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.56 E-value=9.3e-08 Score=75.87 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=41.2
Q ss_pred CccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEee
Q 036185 343 PRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLE 386 (1057)
Q Consensus 343 ~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 386 (1057)
||.+|++++++++|||+||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 68999999999999999999887789999999999999999997
No 151
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.56 E-value=4.8e-07 Score=93.07 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
.++++|||++||.|.++..++. . +.+|+|+|+|+.+++.+++|+.. . ++++++++|+.++.. ...+|.|+.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~-~-~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~~~~d~vi~n~- 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLE-R-AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPKLQPYKVVGNL- 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHh-c-CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccccCCCEEEECC-
Confidence 5678999999999999999983 3 56899999999999999999854 2 379999999998754 33589999998
Q ss_pred CCC
Q 036185 973 PTS 975 (1057)
Q Consensus 973 P~~ 975 (1057)
|..
T Consensus 86 Py~ 88 (169)
T smart00650 86 PYN 88 (169)
T ss_pred Ccc
Confidence 765
No 152
>PLN02772 guanylate kinase
Probab=98.56 E-value=2.7e-07 Score=104.58 Aligned_cols=87 Identities=10% Similarity=0.174 Sum_probs=76.9
Q ss_pred CCCcceeEEEEECCEEEEEecCCCCc-ccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE-CCEEEEEeccCCCCCC
Q 036185 442 PCARHSHSMLAYGSRLYMFGGYNGEK-ALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY-KNYLGLFGGCPVRQNY 519 (1057)
Q Consensus 442 P~~r~~~s~~~~~~~lyv~GG~~~~~-~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~~~~~ 519 (1057)
+.++.+++++.+++++|+|||.++.. ..+.+++||..|++|......|..|.+|.+|+++++ +++|+|+++.... .
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--D 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--c
Confidence 55889999999999999999987764 789999999999999999889999999999999999 6789999975443 4
Q ss_pred CeEEEEECCCC
Q 036185 520 QELSLLDLQLH 530 (1057)
Q Consensus 520 ~~i~~yd~~~~ 530 (1057)
+++|.+.+.|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 78999988774
No 153
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=1.5e-06 Score=97.67 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=99.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH---HHc--CC-CccEEEEeCCccccCC--CCCcc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---QAN--SV-SDHCIVLEGDNRFTAP--KGVAN 965 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~---~~N--~~-~~~v~~~~~D~~~~~~--~~~~D 965 (1057)
.+.++||++++|.|+....+++.....+|++||++|+.++.+++.- +.| .+ +.+++++.+|+++++. ...||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 5567999999999998888875445678999999999999999731 122 23 3589999999999875 45799
Q ss_pred EEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEE
Q 036185 966 RVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIER 1035 (1057)
Q Consensus 966 ~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~ 1035 (1057)
+|++|+ |.+ ..++..+.+.|+ +||++.+...++.. ..+....+.+..++.+.... . -.-.
T Consensus 229 VIIvDl-~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~sp~~-----~~~~~~~i~~tL~~af~~v~--~-y~t~ 298 (374)
T PRK01581 229 VIIIDF-PDPATELLSTLYTSELFARIATFLT-EDGAFVCQSNSPAD-----APLVYWSIGNTIEHAGLTVK--S-YHTI 298 (374)
T ss_pred EEEEcC-CCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecCChhh-----hHHHHHHHHHHHHHhCCceE--E-EEEe
Confidence 999997 543 346777777887 79998887554422 12333445666666676432 1 1223
Q ss_pred eEeecCCceEEEE
Q 036185 1036 VKWYAPHIRHLVA 1048 (1057)
Q Consensus 1036 Vk~~aP~~~h~~~ 1048 (1057)
|-+| ++.|-+++
T Consensus 299 vPsy-g~~WgF~~ 310 (374)
T PRK01581 299 VPSF-GTDWGFHI 310 (374)
T ss_pred cCCC-CCceEEEE
Confidence 5566 33355554
No 154
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=8.4e-07 Score=96.53 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=88.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC-C
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG-L 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~-~ 971 (1057)
+++|++|||++||=|.+++.||++-++ +|+|+++++...+.+++-++.-|++++++++..|-+++.. .||+|+-- .
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgm 146 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGM 146 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhh
Confidence 589999999999999999999965555 5999999999999999999999999899999999998853 49998742 2
Q ss_pred C-----CCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 972 I-----PTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 972 ~-----P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+ -....++..+.+.|+ +||.+.+|+.....
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPD 181 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCC
Confidence 1 112456777777787 79999999998765
No 155
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.54 E-value=1.1e-06 Score=99.58 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=91.8
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC-C
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL-I 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~-~ 972 (1057)
..|++|||++||.|++++.++ ..+++.|+|+|.++.++..++...+..+...++.++.+|+.++.....||.|++.. +
T Consensus 121 l~g~~VLDIGCG~G~~~~~la-~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRML-GAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 468899999999999999998 46777899999999988765544443333447999999998775456799998742 2
Q ss_pred ---CCChhHHHHHHHHhhCCCcEEEEEcccccchhHH---HHHH-----------HHHHHHHHHHhcCCc
Q 036185 973 ---PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKL---WAEH-----------VSKSIYEIARSEGHR 1025 (1057)
Q Consensus 973 ---P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~---~~~~-----------~~~~i~~~~~~~g~~ 1025 (1057)
+.....+..+.+.|+ +||.+.+.+..-+.+... +.+. -.+.+.+.+++.|+.
T Consensus 200 ~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~ 268 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFK 268 (322)
T ss_pred hccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCc
Confidence 233566888888888 699988776543221100 0000 134678888999986
No 156
>PRK03612 spermidine synthase; Provisional
Probab=98.54 E-value=3.3e-07 Score=110.54 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc-----CCC-ccEEEEeCCccccCC--CCCcc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN-----SVS-DHCIVLEGDNRFTAP--KGVAN 965 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N-----~~~-~~v~~~~~D~~~~~~--~~~~D 965 (1057)
.+.++|||++||.|..+..++++....+|++||+||+.++.+++|...+ .++ .+++++.+|+++++. .++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5678999999999999999885333478999999999999999975332 232 479999999999775 45799
Q ss_pred EEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC
Q 036185 966 RVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 966 ~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 1024 (1057)
+|++|+ |.. .+++..+.+.|+ +||++.+...++... .+....+.+.+++.|+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~~~~~~~-----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQSTSPYFA-----PKAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcC-CCeEEEEecCCcccc-----hHHHHHHHHHHHHcCC
Confidence 999997 543 135667777887 799998877654432 2223456666777776
No 157
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.53 E-value=9.7e-08 Score=76.54 Aligned_cols=47 Identities=34% Similarity=0.809 Sum_probs=32.0
Q ss_pred CccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCC
Q 036185 343 PRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVF 392 (1057)
Q Consensus 343 ~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 392 (1057)
||.+|+++.+ +++||||||.+.....++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6999999999 5899999999886679999999999999999995 555
No 158
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.51 E-value=4.5e-07 Score=99.80 Aligned_cols=95 Identities=23% Similarity=0.191 Sum_probs=76.2
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI- 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~- 972 (1057)
.++++|||++||+|.++..++.+....+|+++|+++.+++.++++ +++++++|+.++.+...||.|+++..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceEEEEehhh
Confidence 568899999999999999988543345799999999999998763 36789999987755568999999762
Q ss_pred ---CCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 973 ---PTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 973 ---P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
|.....+..+.+.|+ +||.+.+..
T Consensus 100 ~~~~d~~~~l~~~~~~Lk-pgG~l~~~~ 126 (255)
T PRK14103 100 QWVPEHADLLVRWVDELA-PGSWIAVQV 126 (255)
T ss_pred hhCCCHHHHHHHHHHhCC-CCcEEEEEc
Confidence 444666788888888 699888763
No 159
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.51 E-value=2.1e-06 Score=97.09 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEECC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLGL- 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~~- 971 (1057)
.++.+|||++||+|.+++.+++..+..+|+++|.++.+++.+++++..+ ++.++.+|+.+.. +...||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999999885545568999999999999999987533 4778999998754 245799998854
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEcccccchh-HHHHHH------HHHHHHHHHHhcCCc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEE-KLWAEH------VSKSIYEIARSEGHR 1025 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~-~~~~~~------~~~~i~~~~~~~g~~ 1025 (1057)
.|.....+.++.++|+ +||.+.+.+..+.... .....+ -.+.+.+.+++.|+.
T Consensus 188 L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~ 250 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFK 250 (340)
T ss_pred hhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCe
Confidence 2444667888999998 6998877544332110 000000 135677888889986
No 160
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.50 E-value=2.3e-06 Score=93.25 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=82.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhC--CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRA--KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~--~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
..++.+|||++||+|.+++.+++.. ...+|+++|+++.+++.++++++..+...++.++++|+.+.... .+|.|+++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~ 129 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILN 129 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeee
Confidence 3578899999999999999888431 24579999999999999999998776655799999999876533 48888776
Q ss_pred CC-CCC-----hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 971 LI-PTS-----ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 971 ~~-P~~-----~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.. .+. ...+..+.+.|+ +||.+.+.+...
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~~ 164 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFR 164 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeeccc
Confidence 42 111 345777888887 799999987644
No 161
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.50 E-value=2.3e-07 Score=74.35 Aligned_cols=47 Identities=36% Similarity=0.806 Sum_probs=42.7
Q ss_pred CCEEEEEecCC--CCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE
Q 036185 454 GSRLYMFGGYN--GEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY 503 (1057)
Q Consensus 454 ~~~lyv~GG~~--~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~ 503 (1057)
++++|||||.+ +...++++|.||+.+.+|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 678899999999999999998 789999999999863
No 162
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.50 E-value=6e-07 Score=100.95 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCC---------------------------------Cc------EEEEEecCHHHHHH
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAK---------------------------------AR------LVYACEWNPCAVEA 934 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~---------------------------------a~------~V~avD~n~~ai~~ 934 (1057)
.+++.++|.+||+|+|.|.+|.... +. .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4668999999999999999985331 11 37799999999999
Q ss_pred HHHHHHHcCCCccEEEEeCCccccCCC-CCccEEEECCCCCCh
Q 036185 935 LKHNLQANSVSDHCIVLEGDNRFTAPK-GVANRVCLGLIPTSE 976 (1057)
Q Consensus 935 ~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~Vil~~~P~~~ 976 (1057)
|+.|++..|+.+.|+|.++|+..+-+. ..+|+||.|| |+..
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-PYGe 311 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-PYGE 311 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-Ccch
Confidence 999999999999999999999988765 6789999999 8763
No 163
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.49 E-value=9.5e-07 Score=97.42 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=78.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC-
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI- 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~- 972 (1057)
.++.+|||++||+|.++..++...+..+|+++|+++.+++.++++. . ++.++.+|+..+.+...||+|+++..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~~~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASWQPPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhccCCCCCccEEEEccCh
Confidence 5688999999999999999985545568999999999999999874 2 57899999987766668999998752
Q ss_pred ---CCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 973 ---PTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 973 ---P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
+.....+..+.++|+ +||++.+..
T Consensus 104 ~~~~d~~~~l~~~~~~Lk-pgG~~~~~~ 130 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLA-PGGVLAVQM 130 (258)
T ss_pred hhCCCHHHHHHHHHHhcC-CCcEEEEEC
Confidence 233566888888888 799988864
No 164
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.49 E-value=2.1e-06 Score=96.38 Aligned_cols=131 Identities=12% Similarity=-0.002 Sum_probs=91.5
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC-
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL- 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~- 971 (1057)
..+|++|||++||+|++++.++ ..++..|+|+|.++.++..++...+.-+...++.++.+|+.+......||.|++.-
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~-~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRML-GHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHH-HcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcch
Confidence 3568899999999999999887 46777899999999998765443332222236888888888765545799998753
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEcccccchhH------HHHHH--------HHHHHHHHHHhcCCc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEK------LWAEH--------VSKSIYEIARSEGHR 1025 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~------~~~~~--------~~~~i~~~~~~~g~~ 1025 (1057)
.+.....+.+..++|+ +||.|++.+..-+.+.. ..... -...+...+++.|+.
T Consensus 198 L~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred hhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCe
Confidence 2344567888888888 69999887654322110 00010 134677888899985
No 165
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.8e-06 Score=83.72 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=89.4
Q ss_pred CCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPT 974 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~ 974 (1057)
-+.+++++||+|..+-.++...+ .....|.|+||+|++..++-|+.|++. +.+++.|....+..++.|+++.|| |+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNP-PY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNP-PY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECC-Cc
Confidence 67899999999999988874433 345889999999999999999999984 899999999988888899999999 65
Q ss_pred Ch--------hH-----------------HHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCcee
Q 036185 975 SE--------NS-----------------WVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWE 1027 (1057)
Q Consensus 975 ~~--------~~-----------------~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 1027 (1057)
-. .. +...+..+.++.|+++.-...... .++|.+..++.|+..+
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~---------p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK---------PKEILKILEKKGYGVR 189 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC---------HHHHHHHHhhccccee
Confidence 31 00 122222222478988888776654 2334445667776644
No 166
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.48 E-value=2.8e-07 Score=73.87 Aligned_cols=44 Identities=32% Similarity=0.785 Sum_probs=40.3
Q ss_pred CccccEEEEECCEEEEEccc--CCCCCCCCcEEEEECCCCcEEEee
Q 036185 343 PRLGHTSSLIGDHMFIIGGR--ADPLNILSDVWVFNMAKSKWTLLE 386 (1057)
Q Consensus 343 ~R~~hs~v~~~~~Iyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~ 386 (1057)
||.+|++++++++||||||+ .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 445678899999999999999997
No 167
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.47 E-value=1.9e-06 Score=90.34 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=71.6
Q ss_pred hhccCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc---------C
Q 036185 890 ARLDCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT---------A 959 (1057)
Q Consensus 890 ~~~~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~---------~ 959 (1057)
...+.+|++|||++||+|.++..++.+. +..+|+++|+||.. +.. ++.++++|+.+. .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCChhHHHHHHHHh
Confidence 3345789999999999999999887543 34579999999954 223 578888898653 2
Q ss_pred CCCCccEEEECCCCCC---------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 960 PKGVANRVCLGLIPTS---------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 960 ~~~~~D~Vil~~~P~~---------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+...+|+|+.+..|+. ...+..+.++|+ +||.+.+..+..
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~ 149 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQG 149 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccC
Confidence 3457999999864431 345777788887 799888865443
No 168
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.47 E-value=4.7e-07 Score=95.73 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=75.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
+++|++|||++||+||++-.+|...+. .+|+++|.+|..++.+++|++..++. ++.++.+|...-.+ ...||+|+++
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCcCEEEEe
Confidence 689999999999999999888855453 46999999999999999999999997 79999999987665 4579999998
Q ss_pred CCCCChhHHH-HHHHHhhCCCcEEEEEcc
Q 036185 971 LIPTSENSWV-TAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 971 ~~P~~~~~~~-~a~~~l~~~gg~l~~~~~ 998 (1057)
. . ....+ .-+..|+ +||+|.+=--
T Consensus 149 ~-a--~~~ip~~l~~qL~-~gGrLV~pi~ 173 (209)
T PF01135_consen 149 A-A--VPEIPEALLEQLK-PGGRLVAPIG 173 (209)
T ss_dssp S-B--BSS--HHHHHTEE-EEEEEEEEES
T ss_pred e-c--cchHHHHHHHhcC-CCcEEEEEEc
Confidence 6 2 22222 3344566 7998877433
No 169
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.9e-06 Score=97.34 Aligned_cols=110 Identities=25% Similarity=0.269 Sum_probs=89.5
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCC--CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCcc
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAK--ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVAN 965 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~--a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D 965 (1057)
...+|++||||+|+-|+=+.++|.... ...|+|+|+++.-++.+++|++.-|+. ++.+++.|+..+.. ..+||
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCc
Confidence 457899999999999999999986543 345799999999999999999999998 58999999876643 23599
Q ss_pred EEEECCCCCCh---------------------------hHHHHHHHHhhCCCcEEEEEcccccchh
Q 036185 966 RVCLGLIPTSE---------------------------NSWVTAVQALRSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 966 ~Vil~~~P~~~---------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~ 1004 (1057)
+|++|. |=+. ..+..|+++|+ +||.|.|.+|+-..++
T Consensus 232 ~iLlDa-PCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS~~~eE 295 (355)
T COG0144 232 RILLDA-PCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCSLTPEE 295 (355)
T ss_pred EEEECC-CCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccCCchhc
Confidence 999999 6331 11667777787 7999999999876543
No 170
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.5e-07 Score=102.44 Aligned_cols=106 Identities=23% Similarity=0.228 Sum_probs=93.9
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCcc
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVAN 965 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D 965 (1057)
...++-+|||.+|++|.-+|.+|+.. ++.+|+|.|.|+.||+..++|++.|++++.+++.++|+...+- ...||
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccc
Confidence 34567789999999999999999654 5678999999999999999999999999999999999987663 35799
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+|-+||..++..++..|++.++ .||+|.+-+.
T Consensus 186 vIDLDPyGs~s~FLDsAvqav~-~gGLL~vT~T 217 (525)
T KOG1253|consen 186 VIDLDPYGSPSPFLDSAVQAVR-DGGLLCVTCT 217 (525)
T ss_pred eEecCCCCCccHHHHHHHHHhh-cCCEEEEEec
Confidence 9999999999999999999999 7998877654
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.45 E-value=1.4e-06 Score=91.77 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=93.1
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-CCccccCCC---C
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-GDNRFTAPK---G 962 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~D~~~~~~~---~ 962 (1057)
+++....+.++||+++.++||=++.+|.... ..++++||.||+.++.|++|++.-|++++|+.+. +|+.+.+.. +
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~ 131 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDG 131 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCC
Confidence 3444456889999999999999999985444 3479999999999999999999999998899999 699888763 6
Q ss_pred CccEEEECCCC-CChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 963 VANRVCLGLIP-TSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 963 ~~D~Vil~~~P-~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.||.|++|-=+ ....++..+.++|+ +||+|++.-.-..
T Consensus 132 ~fDliFIDadK~~yp~~le~~~~lLr-~GGliv~DNvl~~ 170 (219)
T COG4122 132 SFDLVFIDADKADYPEYLERALPLLR-PGGLIVADNVLFG 170 (219)
T ss_pred CccEEEEeCChhhCHHHHHHHHHHhC-CCcEEEEeecccC
Confidence 89999998622 23677999999998 7999888776544
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.45 E-value=5.6e-07 Score=94.90 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=85.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-------CCCc
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-------KGVA 964 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-------~~~~ 964 (1057)
..+.++||++++|+||=++.+|.... ..+|+++|.||+.++.+++|++..|+.++|+++.+|+.++++ ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34678999999999999999994332 357999999999999999999999999899999999998775 1369
Q ss_pred cEEEECCCCCC-hhHHHHHHHHhhCCCcEEEEEccc
Q 036185 965 NRVCLGLIPTS-ENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 965 D~Vil~~~P~~-~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|.|++|--... ...+..++++|+ +||+|.+-..-
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~-~ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLR-PGGVIIADNVL 157 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEE-EEEEEEEETTT
T ss_pred eEEEEcccccchhhHHHHHhhhcc-CCeEEEEcccc
Confidence 99999983332 455788888887 69988877653
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.44 E-value=6.3e-07 Score=100.41 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=63.6
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc-CCCccEEEEe-CCccccC-----CCCCccEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN-SVSDHCIVLE-GDNRFTA-----PKGVANRV 967 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N-~~~~~v~~~~-~D~~~~~-----~~~~~D~V 967 (1057)
.+.+|||++||+|.+...++.+....+++|+|+++.|++.+++|++.| ++.++|.++. .|..... +...||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 467899999999988777664444457999999999999999999999 8988888864 4443322 24579999
Q ss_pred EECCCCCC
Q 036185 968 CLGLIPTS 975 (1057)
Q Consensus 968 il~~~P~~ 975 (1057)
++|| |..
T Consensus 194 vcNP-Pf~ 200 (321)
T PRK11727 194 LCNP-PFH 200 (321)
T ss_pred EeCC-CCc
Confidence 9999 765
No 174
>PLN02366 spermidine synthase
Probab=98.42 E-value=1.3e-05 Score=90.01 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc--CCC-ccEEEEeCCccccCC---CCCccEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN--SVS-DHCIVLEGDNRFTAP---KGVANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N--~~~-~~v~~~~~D~~~~~~---~~~~D~V 967 (1057)
.+.++||++++|.|..+..+++..+..+|+.||+++..++.+++....- +++ .+++++.+|++.++. ...||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999986555778999999999999999987542 233 489999999988874 4579999
Q ss_pred EECCCCC---------ChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 968 CLGLIPT---------SENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 968 il~~~P~---------~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
++|. +. ...++..+.+.|+ +||++....-
T Consensus 170 i~D~-~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDS-SDPVGPAQELFEKPFFESVARALR-PGGVVCTQAE 207 (308)
T ss_pred EEcC-CCCCCchhhhhHHHHHHHHHHhcC-CCcEEEECcC
Confidence 9986 33 2356777778887 7999876543
No 175
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.42 E-value=1.7e-06 Score=104.07 Aligned_cols=129 Identities=11% Similarity=0.047 Sum_probs=94.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~~ 971 (1057)
..++.+|||++||+|.+++.++...++ +|+|+|+++.+++.+++|+. +...+++++.+|+.... +...||+|+...
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 356889999999999999988854444 69999999999999999986 33447999999988754 356799998742
Q ss_pred ----CCCChhHHHHHHHHhhCCCcEEEEEcccccchh--HHHHHH---------HHHHHHHHHHhcCCc
Q 036185 972 ----IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEE--KLWAEH---------VSKSIYEIARSEGHR 1025 (1057)
Q Consensus 972 ----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~--~~~~~~---------~~~~i~~~~~~~g~~ 1025 (1057)
+|.....+..+.++|+ +||.|.+.+....... ..+... ..+.+.+++++.|+.
T Consensus 341 ~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~ 408 (475)
T PLN02336 341 TILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFD 408 (475)
T ss_pred cccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence 2344677888888998 7999998876543211 111111 123567777888875
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=1.4e-06 Score=108.96 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhC------------------------------------------CCcEEEEEecCHHH
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRA------------------------------------------KARLVYACEWNPCA 931 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~------------------------------------------~a~~V~avD~n~~a 931 (1057)
.+++.++|.|||+|+|.|.+|..+ ...+++|+|+++.|
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 568899999999999999998421 01269999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEECCCCCC
Q 036185 932 VEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLGLIPTS 975 (1057)
Q Consensus 932 i~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~~~P~~ 975 (1057)
++.+++|++.+|+.+.+++.++|+.++.. ...+|.||.|| |+.
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP-PYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNP-PYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECC-CCc
Confidence 99999999999998889999999988753 23599999999 874
No 177
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.41 E-value=5.3e-07 Score=72.27 Aligned_cols=45 Identities=47% Similarity=0.742 Sum_probs=41.1
Q ss_pred cccceEEEEECCEEEEEccc---CCCcccceEEEEECCCCcEEEeecC
Q 036185 394 PRHRHAAAVIGSKIYVFGGL---NNDTIFSSLHVLDTDTLQWKELLIN 438 (1057)
Q Consensus 394 ~R~~hsa~~~~~~iyv~GG~---~~~~~~~~v~~yD~~t~~W~~~~~~ 438 (1057)
||+.|++++++++||||||+ ......++++.||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 4567889999999999999999764
No 178
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.41 E-value=5.7e-07 Score=82.19 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=70.1
Q ss_pred EEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC----CC
Q 036185 900 VDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI----PT 974 (1057)
Q Consensus 900 lDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~----P~ 974 (1057)
||++||.|.++..++++ +...|+++|+++.+++.++++...++ +.++++|+.++.. ...||.|++.-. +.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeeccC
Confidence 79999999999999844 57789999999999999999876544 4489999988753 578999988642 23
Q ss_pred ChhHHHHHHHHhhCCCcEEEE
Q 036185 975 SENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 975 ~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
....+.++.++|+ +||++++
T Consensus 76 ~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEE-EEEEEEE
T ss_pred HHHHHHHHHHHcC-cCeEEeC
Confidence 3566888889998 6998875
No 179
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.40 E-value=5.5e-07 Score=71.41 Aligned_cols=45 Identities=44% Similarity=0.742 Sum_probs=41.6
Q ss_pred cccceEEEEECCEEEEEcccCC-CcccceEEEEECCCCcEEEeecC
Q 036185 394 PRHRHAAAVIGSKIYVFGGLNN-DTIFSSLHVLDTDTLQWKELLIN 438 (1057)
Q Consensus 394 ~R~~hsa~~~~~~iyv~GG~~~-~~~~~~v~~yD~~t~~W~~~~~~ 438 (1057)
||..|++++++++||++||.+. ...++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999998 78899999999999999999874
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.40 E-value=5.5e-07 Score=105.78 Aligned_cols=97 Identities=29% Similarity=0.327 Sum_probs=70.9
Q ss_pred CCEEEEecCcccHhHHHHHHh----CCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVR----AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~----~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
+.+|+|++||.|+++..+++. .++.+|+|||.||.|+..+++-++.|++.++|+++++|++++-...++|+||--+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 578999999999998776632 2367999999999999999998899999889999999999987667899999877
Q ss_pred CCCCh------hHHHHHHHHhhCCCcEE
Q 036185 972 IPTSE------NSWVTAVQALRSEGGTL 993 (1057)
Q Consensus 972 ~P~~~------~~~~~a~~~l~~~gg~l 993 (1057)
+.++- ..+..+-+.|+ ++|++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLk-p~Gi~ 293 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLK-PDGIM 293 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEE-EEEEE
T ss_pred cCCccccccCHHHHHHHHhhcC-CCCEE
Confidence 66541 22333334455 56754
No 181
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.40 E-value=1.6e-07 Score=95.88 Aligned_cols=79 Identities=28% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCccEEEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANRVCL 969 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~Vil 969 (1057)
..++|+|.|||.|+-++..| .....|++||++|.-|.++++|++.-|+.++|+|++||..+... +..+|.|++
T Consensus 94 ~~~~iidaf~g~gGntiqfa--~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFA--LQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHH--HhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 66899999999999999998 44557999999999999999999999999999999999988764 334679999
Q ss_pred CCCCCC
Q 036185 970 GLIPTS 975 (1057)
Q Consensus 970 ~~~P~~ 975 (1057)
.|+|..
T Consensus 172 sppwgg 177 (263)
T KOG2730|consen 172 SPPWGG 177 (263)
T ss_pred CCCCCC
Confidence 885543
No 182
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.4e-06 Score=88.69 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=79.4
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
.+++|++||+++||+||-+-.+|+. +.+|+++|..+.-.+.|++|++..|+. ||.++++|...-.+ ...||+|++.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVT 145 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEe
Confidence 4688999999999999999888843 348999999999999999999999998 59999999988776 4679999886
Q ss_pred CCCCChhHHHHH-HHHhhCCCcEEEEEcc
Q 036185 971 LIPTSENSWVTA-VQALRSEGGTLHVHGN 998 (1057)
Q Consensus 971 ~~P~~~~~~~~a-~~~l~~~gg~l~~~~~ 998 (1057)
- .....+.+ +..|+ +||.+.+=.-
T Consensus 146 a---aa~~vP~~Ll~QL~-~gGrlv~PvG 170 (209)
T COG2518 146 A---AAPEVPEALLDQLK-PGGRLVIPVG 170 (209)
T ss_pred e---ccCCCCHHHHHhcc-cCCEEEEEEc
Confidence 4 22223222 34566 6887766554
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=6e-07 Score=85.67 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
-.|+.++||+||.|-+++..+ ..++..|+++|++|+|+|.+.+|++.-.+. +.++++|..+..+ .+.||.+++||
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fDtaviNp- 122 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFDTAVINP- 122 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEeeEEecC-
Confidence 468999999999999998776 567889999999999999999999998884 6899999888765 56799999999
Q ss_pred CCC-------hhHHHHHHHHhh
Q 036185 973 PTS-------ENSWVTAVQALR 987 (1057)
Q Consensus 973 P~~-------~~~~~~a~~~l~ 987 (1057)
|.. ..+...|+.+.+
T Consensus 123 pFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 123 PFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred CCCcccccccHHHHHHHHHHHH
Confidence 754 345666666665
No 184
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.38 E-value=1.8e-05 Score=83.90 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=103.6
Q ss_pred EEEEEcccCCCCCCCCcEEEEECCCCc--------EEEeeccCCCCCcccceEEEEEC--CE--EEEEcccCC----C--
Q 036185 355 HMFIIGGRADPLNILSDVWVFNMAKSK--------WTLLECSGSVFQPRHRHAAAVIG--SK--IYVFGGLNN----D-- 416 (1057)
Q Consensus 355 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~R~~hsa~~~~--~~--iyv~GG~~~----~-- 416 (1057)
.-+|.||.+.+....+.+|+....... ..+-...|..|.+|++|+..++. ++ +++|||.+. .
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 466789998878888999998765432 33444568999999999998872 33 889999863 1
Q ss_pred --------cccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCC--CcccCcEEEEECCCCeEEEee
Q 036185 417 --------TIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNG--EKALGDLYTFDVHACLWKKED 486 (1057)
Q Consensus 417 --------~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~--~~~~~~l~~yd~~t~~W~~v~ 486 (1057)
.....++.+|++-+.++.... ..+....+.|.+..-++.+|++||..- +.....++++..+--.=+..-
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 123457899999888776643 345667888999999999999999743 233445666543211100000
Q ss_pred ccCCCCCCceeeEEEEE---CCEEEEEeccCCC
Q 036185 487 IAARSPHARFSHTMFLY---KNYLGLFGGCPVR 516 (1057)
Q Consensus 487 ~~~~~P~~R~~hs~~~~---~~~l~i~GG~~~~ 516 (1057)
+-..++....-.++.+. .+..+|+|||...
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 00012223322232222 4678899998654
No 185
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.37 E-value=1e-06 Score=98.15 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=68.3
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
+.++++|||++||.|.++..++. .+.+|+|+|+|+.+++.+++++..++..++++++++|+.+... ..+|.|+.|+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~--~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNl- 109 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQ--LAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANV- 109 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHH--hCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecC-
Confidence 46789999999999999999883 3567999999999999999999988765689999999987542 3589999998
Q ss_pred CCCh
Q 036185 973 PTSE 976 (1057)
Q Consensus 973 P~~~ 976 (1057)
|+..
T Consensus 110 PY~I 113 (294)
T PTZ00338 110 PYQI 113 (294)
T ss_pred Cccc
Confidence 7753
No 186
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.36 E-value=3.1e-06 Score=77.79 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=75.2
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECCCCCC
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGLIPTS 975 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~ 975 (1057)
+|+|++||.|.++..++. ....+++++|+++.+++.++++.+.++.. ++.++.+|..+... ...+|.|+++++-..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999883 46678999999999999999765555544 79999999988763 457999999983333
Q ss_pred -----hhHHHHHHHHhhCCCcEEEEE
Q 036185 976 -----ENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 976 -----~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
...+..+.+.++ +||++.+.
T Consensus 79 ~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 444666666776 68888765
No 187
>PRK10742 putative methyltransferase; Provisional
Probab=98.35 E-value=1.1e-06 Score=93.58 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=69.4
Q ss_pred cCCCC--EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc------C--CCccEEEEeCCccccCC--
Q 036185 893 DCKDE--VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN------S--VSDHCIVLEGDNRFTAP-- 960 (1057)
Q Consensus 893 ~~~g~--~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N------~--~~~~v~~~~~D~~~~~~-- 960 (1057)
+++|. +|||+|||.|.-|+.+| ..|++ |+++|.||.+...+++|++.- + +..+++++++|+.+++.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~la-s~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~ 161 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLA-SVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHH-HcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC
Confidence 35777 89999999999999998 67887 999999999999999999884 2 32479999999999986
Q ss_pred CCCccEEEECCCCCCh
Q 036185 961 KGVANRVCLGLIPTSE 976 (1057)
Q Consensus 961 ~~~~D~Vil~~~P~~~ 976 (1057)
...||+|++|| |++.
T Consensus 162 ~~~fDVVYlDP-Mfp~ 176 (250)
T PRK10742 162 TPRPQVVYLDP-MFPH 176 (250)
T ss_pred CCCCcEEEECC-CCCC
Confidence 34699999999 7764
No 188
>PRK06922 hypothetical protein; Provisional
Probab=98.35 E-value=2.9e-06 Score=101.66 Aligned_cols=102 Identities=20% Similarity=0.287 Sum_probs=79.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEEEC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVCLG 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vil~ 970 (1057)
.++.+|||++||+|.++..++.......|+|+|+++.+++.+++++..++. ++.++++|+.++. +...||.|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEc
Confidence 367899999999999998887444456899999999999999999877664 5889999987753 34679999987
Q ss_pred CC--------C---------CChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 971 LI--------P---------TSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 971 ~~--------P---------~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
++ | .....+..+.++|+ +||.+.+.+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D~ 538 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRDG 538 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 41 1 11345777778888 7998888764
No 189
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.35 E-value=4.9e-07 Score=72.42 Aligned_cols=48 Identities=33% Similarity=0.524 Sum_probs=30.4
Q ss_pred cccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCC
Q 036185 286 FLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSP 341 (1057)
Q Consensus 286 ~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P 341 (1057)
+|++|+++.+++. +||||||.+.. ...++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~----~i~v~GG~~~~--~~~~~d~~~~d~~~~~W~~~~--~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDN----SIYVFGGRDSS--GSPLNDLWIFDIETNTWTRLP--SMP 48 (49)
T ss_dssp --BS-EEEEE-TT----EEEEE--EEE---TEE---EEEEETTTTEEEE----SS-
T ss_pred CcceEEEEEEeCC----eEEEECCCCCC--CcccCCEEEEECCCCEEEECC--CCC
Confidence 5999999999644 69999999874 368999999999999999985 454
No 190
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.34 E-value=3.5e-06 Score=91.44 Aligned_cols=106 Identities=15% Similarity=0.246 Sum_probs=83.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
.++.+|||++||.|.+++.++...+ ..+|+++|+++.+++.+++++..+++..++.++.+|+.+... ...+|+|+++.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 4578999999999999999984433 368999999999999999999887776679999999987643 45799998753
Q ss_pred ----CCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 ----IPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.+.....+..+.++|+ +||.+.+.+...
T Consensus 130 ~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNVPDIDKALREMYRVLK-PGGRLVILEFSK 161 (239)
T ss_pred ccccCCCHHHHHHHHHHhcc-CCcEEEEEEecC
Confidence 2334566777777787 789887766533
No 191
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.34 E-value=9e-06 Score=87.21 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
.++.+|||++||.|.++..+++.... .+++++|+++.+++.++++.. ...++.++.+|+.+... ...+|+|++..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 36889999999999999998844332 479999999999999999876 33468999999988643 45799998753
Q ss_pred ----CCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 972 ----IPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 972 ----~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.+.....+..+.+.|+ +||++.+.+..
T Consensus 115 ~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 145 (223)
T TIGR01934 115 GLRNVTDIQKALREMYRVLK-PGGRLVILEFS 145 (223)
T ss_pred eeCCcccHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 2444566777888887 79998876654
No 192
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.34 E-value=9.7e-06 Score=89.91 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=81.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc-C-C-CccEEEEeCCccccCC--CCCccEEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN-S-V-SDHCIVLEGDNRFTAP--KGVANRVC 968 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N-~-~-~~~v~~~~~D~~~~~~--~~~~D~Vi 968 (1057)
.+.++||+++||.|.++..+++...+.+|+++|+++..++.+++++... + + ..+++++.+|+++++. ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999988875444678999999999999999987543 2 2 2478899999988764 45799999
Q ss_pred ECCCCC---------ChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 969 LGLIPT---------SENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 969 l~~~P~---------~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|+ +. ...++..+.+.|+ +||++.+.....
T Consensus 151 ~D~-~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~~~~ 189 (270)
T TIGR00417 151 VDS-TDPVGPAETLFTKEFYELLKKALN-EDGIFVAQSESP 189 (270)
T ss_pred EeC-CCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcCCCc
Confidence 987 32 2355667777887 799998875543
No 193
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.32 E-value=4.3e-06 Score=89.09 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=70.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC--------------CccEEEEeCCccccC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV--------------SDHCIVLEGDNRFTA 959 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~--------------~~~v~~~~~D~~~~~ 959 (1057)
.++.+|||++||.|.-++.+| .+|. .|+|+|++|.|++.+.. .+++ ..+|+++++|++++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA-~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLA-EQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHH-hCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 467899999999999999998 4454 69999999999998643 2222 135899999998865
Q ss_pred C--CCCccEEE-----ECCCCCC-hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 960 P--KGVANRVC-----LGLIPTS-ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 960 ~--~~~~D~Vi-----l~~~P~~-~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
. ...||.|+ +.++|.. ...+....++|+ +||++++.++..
T Consensus 108 ~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~~ 155 (213)
T TIGR03840 108 AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLDY 155 (213)
T ss_pred cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEc
Confidence 3 23456543 2332222 234566666776 799877777754
No 194
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.31 E-value=3.4e-06 Score=87.44 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=72.9
Q ss_pred HhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEE
Q 036185 889 MARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVC 968 (1057)
Q Consensus 889 ~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vi 968 (1057)
.+..+. ..++||+.||.|--|+.+| +.|. .|+|+|+|+.|++.+++-++.++++ |.....|..+......+|.|+
T Consensus 25 a~~~~~-~g~~LDlgcG~GRNalyLA-~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 25 AVPLLK-PGKALDLGCGEGRNALYLA-SQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp HCTTS--SSEEEEES-TTSHHHHHHH-HTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEE
T ss_pred HHhhcC-CCcEEEcCCCCcHHHHHHH-HCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEE
Confidence 333444 5689999999999999998 5566 5999999999999999999999996 899999988776566799987
Q ss_pred EC----CCC-CChhHHHHHH-HHhhCCCcEEEEEcccc
Q 036185 969 LG----LIP-TSENSWVTAV-QALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 969 l~----~~P-~~~~~~~~a~-~~l~~~gg~l~~~~~~~ 1000 (1057)
.. .++ ...+.+...+ ..++ +||++.+.++..
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~~~ 136 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTFME 136 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEEB-
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEecc
Confidence 52 112 1122222333 3344 799988876654
No 195
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.31 E-value=2.7e-06 Score=91.52 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=85.2
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
..|+.|||++||+|.++..+| .+||++|||||-+. +.+++++=++-|++.++|.+|.|.+.+.--.+++|++|-.|..
T Consensus 176 F~~kiVlDVGaGSGILS~FAa-qAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAA-QAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHH-HhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 468999999999999999987 78999999999875 6789999999999999999999999987656789999987754
Q ss_pred CC------hhHHHHHHHHhhCCC------cEEEEEccccc
Q 036185 974 TS------ENSWVTAVQALRSEG------GTLHVHGNVKD 1001 (1057)
Q Consensus 974 ~~------~~~~~~a~~~l~~~g------g~l~~~~~~~~ 1001 (1057)
+- .+....|.+.|+|.| |-||+--|+.+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchH
Confidence 42 123445667777655 45777666543
No 196
>PLN03075 nicotianamine synthase; Provisional
Probab=98.30 E-value=4.6e-06 Score=91.94 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=80.3
Q ss_pred CCCEEEEecCcccHhH-HHHHHh-CCCcEEEEEecCHHHHHHHHHHHHH-cCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 895 KDEVIVDLFAGIGYFV-LPFLVR-AKARLVYACEWNPCAVEALKHNLQA-NSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fs-l~~a~~-~~a~~V~avD~n~~ai~~~~~N~~~-N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
..++|+|++||-|+++ +.+++. ....+++++|++|+|++.++++++. .++.++++|..+|+.+... ...||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999977664 444422 2345799999999999999999965 7888889999999998754 3579999998
Q ss_pred CC-----CCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 971 LI-----PTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 971 ~~-----P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
-+ +...+.+....+.|+ +||+|.+=.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence 43 334566777777887 799988876
No 197
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.30 E-value=4.2e-06 Score=91.89 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=76.8
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC-
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI- 972 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~- 972 (1057)
++.+|||++||+|.++..++ ..+ .+|+++|+++.+++.++++.. .+.++++|+..... ...||.|+.+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~-~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR-ERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAV 113 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH-HcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchh
Confidence 46799999999999998887 344 579999999999999988742 24578899877543 457999998762
Q ss_pred ---CCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 973 ---PTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 973 ---P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
+.....+.++.++|+ +||++.+..+.+.
T Consensus 114 ~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~ 144 (251)
T PRK10258 114 QWCGNLSTALRELYRVVR-PGGVVAFTTLVQG 144 (251)
T ss_pred hhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence 233566888888888 7999999887653
No 198
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.29 E-value=9.4e-07 Score=82.54 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=65.4
Q ss_pred EEEecCcccHhHHHHHHhC--C-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEE-CC-C
Q 036185 899 IVDLFAGIGYFVLPFLVRA--K-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCL-GL-I 972 (1057)
Q Consensus 899 VlDlf~G~G~fsl~~a~~~--~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil-~~-~ 972 (1057)
|||++||+|..+..++... + ..+++++|+++++++.++++.+..+. +++++++|+.++.. ..+||.|++ +. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999988443 2 26899999999999999999998777 58999999988653 568999999 44 2
Q ss_pred CCC-----hhHHHHHHHHhhCCCc
Q 036185 973 PTS-----ENSWVTAVQALRSEGG 991 (1057)
Q Consensus 973 P~~-----~~~~~~a~~~l~~~gg 991 (1057)
.+. ...+....++++ +||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCC
Confidence 333 223444555555 454
No 199
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.27 E-value=7.6e-06 Score=88.49 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=61.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
.++.+|||++||+|.++..++ ..+. .|+++|+++.+++.+++++..+++.+++.++.+|... . ...||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~-~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLA-RRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-L-LGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHH-HcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-c-cCCcCEEEEcc
Confidence 457899999999999999988 3455 5999999999999999999988886679999999432 2 35699998753
No 200
>PF13854 Kelch_5: Kelch motif
Probab=98.26 E-value=1.7e-06 Score=66.82 Aligned_cols=41 Identities=29% Similarity=0.718 Sum_probs=36.8
Q ss_pred CCCCccccEEEEECCEEEEEcccCC-CCCCCCcEEEEECCCC
Q 036185 340 SPSPRLGHTSSLIGDHMFIIGGRAD-PLNILSDVWVFNMAKS 380 (1057)
Q Consensus 340 ~P~~R~~hs~v~~~~~Iyv~GG~~~-~~~~~~~v~~yd~~t~ 380 (1057)
.|.+|.+|++++++++||||||... ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4899999999999999999999984 6688999999998763
No 201
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=5.3e-06 Score=88.69 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC--------------CccEEEEeCCccccC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV--------------SDHCIVLEGDNRFTA 959 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~--------------~~~v~~~~~D~~~~~ 959 (1057)
.++.+|||++||.|.-++.+| ..|. .|+|||++|.|++.+.. .+++ ..+|.++++|++++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA-~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLA-EQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHH-hCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 457899999999999999998 4454 69999999999998642 2332 246899999999875
Q ss_pred CC--CCccEEE-----ECCCCCC-hhHHHHHHHHhhCCCcEEEE
Q 036185 960 PK--GVANRVC-----LGLIPTS-ENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 960 ~~--~~~D~Vi-----l~~~P~~-~~~~~~a~~~l~~~gg~l~~ 995 (1057)
+. ..||.|+ +-++|.. ...+....++|+ +||++++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l 153 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLL 153 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEE
Confidence 42 3567665 3332322 344666667777 6875444
No 202
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.24 E-value=5.6e-06 Score=96.10 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=78.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
+.+|.+|||++||+|.+++.+++..++ +|+++|+++++++.++++++ ++ ++++..+|..+. ...||.|+....
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~ 237 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGM 237 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCc
Confidence 468899999999999999999854455 79999999999999999984 44 378888998765 357999986431
Q ss_pred -CC-----ChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 973 -PT-----SENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 973 -P~-----~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.+ ....+..+.++|+ +||++.++.+..
T Consensus 238 ~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~ 270 (383)
T PRK11705 238 FEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGS 270 (383)
T ss_pred hhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccC
Confidence 11 1355777778887 799999887654
No 203
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.23 E-value=1.7e-05 Score=89.19 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC----CccEEEEeCCccccCCCCCccEEEEC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV----SDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~----~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
++.+|||++||+|.+++.++ ..+ .+|+|+|+++.+++.+++|++.... ..++.+..+|..+. ...||.|++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la-~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLA-LEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHH-HCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 57899999999999999998 344 4799999999999999999886521 12578889998654 3579998764
No 204
>PRK08317 hypothetical protein; Provisional
Probab=98.22 E-value=1.5e-05 Score=86.34 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=79.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~ 970 (1057)
+.++.+|||++||+|.++..++... ...+|+++|+++.+++.++++.... ..++.++.+|+.... +...||.|++.
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEe
Confidence 4678899999999999999988544 2457999999999999999984322 236899999987643 34579999885
Q ss_pred CC----CCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 971 LI----PTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 971 ~~----P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
.. +.....+....++|+ +||.|.+.+.
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 125 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLR-PGGRVVVLDT 125 (241)
T ss_pred chhhccCCHHHHHHHHHHHhc-CCcEEEEEec
Confidence 32 444667888888888 6998887664
No 205
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.21 E-value=6.5e-06 Score=89.19 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=83.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC--------CC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK--------GV 963 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~--------~~ 963 (1057)
..+-++||++++++||=++.+|...+ ..+|+++|.+|+.++.|++|++..|+.++|+++.||+.+.++. ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34567999999999999999884322 3479999999999999999999999999999999999998752 57
Q ss_pred ccEEEECCCCCC-hhHHHHHHHHhhCCCcEEEE
Q 036185 964 ANRVCLGLIPTS-ENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 964 ~D~Vil~~~P~~-~~~~~~a~~~l~~~gg~l~~ 995 (1057)
||.|++|--... ...+..++++|+ +||+|.+
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~-~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVK-VGGVIGY 188 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcC-CCeEEEE
Confidence 999999973222 455777788887 6998765
No 206
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.21 E-value=5.3e-06 Score=92.32 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=89.4
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRV 967 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~V 967 (1057)
...+|+.|||++|+-|+-+.++|...+ -..|+|+|+++.-++.+++|++..|+. ++.++..|+....+ ...||+|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchh
Confidence 357899999999999999999986655 458999999999999999999999998 68888899888743 4469999
Q ss_pred EECCCCCCh---------------------------hHHHHHHHHh----hCCCcEEEEEcccccchh
Q 036185 968 CLGLIPTSE---------------------------NSWVTAVQAL----RSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 968 il~~~P~~~---------------------------~~~~~a~~~l----~~~gg~l~~~~~~~~~~~ 1004 (1057)
++|. |=+. ..+..|++.+ + +||.|.|.+|+=..++
T Consensus 161 lvDa-PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 161 LVDA-PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCSLSPEE 226 (283)
T ss_dssp EEEC-SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESHHHGGG
T ss_pred hcCC-CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEeccHHHHH
Confidence 9999 7331 1166777777 7 7999999999865433
No 207
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.20 E-value=9.6e-06 Score=87.34 Aligned_cols=101 Identities=18% Similarity=0.090 Sum_probs=80.3
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC--CCccEEEECC-
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK--GVANRVCLGL- 971 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~--~~~D~Vil~~- 971 (1057)
.+.+|||++||+|.++..++ ..++ .|+++|+++.+++.+++++..+++. ++.+..+|+.+.... ..||.|+++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~-~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA-RLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH-hcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 47899999999999999887 3444 5999999999999999999988875 588999998876542 5799998752
Q ss_pred ---CCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 972 ---IPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 972 ---~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.+.....+..+.+.|+ +||.+.+..+.
T Consensus 122 l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred HHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 2334556777777887 68988877653
No 208
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.20 E-value=1.1e-05 Score=85.61 Aligned_cols=101 Identities=19% Similarity=0.089 Sum_probs=71.0
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
...++.+|||++||+|.++..++...+...|+|+|+|+.+++.+++++ . ++.++++|+.+..+...||.|+++.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFDPFKDNFFDLVLTKG 113 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccCCCCCCCEEEEEECC
Confidence 356788999999999999999875434567999999999999999874 2 3667889988744566899999865
Q ss_pred CC-CC-hhHHHHHHHHhh-CCCcEEEEEcc
Q 036185 972 IP-TS-ENSWVTAVQALR-SEGGTLHVHGN 998 (1057)
Q Consensus 972 ~P-~~-~~~~~~a~~~l~-~~gg~l~~~~~ 998 (1057)
.- +. ...+..+++.+. ..++.+.+.++
T Consensus 114 vL~hl~p~~~~~~l~el~r~~~~~v~i~e~ 143 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCSNRYILIAEY 143 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhcCcEEEEEEe
Confidence 22 11 123334443332 22556666655
No 209
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.6e-05 Score=82.62 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=101.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vi 968 (1057)
+.+|.+|++-+.|+|.++..+|+.-+ -.+++..|....-.+.+++-.+..++.+++.++.-|+...- ...++|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 57999999999999999999884433 35899999999999999999999999999999999976532 245799999
Q ss_pred ECCCCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeee
Q 036185 969 LGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTI 1030 (1057)
Q Consensus 969 l~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 1030 (1057)
||+ |.+...++-|..+|+..|| .+.+|++-.|. +++-.+++++.|+. +++.
T Consensus 183 LDl-PaPw~AiPha~~~lk~~g~--r~csFSPCIEQ-------vqrtce~l~~~gf~-~i~~ 233 (314)
T KOG2915|consen 183 LDL-PAPWEAIPHAAKILKDEGG--RLCSFSPCIEQ-------VQRTCEALRSLGFI-EIET 233 (314)
T ss_pred EcC-CChhhhhhhhHHHhhhcCc--eEEeccHHHHH-------HHHHHHHHHhCCCc-eEEE
Confidence 999 9999999999998885555 55666664432 55666777888873 4443
No 210
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.18 E-value=4.3e-06 Score=88.37 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCc-----cEEEEeCCccccCCCCCccEEEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSD-----HCIVLEGDNRFTAPKGVANRVCL 969 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~-----~v~~~~~D~~~~~~~~~~D~Vil 969 (1057)
.|..|||++||.|-++.++| +.|| .|+|||+++++|+.|++.++.+-+.+ ++++.+.|+.... ++||.|++
T Consensus 89 ~g~~ilDvGCGgGLLSepLA-rlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvc 164 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLA-RLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVC 164 (282)
T ss_pred CCceEEEeccCccccchhhH-hhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeee
Confidence 36789999999999999999 4564 69999999999999999976664432 4778888888874 35999987
Q ss_pred CCCC-C---ChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 970 GLIP-T---SENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 970 ~~~P-~---~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
--.- | ...++....+.|+ |||.|.+.+..+.
T Consensus 165 sevleHV~dp~~~l~~l~~~lk-P~G~lfittinrt 199 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINRT 199 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhhh
Confidence 4211 1 1344444445555 7999999887653
No 211
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.17 E-value=5.6e-06 Score=91.44 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=68.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~~ 971 (1057)
-++++|||++||+|.+++.+| ++||++|+|||-+.-| +.+++.++.|++++.|++++|.+.++. |.++.|+||---
T Consensus 59 f~dK~VlDVGcGtGILS~F~a-kAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAA-KAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHH-HhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 478999999999999999998 6899999999999888 999999999999988999999999874 457889998543
No 212
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.16 E-value=5.7e-06 Score=91.10 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=64.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLI 972 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~ 972 (1057)
..++++|||++||+|.+++.++.+ +.+|+|+|+++.+++.+++++.. . ++++++++|+.++.. ..+|.|+.|+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~-~~~d~Vv~Nl- 99 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL-PEFNKVVSNL- 99 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-hhceEEEEcC-
Confidence 457899999999999999999843 55799999999999999998854 3 379999999988542 3479999998
Q ss_pred CCCh
Q 036185 973 PTSE 976 (1057)
Q Consensus 973 P~~~ 976 (1057)
|+..
T Consensus 100 Py~i 103 (258)
T PRK14896 100 PYQI 103 (258)
T ss_pred Cccc
Confidence 7653
No 213
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.16 E-value=1.5e-05 Score=81.79 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=87.1
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTS 975 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~ 975 (1057)
-..++|++||+|.|+..+| ..+.+++|+|+++.|++.+++.+. +.. +|+++++|+.++.+.+.||+|++.=+-+.
T Consensus 44 y~~alEvGCs~G~lT~~LA--~rCd~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLA--PRCDRLLAVDISPRALARARERLA--GLP-HVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHG--GGEEEEEEEES-HHHHHHHHHHTT--T-S-SEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHH--HhhCceEEEeCCHHHHHHHHHhcC--CCC-CeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 3579999999999999998 567899999999999999999764 455 79999999999988889999998643332
Q ss_pred ---hhH----HHHHHHHhhCCCcEEEEEcccccchhHHHHHHH--HHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEE
Q 036185 976 ---ENS----WVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHV--SKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHL 1046 (1057)
Q Consensus 976 ---~~~----~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~ 1046 (1057)
... +......|. +||.|++-++.... -..| .+. .+.|.+++.+.= . +|+. ..++--+|+.+-+
T Consensus 119 L~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~-c~~w-gh~~ga~tv~~~~~~~~--~--~~~~-~~~~~~~~~~~~~ 190 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALA-PGGHLVFGHARDAN-CRRW-GHAAGAETVLEMLQEHL--T--EVER-VECRGGSPNEDCL 190 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHH-HHHT-T-S--HHHHHHHHHHHS--E--EEEE-EEEE-SSTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCc-cccc-CcccchHHHHHHHHHHh--h--heeE-EEEcCCCCCCceE
Confidence 222 333344455 79999887775421 1111 111 123444443321 1 2322 3366778888776
Q ss_pred EEEEE
Q 036185 1047 VADVG 1051 (1057)
Q Consensus 1047 ~~d~~ 1051 (1057)
.+-|+
T Consensus 191 ~~~~~ 195 (201)
T PF05401_consen 191 LARFR 195 (201)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 66554
No 214
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=1.6e-05 Score=83.54 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=80.2
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEEECCC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVCLGLI 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vil~~~ 972 (1057)
..+||++||.|.|.+.+|....-..++|+|+....+..+.+.+...+++ |+.++++|+..++. ....|.|.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~F- 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINF- 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeC-
Confidence 3899999999999999997666678999999999999999999999997 79999999998653 46789998876
Q ss_pred CCC-------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 973 PTS-------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 973 P~~-------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.+ ..++....+.|+ +||.|++-+...
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD~~ 136 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATDVE 136 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES-H
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeCCH
Confidence 544 344777777787 799998887764
No 215
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=4.5e-06 Score=84.32 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
-.|++|||+++|+|--+|.++ +.||+.|++.|+.|+.+..++.|++.|++. +.+...|.-- ....+|+|+++.+=
T Consensus 78 VrgkrVLd~gagsgLvaIAaa-~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAA-RAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHH-HhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CCcceeEEEeecee
Confidence 468999999999999999887 789999999999999999999999999985 8889988776 45679999987654
Q ss_pred CCh---hHHHHHHHHhhCCCcEEEEEccc
Q 036185 974 TSE---NSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 974 ~~~---~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+.. ..+..-+..+...|-.+.+-+-.
T Consensus 153 y~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 153 YNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred cCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 433 22344555565445555544433
No 216
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.15 E-value=9.4e-06 Score=97.73 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=81.9
Q ss_pred CCHHHHHHHhhcc--CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc
Q 036185 881 GNLSEKLRMARLD--CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT 958 (1057)
Q Consensus 881 ~~~~er~r~~~~~--~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~ 958 (1057)
.+..++..++..+ .++.+|||++||+|.++..++. ...+|+|+|+++.+++.+++ .++...++.++++|+...
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~--~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAK--KAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSP 95 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHh--hCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEeccccc
Confidence 3555556666654 3577999999999999999983 35689999999999986543 444444799999998642
Q ss_pred ---CCCCCccEEEECCCCC------ChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 959 ---APKGVANRVCLGLIPT------SENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 959 ---~~~~~~D~Vil~~~P~------~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
++...||.|+++..-+ ....+....+.|+ +||++.++++.
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~~ 144 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRESC 144 (475)
T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEecc
Confidence 2356799999886221 1345667777787 79999887654
No 217
>PF13854 Kelch_5: Kelch motif
Probab=98.12 E-value=4.9e-06 Score=64.28 Aligned_cols=40 Identities=35% Similarity=0.718 Sum_probs=36.1
Q ss_pred CCCCcceeEEEEECCEEEEEecCC--CCcccCcEEEEECCCC
Q 036185 441 GPCARHSHSMLAYGSRLYMFGGYN--GEKALGDLYTFDVHAC 480 (1057)
Q Consensus 441 ~P~~r~~~s~~~~~~~lyv~GG~~--~~~~~~~l~~yd~~t~ 480 (1057)
+|.+|.+|+++.++++||||||.+ ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 4778999999998763
No 218
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.12 E-value=8.4e-05 Score=83.79 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=74.8
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCC-
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGV- 963 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~- 963 (1057)
+++..+.++.+|||++||+|.++.+++.... ..+|+++|+++++++.+++++....-.-++.++++|..+.++ ...
T Consensus 56 ~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 56 EIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred HHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc
Confidence 3555566788999999999999999984322 357999999999999999998764322258889999887532 211
Q ss_pred -ccE--EEECC-CCCC-----hhHHHHHHHHhhCCCcEEEEEcc
Q 036185 964 -ANR--VCLGL-IPTS-----ENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 964 -~D~--Vil~~-~P~~-----~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
.+. ++++. +... ...+....+.|+ +||.+.+--.
T Consensus 136 ~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~lig~d 178 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLIGVD 178 (301)
T ss_pred cCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEEecc
Confidence 133 33332 1111 344677777777 6887765443
No 219
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.12 E-value=1.7e-05 Score=85.96 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=79.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC--CCCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA--PKGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~--~~~~~D~Vil~~ 971 (1057)
.++.+|||++||.|.+++.++ +.++ .|+++|+++.+++.+++|+..++. ++.++.+|..+.. ....||+|++..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~-~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMA-RLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHH-HcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 467899999999999999887 3444 699999999999999999988876 4788888887765 346799998743
Q ss_pred ----CCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 972 ----IPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 972 ----~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.+.....+..+.+.|+ +||.+.+....
T Consensus 123 ~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 123 MLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred HhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 2344555777777777 78988876553
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.11 E-value=4.7e-06 Score=94.58 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=76.6
Q ss_pred EeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHh-------CCCcEEEEEecCHHHHHHHHHHHHHcCCCcc-E
Q 036185 877 MFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVR-------AKARLVYACEWNPCAVEALKHNLQANSVSDH-C 948 (1057)
Q Consensus 877 ~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~-------~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~-v 948 (1057)
||.|....+-+.-+....++++|+|.+||+|.|-+++... .....++|+|+++.++..++.|+.++++... .
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 4556555443222223467889999999999999888742 2456799999999999999999999887532 4
Q ss_pred EEEeCCccccCC---CCCccEEEECCCCCChh--------------------------HHHHHHHHhhCCCcEEEEE
Q 036185 949 IVLEGDNRFTAP---KGVANRVCLGLIPTSEN--------------------------SWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 949 ~~~~~D~~~~~~---~~~~D~Vil~~~P~~~~--------------------------~~~~a~~~l~~~gg~l~~~ 996 (1057)
.+..+|...... ...||.|++|| |.... ++..++..|+ +||.+.+-
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NP-Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~I 182 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNP-PFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAII 182 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE---CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred cccccccccccccccccccccccCCC-CccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEE
Confidence 588999765443 35799999999 75422 3566777887 57764443
No 221
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.10 E-value=1.4e-05 Score=86.69 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEEEECCCC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRVCLGLIP 973 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~Vil~~~P 973 (1057)
.+.+|||++||+|.++..++......+|+++|+++.+++.+++++. .++.++.+|..+.. +...||+|+.+..-
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 4568999999999999998854334569999999999999988654 26889999988765 35679999987522
Q ss_pred ----CChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 974 ----TSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 974 ----~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.....+..+.++|+ +||++.+.++...
T Consensus 109 ~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~ 139 (240)
T TIGR02072 109 QWCDDLSQALSELARVLK-PGGLLAFSTFGPG 139 (240)
T ss_pred hhccCHHHHHHHHHHHcC-CCcEEEEEeCCcc
Confidence 33566777778887 7999998876553
No 222
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.08 E-value=2e-05 Score=88.32 Aligned_cols=110 Identities=26% Similarity=0.275 Sum_probs=90.1
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRV 967 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~V 967 (1057)
..++|++||||+|--|+=+.++|+..+ -..|+|.|.|..-++.++.|+..-|+. +.++.+.|..++.. ...||+|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCccccee
Confidence 357899999999999999888875433 457999999999999999999999998 68899999987653 2379999
Q ss_pred EECCCCCCh---------------------------hHHHHHHHHhhCCCcEEEEEcccccchh
Q 036185 968 CLGLIPTSE---------------------------NSWVTAVQALRSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 968 il~~~P~~~---------------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~ 1004 (1057)
+||- |-+. +.+..|+.+++ +||+|+|++|+-..++
T Consensus 317 LLDA-PCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 317 LLDA-PCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCSITVEE 378 (460)
T ss_pred eecC-CCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeeecchhh
Confidence 9998 6432 22777888888 6999999999865543
No 223
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.07 E-value=7.5e-06 Score=90.86 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=62.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCC-ccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGV-ANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~-~D~Vil~~ 971 (1057)
..++++|||++||+|.++..++. .+. +|+|+|+++.+++.+++|+.. ++++++++|+.++..... +|.||.||
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~-~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLE-RAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHH-hCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcceEEEeC
Confidence 45788999999999999999984 344 799999999999999998742 479999999988643222 58999998
Q ss_pred CCCCh
Q 036185 972 IPTSE 976 (1057)
Q Consensus 972 ~P~~~ 976 (1057)
|+..
T Consensus 114 -PY~i 117 (272)
T PRK00274 114 -PYNI 117 (272)
T ss_pred -Cccc
Confidence 7654
No 224
>smart00612 Kelch Kelch domain.
Probab=98.05 E-value=4.8e-06 Score=65.55 Aligned_cols=47 Identities=34% Similarity=0.572 Sum_probs=41.3
Q ss_pred EEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC
Q 036185 355 HMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS 405 (1057)
Q Consensus 355 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~ 405 (1057)
+||++||... ...++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999865 467899999999999999987 8999999999998764
No 225
>PLN02823 spermine synthase
Probab=98.05 E-value=3.9e-05 Score=87.03 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=81.3
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC--C-CccEEEEeCCccccCC--CCCccEEEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS--V-SDHCIVLEGDNRFTAP--KGVANRVCL 969 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~--~-~~~v~~~~~D~~~~~~--~~~~D~Vil 969 (1057)
+.++||.+++|.|..+..+++..+..+|++||++|..++.+++....++ + +.+++++.+|++.++. ..+||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988854567889999999999999999987654 2 3589999999999986 457999999
Q ss_pred CCCCC-----------ChhHHH-HHHHHhhCCCcEEEEEcc
Q 036185 970 GLIPT-----------SENSWV-TAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 970 ~~~P~-----------~~~~~~-~a~~~l~~~gg~l~~~~~ 998 (1057)
|. +. ...++. ...+.|+ +||++.+..-
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~~ 221 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQAG 221 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEecc
Confidence 95 22 234565 5667777 7999877543
No 226
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.03 E-value=2.5e-05 Score=80.58 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=63.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC--CCccEEEEeCCccc-----cCCCCCcc
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS--VSDHCIVLEGDNRF-----TAPKGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~--~~~~v~~~~~D~~~-----~~~~~~~D 965 (1057)
..++.+||+|+||+|..|+.+|+..++.+|++-|.++ +++.+++|++.|+ ...++.+..-|=.+ .+....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4678999999999999999998544778899999999 9999999999998 55567776665222 22345799
Q ss_pred EEEECCCCCC---hhHHHHHHHHh-hCCCcEEEEEccc
Q 036185 966 RVCLGLIPTS---ENSWVTAVQAL-RSEGGTLHVHGNV 999 (1057)
Q Consensus 966 ~Vil~~~P~~---~~~~~~a~~~l-~~~gg~l~~~~~~ 999 (1057)
+|+..-+-+. ...+..++..+ .+.+.++..|...
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9987644443 33344555444 4445555555544
No 227
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.99 E-value=0.0015 Score=70.69 Aligned_cols=200 Identities=16% Similarity=0.198 Sum_probs=116.5
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCC-cccc-EEEEE----CC-EEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCC
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSP-RLGH-TSSLI----GD-HMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVF 392 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~-R~~h-s~v~~----~~-~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p 392 (1057)
..++++||.|++|..++.++.+.. ...+ ....+ ++ +|..+..... ......+++|+..+++|+.+... .+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCccccccC--CC
Confidence 468999999999999974322211 1111 11112 22 4555544321 12345789999999999998722 22
Q ss_pred CcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEE-eecCCCCCCCc----ceeEEEEECCEEEEEecCCCCc
Q 036185 393 QPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKE-LLINGEGPCAR----HSHSMLAYGSRLYMFGGYNGEK 467 (1057)
Q Consensus 393 ~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~-~~~~g~~P~~r----~~~s~~~~~~~lyv~GG~~~~~ 467 (1057)
........+.+++.+|-+.-.........+..||+.+.+|+. ++. |..+ .....+.++++|.++.......
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~ 166 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQKKDTN 166 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEEecCCCC
Confidence 212222377889999888754322222369999999999995 543 3222 2345677789988876543211
Q ss_pred ccCcEEEEE-CCCCeEEEeeccCCCCCCce----eeEEEEECCEEEEEeccCCCCCCCeEEEEECCCC
Q 036185 468 ALGDLYTFD-VHACLWKKEDIAARSPHARF----SHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLH 530 (1057)
Q Consensus 468 ~~~~l~~yd-~~t~~W~~v~~~~~~P~~R~----~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~ 530 (1057)
.-++|+.+ -....|++.-.....+.+.. ....+..++.|++..+. ....-+..||+.++
T Consensus 167 -~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~---~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 167 -NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED---ENPFYIFYYNVGEN 230 (230)
T ss_pred -cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC---CCceEEEEEeccCC
Confidence 24788885 44567997543332122211 12344557888887652 11113888998764
No 228
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.97 E-value=3.2e-06 Score=78.53 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred EEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc---CCCCCccEEEECCCCCC-
Q 036185 900 VDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT---APKGVANRVCLGLIPTS- 975 (1057)
Q Consensus 900 lDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~---~~~~~~D~Vil~~~P~~- 975 (1057)
||++||+|.++..++......+++++|+||.+++.+++.+...... +...+..+..+. .....||.|++..+-+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999986555678999999999999999988887754 344444444443 33358999988643333
Q ss_pred ---hhHHHHHHHHhhCCCcEE
Q 036185 976 ---ENSWVTAVQALRSEGGTL 993 (1057)
Q Consensus 976 ---~~~~~~a~~~l~~~gg~l 993 (1057)
...+..+.++|+ +||+|
T Consensus 80 ~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-T-SS-EE
T ss_pred hhHHHHHHHHHHHcC-CCCCC
Confidence 344555555566 79876
No 229
>smart00612 Kelch Kelch domain.
Probab=97.95 E-value=1.1e-05 Score=63.43 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=41.4
Q ss_pred EEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECC
Q 036185 456 RLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKN 505 (1057)
Q Consensus 456 ~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~ 505 (1057)
+||++||.++...++++++||+.+++|+.+ .++|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeCC
Confidence 489999998777789999999999999987 57899999999988764
No 230
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.95 E-value=4.1e-05 Score=85.09 Aligned_cols=96 Identities=9% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCEEEEecCcccHhHHHHHHhCC---CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEEC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAK---ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLG 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~---a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~ 970 (1057)
.+.+|||++||+|+++..++.... ...|+++|+++.+++.++++. . ++.++.+|+.+... ...||.|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCCCcCCceeEEEEe
Confidence 457899999999999988874322 236999999999999998752 2 57889999887542 5579999877
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
..|. .+.+..++|+ +||++.+.....
T Consensus 159 ~~~~---~~~e~~rvLk-pgG~li~~~p~~ 184 (272)
T PRK11088 159 YAPC---KAEELARVVK-PGGIVITVTPGP 184 (272)
T ss_pred cCCC---CHHHHHhhcc-CCCEEEEEeCCC
Confidence 6443 3566778888 689888765443
No 231
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.92 E-value=6.3e-05 Score=83.57 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=85.4
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEECCCCC
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLGLIPT 974 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~~~P~ 974 (1057)
+|+|||||+|++++.+. ..|...|+|+|+++.|++..+.|... .++++|+.++.. ...+|+|+.+| |=
T Consensus 2 ~v~dLFsG~Gg~~~gl~-~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp-PC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLE-KAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF-PC 72 (275)
T ss_pred cEEEEccCcchHHHHHH-HcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC-CC
Confidence 58999999999988775 67888899999999999999998631 156778777654 24689999998 62
Q ss_pred C--------------h-hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeee
Q 036185 975 S--------------E-NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIE 1031 (1057)
Q Consensus 975 ~--------------~-~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 1031 (1057)
- . ..+...++++..-.-.+.+.||+...-... .....+.+.+..++.|+.+...++
T Consensus 73 q~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~-~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 73 QPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHD-NGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccC-chHHHHHHHHHHHhCCcEEEEEEE
Confidence 1 1 124455555543344678889987532100 123355666777888988655443
No 232
>PRK05785 hypothetical protein; Provisional
Probab=97.90 E-value=6.3e-05 Score=81.11 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=65.1
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
.++.+|||++||+|.++..++... ..+|+|+|+++.+++.+++. ..++++|+.+... ...||.|++...
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecCh
Confidence 457899999999999999887432 34799999999999998763 1346788877542 567999998652
Q ss_pred ----CCChhHHHHHHHHhhC
Q 036185 973 ----PTSENSWVTAVQALRS 988 (1057)
Q Consensus 973 ----P~~~~~~~~a~~~l~~ 988 (1057)
+.....+.+..++|++
T Consensus 120 l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hhccCCHHHHHHHHHHHhcC
Confidence 3335678888889985
No 233
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.90 E-value=3.5e-05 Score=78.95 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=71.8
Q ss_pred HHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CC
Q 036185 886 KLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KG 962 (1057)
Q Consensus 886 r~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~ 962 (1057)
...|++++.+|.+||||+||.|.+--.+. ..+...++++|++++.+..+.+ +|+ .++++|+.+-+. ..
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~-~~k~v~g~GvEid~~~v~~cv~----rGv----~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLK-DEKQVDGYGVEIDPDNVAACVA----RGV----SVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHH-HhcCCeEEEEecCHHHHHHHHH----cCC----CEEECCHHHhHhhCCCC
Confidence 34677889999999999999999986665 4445569999999999876554 454 579999987664 67
Q ss_pred CccEEEECCC----CCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 963 VANRVCLGLI----PTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 963 ~~D~Vil~~~----P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
.||.|||+-- ..+...+.+.+|+-+ .+++-+--|
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr--~~IVsFPNF 112 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGR--RAIVSFPNF 112 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcC--eEEEEecCh
Confidence 8999998640 122344555554433 444444444
No 234
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.88 E-value=0.00045 Score=74.42 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=97.1
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEE-ECCEEEEEcccCCCcccceEEEEECCC----CcEEEeecCCCCCCC
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV-IGSKIYVFGGLNNDTIFSSLHVLDTDT----LQWKELLINGEGPCA 444 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~-~~~~iyv~GG~~~~~~~~~v~~yD~~t----~~W~~~~~~g~~P~~ 444 (1057)
..-..||+.+++++.+.... --+..+.++ -++++++.||... -...+-.|++.+ ..|...... +..+
T Consensus 46 a~s~~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~--m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPND--MQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECccc--ccCC
Confidence 34567999999999886432 222222222 3789999999865 234577788765 678887653 6778
Q ss_pred cceeEEEEE-CCEEEEEecCCCCcccCcEEEEECCC------CeEEEeec-cCCCCCCceeeEEEEECCEEEEEeccCCC
Q 036185 445 RHSHSMLAY-GSRLYMFGGYNGEKALGDLYTFDVHA------CLWKKEDI-AARSPHARFSHTMFLYKNYLGLFGGCPVR 516 (1057)
Q Consensus 445 r~~~s~~~~-~~~lyv~GG~~~~~~~~~l~~yd~~t------~~W~~v~~-~~~~P~~R~~hs~~~~~~~l~i~GG~~~~ 516 (1057)
|...+++.+ +++++|+||... ..+.|-+.. ..|..+.. ....+...+-+....-+++||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 988888765 678999999862 233443431 11222211 11233344444555558999999873
Q ss_pred CCCCeEEEEECCCCeE-EEeeccCCC
Q 036185 517 QNYQELSLLDLQLHIW-KHLKLNYVC 541 (1057)
Q Consensus 517 ~~~~~i~~yd~~~~~W-~~v~~~~~~ 541 (1057)
+..+||..++++ +.++..+..
T Consensus 190 ----~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 ----GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ----CcEEEeCCCCeEEeeCCCCCCC
Confidence 678899999987 677655443
No 235
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.84 E-value=5.3e-05 Score=83.62 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=73.1
Q ss_pred CCCEEEEecCcccH----hHHHHHHhCC-----CcEEEEEecCHHHHHHHHHHHH----HcC------------------
Q 036185 895 KDEVIVDLFAGIGY----FVLPFLVRAK-----ARLVYACEWNPCAVEALKHNLQ----ANS------------------ 943 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~----fsl~~a~~~~-----a~~V~avD~n~~ai~~~~~N~~----~N~------------------ 943 (1057)
++-+|+|++||+|- +++.++.... ..+|+|+|+|+.+++.|++++- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999995 4555542211 2479999999999999998641 111
Q ss_pred ----CCccEEEEeCCccccCC-CCCccEEEECC-CCC-----ChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 944 ----VSDHCIVLEGDNRFTAP-KGVANRVCLGL-IPT-----SENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 944 ----~~~~v~~~~~D~~~~~~-~~~~D~Vil~~-~P~-----~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+..+|.|.++|+.+..+ ...||.|++.. +-+ -...+....+.|+ +||+|++-...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECcc
Confidence 22468999999988654 56799999842 222 2345777777887 79999986543
No 236
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.81 E-value=0.002 Score=68.73 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=99.6
Q ss_pred ceEEEEE-CCccC-CcEEEEEcccCCCCCCcccccEEEEeCCCCcE--------EEec-cCCCCCCccccEEEEEC--C-
Q 036185 289 GHSACIL-GNSIN-DSQILVFGGFGGMGRHARRNDLFLLDPLQGTI--------KAIH-TEGSPSPRLGHTSSLIG--D- 354 (1057)
Q Consensus 289 ghsa~~~-~~~~~-~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W--------~~l~-~~~~P~~R~~hs~v~~~--~- 354 (1057)
.-+.|.+ +...+ ....++-||.+. ++.-++.+|++...+... .... ....|.+|++|++.++. +
T Consensus 24 ~PAv~~~~~~~~~~~~~YlIHGGrTP--NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGK 101 (337)
T PF03089_consen 24 CPAVCHLSDPSDGEPEQYLIHGGRTP--NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGK 101 (337)
T ss_pred CccEeeecCCCCCCeeeEEecCCcCC--CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCc
Confidence 3455555 22222 334556788776 456778888887665431 1111 12789999999998872 2
Q ss_pred -EEEEEcccCCC-------------CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC--Ccc
Q 036185 355 -HMFIIGGRADP-------------LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN--DTI 418 (1057)
Q Consensus 355 -~Iyv~GG~~~~-------------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~--~~~ 418 (1057)
...+|||+.-- -.+...|+..|++-+-++.-... .+....+.|.+..-++.+|++||..- +..
T Consensus 102 ta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~sd~R 180 (337)
T PF03089_consen 102 TACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLESDSR 180 (337)
T ss_pred EEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEccCCCC
Confidence 47889997410 12445788888877766544311 34456788888888999999999753 344
Q ss_pred cceEEEEECC---CCcEEEeecCCCCCCCcceeEEE--EE-CCEEEEEecCCC
Q 036185 419 FSSLHVLDTD---TLQWKELLINGEGPCARHSHSML--AY-GSRLYMFGGYNG 465 (1057)
Q Consensus 419 ~~~v~~yD~~---t~~W~~~~~~g~~P~~r~~~s~~--~~-~~~lyv~GG~~~ 465 (1057)
...++++..+ ..-+-.... ++....-.++. .. .+..+|+|||..
T Consensus 181 pp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 181 PPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred CCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEecccc
Confidence 4455555432 111222222 12222222222 22 356889999854
No 237
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=0.0001 Score=76.94 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-------CCCcc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-------KGVAN 965 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-------~~~~D 965 (1057)
-+.++++|++..+||=+|..|... ...+|+++|+|+++++...+=.+..|++.+|.++++++.+.+. ...||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 457899999999998888776332 3457999999999999999999999999999999999988764 35799
Q ss_pred EEEECCCCCC--hhHHHHHHHHhhCCCcEEEEEc
Q 036185 966 RVCLGLIPTS--ENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 966 ~Vil~~~P~~--~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
.+++|- -.. ......++++++ .||+|.+--
T Consensus 152 faFvDa-dK~nY~~y~e~~l~Llr-~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFVDA-DKDNYSNYYERLLRLLR-VGGVIVVDN 183 (237)
T ss_pred EEEEcc-chHHHHHHHHHHHhhcc-cccEEEEec
Confidence 999986 222 356888999998 699876643
No 238
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.80 E-value=9e-05 Score=78.04 Aligned_cols=75 Identities=21% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCc
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVA 964 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~ 964 (1057)
.+.+.+.++++|||++||+|.++..++.. ....++++|+++.+++.+++ + +++++++|+.+.+ +...|
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCc
Confidence 45556678889999999999999888633 33468999999999988764 2 3577888887633 24579
Q ss_pred cEEEECC
Q 036185 965 NRVCLGL 971 (1057)
Q Consensus 965 D~Vil~~ 971 (1057)
|.|+++.
T Consensus 77 D~Vi~~~ 83 (194)
T TIGR02081 77 DYVILSQ 83 (194)
T ss_pred CEEEEhh
Confidence 9999875
No 239
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.79 E-value=0.00016 Score=78.86 Aligned_cols=145 Identities=15% Similarity=0.113 Sum_probs=101.0
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC---CccEEEEeCCccccCC--CC-CccEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV---SDHCIVLEGDNRFTAP--KG-VANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~---~~~v~~~~~D~~~~~~--~~-~~D~V 967 (1057)
.+.++||=++.|.|..+-.+++....++|++||++|..++.+++-...... +.|++++.+|++.++. .. +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999998888544467899999999999999997655322 3589999999999885 34 79999
Q ss_pred EECCCCC---------ChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEe
Q 036185 968 CLGLIPT---------SENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKW 1038 (1057)
Q Consensus 968 il~~~P~---------~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~ 1038 (1057)
++|+ +. ...++..+.+.|+ ++|++.+...+.... .+....+.+..+.....+.. ..-.|-+
T Consensus 155 i~D~-~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~~~~~~~-----~~~~~~i~~tl~~~F~~v~~---~~~~vP~ 224 (246)
T PF01564_consen 155 IVDL-TDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQAGSPFLH-----PELFKSILKTLRSVFPQVKP---YTAYVPS 224 (246)
T ss_dssp EEES-SSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEEEETTTT-----HHHHHHHHHHHHTTSSEEEE---EEEECTT
T ss_pred EEeC-CCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEccCcccc-----hHHHHHHHHHHHHhCCceEE---EEEEcCe
Confidence 9987 43 2567888888888 799999887544432 22344555555655543322 2344566
Q ss_pred ecCCceEEEE
Q 036185 1039 YAPHIRHLVA 1048 (1057)
Q Consensus 1039 ~aP~~~h~~~ 1048 (1057)
|.-+.|.++.
T Consensus 225 ~~~~~~~~~~ 234 (246)
T PF01564_consen 225 YGSGWWSFAS 234 (246)
T ss_dssp SCSSEEEEEE
T ss_pred ecccceeEEE
Confidence 6666666553
No 240
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.79 E-value=6.3e-05 Score=77.26 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC--
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL-- 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~-- 971 (1057)
..-.+|+||+||.|.-+-.++.+-....|+++|.++++++.+++- +. ++.|.++|.+.+-+...+|+++.|-
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp-~~~f~~aDl~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LP-DATFEEADLRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CC-CCceecccHhhcCCCCccchhhhhhhh
Confidence 456789999999999998888666777899999999999988653 33 5899999999998877889888773
Q ss_pred --CCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 --IPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 --~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|.....+..-+..|. +||+|.+.---.
T Consensus 103 qWlpdH~~ll~rL~~~L~-Pgg~LAVQmPdN 132 (257)
T COG4106 103 QWLPDHPELLPRLVSQLA-PGGVLAVQMPDN 132 (257)
T ss_pred hhccccHHHHHHHHHhhC-CCceEEEECCCc
Confidence 3666777888888888 799999986544
No 241
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.77 E-value=0.00014 Score=72.76 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=75.9
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCc-EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc--CC--------CCCc
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKAR-LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT--AP--------KGVA 964 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~-~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~--~~--------~~~~ 964 (1057)
..+||||+||.|.+=..++ ..+.. ..+++|-++.|+++|+.-++.+++++.|+|.+.|...- .+ ++.+
T Consensus 68 A~~VlDLGtGNG~~L~~L~-~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLA-KEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHH-HhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3499999999999999888 44543 49999999999999999999999998899999998762 11 3344
Q ss_pred cEEEECCC-CCC--hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 965 NRVCLGLI-PTS--ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 965 D~Vil~~~-P~~--~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
|.|-+.|- |.. .-++...-++|+ +||++.+.+|-...
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSCNFTK 186 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccC-CCcEEEEEecCccH
Confidence 55544320 111 223555555666 79988888886653
No 242
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.76 E-value=0.00015 Score=77.63 Aligned_cols=101 Identities=15% Similarity=0.270 Sum_probs=85.6
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEEECCC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVCLGLI 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vil~~~ 972 (1057)
.++||++||.|.|-+.+|+..--.-.+|||+-...+..|.+-++..++. |+.++++||.+++. .+..|.|.++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 4899999999999999996655667999999999999999999999997 79999999998774 34788998886
Q ss_pred CCC-------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 973 PTS-------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 973 P~~-------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.+ ..++....+.|+ +||.||+-+-..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~~ 167 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATDNE 167 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEecCH
Confidence 654 355777888887 799999877653
No 243
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.76 E-value=0.00017 Score=78.76 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=82.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
-.|.+|||++||.||++..++ ..||+.|+|+|-++.-+-..+-=.+.-+.+..+..+..-+.+......||.|++=-+-
T Consensus 114 L~gk~VLDIGC~nGY~~frM~-~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRML-GRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHh-hcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 469999999999999999998 6899999999998877665443223333332333332334443334679998753223
Q ss_pred CC----hhHHHHHHHHhhCCCcEEEEEcccccchhHH--HHHH------------HHHHHHHHHHhcCCc
Q 036185 974 TS----ENSWVTAVQALRSEGGTLHVHGNVKDSEEKL--WAEH------------VSKSIYEIARSEGHR 1025 (1057)
Q Consensus 974 ~~----~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~--~~~~------------~~~~i~~~~~~~g~~ 1025 (1057)
+. ...+......|+ +||.|++-+.+-+.+... ..++ -...+...+++.|+.
T Consensus 193 YHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred hccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence 22 344555555666 799999888764332111 0000 135788888899985
No 244
>PRK06202 hypothetical protein; Provisional
Probab=97.73 E-value=0.00016 Score=78.41 Aligned_cols=75 Identities=16% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCCCEEEEecCcccHhHHHHHHh---CC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVR---AK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCL 969 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~---~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil 969 (1057)
.++.+|||++||+|.++..++.. .| ..+|+|+|+++.+++.+++++..+++. +....+|.... ....||.|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~l~~-~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVT--FRQAVSDELVA-EGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCe--EEEEecccccc-cCCCccEEEE
Confidence 46779999999999999887632 22 247999999999999999987665543 33333333322 3457999999
Q ss_pred CC
Q 036185 970 GL 971 (1057)
Q Consensus 970 ~~ 971 (1057)
+.
T Consensus 136 ~~ 137 (232)
T PRK06202 136 NH 137 (232)
T ss_pred CC
Confidence 85
No 245
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.69 E-value=0.00013 Score=73.78 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=67.9
Q ss_pred HhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-CCCCccEE
Q 036185 889 MARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-PKGVANRV 967 (1057)
Q Consensus 889 ~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~~~~~D~V 967 (1057)
+.....++.+|||++||.|.++..++ ..+. +|+++|+++.+++. . ++.....+..... +...||.|
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALA-KRGF-EVTGVDISPQMIEK----------R-NVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHH-HTTS-EEEEEESSHHHHHH----------T-TSEEEEEECHTHHCHSSSEEEE
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHH-HhCC-EEEEEECCHHHHhh----------h-hhhhhhhhhhhhhccccchhhH
Confidence 33335778999999999999999886 5566 79999999999998 1 2222222222222 35689999
Q ss_pred EECCC----CCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 968 CLGLI----PTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 968 il~~~----P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
++.-. |.....+....++|+ +||++++.....
T Consensus 83 ~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~ 118 (161)
T PF13489_consen 83 ICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNR 118 (161)
T ss_dssp EEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBT
T ss_pred hhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCC
Confidence 88643 323444555666666 799999888764
No 246
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.68 E-value=0.00011 Score=80.88 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHhhc--cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCcc
Q 036185 888 RMARL--DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVAN 965 (1057)
Q Consensus 888 r~~~~--~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D 965 (1057)
++++. ..++++|||++||+|.++..++. . +..|+++|+++.+++.+++++.. ..+++++++|+.+.... .+|
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~-~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d 93 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLK-R-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFP 93 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHH-h-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcC
Confidence 44443 35788999999999999999983 3 35699999999999999988743 24799999999876432 355
Q ss_pred ---EEEECCCCCC
Q 036185 966 ---RVCLGLIPTS 975 (1057)
Q Consensus 966 ---~Vil~~~P~~ 975 (1057)
.|+.|+ |..
T Consensus 94 ~~~~vvsNl-Py~ 105 (253)
T TIGR00755 94 KQLKVVSNL-PYN 105 (253)
T ss_pred CcceEEEcC-Chh
Confidence 888888 654
No 247
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00017 Score=78.05 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=66.1
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCC--CccEEEEC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKG--VANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~--~~D~Vil~ 970 (1057)
+.+++.|+++++|.|.++.+++ ..+++|+|+|+++..++.+++-.. ..+|++++++|+..+-... .++.||.|
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll--~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLL--ERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHH--hhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 5668999999999999999998 456679999999999999998765 3348999999998875433 57899999
Q ss_pred CCCCChh
Q 036185 971 LIPTSEN 977 (1057)
Q Consensus 971 ~~P~~~~ 977 (1057)
+ |+...
T Consensus 103 l-PY~Is 108 (259)
T COG0030 103 L-PYNIS 108 (259)
T ss_pred C-CCccc
Confidence 9 88643
No 248
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.66 E-value=0.00029 Score=75.53 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=70.2
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHH-HHHHHHHcCCCccEE-EEeCCcc-----ccCC-CCCcc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEA-LKHNLQANSVSDHCI-VLEGDNR-----FTAP-KGVAN 965 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~-~~~N~~~N~~~~~v~-~~~~D~~-----~~~~-~~~~D 965 (1057)
.+|.+|||++||+|+|+.+++ ..|+++|+|||+++..+.. +++|.+ +. +-..|++ ++.. -..+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~-~~ga~~v~avD~~~~~l~~~l~~~~~-------v~~~~~~ni~~~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCAL-QKGAKEVYGVDVGYNQLAEKLRQDER-------VKVLERTNIRYVTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHH-HcCCCEEEEEeCCHHHHHHHHhcCCC-------eeEeecCCcccCCHhHcCCCceeee
Confidence 478899999999999999998 4689999999999977664 444432 22 1112222 1111 12466
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccccch-------------hHHHHHHHHHHHHHHHHhcCCc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSE-------------EKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
++++.+ ...+.....+|+ + |.+..-- .+.-+ ....+..+++.+...+.+.|+.
T Consensus 146 vsfiS~----~~~l~~i~~~l~-~-~~~~~L~-KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~ 211 (228)
T TIGR00478 146 VSFISL----ISILPELDLLLN-P-NDLTLLF-KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQ 211 (228)
T ss_pred EEEeeh----HhHHHHHHHHhC-c-CeEEEEc-ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCe
Confidence 666554 334666666676 3 4333221 11100 1223456667777777777765
No 249
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.65 E-value=0.0092 Score=64.54 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=106.2
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcc---cce-EEEEEC----C-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCC
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPR---HRH-AAAVIG----S-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGE 440 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R---~~h-sa~~~~----~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~ 440 (1057)
..++++||.|.+|..++. ++.++ ..+ .+..++ . +++.+...........+++|+..++.|+.+....
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~- 89 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSP- 89 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCC-
Confidence 468999999999999973 22211 111 111122 1 3555543322223356899999999999987432
Q ss_pred CCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEE-eeccCCCCCCc----eeeEEEEECCEEEEEeccCC
Q 036185 441 GPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKK-EDIAARSPHAR----FSHTMFLYKNYLGLFGGCPV 515 (1057)
Q Consensus 441 ~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~-v~~~~~~P~~R----~~hs~~~~~~~l~i~GG~~~ 515 (1057)
+........+.+++.+|-+.-.........|..||+.+.+|.. ++ +|..+ .....+.++++|.++.....
T Consensus 90 -~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 90 -PHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred -CCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCC
Confidence 2212222377889999888654322211269999999999995 52 23222 23456677899888765322
Q ss_pred CCCCCeEEEEE-CCCCeEEEeeccCCCCCc--cc--ceEEEEeCCEEEEEeC
Q 036185 516 RQNYQELSLLD-LQLHIWKHLKLNYVCKEL--FV--RSTANVVDDDLIMIGG 562 (1057)
Q Consensus 516 ~~~~~~i~~yd-~~~~~W~~v~~~~~~~~~--~~--~~~a~~~~~~iyi~GG 562 (1057)
. ..-++|+++ -....|++.-..+.++.+ .. ....+.-+++|++..+
T Consensus 165 ~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 165 T-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred C-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 1 225899986 446679886433321111 11 1233445678877665
No 250
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.64 E-value=0.00014 Score=80.69 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=66.9
Q ss_pred CHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC
Q 036185 882 NLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP 960 (1057)
Q Consensus 882 ~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~ 960 (1057)
+..|-...+. ..+|.+++|+-||.|+++..++...+ ..+|+|+|.+|+|++.+++++.. .++++++++|..++..
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKE 82 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHH
Confidence 3444333332 35788999999999999999995543 35799999999999999998754 3589999999887643
Q ss_pred ---C--CCccEEEECC
Q 036185 961 ---K--GVANRVCLGL 971 (1057)
Q Consensus 961 ---~--~~~D~Vil~~ 971 (1057)
. ..+|.|++|+
T Consensus 83 ~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 83 VLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHcCCCccCEEEECC
Confidence 2 1699999998
No 251
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.59 E-value=0.00022 Score=81.46 Aligned_cols=121 Identities=26% Similarity=0.305 Sum_probs=80.8
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEEECCCC
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVCLGLIP 973 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vil~~~P 973 (1057)
+|+|||||+|+|++-+- .+|...|.|+|+++.|++..+.|.. ....+|+.++.. . .+|+++.+| |
T Consensus 2 ~~~dlFsG~Gg~~~g~~-~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp-P 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLE-QAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP-P 70 (335)
T ss_dssp EEEEET-TTTHHHHHHH-HTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHH-hcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc-C
Confidence 68999999999999875 6888889999999999999999975 567888877652 2 589999998 6
Q ss_pred C---C------------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeee
Q 036185 974 T---S------------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTI 1030 (1057)
Q Consensus 974 ~---~------------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 1030 (1057)
= | ...+...+++++.-.-.+.+-||++..--.. .....+.+.+..++.|+.+...+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~-~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSK-NGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGG-GHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccc-cccccccccccccccceeehhcc
Confidence 1 1 0124445554431122467779987542111 12345677777788998765443
No 252
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.58 E-value=0.00026 Score=86.17 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred EeeCCCHHHHHHH-h-hccC-----CCCEEEEecCcccHhHHHHHHhCC--------CcEEEEEecCHHHHHHHHHHHHH
Q 036185 877 MFSWGNLSEKLRM-A-RLDC-----KDEVIVDLFAGIGYFVLPFLVRAK--------ARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 877 ~f~~~~~~er~r~-~-~~~~-----~g~~VlDlf~G~G~fsl~~a~~~~--------a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
||.|....+.+-- + .... ...+|+|.+||+|.|.++++.+.. ...++|+|+++.+++.++.|+..
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 5666666655421 1 1111 345899999999999999875331 14689999999999999999988
Q ss_pred cCCCccEEEEeCCcccc----CC--CCCccEEEECCCCCC
Q 036185 942 NSVSDHCIVLEGDNRFT----AP--KGVANRVCLGLIPTS 975 (1057)
Q Consensus 942 N~~~~~v~~~~~D~~~~----~~--~~~~D~Vil~~~P~~ 975 (1057)
.+.- .+.+.++|.... .. ...||+||.|| |..
T Consensus 86 ~~~~-~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP-Py~ 123 (524)
T TIGR02987 86 FALL-EINVINFNSLSYVLLNIESYLDLFDIVITNP-PYG 123 (524)
T ss_pred cCCC-CceeeecccccccccccccccCcccEEEeCC-Ccc
Confidence 7621 245565553321 11 24799999999 865
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.56 E-value=0.00063 Score=71.80 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=76.8
Q ss_pred EEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCC-ccEEEECCCCCChh
Q 036185 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGV-ANRVCLGLIPTSEN 977 (1057)
Q Consensus 899 VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~-~D~Vil~~~P~~~~ 977 (1057)
|+|++|-=|++++.+++...+.+|+|+|+++..++.|++|++.+++.++++++.+|..+.++... .|.|++.-+. ..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG--G~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG--GE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE---HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC--HH
Confidence 68999999999999996666789999999999999999999999999999999999998887443 6766553312 22
Q ss_pred HHHHHHH----HhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 978 SWVTAVQ----ALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 978 ~~~~a~~----~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
.+...+. .+. ....+++.-..+ ...+++.+.++|+.+
T Consensus 79 lI~~ILe~~~~~~~-~~~~lILqP~~~-----------~~~LR~~L~~~gf~I 119 (205)
T PF04816_consen 79 LIIEILEAGPEKLS-SAKRLILQPNTH-----------AYELRRWLYENGFEI 119 (205)
T ss_dssp HHHHHHHHTGGGGT-T--EEEEEESS------------HHHHHHHHHHTTEEE
T ss_pred HHHHHHHhhHHHhc-cCCeEEEeCCCC-----------hHHHHHHHHHCCCEE
Confidence 2222222 222 233566655543 346778888888754
No 254
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.55 E-value=0.00013 Score=77.94 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=76.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHH-HHHHHcCC----------CccEEEEeCCccccCCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALK-HNLQANSV----------SDHCIVLEGDNRFTAPK 961 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~-~N~~~N~~----------~~~v~~~~~D~~~~~~~ 961 (1057)
..++.+||+.+||.|+-.+.+| ..| -.|+|+|+++.|++.+. +|.....+ .++|+++++|.+++.+.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La-~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLA-EQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHH-HTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHH-HCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4567799999999999999998 445 47999999999999984 33221111 24689999999997653
Q ss_pred C--CccEEE-----ECCCCCChhHHHHHHHHhhCCCcE--EEEEcccccchhHHHHHHHHHHHHHHHH
Q 036185 962 G--VANRVC-----LGLIPTSENSWVTAVQALRSEGGT--LHVHGNVKDSEEKLWAEHVSKSIYEIAR 1020 (1057)
Q Consensus 962 ~--~~D~Vi-----l~~~P~~~~~~~~a~~~l~~~gg~--l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1020 (1057)
. +||.|. +.++|.-...+...+..|.++||. |...........+++..-..+.|+++..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 2 577763 344455566666666555557888 4443332222223332333345555544
No 255
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.52 E-value=0.0027 Score=68.45 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=96.7
Q ss_pred cEEEEeCCCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCC----CcEEEeeccCCCCCcc
Q 036185 321 DLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAK----SKWTLLECSGSVFQPR 395 (1057)
Q Consensus 321 d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~g~~p~~R 395 (1057)
....||+.+++++.+.. +..-++.+-+.. ++++++.||... -...+-.|++.+ ..|.+.. +.|..+|
T Consensus 47 ~s~~yD~~tn~~rpl~v---~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~--~~m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV---QTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESP--NDMQSGR 118 (243)
T ss_pred EEEEEecCCCcEEeccC---CCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECc--ccccCCC
Confidence 45679999999998753 333333333333 679999999854 234567788765 6798875 2488999
Q ss_pred cceEEEEE-CCEEEEEcccCCCcccceEEEEECCC-----CcEEEeecC-CCCCCCcceeEEEEECCEEEEEecCCCCcc
Q 036185 396 HRHAAAVI-GSKIYVFGGLNNDTIFSSLHVLDTDT-----LQWKELLIN-GEGPCARHSHSMLAYGSRLYMFGGYNGEKA 468 (1057)
Q Consensus 396 ~~hsa~~~-~~~iyv~GG~~~~~~~~~v~~yD~~t-----~~W~~~~~~-g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~ 468 (1057)
.+.+++.+ +++++|+||.... ..+.+.... ..|..+... ...+..-+-+..+.-+++||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence 99999998 7889999998732 233333311 123222211 1234555666677778999999874
Q ss_pred cCcEEEEECCCCeE-EEe
Q 036185 469 LGDLYTFDVHACLW-KKE 485 (1057)
Q Consensus 469 ~~~l~~yd~~t~~W-~~v 485 (1057)
+-..||..++++ ..+
T Consensus 190 --~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 190 --GSIIYDYKTNTVVRTL 205 (243)
T ss_pred --CcEEEeCCCCeEEeeC
Confidence 467889999987 444
No 256
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.52 E-value=0.00021 Score=71.12 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=51.1
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT 958 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~ 958 (1057)
+|+|++||+|.+++.++......+|+++|.+|.+++.+++|++.|++. ++.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence 489999999999999984433348999999999999999999999987 588888776653
No 257
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.51 E-value=0.0012 Score=68.38 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=78.2
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCChh
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSEN 977 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~~ 977 (1057)
+++|+++|-|.=||++|......+|+.+|.+..=+..+++=+..-+++ |++++++.+.+......||.|+.=-+-....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~ 129 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAPLDK 129 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSSHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcCHHH
Confidence 899999999999999986566668999999999999999999999998 7999999999943466799998865444455
Q ss_pred HHHHHHHHhhCCCcEEEEEccc
Q 036185 978 SWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 978 ~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.+..+...++ +||.+..+--.
T Consensus 130 l~~~~~~~l~-~~G~~l~~KG~ 150 (184)
T PF02527_consen 130 LLELARPLLK-PGGRLLAYKGP 150 (184)
T ss_dssp HHHHHGGGEE-EEEEEEEEESS
T ss_pred HHHHHHHhcC-CCCEEEEEcCC
Confidence 6666666666 68877777443
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.42 E-value=0.0027 Score=67.52 Aligned_cols=123 Identities=12% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEEC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLG 970 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~ 970 (1057)
-.|++||=++=.- ..||++|.....++|+-+|+++..++++++.++..|+. ++.++.|+++-+| .++||.++.|
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE-
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC
Confidence 3578888776433 56676665466789999999999999999999999996 9999999999988 4689999999
Q ss_pred CCCCCh----hHHHHHHHHhhCCCcEEEEEcccccc-hhHHHHHHHHHHHHHHHHhcCCce
Q 036185 971 LIPTSE----NSWVTAVQALRSEGGTLHVHGNVKDS-EEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 971 ~~P~~~----~~~~~a~~~l~~~gg~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
| |... -++..++.+|+.+|+. .+..+++.. ....| ..+++....+|+-+
T Consensus 120 P-PyT~~G~~LFlsRgi~~Lk~~g~~-gy~~~~~~~~s~~~~-----~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 120 P-PYTPEGLKLFLSRGIEALKGEGCA-GYFGFTHKEASPDKW-----LEVQRFLLEMGLVI 173 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-E-EEEEE-TTT--HHHH-----HHHHHHHHTS--EE
T ss_pred C-CCCHHHHHHHHHHHHHHhCCCCce-EEEEEecCcCcHHHH-----HHHHHHHHHCCcCH
Confidence 9 7663 4588899999866654 455666643 22222 35666666787654
No 259
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.41 E-value=0.00065 Score=72.59 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=72.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH-------cC----CCccEEEEeCCccccCC--
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA-------NS----VSDHCIVLEGDNRFTAP-- 960 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~-------N~----~~~~v~~~~~D~~~~~~-- 960 (1057)
.++.+||+..||-|.=++.+| ..|. .|+|+|+++.||+.+.+...+ +. -..+++++++|.+++.+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA-~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFL-SKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHH-hCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 356899999999999999998 4555 499999999999998662110 00 01368999999999743
Q ss_pred --CCCccEE-----EECCCCCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 961 --KGVANRV-----CLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 961 --~~~~D~V-----il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
...||.| ++-++|.-.......+..|.++||.+++..+..+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 2356764 2334344444455555444447998888877543
No 260
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.38 E-value=0.0014 Score=71.37 Aligned_cols=98 Identities=21% Similarity=0.205 Sum_probs=74.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
....+|||+++|.|.+++.++++...-+++..|+ |+.++.+++ .++|+++.+|.++.+|. +|+|++.-+-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhh
Confidence 3456899999999999999997666668999999 999998888 56899999999976665 9999986543
Q ss_pred CC------hhHHHHHHHHhhCCC--cEEEEEcccccc
Q 036185 974 TS------ENSWVTAVQALRSEG--GTLHVHGNVKDS 1002 (1057)
Q Consensus 974 ~~------~~~~~~a~~~l~~~g--g~l~~~~~~~~~ 1002 (1057)
+. ...+..+..+|+ +| |.|++++..-..
T Consensus 169 h~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMVLPD 204 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEEECS
T ss_pred hhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeeccCC
Confidence 32 233666677777 57 999999887543
No 261
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.0022 Score=67.71 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=98.5
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCC-ccEEEECCCCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGV-ANRVCLGLIPT 974 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~-~D~Vil~~~P~ 974 (1057)
+.+++|++||.|.=|+++|-.....+|+-+|.+..-+..+++=.+.-+++ |++++++.+.++-.... ||+|..=-+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehccc
Confidence 58999999999999999884344445999999999999999999999997 79999999999976445 99997655343
Q ss_pred ChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEE
Q 036185 975 SENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVA 1048 (1057)
Q Consensus 975 ~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~ 1048 (1057)
-.....-+..+++ .||.+..+-+..-.+ -...++.++...|..+. .+.........+..|+++
T Consensus 147 L~~l~e~~~pllk-~~g~~~~~k~~~~~~-------e~~e~~~a~~~~~~~~~---~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 147 LNVLLELCLPLLK-VGGGFLAYKGLAGKD-------ELPEAEKAILPLGGQVE---KVFSLTVPELDGERHLVI 209 (215)
T ss_pred hHHHHHHHHHhcc-cCCcchhhhHHhhhh-------hHHHHHHHHHhhcCcEE---EEEEeecCCCCCceEEEE
Confidence 4555666666777 566655554444322 14556667776666532 112223334444467665
No 262
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.37 E-value=0.0015 Score=73.01 Aligned_cols=127 Identities=16% Similarity=0.083 Sum_probs=83.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
..+|.++||++|..|+|+-.++ ..|+ +|+|||..|- ..++.. +.+|+.+++|.+.+.+ ...+|.|++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~-~rG~-~V~AVD~g~l-----~~~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLV-RRGM-FVTAVDNGPM-----AQSLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHH-HcCC-EEEEEechhc-----CHhhhC---CCCEEEEeccCcccCCCCCCCCEEEEec
Confidence 4689999999999999999887 5666 7999996652 222322 2479999999999886 66789999998
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcc-cc---cchhHHHHHHHHHHHHHHHHhcCCceeeeeeE
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGN-VK---DSEEKLWAEHVSKSIYEIARSEGHRWEVTIEH 1032 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~-~~---~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 1032 (1057)
.-.+..........+. .|+....-| -+ ... ........+.|.+...+.|..+.+.+.|
T Consensus 279 ve~P~rva~lm~~Wl~--~g~cr~aIfnLKlpmk~r-~~~v~~~l~~i~~~l~~~g~~~~~~~kh 340 (357)
T PRK11760 279 VEKPARVAELMAQWLV--NGWCREAIFNLKLPMKKR-YEEVRQCLELIEEQLDENGINAQIQAKQ 340 (357)
T ss_pred ccCHHHHHHHHHHHHh--cCcccEEEEEEEcCCCCC-HHHHHHHHHHHHHHHHHcCCccceeeee
Confidence 6666666655555565 333211111 11 111 1112444556777777788766555444
No 263
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0015 Score=66.92 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=79.2
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEE-EEeCCccccC--CCCCccEEEECCCC-
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCI-VLEGDNRFTA--PKGVANRVCLGLIP- 973 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~-~~~~D~~~~~--~~~~~D~Vil~~~P- 973 (1057)
.||+++||+|+-=-.+- -.....|+++|-||.+-+.+.+.++.|+-. +++ |+.++.++.. +..++|.||..+.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 48999999998653332 234557999999999999999999999765 576 9999999876 47789998876533
Q ss_pred ---CChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 974 ---TSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 974 ---~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
...+.+.+..++|+ +||.+++.+-+...
T Consensus 157 Sve~~~k~L~e~~rlLR-pgG~iifiEHva~~ 187 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCHHHHHHHHHHhcC-CCcEEEEEeccccc
Confidence 23566888888888 68888887776643
No 264
>PHA01634 hypothetical protein
Probab=97.26 E-value=0.00094 Score=62.87 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=70.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
-.+++|+|++|++|--+|..+ .+||++|+|+|.+|.-.+.+++|++.|.+-++..... ++.. -+.+|+.+||-
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~-l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iDC- 100 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFL-LRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMDC- 100 (156)
T ss_pred ecCCEEEEecCCccchhhHHh-hcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEEc-
Confidence 468999999999999999998 7899999999999999999999999998754433222 1111 24589998886
Q ss_pred CCChhHHHHHHHHhhC-CCcEEEEEccccc
Q 036185 973 PTSENSWVTAVQALRS-EGGTLHVHGNVKD 1001 (1057)
Q Consensus 973 P~~~~~~~~a~~~l~~-~gg~l~~~~~~~~ 1001 (1057)
-..++.+.-. .|++ ..=-+.+|++.+.
T Consensus 101 eGCE~~l~v~--~l~ky~q~ci~ihdwt~n 128 (156)
T PHA01634 101 EGCEEKLNVS--MLKKYKQWCIGIHDWTKN 128 (156)
T ss_pred cchHHhcCHH--HHHHHHhheeeeehhhhh
Confidence 3333333222 2321 1334677777764
No 265
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.24 E-value=0.0051 Score=64.18 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=92.6
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-CCccE
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-GVANR 966 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~ 966 (1057)
.++.++..+..++|++|==+|+++.+.+...+..++|+|+++-.++.+.+|++.|++.+++++..+|....+.. ..+|.
T Consensus 9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCE
Confidence 46667888999999999999999999866668899999999999999999999999999999999999887763 36787
Q ss_pred EEECCCCCC--hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 967 VCLGLIPTS--ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 967 Vil~~~P~~--~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
|++.-+... ...+++....|. .--.+++--+.+.. .+++.+.+.++.+
T Consensus 89 ivIAGMGG~lI~~ILee~~~~l~-~~~rlILQPn~~~~-----------~LR~~L~~~~~~I 138 (226)
T COG2384 89 IVIAGMGGTLIREILEEGKEKLK-GVERLILQPNIHTY-----------ELREWLSANSYEI 138 (226)
T ss_pred EEEeCCcHHHHHHHHHHhhhhhc-CcceEEECCCCCHH-----------HHHHHHHhCCcee
Confidence 655332321 333444444444 12356666666543 3445555555543
No 266
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00099 Score=76.05 Aligned_cols=120 Identities=26% Similarity=0.310 Sum_probs=84.7
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCC----CccEEEECCC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKG----VANRVCLGLI 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~----~~D~Vil~~~ 972 (1057)
-+++|||||+|++.+-+. .+|..-+.|+|++|.|++-.+.|... ..++..|..++.... .+|+++.+|
T Consensus 4 ~~~idLFsG~GG~~lGf~-~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp- 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFE-EAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP- 75 (328)
T ss_pred ceEEeeccCCchHHHHHH-hcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC-
Confidence 479999999999998875 67888899999999999999998653 356777877665422 689999998
Q ss_pred CCCh------------------hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeee
Q 036185 973 PTSE------------------NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVT 1029 (1057)
Q Consensus 973 P~~~------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 1029 (1057)
|=-. -.+...+..++| ...+-+|++..-.. .....+.|.+..++.|+.+...
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P---~~fv~ENV~gl~~~--~~~~~~~i~~~L~~~GY~~~~~ 145 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP---KFFVLENVKGLLSS--KGQTFDEIKKELEELGYGVEFN 145 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC---CEEEEecCchHHhc--CchHHHHHHHHHHHcCCcchHh
Confidence 6210 113334444442 78888998753111 2236778888888999874433
No 267
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.22 E-value=0.0015 Score=78.71 Aligned_cols=103 Identities=12% Similarity=0.213 Sum_probs=83.2
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEEECC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVCLGL 971 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vil~~ 971 (1057)
.+..+||++||.|.|.+.+|....-..++|+|+....+..+.+.++..++. |+.++++|+..+. +....|.|.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 577999999999999999996555567999999999999999999999997 7999999975433 456689998876
Q ss_pred CCCC-------------hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 IPTS-------------ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ~P~~-------------~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|.+ ..++....+.|+ +||.||+-+-..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD~~ 465 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASDIE 465 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcCCH
Confidence 544 244666667777 799999887764
No 268
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.0019 Score=73.38 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=81.6
Q ss_pred EEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECCCC---
Q 036185 899 IVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGLIP--- 973 (1057)
Q Consensus 899 VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~~P--- 973 (1057)
|+|||||+|++++-+- .+|...|.|+|+++.|++..+.|.. + .++.+|+.++.. ...+|+++.+| |
T Consensus 1 vidLF~G~GG~~~Gl~-~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~-PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFE-QAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF-PCQP 71 (315)
T ss_pred CEEEecCccHHHHHHH-HcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC-CCcc
Confidence 6899999999998874 6788878999999999999999852 1 345678777643 23479999998 6
Q ss_pred CC-----------h-hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeee
Q 036185 974 TS-----------E-NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTI 1030 (1057)
Q Consensus 974 ~~-----------~-~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 1030 (1057)
.+ . ..+...+++++.-.--+.+-+|++..-... .....+.+....+..|+.+...+
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~-~~~~~~~i~~~l~~~GY~v~~~~ 139 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHD-KGRTFKVIIETLEELGYKVYYKV 139 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcc-cchHHHHHHHHHHhCCCEEEEEE
Confidence 11 1 124455556643334578889987431000 01334566666778898765443
No 269
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.14 E-value=0.0028 Score=70.10 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=50.0
Q ss_pred CCEEEEecCccc-HhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc-CCCccEEEEeCCccc-cCC-----CCCccEE
Q 036185 896 DEVIVDLFAGIG-YFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN-SVSDHCIVLEGDNRF-TAP-----KGVANRV 967 (1057)
Q Consensus 896 g~~VlDlf~G~G-~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N-~~~~~v~~~~~D~~~-~~~-----~~~~D~V 967 (1057)
.-++||+++|.- .++|..++..+- +++|.|+++.|++.|++|++.| +++++|+++...... ++. .+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 457999999966 557777654444 6999999999999999999999 999999988664332 221 3579999
Q ss_pred EECCCCCC
Q 036185 968 CLGLIPTS 975 (1057)
Q Consensus 968 il~~~P~~ 975 (1057)
++|| |..
T Consensus 182 mCNP-PFy 188 (299)
T PF05971_consen 182 MCNP-PFY 188 (299)
T ss_dssp EE------
T ss_pred ecCC-ccc
Confidence 9999 743
No 270
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.12 E-value=0.0022 Score=67.26 Aligned_cols=62 Identities=11% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCCHHHHHHHhhc-cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 880 WGNLSEKLRMARL-DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 880 ~~~~~er~r~~~~-~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
+.....|.+.+.. -..+..+||++|-.|..++.+|+.-++..|+++||++.-|+.|++|++-
T Consensus 42 ~~~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 42 PGDSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CCCCChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 3444455555542 2356789999999999999999888999999999999999999999754
No 271
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0015 Score=68.61 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=68.1
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCCC---
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLIP--- 973 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~P--- 973 (1057)
.++|++||+|--++.+| ---++|+|+|+|+.+++.|++--...-......+...+..+++. ..+.|.|++.---
T Consensus 36 ~a~DvG~G~Gqa~~~ia--e~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIA--EHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHH--HhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 89999999995454444 34678999999999999888743222211123344444455442 4578998764211
Q ss_pred CChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 974 TSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 974 ~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
....+...+-++|+++||++.+....
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 12677899999999999988877665
No 272
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.09 E-value=0.0031 Score=69.56 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=94.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC-----CC-ccEEEEeCCccccCC--CCCc
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS-----VS-DHCIVLEGDNRFTAP--KGVA 964 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~-----~~-~~v~~~~~D~~~~~~--~~~~ 964 (1057)
++.-+.||-++.|-|-=.-.+.+..+..+|+-||++|.++|.+++|..+-. ++ .|++++..|++.+++ ...|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 456789999999999888888765668899999999999999997754332 33 489999999999997 4589
Q ss_pred cEEEECCCCCC----------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 965 NRVCLGLIPTS----------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 965 D~Vil~~~P~~----------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
|.||.|+ |.+ .++...+.+.|+ ++|.+++-.-++....+ ..-+|.+..++.|+.
T Consensus 367 D~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~VvQags~y~tp~-----vfw~i~aTik~AG~~ 430 (508)
T COG4262 367 DVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVVQAGSPYFTPR-----VFWRIDATIKSAGYR 430 (508)
T ss_pred cEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcC-cCceEEEecCCCccCCc-----eeeeehhHHHhCcce
Confidence 9999998 654 345556666776 79988887776654332 123455556677754
No 273
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0085 Score=66.35 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=80.6
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC--C-CccEEEEeCCccccCC--CCCccEEEECC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS--V-SDHCIVLEGDNRFTAP--KGVANRVCLGL 971 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~--~-~~~v~~~~~D~~~~~~--~~~~D~Vil~~ 971 (1057)
++||=++-|-|..+-.+++.....++++||+||.-++.+++=...-. . +.|++++.+|+.+++. ..+||+||+|.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 59999999999999999976667899999999999999999553322 2 4699999999999986 34799999986
Q ss_pred CCC--------ChhHHHHHHHHhhCCCcEEEEE
Q 036185 972 IPT--------SENSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 972 ~P~--------~~~~~~~a~~~l~~~gg~l~~~ 996 (1057)
-+. ...+.....++|+ ++|++..-
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence 333 2566777778887 78888777
No 274
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.003 Score=65.05 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=75.7
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcE--EEEEecCHHHHHHHHHHHHHcC--------C-CccEEEEeCCccccCC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARL--VYACEWNPCAVEALKHNLQANS--------V-SDHCIVLEGDNRFTAP 960 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~--V~avD~n~~ai~~~~~N~~~N~--------~-~~~v~~~~~D~~~~~~ 960 (1057)
.+.+|-..||+++|+||++-.++..-++.- +.+||.-|+-|++.++|+..-- + ..+..++.||.+...+
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 367899999999999999988874444443 4999999999999999997653 1 1467889999998765
Q ss_pred -CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEE
Q 036185 961 -KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLH 994 (1057)
Q Consensus 961 -~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~ 994 (1057)
...||+|.++- ...+....-+..|++.|++|.
T Consensus 159 e~a~YDaIhvGA--aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 159 EQAPYDAIHVGA--AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ccCCcceEEEcc--CccccHHHHHHhhccCCeEEE
Confidence 55799999985 334445556677775444444
No 275
>PRK04148 hypothetical protein; Provisional
Probab=97.07 E-value=0.0046 Score=60.29 Aligned_cols=96 Identities=16% Similarity=0.003 Sum_probs=67.4
Q ss_pred CCCEEEEecCcccH-hHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--CCCccEEEECC
Q 036185 895 KDEVIVDLFAGIGY-FVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--KGVANRVCLGL 971 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~-fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--~~~~D~Vil~~ 971 (1057)
++.+|+|++||.|. ++..++ ..| ..|+|+|+||.+++.++++ + +.++.+|.++.-. -..+|.|.---
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G-~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESG-FDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCC-CEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 46789999999996 888776 445 4799999999999988775 2 5788999987543 24588887654
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+|. +.....+++.++-|.-+++...+.+.
T Consensus 86 pp~--el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 86 PPR--DLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred CCH--HHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 232 22233333344457777887777654
No 276
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.05 E-value=0.0017 Score=69.20 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=65.6
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
.++++++||+++-|+|.++..++ -.++.|+|+|++|.++..+.+-.+---..++..++.||....- -..||.+|.|+
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lL--e~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLL--EAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LPRFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHH--HhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-CcccceeeccC
Confidence 36889999999999999999998 3455699999999999999987655445578999999998753 23589999998
Q ss_pred CCC
Q 036185 972 IPT 974 (1057)
Q Consensus 972 ~P~ 974 (1057)
|+
T Consensus 132 -Py 133 (315)
T KOG0820|consen 132 -PY 133 (315)
T ss_pred -Cc
Confidence 54
No 277
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.04 E-value=0.0095 Score=64.78 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=76.9
Q ss_pred CCCEEEEecCcccHhHHHHHHhCC--CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEE
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAK--ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVC 968 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~--a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vi 968 (1057)
..-+|||+.||.|-+-+.++.... ...|.-.|.+|..|+..++=++.+|+++-+.|.++|+++.-. ...++++|
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 345899999999999999885444 368999999999999999999999999766999999998632 34567766
Q ss_pred E-C---CCCCC---hhHHHHHHHHhhCCCcEEEEEc
Q 036185 969 L-G---LIPTS---ENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 969 l-~---~~P~~---~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
+ + ++|.. ..++.....++. +||+|++-.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcC
Confidence 5 3 33332 123444445555 799988777
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0064 Score=68.09 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=76.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhC--CCc--EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--------
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRA--KAR--LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-------- 960 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~--~a~--~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-------- 960 (1057)
+++|++||||||--|.=++.++... ... .|+|.|.++.-+..++.-++.-.-. ++.+.+.|+..+..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCch
Confidence 5899999999999999986665322 222 8999999999999999877444322 45555555543321
Q ss_pred --CCCccEEEECCCCCChh----------------------------HHHHHHHHhhCCCcEEEEEcccccc
Q 036185 961 --KGVANRVCLGLIPTSEN----------------------------SWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 961 --~~~~D~Vil~~~P~~~~----------------------------~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
...||+|++|- |=+.. .+..++++|+ +||.|+|++|+-..
T Consensus 232 ~~~~~fDrVLvDV-PCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk-~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 232 KEQLKFDRVLVDV-PCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK-VGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhcceeEEec-ccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc-CCCEEEEeccCCCc
Confidence 24699999997 63211 1556777777 79999999998643
No 279
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.98 E-value=0.014 Score=61.36 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=85.0
Q ss_pred eeCCCHHHHHHHhhc-----cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEE
Q 036185 878 FSWGNLSEKLRMARL-----DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVL 951 (1057)
Q Consensus 878 f~~~~~~er~r~~~~-----~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~ 951 (1057)
|+|....--..++.- +++|.+||-|+|.+|+..-+++-..+ -..|||||.+|++.+.+-.=++. ..||.++
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeee
Confidence 455544433344332 46899999999999999988875555 45799999999999988854444 2379999
Q ss_pred eCCccccCC----CCCccEEEECCCCCChhH---HHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC
Q 036185 952 EGDNRFTAP----KGVANRVCLGLIPTSENS---WVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 952 ~~D~~~~~~----~~~~D~Vil~~~P~~~~~---~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 1024 (1057)
-+|++.... -+..|+|+.|- ..+.+. ...|-..|+ +||.+.+.--....+.-...+++.+.-.+..++.|+
T Consensus 128 l~DAr~P~~Y~~lv~~VDvI~~DV-aQp~Qa~I~~~Na~~fLk-~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~ 205 (229)
T PF01269_consen 128 LEDARHPEKYRMLVEMVDVIFQDV-AQPDQARIAALNARHFLK-PGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGF 205 (229)
T ss_dssp ES-TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEE-EEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTC
T ss_pred eccCCChHHhhcccccccEEEecC-CChHHHHHHHHHHHhhcc-CCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCC
Confidence 999986432 24689999997 544332 344444566 688776655443222111113333333334455565
Q ss_pred c
Q 036185 1025 R 1025 (1057)
Q Consensus 1025 ~ 1025 (1057)
+
T Consensus 206 ~ 206 (229)
T PF01269_consen 206 K 206 (229)
T ss_dssp E
T ss_pred C
Confidence 4
No 280
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.95 E-value=0.0089 Score=58.62 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=67.8
Q ss_pred EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---CCCCccEEEEC--CCCCCh-----------hHHHHHHH
Q 036185 921 LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---PKGVANRVCLG--LIPTSE-----------NSWVTAVQ 984 (1057)
Q Consensus 921 ~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---~~~~~D~Vil~--~~P~~~-----------~~~~~a~~ 984 (1057)
+|+|.||.++|++..++.++.+++.+++++++..=..+. +...+|.|+.| .+|... ..+..++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 599999999999999999999999889999987754433 33367888765 556542 33778888
Q ss_pred HhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC-ceeeeeeEEEEe
Q 036185 985 ALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH-RWEVTIEHIERV 1036 (1057)
Q Consensus 985 ~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~-~~~~~~~~~~~V 1036 (1057)
+|+ +||+|.+..-..+..-. ++ .+.+.+.++...- .|. +.+.+.+
T Consensus 81 lL~-~gG~i~iv~Y~GH~gG~---eE-~~av~~~~~~L~~~~~~--V~~~~~~ 126 (140)
T PF06962_consen 81 LLK-PGGIITIVVYPGHPGGK---EE-SEAVEEFLASLDQKEFN--VLKYQFI 126 (140)
T ss_dssp HEE-EEEEEEEEE--STCHHH---HH-HHHHHHHHHTS-TTTEE--EEEEEES
T ss_pred hhc-cCCEEEEEEeCCCCCCH---HH-HHHHHHHHHhCCcceEE--EEEEEcc
Confidence 888 69987777666443211 11 3466667766553 354 3344443
No 281
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.94 E-value=0.0035 Score=66.20 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=52.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH-------cCC-CccEEEEeCCccccCC----
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA-------NSV-SDHCIVLEGDNRFTAP---- 960 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~-------N~~-~~~v~~~~~D~~~~~~---- 960 (1057)
+.++++++||+||+|-..+.+|...+++++++||+.|...+.++++.+. .+. ..++++.++|..+...
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 4678999999999999999888778899999999999999888765433 333 2468889999765321
Q ss_pred CCCccEEEECCC
Q 036185 961 KGVANRVCLGLI 972 (1057)
Q Consensus 961 ~~~~D~Vil~~~ 972 (1057)
-..+|+|++|..
T Consensus 120 ~s~AdvVf~Nn~ 131 (205)
T PF08123_consen 120 WSDADVVFVNNT 131 (205)
T ss_dssp GHC-SEEEE--T
T ss_pred hcCCCEEEEecc
Confidence 134899999973
No 282
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.91 E-value=0.0061 Score=72.15 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=79.7
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----------------
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---------------- 960 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---------------- 960 (1057)
-+++|||||+|++++-+- .+|...|.++|+++.|.+..+.|... .. ...++.+|+.++..
T Consensus 89 ~~~iDLFsGiGGl~lGfe-~aG~~~v~a~Eid~~A~~TY~~N~~~--~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFE-AIGGQCVFTSEWNKHAVRTYKANWYC--DP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred ceEEEeCcCccHHHHHHH-HcCCEEEEEEechHHHHHHHHHHcCC--CC-ccceeccChhhCccccccccchhhhhhhhh
Confidence 479999999999998874 67888899999999999999998521 11 12344555554421
Q ss_pred --CCCccEEEECCCCC---C-h----------------h----HHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHH
Q 036185 961 --KGVANRVCLGLIPT---S-E----------------N----SWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKS 1014 (1057)
Q Consensus 961 --~~~~D~Vil~~~P~---~-~----------------~----~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~ 1014 (1057)
...+|+++.+| |= + + . .+...+++++...--+++-+|++...-.. .....+.
T Consensus 165 ~~~p~~DvL~gGp-PCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~-~g~~f~~ 242 (467)
T PRK10458 165 QHIPDHDVLLAGF-PCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHD-KGKTFRI 242 (467)
T ss_pred ccCCCCCEEEEcC-CCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhccc-ccHHHHH
Confidence 12468888887 61 1 0 0 23455555542344578888987531110 1123556
Q ss_pred HHHHHHhcCCce
Q 036185 1015 IYEIARSEGHRW 1026 (1057)
Q Consensus 1015 i~~~~~~~g~~~ 1026 (1057)
|.+.+++.|+.+
T Consensus 243 i~~~L~~lGY~v 254 (467)
T PRK10458 243 IMQTLDELGYDV 254 (467)
T ss_pred HHHHHHHcCCeE
Confidence 677778889875
No 283
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.75 E-value=0.0033 Score=69.45 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=72.4
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCC----CccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKG----VANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~----~~D~Vi 968 (1057)
..+++.|+|+++|.|.++-.++. .+ ++|+++|+++..++.+++... ...+++++++|+.++-... ....|+
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~-~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~~~~vv 102 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLK-RG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQPLLVV 102 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHH-HS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSSEEEEE
T ss_pred CCCCCEEEEeCCCCccchhhHhc-cc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCCceEEE
Confidence 34789999999999999999984 33 789999999999999998765 2348999999999875422 445788
Q ss_pred ECCCCCChh--HHHHHHHHhhCCCcEEEEEccccc
Q 036185 969 LGLIPTSEN--SWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 969 l~~~P~~~~--~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.|+ |+... .+...+. +. .-|....+-....
T Consensus 103 ~Nl-Py~is~~il~~ll~-~~-~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 103 GNL-PYNISSPILRKLLE-LY-RFGRVRMVLMVQK 134 (262)
T ss_dssp EEE-TGTGHHHHHHHHHH-HG-GGCEEEEEEEEEH
T ss_pred EEe-cccchHHHHHHHhh-cc-cccccceEEEEeh
Confidence 887 87432 2333332 22 3466666666653
No 284
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.70 E-value=0.0012 Score=68.66 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=82.9
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEEC-C
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLG-L 971 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~-~ 971 (1057)
=+++|||+||+|-++.++ +..+.+.++|||+..+++.+.+. ++-+ ...++|+..|++ ..+||+|+.. -
T Consensus 126 F~~~lDLGCGTGL~G~~l--R~~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL--RDMADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhH--HHHHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhH
Confidence 478999999999999775 36688999999999999988763 3322 345667666664 5678988542 1
Q ss_pred C---CCChhHHHHHHHHhhCCCcEEEEEcccccchh------HHHHHHHHHHHHHHHHhcCCce
Q 036185 972 I---PTSENSWVTAVQALRSEGGTLHVHGNVKDSEE------KLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 972 ~---P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
+ ..-...+..+...|. +||.+.++.-.-..+- .....|-..-++..++..|+.+
T Consensus 198 l~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 198 LPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred HHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 2 233666778888887 7998877765443321 0111233346788888899863
No 285
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.013 Score=61.76 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=90.1
Q ss_pred EEEEecCcccHhHHHHHHhCCC--cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc-----CCCCCccEEEEC
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKA--RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT-----APKGVANRVCLG 970 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a--~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~-----~~~~~~D~Vil~ 970 (1057)
++|.++||+|.-..|+++-..- -.|+|+|-+|.|++..++|...+- .++.....|...- +..+..|.|+|-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 7999999999999999843322 479999999999999999988775 2555555554321 124567876553
Q ss_pred -----CCCCChh-HHHHHHHHhhCCCcEEEEEcccccch-h------------------HHH-HHHHHHHHHHHHHhcCC
Q 036185 971 -----LIPTSEN-SWVTAVQALRSEGGTLHVHGNVKDSE-E------------------KLW-AEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 971 -----~~P~~~~-~~~~a~~~l~~~gg~l~~~~~~~~~~-~------------------~~~-~~~~~~~i~~~~~~~g~ 1024 (1057)
..|.-.. .+....++|+ +||.|.+-+....+- + +.. .-=..+.+.++..++|+
T Consensus 152 FvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 2232222 2444445555 899999987654210 0 000 00012456667777776
Q ss_pred ce-eeeeeEEEEeEeecCCceEEEEEEEEe
Q 036185 1025 RW-EVTIEHIERVKWYAPHIRHLVADVGCR 1053 (1057)
Q Consensus 1025 ~~-~~~~~~~~~Vk~~aP~~~h~~~d~~~~ 1053 (1057)
.. +..+ ..+.+-...-+.-++.+.++.+
T Consensus 231 ~~~~~~~-~~rl~vNr~k~lkm~Rvwvq~~ 259 (264)
T KOG2361|consen 231 EEVQLEV-DCRLLVNRKKQLKMYRVWVQAK 259 (264)
T ss_pred chhcccc-eeeeeeehhccCccceEEEEEE
Confidence 53 2222 2333444455555555555544
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.65 E-value=1.3 Score=47.62 Aligned_cols=179 Identities=22% Similarity=0.263 Sum_probs=102.8
Q ss_pred ccEEEEeCCCCc--EEEeccCCCCCCccccE--EEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeeccCCCCC
Q 036185 320 NDLFLLDPLQGT--IKAIHTEGSPSPRLGHT--SSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECSGSVFQ 393 (1057)
Q Consensus 320 ~d~~~yd~~t~~--W~~l~~~~~P~~R~~hs--~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~ 393 (1057)
..+.++|+.+++ |+.- +..+..+.. .+..++++|+..+ ...++.||..+++ |+.-. +.
T Consensus 3 g~l~~~d~~tG~~~W~~~----~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD----LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----PG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEE----CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----SS
T ss_pred CEEEEEECCCCCEEEEEE----CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----cc
Confidence 357788887765 7652 111222333 3447889998843 2579999998875 76543 11
Q ss_pred cccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEE-eecCCCCCCCcceeEEEEECCEEEEEecCCCCcccC
Q 036185 394 PRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKE-LLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALG 470 (1057)
Q Consensus 394 ~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~-~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~ 470 (1057)
+........++.+|+..+. +.++.+|..+++ |+. .......+ ........+.++.+|+... ..
T Consensus 67 -~~~~~~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~g 132 (238)
T PF13360_consen 67 -PISGAPVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS------SG 132 (238)
T ss_dssp -CGGSGEEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET------CS
T ss_pred -cccceeeecccccccccce------eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec------cC
Confidence 1122246778898887621 269999987764 884 43321111 2334445555777777653 34
Q ss_pred cEEEEECCCCe--EEEeeccCCCCCC-----ceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCe--EEE
Q 036185 471 DLYTFDVHACL--WKKEDIAARSPHA-----RFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHI--WKH 534 (1057)
Q Consensus 471 ~l~~yd~~t~~--W~~v~~~~~~P~~-----R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~--W~~ 534 (1057)
.++.+|+.++. |+.....+....+ ......+..++.+|+..+.. .+..+|..+.. |+.
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEE
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEe
Confidence 69999999775 8774211111110 11233333467888876532 26667999987 743
No 287
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.024 Score=59.22 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=70.8
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCc-EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---------CC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKAR-LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---------PK 961 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~-~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---------~~ 961 (1057)
.+.+|.+|+||+|--|+++-.++++.++. .|+|||+.|-.. +. +|.++++|..+.- ..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~-~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IP-GVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CC-CceEEeeeccCccHHHHHHHHcCC
Confidence 45789999999999999999888665543 499999998432 23 4899999987642 13
Q ss_pred CCccEEEECCCCCC--------h-------hHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 962 GVANRVCLGLIPTS--------E-------NSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~--------~-------~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
..+|+|+.|+-|.- . ..+.-|...|+ +||...+-.|..+.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg~~ 164 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQGED 164 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeCCC
Confidence 34699998887732 1 11444555565 79988888887765
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.61 E-value=0.84 Score=49.00 Aligned_cols=182 Identities=22% Similarity=0.323 Sum_probs=105.2
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCc--EEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCC
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGT--IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKS 380 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~--W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~ 380 (1057)
.+|+..+ ...+++||+.+++ |+.-. +.+-.. ..+..++.+|+..+. +.++.+|..+.
T Consensus 38 ~v~~~~~---------~~~l~~~d~~tG~~~W~~~~----~~~~~~-~~~~~~~~v~v~~~~-------~~l~~~d~~tG 96 (238)
T PF13360_consen 38 RVYVASG---------DGNLYALDAKTGKVLWRFDL----PGPISG-APVVDGGRVYVGTSD-------GSLYALDAKTG 96 (238)
T ss_dssp EEEEEET---------TSEEEEEETTTSEEEEEEEC----SSCGGS-GEEEETTEEEEEETT-------SEEEEEETTTS
T ss_pred EEEEEcC---------CCEEEEEECCCCCEEEEeec----cccccc-eeeecccccccccce-------eeeEecccCCc
Confidence 4777732 3579999998876 65432 222222 247778899887621 27999998777
Q ss_pred c--EEE-eeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCC-----CcceeEE
Q 036185 381 K--WTL-LECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPC-----ARHSHSM 450 (1057)
Q Consensus 381 ~--W~~-~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~-----~r~~~s~ 450 (1057)
. |+. .... +........+..+.++.+|+... ...++.+|+.+++ |+.....+.... .......
T Consensus 97 ~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 97 KVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp CEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred ceeeeeccccc-cccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 5 984 4321 11112344445555777777653 3458999998775 766543211111 0112334
Q ss_pred EEECCEEEEEecCCCCcccCcEEEEECCCCe--EEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECC
Q 036185 451 LAYGSRLYMFGGYNGEKALGDLYTFDVHACL--WKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQ 528 (1057)
Q Consensus 451 ~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~ 528 (1057)
+..++.+|+..+.. .+..+|..++. |+.. .. . ........++.+|+.. . ...++++|++
T Consensus 170 ~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~ 230 (238)
T PF13360_consen 170 VISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-S-----DGRLYALDLK 230 (238)
T ss_dssp ECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T-----TTEEEEEETT
T ss_pred EEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-C-----CCEEEEEECC
Confidence 44567888876533 26777999987 8442 11 1 1112344467777765 1 2489999999
Q ss_pred CCe
Q 036185 529 LHI 531 (1057)
Q Consensus 529 ~~~ 531 (1057)
+.+
T Consensus 231 tG~ 233 (238)
T PF13360_consen 231 TGK 233 (238)
T ss_dssp TTE
T ss_pred CCC
Confidence 975
No 289
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.60 E-value=0.0058 Score=63.48 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCEEEEecCcccHhHHHHHHhCC--CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC---------CC--
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAK--ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---------PK-- 961 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~--a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---------~~-- 961 (1057)
++.+|||++|+.|+|+-.++ ..+ +.+|+|+|+.+. .... ++.++++|..+.. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~-~~~~~~~~v~avDl~~~-----------~~~~-~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL-QRGGPAGRVVAVDLGPM-----------DPLQ-NVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH-TSTTTEEEEEEEESSST-----------GS-T-TEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeee-ecccccceEEEEecccc-----------cccc-ceeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999998887 444 578999999997 2223 4677777765421 11
Q ss_pred CCccEEEECCCCCCh---------------hHHHHHHHHhhCCCcEEEEEcccc
Q 036185 962 GVANRVCLGLIPTSE---------------NSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~~---------------~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
..+|+|+.|.-|... ..+..|+..|+ +||.+.+--+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccC
Confidence 579999999855431 11445556666 799777666554
No 290
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.60 E-value=0.0013 Score=61.84 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=41.1
Q ss_pred EEecCcccHhHHHHHHhCC---CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEECCCC
Q 036185 900 VDLFAGIGYFVLPFLVRAK---ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLGLIP 973 (1057)
Q Consensus 900 lDlf~G~G~fsl~~a~~~~---a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~~~P 973 (1057)
|+++++.|..++.+++... ..+++++|..+. .+..+++++..++.++++++++|..+.++ ...+|.|++|- +
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 4677788888877763221 236999999997 55566666667777789999999988765 36799999998 5
Q ss_pred CChhH----HHHHHHHhhCCCcEEEEEcc
Q 036185 974 TSENS----WVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 974 ~~~~~----~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+.... +..+.+.|+ +||+|.+|++
T Consensus 79 H~~~~~~~dl~~~~~~l~-~ggviv~dD~ 106 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLA-PGGVIVFDDY 106 (106)
T ss_dssp --HHHHHHHHHHHGGGEE-EEEEEEEE--
T ss_pred CCHHHHHHHHHHHHHHcC-CCeEEEEeCc
Confidence 55444 444444555 7999999864
No 291
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.55 E-value=0.0034 Score=68.91 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=61.5
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHH-------HHHHHHHHcCCCc-cEEEEeCCccccC--CC
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVE-------ALKHNLQANSVSD-HCIVLEGDNRFTA--PK 961 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~-------~~~~N~~~N~~~~-~v~~~~~D~~~~~--~~ 961 (1057)
++++|+.|+|.|.|+|.|=+++| +-|| .|++-||+-..+. -.+.|.+.-|... -..++.+|...-. ..
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa-~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAA-HFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred ccCCCCEEecCccccCceeeehh-hhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 57899999999999999999988 5565 6999999998887 2445555556432 3456777765532 25
Q ss_pred CCccEEEECCCCCC
Q 036185 962 GVANRVCLGLIPTS 975 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~ 975 (1057)
.+||.||+|| |+.
T Consensus 283 ~~fDaIvcDP-PYG 295 (421)
T KOG2671|consen 283 LKFDAIVCDP-PYG 295 (421)
T ss_pred ceeeEEEeCC-Ccc
Confidence 6799999999 864
No 292
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.14 Score=58.44 Aligned_cols=242 Identities=17% Similarity=0.199 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCC-----CCC--Ccccccc---cccccCCCCCCCcCCCceeeEEEEe
Q 036185 208 DYVRFLVGIANQKLEANSRRIDGFLQAFNFMVGSS-----VSS--KDEHQNC---GDLTKNVDGPPGVPSCGLSVSRIVI 277 (1057)
Q Consensus 208 ~yl~~lv~~~N~~l~~n~~rl~r~~~~l~~~~~~~-----~~s--~~~~~~~---~d~~~~~g~~~~~~~~~l~w~~l~~ 277 (1057)
+-++.+....|+-+...++=+.||++.+++....+ ... ...++.= .++....++|+.-.+..|+=.++.+
T Consensus 121 nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL~tt~~yi~s~s~~Lp~~tl~~ 200 (514)
T KOG2055|consen 121 NRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLLKTTVGYIDSRSKLLPPGTLNI 200 (514)
T ss_pred hhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHHHhhhcccccccccCCCceeee
Confidence 44666666678888888888889999998765431 111 1111111 1233344677664455565555555
Q ss_pred cCCCcCcccccce---EEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcE-EEeccCCCCCCccccEEEEEC
Q 036185 278 AGEPVEKLFLWGH---SACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTI-KAIHTEGSPSPRLGHTSSLIG 353 (1057)
Q Consensus 278 ~~~~~~~~~R~gh---sa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W-~~l~~~~~P~~R~~hs~v~~~ 353 (1057)
..-.-....+..| +++..... ..+++.+|+++ .-.+|..|-.++.- ..+.....|..... ....|
T Consensus 201 krlkDaNa~~ps~~~I~sv~FHp~---~plllvaG~d~------~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G 269 (514)
T KOG2055|consen 201 KRLKDANAAHPSHGGITSVQFHPT---APLLLVAGLDG------TLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNG 269 (514)
T ss_pred EeecccccCCcCcCCceEEEecCC---CceEEEecCCC------cEEEEEecCccChhheeeeeccCccceee--ecCCC
Confidence 4332222223333 33333222 36899999876 34567777666541 12221133332211 11123
Q ss_pred CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEE
Q 036185 354 DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWK 433 (1057)
Q Consensus 354 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~ 433 (1057)
....+++|... -+|.||+.+.+-+++.....++.+-...=.+...+.++++-|..+. ++.+...|+.|-
T Consensus 270 ~~~i~~s~rrk------y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli 338 (514)
T KOG2055|consen 270 HSVIFTSGRRK------YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELI 338 (514)
T ss_pred ceEEEecccce------EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeehhhhhhhh
Confidence 34777777643 5899999999988887544444222222234455667777776553 677777888873
Q ss_pred E-eecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCe
Q 036185 434 E-LLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACL 481 (1057)
Q Consensus 434 ~-~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~ 481 (1057)
. +.. +-.....+....+..||+.||+. .+|++|+.++.
T Consensus 339 ~s~Ki----eG~v~~~~fsSdsk~l~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 339 TSFKI----EGVVSDFTFSSDSKELLASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred heeee----ccEEeeEEEecCCcEEEEEcCCc------eEEEEecCCcc
Confidence 2 222 22223333334445688888753 59999998874
No 293
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.50 E-value=0.0082 Score=61.12 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=59.8
Q ss_pred EEEecCHHHHHHHHHHHHHcC--CCccEEEEeCCccccCC-CCCccEEEECCC----CCChhHHHHHHHHhhCCCcEEEE
Q 036185 923 YACEWNPCAVEALKHNLQANS--VSDHCIVLEGDNRFTAP-KGVANRVCLGLI----PTSENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 923 ~avD~n~~ai~~~~~N~~~N~--~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~----P~~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
.|+|+++.+++.++++.+..+ ...+++++++|+.+... ...||.|++... +.....+.+..++|+ +||.+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEE
Confidence 489999999999988765432 22379999999988753 457999988742 334566888888998 7999999
Q ss_pred Eccccc
Q 036185 996 HGNVKD 1001 (1057)
Q Consensus 996 ~~~~~~ 1001 (1057)
.++...
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 888754
No 294
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.013 Score=62.08 Aligned_cols=127 Identities=23% Similarity=0.251 Sum_probs=79.0
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-C---CCCccEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-P---KGVANRV 967 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~---~~~~D~V 967 (1057)
...+|.++||++|-+|+|+..++ ..||++|||+|..-.-+.+=-+| +.++..++.-....+ + .+.+|.+
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lL-q~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLL-QRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHH-HcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 34689999999999999999998 68999999999976444432221 236666655444433 3 3467999
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEcccc-----c-------chhHHHHHHHHHHHHHHHHhcCCc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK-----D-------SEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~-----~-------~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
++|..=-+-..+..++..+.++++.+..---.. + ......+.+++..+.+.+.+.|+.
T Consensus 149 v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~ 218 (245)
T COG1189 149 VIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQ 218 (245)
T ss_pred EEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcE
Confidence 999833333333344433333565443321110 0 001123566778899999888875
No 295
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.40 E-value=0.0089 Score=59.48 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=68.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHh----CCCcEEEEEecCHHHHHHHHHHHHHcC--CCccEEEEeCCccccCCCCCccEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVR----AKARLVYACEWNPCAVEALKHNLQANS--VSDHCIVLEGDNRFTAPKGVANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~----~~a~~V~avD~n~~ai~~~~~N~~~N~--~~~~v~~~~~D~~~~~~~~~~D~V 967 (1057)
.+...|+|++||-|+++..++.. ....+|++||.|+..++.+.+.++..+ +..+..+..++....... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSS-DPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhccc-CCCeE
Confidence 45779999999999999999830 244579999999999999999988877 545677777776554322 23455
Q ss_pred EECCCCCChhHHHHHHHHhhCC--CcEEEEEcccc
Q 036185 968 CLGLIPTSENSWVTAVQALRSE--GGTLHVHGNVK 1000 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~--gg~l~~~~~~~ 1000 (1057)
++++ ..--..-..+++....+ .+++.+=+|.+
T Consensus 103 ~vgL-HaCG~Ls~~~l~~~~~~~~~~l~~vpCCyh 136 (141)
T PF13679_consen 103 LVGL-HACGDLSDRALRLFIRPNARFLVLVPCCYH 136 (141)
T ss_pred EEEe-ecccchHHHHHHHHHHcCCCEEEEcCCccc
Confidence 5555 43333333344333212 23444455544
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.35 E-value=0.9 Score=53.36 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=112.0
Q ss_pred ccEEEEeCCCCc--EEEeccCCCCC--CccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeecc--CCC
Q 036185 320 NDLFLLDPLQGT--IKAIHTEGSPS--PRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECS--GSV 391 (1057)
Q Consensus 320 ~d~~~yd~~t~~--W~~l~~~~~P~--~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~--g~~ 391 (1057)
..++.||+.+++ |+.-. ..|. .+...+-++.++.+|+..+ + ..++.+|+.+.+ |+.-... +..
T Consensus 170 g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNL--DVPSLTLRGESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred CEEEEEEccCCCEeeeecC--CCCcccccCCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCcc
Confidence 368999999876 76532 2221 1222334455677776433 2 358888988764 8643210 000
Q ss_pred CCc---ccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC
Q 036185 392 FQP---RHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE 466 (1057)
Q Consensus 392 p~~---R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~ 466 (1057)
... ....+.++.++.+|+.+. + ..++.+|+.+++ |+.-.. .. ...+..++.+|+...
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~~~---- 302 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLVDQ---- 302 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEEcC----
Confidence 000 112344567888887652 2 358999998875 876321 11 124567889998753
Q ss_pred cccCcEEEEECCCC--eEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCe--EEEeeccCCCC
Q 036185 467 KALGDLYTFDVHAC--LWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHI--WKHLKLNYVCK 542 (1057)
Q Consensus 467 ~~~~~l~~yd~~t~--~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~--W~~v~~~~~~~ 542 (1057)
-..++.+|+.+. .|+.-. ...+...+.+..++.+|+... ...++++|..+.+ |+.-. ..
T Consensus 303 --~g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~~~~~~~~-~~--- 365 (394)
T PRK11138 303 --NDRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS------EGYLHWINREDGRFVAQQKV-DS--- 365 (394)
T ss_pred --CCeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC------CCEEEEEECCCCCEEEEEEc-CC---
Confidence 245999999876 486521 112223344556888876532 2368889988864 44311 11
Q ss_pred CcccceEEEEeCCEEEEEeCC
Q 036185 543 ELFVRSTANVVDDDLIMIGGG 563 (1057)
Q Consensus 543 ~~~~~~~a~~~~~~iyi~GGg 563 (1057)
. ...++-++.+++||+..-.
T Consensus 366 ~-~~~s~P~~~~~~l~v~t~~ 385 (394)
T PRK11138 366 S-GFLSEPVVADDKLLIQARD 385 (394)
T ss_pred C-cceeCCEEECCEEEEEeCC
Confidence 1 1233445678888876543
No 297
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.23 E-value=0.0077 Score=63.22 Aligned_cols=127 Identities=20% Similarity=0.121 Sum_probs=83.1
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-CCccEEEE----C
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-GVANRVCL----G 970 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~Vil----~ 970 (1057)
-.++||++||||-++-.++ ..-+.+|-.||.++.-++.|++.+..++- ....+++.-..++.|. .+||+|-+ +
T Consensus 56 ~~~alDcGAGIGRVTk~lL-l~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLL-LPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp -SEEEEET-TTTHHHHHTC-CCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred cceEEecccccchhHHHHH-HHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4689999999999998776 34588999999999999999987654222 2467899999999884 68999954 3
Q ss_pred CCCCC--hhHHHHHHHHhhCCCcEEEEEcccccchhHHH------HHHHHHHHHHHHHhcCCc
Q 036185 971 LIPTS--ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLW------AEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 971 ~~P~~--~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~g~~ 1025 (1057)
.+... ..++......|+ ++|+|++-+|....+...+ .-+..+.++++.+++|..
T Consensus 134 hLTD~dlv~fL~RCk~~L~-~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALK-PNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEE-EEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-E
T ss_pred cCCHHHHHHHHHHHHHhCc-CCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCE
Confidence 32322 466888888888 6999999999764321000 001124567777888875
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.21 E-value=1.2 Score=52.26 Aligned_cols=212 Identities=15% Similarity=0.151 Sum_probs=116.6
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCc--EEEeccCC------CCCCccccEEEEECCEEEEEcccCCCCCCCCcEEE
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGT--IKAIHTEG------SPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWV 374 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~--W~~l~~~~------~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 374 (1057)
++|+.+.. ..+++||..+++ |+.-.... .+.++...+.++.++++|+.+. + ..++.
T Consensus 71 ~vy~~~~~---------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~------g~l~a 134 (394)
T PRK11138 71 KVYAADRA---------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K------GQVYA 134 (394)
T ss_pred EEEEECCC---------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C------CEEEE
Confidence 48887642 358999998765 76532110 0011223345667888887432 2 36999
Q ss_pred EECCCCc--EEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCCCcceeEE
Q 036185 375 FNMAKSK--WTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPCARHSHSM 450 (1057)
Q Consensus 375 yd~~t~~--W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~~r~~~s~ 450 (1057)
+|..+.+ |+.-. .+ + ...+.++.++.+|+..+. +.++.||+.+++ |+.-..... ...+...+-
T Consensus 135 ld~~tG~~~W~~~~-~~----~-~~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP 201 (394)
T PRK11138 135 LNAEDGEVAWQTKV-AG----E-ALSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPS-LTLRGESAP 201 (394)
T ss_pred EECCCCCCcccccC-CC----c-eecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCc-ccccCCCCC
Confidence 9998764 86542 11 1 122345567888875332 359999998876 877533110 111222233
Q ss_pred EEECCEEEEEecCCCCcccCcEEEEECCCCe--EEEeeccC--CCCCCc---eeeEEEEECCEEEEEeccCCCCCCCeEE
Q 036185 451 LAYGSRLYMFGGYNGEKALGDLYTFDVHACL--WKKEDIAA--RSPHAR---FSHTMFLYKNYLGLFGGCPVRQNYQELS 523 (1057)
Q Consensus 451 ~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~v~~~~--~~P~~R---~~hs~~~~~~~l~i~GG~~~~~~~~~i~ 523 (1057)
++.++.+|+..+ + ..++.+|+.+.+ |+.....+ .....| ...+-+..++.+|+.+. ...++
T Consensus 202 ~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~------~g~l~ 269 (394)
T PRK11138 202 ATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY------NGNLV 269 (394)
T ss_pred EEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc------CCeEE
Confidence 445666666432 2 358888888764 87521110 000001 11233456888887653 23799
Q ss_pred EEECCCC--eEEEeeccCCCCCcccceEEEEeCCEEEEEeCC
Q 036185 524 LLDLQLH--IWKHLKLNYVCKELFVRSTANVVDDDLIMIGGG 563 (1057)
Q Consensus 524 ~yd~~~~--~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg 563 (1057)
.+|+.+. .|+.-. ... ...+..++.+|+....
T Consensus 270 ald~~tG~~~W~~~~--~~~------~~~~~~~~~vy~~~~~ 303 (394)
T PRK11138 270 ALDLRSGQIVWKREY--GSV------NDFAVDGGRIYLVDQN 303 (394)
T ss_pred EEECCCCCEEEeecC--CCc------cCcEEECCEEEEEcCC
Confidence 9999886 477521 110 1234567888887643
No 299
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.19 E-value=0.018 Score=65.40 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH---------cCCCccEEEEeCCcccc-----CC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA---------NSVSDHCIVLEGDNRFT-----AP 960 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~---------N~~~~~v~~~~~D~~~~-----~~ 960 (1057)
++.+||||+||=|+=-.=.. .++.++++|+|+++.+|+.|++-.+. .+..-...++.+|++.. +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~-~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQ-KAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHH-HTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHH-hcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78999999999998665554 47889999999999999999997722 11112467899998743 22
Q ss_pred -C-CCccEEEECC-CCCC-------hhHHHHHHHHhhCCCcEEEEEcc
Q 036185 961 -K-GVANRVCLGL-IPTS-------ENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 961 -~-~~~D~Vil~~-~P~~-------~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
. ..||+|-+-. +.++ ...+..+...|+ +||+++--..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEec
Confidence 2 4799997643 1222 223555666666 7997665544
No 300
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.14 Score=52.71 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=90.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vi 968 (1057)
+++|+.||=|+|-+|+-.-+.+-..+...|||||.+|.....+..=++. ..|+.++.+||+..-. -+..|+|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccEEE
Confidence 4789999999999999998888666766799999999999888776655 3479999999987432 24579999
Q ss_pred ECCC-CCChhH-HHHHHHHhhCCCcEEEEEcccccchh-HHHHHHHHH-HHHHHHHhcCCceeeeeeEEEEeEeecCCce
Q 036185 969 LGLI-PTSENS-WVTAVQALRSEGGTLHVHGNVKDSEE-KLWAEHVSK-SIYEIARSEGHRWEVTIEHIERVKWYAPHIR 1044 (1057)
Q Consensus 969 l~~~-P~~~~~-~~~a~~~l~~~gg~l~~~~~~~~~~~-~~~~~~~~~-~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~ 1044 (1057)
.|-- |.-+.. ...|-..|+ +||.+.+.--....+. .++ +++.+ .+.. .++.+++ +..+-....|--...
T Consensus 151 ~DVAQp~Qa~I~~~Na~~FLk-~~G~~~i~iKArSIdvT~dp-~~vf~~ev~k-L~~~~f~----i~e~~~LePye~DH~ 223 (231)
T COG1889 151 QDVAQPNQAEILADNAEFFLK-KGGYVVIAIKARSIDVTADP-EEVFKDEVEK-LEEGGFE----ILEVVDLEPYEKDHA 223 (231)
T ss_pred EecCCchHHHHHHHHHHHhcc-cCCeEEEEEEeecccccCCH-HHHHHHHHHH-HHhcCce----eeEEeccCCcccceE
Confidence 8851 222232 344445566 5774444433332222 122 33333 3433 3444543 333333445544444
Q ss_pred EEEEE
Q 036185 1045 HLVAD 1049 (1057)
Q Consensus 1045 h~~~d 1049 (1057)
.++++
T Consensus 224 ~i~~~ 228 (231)
T COG1889 224 LIVAK 228 (231)
T ss_pred EEEEe
Confidence 44443
No 301
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.10 E-value=0.022 Score=58.94 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCCEEEEecCcccHhHHHHHHhC--CCcEEEEEecCHHHHHHHHHHHHHcCC----------------------------
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRA--KARLVYACEWNPCAVEALKHNLQANSV---------------------------- 944 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~--~a~~V~avD~n~~ai~~~~~N~~~N~~---------------------------- 944 (1057)
..-+++|.+||.||+--.++... .-+.|+|-|+|++|++++++|+.+-..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34479999999999865544323 346899999999999999999765432
Q ss_pred -------------CccEEEEeCCccccC-----C-CCCccEEEECCCCCChh----------H---HHHHHHHhhCCCcE
Q 036185 945 -------------SDHCIVLEGDNRFTA-----P-KGVANRVCLGLIPTSEN----------S---WVTAVQALRSEGGT 992 (1057)
Q Consensus 945 -------------~~~v~~~~~D~~~~~-----~-~~~~D~Vil~~~P~~~~----------~---~~~a~~~l~~~gg~ 992 (1057)
..-..+.+.|+++.- . ...+|+|+.|+ |+... - +..++..+.+.+++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDl-PYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDL-PYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE---CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecC-CCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 012447778877732 1 33479999998 86421 1 23333333366788
Q ss_pred EEEEc
Q 036185 993 LHVHG 997 (1057)
Q Consensus 993 l~~~~ 997 (1057)
|.+..
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88833
No 302
>PRK00536 speE spermidine synthase; Provisional
Probab=96.05 E-value=0.29 Score=53.68 Aligned_cols=131 Identities=7% Similarity=-0.102 Sum_probs=86.3
Q ss_pred eCCEEEEEecceeEeeCCCHHHHHHHhhc----cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH
Q 036185 864 ENGILYSFDATKCMFSWGNLSEKLRMARL----DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL 939 (1057)
Q Consensus 864 e~gi~~~~d~~~~~f~~~~~~er~r~~~~----~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~ 939 (1057)
..|--+.+| ...+-.....-.+..++-. -.+-++||=++.|-|+-.-.+++.. .+|+.||+++..++.+++-.
T Consensus 38 ~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~l 114 (262)
T PRK00536 38 DFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFF 114 (262)
T ss_pred ccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHC
Confidence 346666777 3222122222233344332 1456899999999999999999543 48999999999999999922
Q ss_pred HH-c-CCC-ccEEEEeCCccccCCCCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 940 QA-N-SVS-DHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 940 ~~-N-~~~-~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
-. . .++ .|++++.. ..+ ...++||+||+|.++ ...+.....++|+ +||++....-+..
T Consensus 115 P~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs~~-~~~fy~~~~~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 115 PHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQEP-DIHKIDGLKRMLK-EDGVFISVAKHPL 175 (262)
T ss_pred HHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcCCC-ChHHHHHHHHhcC-CCcEEEECCCCcc
Confidence 11 1 233 36777652 211 113579999999644 3666777778887 7999999876654
No 303
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.01 E-value=0.051 Score=54.21 Aligned_cols=106 Identities=21% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHhhcc--CCCCEEEEecCcccHhHHHHHHhCCC--cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC----
Q 036185 888 RMARLD--CKDEVIVDLFAGIGYFVLPFLVRAKA--RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA---- 959 (1057)
Q Consensus 888 r~~~~~--~~g~~VlDlf~G~G~fsl~~a~~~~a--~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~---- 959 (1057)
+|+..+ ..|.-||+++.|+|.|+-.++ +.|. ..++++|.|++-+..+.+- .. .+.+++||+++.-
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL-~~gv~~~~L~~iE~~~dF~~~L~~~-----~p-~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAIL-SRGVRPESLTAIEYSPDFVCHLNQL-----YP-GVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHH-hcCCCccceEEEEeCHHHHHHHHHh-----CC-CccccccchhhHHHHHh
Confidence 444443 457789999999999999988 4453 4699999999999887663 23 4678999998764
Q ss_pred --CCCCccEEEECCCCCC-------hhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 960 --PKGVANRVCLGLIPTS-------ENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 960 --~~~~~D~Vil~~~P~~-------~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+...||.||.++ |-. ...++.++..|. .||-++-....+-+
T Consensus 112 e~~gq~~D~viS~l-Pll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp~s 161 (194)
T COG3963 112 EHKGQFFDSVISGL-PLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGPLS 161 (194)
T ss_pred hcCCCeeeeEEecc-ccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecCCC
Confidence 145799999987 532 223555555555 69988877777644
No 304
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.94 E-value=0.019 Score=69.09 Aligned_cols=99 Identities=21% Similarity=0.163 Sum_probs=71.9
Q ss_pred EeeCCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCC----CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe
Q 036185 877 MFSWGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAK----ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE 952 (1057)
Q Consensus 877 ~f~~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~----a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~ 952 (1057)
||.|+...+-..-+-...+.++|+|..||+|+|=+.+++..+ -...++.|+|+..+.+++-|+-++++...+....
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 455665544322222234778999999999999988875433 1459999999999999999999999974456677
Q ss_pred CCccccCC------CCCccEEEECCCCCCh
Q 036185 953 GDNRFTAP------KGVANRVCLGLIPTSE 976 (1057)
Q Consensus 953 ~D~~~~~~------~~~~D~Vil~~~P~~~ 976 (1057)
+|...-.. ...||.|+.|| |.+.
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNP-Pf~~ 276 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANP-PFSG 276 (489)
T ss_pred cccccCCcccccCCccceeEEEeCC-CCCc
Confidence 77554432 24699999999 8763
No 305
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.91 E-value=0.012 Score=63.01 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=33.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHH
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKH 937 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~ 937 (1057)
..+|+.|||.|||+|+-++++. .. ..+.+++|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~-~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAE-EL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHH-HT-T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHH-Hc-CCeEEEEeCCHHHHHHhcC
Confidence 4789999999999999998776 33 4569999999999999875
No 306
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.91 E-value=0.082 Score=55.08 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=79.7
Q ss_pred CCCHHHHHHHhhccCC--CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc
Q 036185 880 WGNLSEKLRMARLDCK--DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF 957 (1057)
Q Consensus 880 ~~~~~er~r~~~~~~~--g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~ 957 (1057)
+-...+|...+..+.+ ...|||++||+|--+-.+. ..| ...+++|++|.+++.+.+ -+ +++ .++.+|.-+
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~-~~G-h~wiGvDiSpsML~~a~~-~e---~eg--dlil~DMG~ 104 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLS-DSG-HQWIGVDISPSMLEQAVE-RE---LEG--DLILCDMGE 104 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheec-cCC-ceEEeecCCHHHHHHHHH-hh---hhc--CeeeeecCC
Confidence 4444555544443433 5689999999999886554 334 679999999999999987 22 222 457778776
Q ss_pred cCC--CCCccEEEE--------CCCCCC-------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHH
Q 036185 958 TAP--KGVANRVCL--------GLIPTS-------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIAR 1020 (1057)
Q Consensus 958 ~~~--~~~~D~Vil--------~~~P~~-------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1020 (1057)
-++ .+.||-||. |-.++. ..|+..-..+|+ .|+.-++ .+.++. ++-++.|...|.
T Consensus 105 GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~-QfYpen------~~q~d~i~~~a~ 176 (270)
T KOG1541|consen 105 GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVL-QFYPEN------EAQIDMIMQQAM 176 (270)
T ss_pred CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhc-cCceeEE-Eecccc------hHHHHHHHHHHH
Confidence 665 567887653 322222 233444555565 4654322 222322 233677888888
Q ss_pred hcCCc
Q 036185 1021 SEGHR 1025 (1057)
Q Consensus 1021 ~~g~~ 1025 (1057)
.+|+.
T Consensus 177 ~aGF~ 181 (270)
T KOG1541|consen 177 KAGFG 181 (270)
T ss_pred hhccC
Confidence 88864
No 307
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.91 E-value=0.014 Score=65.93 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=67.7
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC--CCccEEEECCCCC-
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK--GVANRVCLGLIPT- 974 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~--~~~D~Vil~~~P~- 974 (1057)
.|||+++|+|-+++-|+ ++||..|+|+|.=..+++++++=...|+..++|.+|+.-.-++-.. -.+|+++--.+-+
T Consensus 69 ~vLdigtGTGLLSmMAv-ragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAV-RAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEccCCccHHHHHHH-HhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 58999999999998876 7889999999999999999999999999999999887665554321 1244333211111
Q ss_pred -----ChhHHHHHHHHhhCCCc
Q 036185 975 -----SENSWVTAVQALRSEGG 991 (1057)
Q Consensus 975 -----~~~~~~~a~~~l~~~gg 991 (1057)
..+++..|.+.|..++.
T Consensus 148 ligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 148 LIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhccccchhHHHHHHHhcccCC
Confidence 12346777777754443
No 308
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.035 Score=53.86 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=78.3
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCCCCh
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSE 976 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P~~~ 976 (1057)
.+.+|+++|-|-+-+.++ +.|+...+++|+||+-+.+.+-.+-..++.....|..-|..++--+.--.+||.+- |+-.
T Consensus 74 GklvDlGSGDGRiVlaaa-r~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga-es~m 151 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAA-RCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA-ESVM 151 (199)
T ss_pred CcEEeccCCCceeehhhh-hhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh-HHHH
Confidence 468999999999999988 56677789999999999999999999999878889998888764333224566665 7767
Q ss_pred hHHHHHHHHhhCCCcEEEEEccc
Q 036185 977 NSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 977 ~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+.+..-++.--+.+..+.-.-|-
T Consensus 152 ~dLe~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 152 PDLEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred hhhHHHHHhhCcCCCeEEEEecC
Confidence 77777777554566666655553
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.87 E-value=2.2 Score=49.72 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=108.1
Q ss_pred ccEEEEeCCCCc--EEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeecc--CCCCC
Q 036185 320 NDLFLLDPLQGT--IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECS--GSVFQ 393 (1057)
Q Consensus 320 ~d~~~yd~~t~~--W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~--g~~p~ 393 (1057)
..++.+|+.+++ |+.-...+....+...+.+..++.+| +|..+ ..++.+|+.+.+ |+.-... +....
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCch
Confidence 358999998765 76432111101122234455566655 44322 268899988764 7643210 00000
Q ss_pred cc---cceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcc
Q 036185 394 PR---HRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKA 468 (1057)
Q Consensus 394 ~R---~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~ 468 (1057)
.+ ...+.++.++.+|+.+. + ..++.||+.+++ |+.-.. ...+.+..++.+|+...
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~~--------~~~~p~~~~~~vyv~~~------ 287 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDAS--------SYQGPAVDDNRLYVTDA------ 287 (377)
T ss_pred hhhhccCCccEEECCEEEEEEc-C-----CEEEEEECCCCcEEEeeccC--------CccCceEeCCEEEEECC------
Confidence 01 12334456778887542 2 358999998764 765311 12234466888888642
Q ss_pred cCcEEEEECCCC--eEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCe--EEEeeccCCCCCc
Q 036185 469 LGDLYTFDVHAC--LWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHI--WKHLKLNYVCKEL 544 (1057)
Q Consensus 469 ~~~l~~yd~~t~--~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~--W~~v~~~~~~~~~ 544 (1057)
-..++.+|..+. .|+... ++ .+...+.+..++.+|+.. ....++++|..+.+ |+. +... .
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~----~~-~~~~ssp~i~g~~l~~~~------~~G~l~~~d~~tG~~~~~~-~~~~----~ 351 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDE----LK-YRQLTAPAVVGGYLVVGD------FEGYLHWLSREDGSFVARL-KTDG----S 351 (377)
T ss_pred CCeEEEEECCCCcEEEcccc----cc-CCccccCEEECCEEEEEe------CCCEEEEEECCCCCEEEEE-EcCC----C
Confidence 235999999875 487521 11 122223345677777643 12368899987653 432 2111 0
Q ss_pred ccceEEEEeCCEEEEEeCCCc
Q 036185 545 FVRSTANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 545 ~~~~~a~~~~~~iyi~GGg~~ 565 (1057)
....+.+..++++|+.+..+.
T Consensus 352 ~~~~sp~~~~~~l~v~~~dG~ 372 (377)
T TIGR03300 352 GIASPPVVVGDGLLVQTRDGD 372 (377)
T ss_pred ccccCCEEECCEEEEEeCCce
Confidence 123344567888887665433
No 310
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.68 E-value=0.098 Score=54.60 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=72.7
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
.++-+|.|++||-+.++-.+ .....|+..|+... | +. ++.+|...++- ....|++|.-+.
T Consensus 71 ~~~~viaD~GCGdA~la~~~---~~~~~V~SfDLva~-----------n---~~--Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV---PNKHKVHSFDLVAP-----------N---PR--VTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH-----S---EEEEESS-S-----------S---TT--EEES-TTS-S--TT-EEEEEEES-
T ss_pred CCCEEEEECCCchHHHHHhc---ccCceEEEeeccCC-----------C---CC--EEEecCccCcCCCCceeEEEEEhh
Confidence 44679999999999999432 22335999999752 2 22 46688766543 567899987662
Q ss_pred C--C-ChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEeEeecCCceEEEEE
Q 036185 973 P--T-SENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVAD 1049 (1057)
Q Consensus 973 P--~-~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~Vk~~aP~~~h~~~d 1049 (1057)
- + ...++.+|.|+|+ +||.|.+.+...--+. .+.+.+..+..|+++ +..-....+.+.++
T Consensus 132 LMGTn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~-------~~~F~~~~~~~GF~~---------~~~d~~n~~F~~f~ 194 (219)
T PF05148_consen 132 LMGTNWPDFIREANRVLK-PGGILKIAEVKSRFEN-------VKQFIKALKKLGFKL---------KSKDESNKHFVLFE 194 (219)
T ss_dssp --SS-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S--------HHHHHHHHHCTTEEE---------EEEE--STTEEEEE
T ss_pred hhCCCcHHHHHHHHheec-cCcEEEEEEecccCcC-------HHHHHHHHHHCCCeE---------EecccCCCeEEEEE
Confidence 2 1 2677999999999 7999999998653321 233444456667643 23345577888888
Q ss_pred EEEe
Q 036185 1050 VGCR 1053 (1057)
Q Consensus 1050 ~~~~ 1053 (1057)
|+=.
T Consensus 195 F~K~ 198 (219)
T PF05148_consen 195 FKKI 198 (219)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 8643
No 311
>PRK13699 putative methylase; Provisional
Probab=95.57 E-value=0.026 Score=60.82 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=40.7
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN 942 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N 942 (1057)
...+|+.|||.|||+|..++.+. +. ..+.+++|++|+.++.+++.++.-
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~-~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAAL-QS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHH-Hc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 35689999999999999998776 34 446899999999999998877653
No 312
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.57 E-value=0.055 Score=60.48 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=68.3
Q ss_pred CCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC
Q 036185 880 WGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA 959 (1057)
Q Consensus 880 ~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~ 959 (1057)
|.+..|-...+. ..+|.+++|.=+|-|+-+..++...+..+|+|+|.+|.|++.+++.++.. .+++.+++++-.++.
T Consensus 6 pVll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 6 SVLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFF 82 (305)
T ss_pred chhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHH
Confidence 334444333332 35788999999999999999985543467999999999999999987643 458999999876653
Q ss_pred C------CCCccEEEECCCC
Q 036185 960 P------KGVANRVCLGLIP 973 (1057)
Q Consensus 960 ~------~~~~D~Vil~~~P 973 (1057)
. ...+|.|++|+=.
T Consensus 83 ~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHhcCCCcccEEEEeccC
Confidence 2 2358999999833
No 313
>PRK11524 putative methyltransferase; Provisional
Probab=95.57 E-value=0.023 Score=63.57 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHhhc-cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHH
Q 036185 888 RMARL-DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQA 941 (1057)
Q Consensus 888 r~~~~-~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~ 941 (1057)
+++.. -.+|++|||.|+|+|+-+++|. +. ..+.+|+|++++.++.+++-+..
T Consensus 200 rlI~~~S~~GD~VLDPF~GSGTT~~AA~-~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 200 RIILASSNPGDIVLDPFAGSFTTGAVAK-AS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHH-Hc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34443 4689999999999999998776 34 45699999999999999998753
No 314
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.56 E-value=0.062 Score=57.61 Aligned_cols=109 Identities=10% Similarity=0.058 Sum_probs=80.4
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---CCCccEEEECCC
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP---KGVANRVCLGLI 972 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~---~~~~D~Vil~~~ 972 (1057)
|+.|+-++ ----+||++|...-+++|..||++..-+....+=++.-|++ +++.+.-|.++.+| ..+||+.+.||
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~~~kFDvfiTDP- 229 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDLKRKFDVFITDP- 229 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHHHhhCCeeecCc-
Confidence 55566555 44567788775456889999999999999999999999997 69999999999988 56899999999
Q ss_pred CCC----hhHHHHHHHHhhCCCcEEEEEcccccchhHHH
Q 036185 973 PTS----ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLW 1007 (1057)
Q Consensus 973 P~~----~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~ 1007 (1057)
|.. ..++...+..|+..|+-=+++-...+.+...|
T Consensus 230 peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW 268 (354)
T COG1568 230 PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKW 268 (354)
T ss_pred hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHH
Confidence 654 34567777888855432233333334444445
No 315
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.51 E-value=0.85 Score=52.48 Aligned_cols=116 Identities=16% Similarity=0.329 Sum_probs=74.2
Q ss_pred ECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcc-------cceEEE
Q 036185 352 IGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTI-------FSSLHV 424 (1057)
Q Consensus 352 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~-------~~~v~~ 424 (1057)
.+++|+..+.. ....+||+.+..-...+ .++.+.....++.++++||++........ .-++..
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48899988654 34889999998777555 45566666677788999999987643211 222333
Q ss_pred EE--------CCCCcEEEeecCCCCCCCcc-------eeEEEEE-CCEEEE-EecCCCCcccCcEEEEECCCCeEEEe
Q 036185 425 LD--------TDTLQWKELLINGEGPCARH-------SHSMLAY-GSRLYM-FGGYNGEKALGDLYTFDVHACLWKKE 485 (1057)
Q Consensus 425 yD--------~~t~~W~~~~~~g~~P~~r~-------~~s~~~~-~~~lyv-~GG~~~~~~~~~l~~yd~~t~~W~~v 485 (1057)
|+ .....|+.+++. |..+. -.+.+++ +..|+| .-|.. ...|.||..+.+|+++
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH 214 (342)
T ss_pred cccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec
Confidence 44 234467777552 22221 2233444 667888 43321 2389999999999997
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.19 E-value=4.5 Score=47.03 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=105.0
Q ss_pred cEEEEeCCCCc--EEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeeccCCCCCccc
Q 036185 321 DLFLLDPLQGT--IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECSGSVFQPRH 396 (1057)
Q Consensus 321 d~~~yd~~t~~--W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~ 396 (1057)
.+++||+.+++ |+.-- +.. ...+.++.++.+|+.+ .+ ..++.+|..+++ |+.-. +.. .
T Consensus 76 ~v~a~d~~tG~~~W~~~~----~~~-~~~~p~v~~~~v~v~~-~~------g~l~ald~~tG~~~W~~~~-----~~~-~ 137 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDL----DER-LSGGVGADGGLVFVGT-EK------GEVIALDAEDGKELWRAKL-----SSE-V 137 (377)
T ss_pred eEEEEEccCCcEeeeecC----CCC-cccceEEcCCEEEEEc-CC------CEEEEEECCCCcEeeeecc-----Cce-e
Confidence 58999988775 76422 211 1223344567777643 22 369999987764 86542 111 1
Q ss_pred ceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEE
Q 036185 397 RHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYT 474 (1057)
Q Consensus 397 ~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~ 474 (1057)
..+.++.++.+|+..+ ...++.+|+.+++ |+....... ...+...+.+..++.+| +|..+ ..++.
T Consensus 138 ~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~~-----g~v~a 204 (377)
T TIGR03300 138 LSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFAG-----GKLVA 204 (377)
T ss_pred ecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECCC-----CEEEE
Confidence 2233445777777533 2348999998764 775432110 01122233455566554 44332 25889
Q ss_pred EECCCC--eEEEeeccCC--CCCCc---eeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCC--eEEEeeccCCCCCcc
Q 036185 475 FDVHAC--LWKKEDIAAR--SPHAR---FSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLH--IWKHLKLNYVCKELF 545 (1057)
Q Consensus 475 yd~~t~--~W~~v~~~~~--~P~~R---~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~--~W~~v~~~~~~~~~~ 545 (1057)
+|+.+. .|+.-...+. ....+ ...+.+..++.+|+... ...++.||+++. .|+.-. .
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~--~------ 270 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRDA--S------ 270 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeecc--C------
Confidence 998775 4865211100 00011 11233445777777542 236999999875 465521 0
Q ss_pred cceEEEEeCCEEEEEeC
Q 036185 546 VRSTANVVDDDLIMIGG 562 (1057)
Q Consensus 546 ~~~~a~~~~~~iyi~GG 562 (1057)
...+.++.++++|+...
T Consensus 271 ~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 271 SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred CccCceEeCCEEEEECC
Confidence 11233456788887653
No 317
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.05 E-value=0.054 Score=59.43 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=79.6
Q ss_pred hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC--CC---ccEEEEeCCccccC------
Q 036185 891 RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS--VS---DHCIVLEGDNRFTA------ 959 (1057)
Q Consensus 891 ~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~--~~---~~v~~~~~D~~~~~------ 959 (1057)
...++++.|+||+||-|+=-+-.- ++|...++++||...+|+.+++-.+.-. .+ =.+.|+.+|++...
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~-kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWD-KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred HHhccccccceeccCCcccHhHhh-hhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 345789999999999999988776 6888999999999999999998554221 11 13789999987532
Q ss_pred -CCCCccEEEECCCC-CC-------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHH
Q 036185 960 -PKGVANRVCLGLIP-TS-------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEI 1018 (1057)
Q Consensus 960 -~~~~~D~Vil~~~P-~~-------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~ 1018 (1057)
+..+||+|-+-..- ++ ...+..+...|+ +||+. ....++. +.++.++++.
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~F--IgTiPds------d~Ii~rlr~~ 250 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVF--IGTIPDS------DVIIKRLRAG 250 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEE--EEecCcH------HHHHHHHHhc
Confidence 13348988543211 11 223666677777 79954 4455554 3345555554
No 318
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.69 E-value=1.8 Score=48.17 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE-CCEEEEEcccCCCc-ccceEEEEECCCCcEEEeecC--CCCCC
Q 036185 368 ILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI-GSKIYVFGGLNNDT-IFSSLHVLDTDTLQWKELLIN--GEGPC 443 (1057)
Q Consensus 368 ~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~-~~~iyv~GG~~~~~-~~~~v~~yD~~t~~W~~~~~~--g~~P~ 443 (1057)
.+..+..||+.+.+|..+.. - ..-.-.+.... ++++|+.|-..-.. ....+-.||..+.+|+.+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 47889999999999998852 1 11112233333 67788877655433 456789999999999998773 34666
Q ss_pred CcceeEEEEEC-CEEEEEecCCCCcccCcEEEEECCCCeEEEeec
Q 036185 444 ARHSHSMLAYG-SRLYMFGGYNGEKALGDLYTFDVHACLWKKEDI 487 (1057)
Q Consensus 444 ~r~~~s~~~~~-~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~ 487 (1057)
+.........+ +.+++.|... ....-+..| ...+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 65333333333 4588777652 223446666 4678998744
No 319
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.24 E-value=0.16 Score=54.63 Aligned_cols=76 Identities=21% Similarity=0.158 Sum_probs=54.3
Q ss_pred ccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEE
Q 036185 892 LDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCL 969 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil 969 (1057)
.+..-.+|+|+.||-=+|+++.........++|+|||...++.+..=+..-++. ..+...|...-.+....|+.++
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHTTSEESEEEE
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCCCCCcchhhH
Confidence 344467999999999999999873332347999999999999999998888875 5556667766655666888654
No 320
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.10 E-value=0.16 Score=54.37 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCC--CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH---HHcC-C----CccEEEEeCCccccCC--C
Q 036185 894 CKD--EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL---QANS-V----SDHCIVLEGDNRFTAP--K 961 (1057)
Q Consensus 894 ~~g--~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~---~~N~-~----~~~v~~~~~D~~~~~~--~ 961 (1057)
++| .+|||+=+|-|.=|+.+| ..|+ +|+++|-||.....++..+ ..+. . ..+++++++|..+++. .
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA-~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLA-SLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD 149 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHH-HHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred CCCCCCEEEECCCcchHHHHHHH-ccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence 444 389999999999999887 4576 5999999998877776543 3322 1 1489999999999986 4
Q ss_pred CCccEEEECCC
Q 036185 962 GVANRVCLGLI 972 (1057)
Q Consensus 962 ~~~D~Vil~~~ 972 (1057)
..+|+|.+||.
T Consensus 150 ~s~DVVY~DPM 160 (234)
T PF04445_consen 150 NSFDVVYFDPM 160 (234)
T ss_dssp S--SEEEE--S
T ss_pred CCCCEEEECCC
Confidence 57999999984
No 321
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.08 E-value=1.6 Score=50.13 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=73.4
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCC------CCcEEEEE
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNI------LSDVWVFN 376 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~------~~~v~~yd 376 (1057)
+|+..++. ..+.+||..+..-...+ .++.+...-.++.++++||++......... .-++..|+
T Consensus 78 kIv~~d~~---------~~t~vyDt~t~av~~~P--~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 78 KIVAVDQS---------GRTLVYDTDTRAVATGP--RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred eEEEEcCC---------CCeEEEECCCCeEeccC--CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 58887663 34899999998877665 566666666788889999999876432111 11233344
Q ss_pred C--------CCCcEEEeeccCCCCCccc-------ceEEEEE-CCEEEE-EcccCCCcccceEEEEECCCCcEEEeec
Q 036185 377 M--------AKSKWTLLECSGSVFQPRH-------RHAAAVI-GSKIYV-FGGLNNDTIFSSLHVLDTDTLQWKELLI 437 (1057)
Q Consensus 377 ~--------~t~~W~~~~~~g~~p~~R~-------~hsa~~~-~~~iyv-~GG~~~~~~~~~v~~yD~~t~~W~~~~~ 437 (1057)
+ ..-.|..++ ++|-.+. -.+.+++ +.+|+| .-|.. ...|.||+.+.+|++...
T Consensus 147 ~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 2 223577765 3332222 2344555 667888 33322 238999999999999844
No 322
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.06 E-value=0.23 Score=51.99 Aligned_cols=132 Identities=11% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCC-EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-C--------CCC
Q 036185 894 CKDE-VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-P--------KGV 963 (1057)
Q Consensus 894 ~~g~-~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~--------~~~ 963 (1057)
.+.. +||++.||+|--+..+|...---.=.--|.++.....++.-+...++.+-..++.-|+..-. + ...
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 59999999999999998654444566779999999999998888888743456777776541 1 236
Q ss_pred ccEEEECCCCCC------hhHHHHHHHHhhCCCcEEEEEcccccc------hhHHHHHHH-----------HHHHHHHHH
Q 036185 964 ANRVCLGLIPTS------ENSWVTAVQALRSEGGTLHVHGNVKDS------EEKLWAEHV-----------SKSIYEIAR 1020 (1057)
Q Consensus 964 ~D~Vil~~~P~~------~~~~~~a~~~l~~~gg~l~~~~~~~~~------~~~~~~~~~-----------~~~i~~~~~ 1020 (1057)
+|.|+.-..-+- ...+..|.++|+ +||.|.+|+--... ....|...+ ++.+.++|.
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~ 181 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAA 181 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHH
Confidence 898876432221 455888888888 79999999864321 111121111 236778888
Q ss_pred hcCCce
Q 036185 1021 SEGHRW 1026 (1057)
Q Consensus 1021 ~~g~~~ 1026 (1057)
+.|...
T Consensus 182 ~~GL~l 187 (204)
T PF06080_consen 182 AHGLEL 187 (204)
T ss_pred HCCCcc
Confidence 888763
No 323
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.53 E-value=0.12 Score=57.55 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CEEEEecCccc--HhHHHHHHhC--C----CcEEEEEecCHHHHHHHHHHHHH-----------------------cC--
Q 036185 897 EVIVDLFAGIG--YFVLPFLVRA--K----ARLVYACEWNPCAVEALKHNLQA-----------------------NS-- 943 (1057)
Q Consensus 897 ~~VlDlf~G~G--~fsl~~a~~~--~----a~~V~avD~n~~ai~~~~~N~~~-----------------------N~-- 943 (1057)
=+|+...|.+| ++||+++..- + .-+|+|.|+|+.|++.|++.+-. .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 48999999999 5666655221 1 13699999999999999986300 01
Q ss_pred -----CCccEEEEeCCccccC--CCCCccEEEE-CCCCCC-----hhHHHHHHHHhhCCCcEEEEEc
Q 036185 944 -----VSDHCIVLEGDNRFTA--PKGVANRVCL-GLIPTS-----ENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 944 -----~~~~v~~~~~D~~~~~--~~~~~D~Vil-~~~P~~-----~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
+...|.|.+.|..+.. +...||+|++ |.+-++ ...+....+.|+ +||+|.+-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 2356788888887632 2467999988 222333 344666666777 799886654
No 324
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.47 E-value=1.9 Score=48.01 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=70.1
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCEEEEEecCCCCc-ccCcEEEEECCCCeEEEeecc--CCCCC
Q 036185 418 IFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAY-GSRLYMFGGYNGEK-ALGDLYTFDVHACLWKKEDIA--ARSPH 493 (1057)
Q Consensus 418 ~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~-~~~lyv~GG~~~~~-~~~~l~~yd~~t~~W~~v~~~--~~~P~ 493 (1057)
....+..||+.+.+|+.+... -.. .-.++... +++||+.|-.+-.. ....+-.||.++.+|+.+... ...|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 478899999999999998652 111 12233333 67788887654333 455689999999999987552 23455
Q ss_pred CceeeEEEEE-CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeec
Q 036185 494 ARFSHTMFLY-KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKL 537 (1057)
Q Consensus 494 ~R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~ 537 (1057)
+-........ .+.+++.|.. .....-+..| ...+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 5422222222 3457777764 2223345555 6779998875
No 325
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.37 E-value=0.8 Score=49.04 Aligned_cols=104 Identities=17% Similarity=0.103 Sum_probs=71.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
-....+|.|++||-+-++. ..-..|++.|+-+ + +-.++.+|.+++.- .+..|++|.-+
T Consensus 178 r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a--------------~--~~~V~~cDm~~vPl~d~svDvaV~CL 236 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA--------------V--NERVIACDMRNVPLEDESVDVAVFCL 236 (325)
T ss_pred CcCceEEEecccchhhhhh-----ccccceeeeeeec--------------C--CCceeeccccCCcCccCcccEEEeeH
Confidence 3456789999999998874 2234599998854 2 23457788887543 56789988765
Q ss_pred C--C-CChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 972 I--P-TSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 972 ~--P-~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
. . ....++.+|.|+|+ +||.|++-+...-.. + ...+.++...+|+.
T Consensus 237 SLMgtn~~df~kEa~RiLk-~gG~l~IAEv~SRf~------d-v~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 237 SLMGTNLADFIKEANRILK-PGGLLYIAEVKSRFS------D-VKGFVRALTKLGFD 285 (325)
T ss_pred hhhcccHHHHHHHHHHHhc-cCceEEEEehhhhcc------c-HHHHHHHHHHcCCe
Confidence 2 1 12677999999998 799999988764321 1 12355566778875
No 326
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=0.12 Score=52.48 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=64.3
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC-Ccc---------ccCCC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG-DNR---------FTAPK 961 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~-D~~---------~~~~~ 961 (1057)
+.++++|||++|-.|..+..+-.+.+ ...|.+||+-+-. -+.+ +.++++ |+. +.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 45799999999999999987764442 4579999985421 1222 445555 543 34456
Q ss_pred CCccEEEECCCCCChhH---------------HHHHHHHhhCCCcEEEEEcccccc
Q 036185 962 GVANRVCLGLIPTSENS---------------WVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~~~~---------------~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
...|+|+-|..|..... +.-|+..+. ++|.+.+-.+..++
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEEEEecCCc
Confidence 67899999988865221 334444455 68888777776654
No 327
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.23 E-value=12 Score=43.98 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=79.5
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceE
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hs 399 (1057)
..++++|+.++....+. ..+......+....+..+++.....+ ..++|.+|+.+.....+....... . ..
T Consensus 214 ~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~---~-~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGID---T-EP 283 (417)
T ss_pred cEEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCC---C-CE
Confidence 57999999988766654 22221121111112345665433222 257999999988877775321111 0 11
Q ss_pred EEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECC
Q 036185 400 AAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVH 478 (1057)
Q Consensus 400 a~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~ 478 (1057)
...-++ +|++.....+ ...+|.+|+.+..+..+...+.. .......-+++.+++....+ ....++.+|+.
T Consensus 284 ~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~~----~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~ 354 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGGY----NASPSWSPDGDLIAFVHREG--GGFNIAVMDLD 354 (417)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCCC----ccCeEECCCCCEEEEEEccC--CceEEEEEeCC
Confidence 111244 4544433222 24799999999988877643211 11112233556666655433 23469999999
Q ss_pred CCeEEEe
Q 036185 479 ACLWKKE 485 (1057)
Q Consensus 479 t~~W~~v 485 (1057)
+..++.+
T Consensus 355 ~~~~~~l 361 (417)
T TIGR02800 355 GGGERVL 361 (417)
T ss_pred CCCeEEc
Confidence 8777665
No 328
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.12 E-value=0.54 Score=50.86 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEE-CCC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCL-GLI 972 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil-~~~ 972 (1057)
...++||++||-|..+..++ .-.++|+|-|.++.+...+++ -|+ +++..|. +.. ..+||+|.+ |++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~--~~f~~v~aTE~S~~Mr~rL~~----kg~----~vl~~~~--w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA--PLFKEVYATEASPPMRWRLSK----KGF----TVLDIDD--WQQTDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHH--hhcceEEeecCCHHHHHHHHh----CCC----eEEehhh--hhccCCceEEEeehhhh
Confidence 46789999999999999987 556789999999998776665 344 2333322 221 346999865 443
Q ss_pred C---CChhHHHHHHHHhhCCCcEEEE
Q 036185 973 P---TSENSWVTAVQALRSEGGTLHV 995 (1057)
Q Consensus 973 P---~~~~~~~~a~~~l~~~gg~l~~ 995 (1057)
- .+...+.++.+.|+ ++|+|.+
T Consensus 162 DRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred hccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 2 22455777777888 4887654
No 329
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.11 E-value=16 Score=43.51 Aligned_cols=192 Identities=12% Similarity=0.049 Sum_probs=97.0
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceE
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hs 399 (1057)
..+|.+|+.+++...+. ..+..-...+..-.+.+|++....++ ..++|.+|..+....++... +. .....
T Consensus 226 ~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~~~~~ 295 (435)
T PRK05137 226 PRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-IDTSP 295 (435)
T ss_pred CEEEEEECCCCcEEEee--cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-ccCce
Confidence 57999999998887765 22222121222222345554433222 35799999998887776421 11 11111
Q ss_pred EEEECCE-EEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCE-EEEEecCCCCcccCcEEEEEC
Q 036185 400 AAVIGSK-IYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSR-LYMFGGYNGEKALGDLYTFDV 477 (1057)
Q Consensus 400 a~~~~~~-iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~ 477 (1057)
...-+++ |++.....+ ...+|.+|..+...+.+...+ .........-+++ |++.. .... ...++.+|+
T Consensus 296 ~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~----~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d~ 365 (435)
T PRK05137 296 SYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFGG----GRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMKP 365 (435)
T ss_pred eEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecCC----CcccCeEECCCCCEEEEEE-cCCC--ceEEEEEEC
Confidence 2222444 443322222 247999999888888775421 1122222223444 44433 2221 246899998
Q ss_pred CCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCC-CCeEEEEECCCCeEEEee
Q 036185 478 HACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQN-YQELSLLDLQLHIWKHLK 536 (1057)
Q Consensus 478 ~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~-~~~i~~yd~~~~~W~~v~ 536 (1057)
.+.....+.. +. ....-...-+++.+++-....... ...+|.+|+....-+.++
T Consensus 366 ~~~~~~~lt~-~~----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 366 DGSGERILTS-GF----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCceEeccC-CC----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 7766655421 11 111111122445444433222211 257999999877666554
No 330
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.01 E-value=0.75 Score=50.79 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=58.1
Q ss_pred CEEEEecCcccHhHHHHHHh-CC-CcEEEEEecCHHHHHHHHHHHH-HcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 897 EVIVDLFAGIGYFVLPFLVR-AK-ARLVYACEWNPCAVEALKHNLQ-ANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~-~~-a~~V~avD~n~~ai~~~~~N~~-~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
.+|+=++||.=+++.....+ .+ ...|.++|++|+|++.+++=++ ..++..++.|+.+|+.+... -..||+|++.-+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 48988888877777655532 22 3469999999999999998766 56777789999999987653 246999988764
Q ss_pred CC----Ch-hHHHHHHHHhhCCCcEEEEE
Q 036185 973 PT----SE-NSWVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 973 P~----~~-~~~~~a~~~l~~~gg~l~~~ 996 (1057)
-. .. +.+....+.++ +|..|.+=
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp -S----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred cccccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 43 33 33444445555 68777665
No 331
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.01 E-value=6.3 Score=45.77 Aligned_cols=230 Identities=19% Similarity=0.206 Sum_probs=116.0
Q ss_pred ccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCc-EEEeccCCCCCCccccEEEEECCEEEEEcccC
Q 036185 285 LFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGT-IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRA 363 (1057)
Q Consensus 285 ~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~-W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~ 363 (1057)
..|+--.++..+-. .+++|+..|+..+ -+-+||..+.. ...+.....|..+.. ....++.++++|+-+
T Consensus 64 ~srFk~~v~s~~fR-~DG~LlaaGD~sG--------~V~vfD~k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFR-SDGRLLAAGDESG--------HVKVFDMKSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDD 132 (487)
T ss_pred HHhhccceeEEEee-cCCeEEEccCCcC--------cEEEeccccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCC
Confidence 34444444443333 4568999998655 57788854421 111111122322222 234578999998754
Q ss_pred CCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCC-cEEEeecCCCCC
Q 036185 364 DPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTL-QWKELLINGEGP 442 (1057)
Q Consensus 364 ~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~-~W~~~~~~g~~P 442 (1057)
. -+-.+|..+.. .+....|..-.-|++ ++...++.|++.||+++. +-.||+.+. .|..--..|
T Consensus 133 ~------v~k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~elnhg--- 196 (487)
T KOG0310|consen 133 K------VVKYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVVELNHG--- 196 (487)
T ss_pred c------eEEEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCce-----EEEEEeccCCceeEEecCC---
Confidence 3 23344444444 233333322222221 222246789999999985 777888776 554432222
Q ss_pred CCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceee-----EEEEE-CCEEEEEeccCCC
Q 036185 443 CARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSH-----TMFLY-KNYLGLFGGCPVR 516 (1057)
Q Consensus 443 ~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~h-----s~~~~-~~~l~i~GG~~~~ 516 (1057)
.|........-+..|...|| |.+-++|+.++ ++++..+..| |+... ++.=++-||.+.
T Consensus 197 ~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~- 260 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR- 260 (487)
T ss_pred CceeeEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeeccccc-
Confidence 12222222222334555555 34666665532 2333333322 22222 345666777543
Q ss_pred CCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEeCCCc
Q 036185 517 QNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGGAA 565 (1057)
Q Consensus 517 ~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg~~ 565 (1057)
.+-+|| +..|+.+.....+.+. -+.++.-+|+-.++|+++.
T Consensus 261 ----~VKVfd--~t~~Kvv~s~~~~~pv--Lsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 261 ----HVKVFD--TTNYKVVHSWKYPGPV--LSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ----ceEEEE--ccceEEEEeeecccce--eeEEecCCCceEEEecccc
Confidence 577888 4556665544333211 1344445788888888754
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.77 E-value=29 Score=42.09 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=80.8
Q ss_pred CCCcEEEEECCCCc--EEEeeccCCCCCcccceEEEE-----ECCE---EEEEcccCCCcccceEEEEECCCCc--EEEe
Q 036185 368 ILSDVWVFNMAKSK--WTLLECSGSVFQPRHRHAAAV-----IGSK---IYVFGGLNNDTIFSSLHVLDTDTLQ--WKEL 435 (1057)
Q Consensus 368 ~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~hsa~~-----~~~~---iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~ 435 (1057)
..+.++.+|..+.+ |+.-....+...-+...+..+ +++. +.++|..++ .++.+|..+.+ |+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeE
Confidence 34589999998875 875321111100011111111 2222 344444433 38999998876 8754
Q ss_pred ecCCCCCCCcceeEEEEECCEEEEEecCC------------CCcccCcEEEEECCCCe--EEEeeccCC----CCCCcee
Q 036185 436 LINGEGPCARHSHSMLAYGSRLYMFGGYN------------GEKALGDLYTFDVHACL--WKKEDIAAR----SPHARFS 497 (1057)
Q Consensus 436 ~~~g~~P~~r~~~s~~~~~~~lyv~GG~~------------~~~~~~~l~~yd~~t~~--W~~v~~~~~----~P~~R~~ 497 (1057)
.... .+....+.+|+-.... .......++.+|..+.+ |+.-..... ...+...
T Consensus 329 ~~~~---------~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 329 EVEQ---------PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred eecc---------ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 3210 0111125566532110 01123468899988764 886421000 0012222
Q ss_pred eEEEEECCEEEEEeccCCCCCCCeEEEEECCCCe--EEEeeccCCCCCcccceEEEEeCCEEEEE
Q 036185 498 HTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHI--WKHLKLNYVCKELFVRSTANVVDDDLIMI 560 (1057)
Q Consensus 498 hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~--W~~v~~~~~~~~~~~~~~a~~~~~~iyi~ 560 (1057)
..++..++.+|+ |.. ...++.||.++.+ |+. .. +........+...++++||.
T Consensus 400 ~~~~~~g~~v~~-g~~-----dG~l~ald~~tG~~lW~~-~~---~~~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 400 GSLATAGNLVFA-GAA-----DGYFRAFDATTGKELWKF-RT---PSGIQATPMTYEVNGKQYVG 454 (488)
T ss_pred cceEecCCeEEE-ECC-----CCeEEEEECCCCceeeEE-EC---CCCceEcCEEEEeCCEEEEE
Confidence 334444555544 442 2369999998864 664 21 11111112233558888874
No 333
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.71 E-value=0.38 Score=49.62 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=72.3
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC-------CCccEEEEeCCccccCCC----CC-c
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS-------VSDHCIVLEGDNRFTAPK----GV-A 964 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~-------~~~~v~~~~~D~~~~~~~----~~-~ 964 (1057)
-.+.|++||.|++-+.++-...-.-+++.||--.--++.++-+++.+ +. |+.+++.++..+++. +. .
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchhhccchhhhcccc
Confidence 45899999999999988743345679999999888888888877765 44 688999999998872 11 1
Q ss_pred cEEEECCCCCChhH-----------HHHHHHHhhCCCcEEEEEccccc
Q 036185 965 NRVCLGLIPTSENS-----------WVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 965 D~Vil~~~P~~~~~-----------~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
-..++-|=|++... +.+..-+|+ .||+++.++-+.+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~-~gg~~ytitDv~e 187 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR-EGGILYTITDVKE 187 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhh-cCceEEEEeeHHH
Confidence 22333333555322 444444566 7999988887653
No 334
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.13 E-value=22 Score=42.63 Aligned_cols=148 Identities=7% Similarity=0.009 Sum_probs=80.0
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..+|++|+.+++-+.+.. .+.. .......-++ .|++....++ ..++|.+|+.+.+.+.+..... ....
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~-~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~----~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGI-NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRA----IDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCC-cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCC----Cccc
Confidence 579999999887766642 1111 1111122233 4655443332 2579999999999887754211 1111
Q ss_pred EEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEEC
Q 036185 449 SMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDL 527 (1057)
Q Consensus 449 s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~ 527 (1057)
....-+++ |++.....+ ..++|.+|+.+..++.+...+... ......-+++.+++.+... ....+|.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~~----~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQN----LGGSITPDGRSMIMVNRTN--GKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCCC----cCeeECCCCCEEEEEEecC--CceEEEEEEC
Confidence 12223444 544432222 257999999999988874222111 1111222444334433221 2347999999
Q ss_pred CCCeEEEeec
Q 036185 528 QLHIWKHLKL 537 (1057)
Q Consensus 528 ~~~~W~~v~~ 537 (1057)
.+...+.+..
T Consensus 382 ~~g~~~~lt~ 391 (448)
T PRK04792 382 ETGAMQVLTS 391 (448)
T ss_pred CCCCeEEccC
Confidence 9998877653
No 335
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.01 E-value=2.3 Score=48.92 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=87.3
Q ss_pred EEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccc-eEEEEE-CCE-EEEEcccCCCcccceEEEEECCCCc
Q 036185 355 HMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHR-HAAAVI-GSK-IYVFGGLNNDTIFSSLHVLDTDTLQ 431 (1057)
Q Consensus 355 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~-hsa~~~-~~~-iyv~GG~~~~~~~~~v~~yD~~t~~ 431 (1057)
-+.+.+|.++. -.+|..|-.+|. .+. ++...++- .++++. +|+ ..+++|... -+|.||+.+.+
T Consensus 226 plllvaG~d~~----lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDle~ak 291 (514)
T KOG2055|consen 226 PLLLVAGLDGT----LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDLETAK 291 (514)
T ss_pred ceEEEecCCCc----EEEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccce-----EEEEeeccccc
Confidence 58888888652 345555655554 222 11111111 122222 444 677776543 48999999999
Q ss_pred EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEe
Q 036185 432 WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFG 511 (1057)
Q Consensus 432 W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~G 511 (1057)
-+++.+....+.+-...-.+..++.++++-|..| .|+.+...|+.|-.- -.++..-...+...-+..|++.|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcEEEEEc
Confidence 9999876555543333344556677777777654 377788888887531 12222222222222245688888
Q ss_pred ccCCCCCCCeEEEEECCCCe
Q 036185 512 GCPVRQNYQELSLLDLQLHI 531 (1057)
Q Consensus 512 G~~~~~~~~~i~~yd~~~~~ 531 (1057)
|+ .++|++|+..+.
T Consensus 364 ~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 364 GT------GEVYVWNLRQNS 377 (514)
T ss_pred CC------ceEEEEecCCcc
Confidence 74 389999999874
No 336
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.86 E-value=0.91 Score=51.47 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=69.8
Q ss_pred ccCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC---ccccCCCCCccEE
Q 036185 892 LDCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD---NRFTAPKGVANRV 967 (1057)
Q Consensus 892 ~~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D---~~~~~~~~~~D~V 967 (1057)
.+.+|++|+=.++ |.|..++.+|+..+ .+|+|+|.+++-.+.+++ -|-+ .++... ..+.+. +.+|.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd---~~i~~~~~~~~~~~~-~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD---HVINSSDSDALEAVK-EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc---EEEEcCCchhhHHhH-hhCcEE
Confidence 4678888777665 58889999997677 579999999999999887 2322 334432 222222 238888
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+-.- | ...+..++++|+ .||.+++-....
T Consensus 234 i~tv-~--~~~~~~~l~~l~-~~G~~v~vG~~~ 262 (339)
T COG1064 234 IDTV-G--PATLEPSLKALR-RGGTLVLVGLPG 262 (339)
T ss_pred EECC-C--hhhHHHHHHHHh-cCCEEEEECCCC
Confidence 7665 6 777999999999 699999988874
No 337
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.80 E-value=0.25 Score=55.25 Aligned_cols=93 Identities=19% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC
Q 036185 880 WGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA 959 (1057)
Q Consensus 880 ~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~ 959 (1057)
|.+..|-...+. ..++.+++|+=-|-|+-+..++.+....+|+|+|.+|.|++.++++++.. .+++.+++++-.++.
T Consensus 6 PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHH
Confidence 455555555544 46778999999999999999996545578999999999999998876643 568999999865543
Q ss_pred C-------CCCccEEEECCCCCCh
Q 036185 960 P-------KGVANRVCLGLIPTSE 976 (1057)
Q Consensus 960 ~-------~~~~D~Vil~~~P~~~ 976 (1057)
. ...+|-|++|+ .-+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DL-GvSS 105 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDL-GVSS 105 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE--S--H
T ss_pred HHHHHccCCCccCEEEEcc-ccCH
Confidence 2 23689999998 5443
No 338
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.78 E-value=0.22 Score=58.16 Aligned_cols=100 Identities=23% Similarity=0.192 Sum_probs=74.6
Q ss_pred CEEEEecCcccHhHHHHHHhC----CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCC-CCccEEEECC
Q 036185 897 EVIVDLFAGIGYFVLPFLVRA----KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPK-GVANRVCLGL 971 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~----~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~-~~~D~Vil~~ 971 (1057)
.+|+-+++|=|++.-..++.+ +.-++||||.||.|+-.++. .+.-..+++|+++.+|.+.+.+. .++|++|--+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 368889999999976554321 22359999999999998876 65566788999999999999864 7899998877
Q ss_pred CCCCh------hHHHHHHHHhhCCCcEEEEEcc
Q 036185 972 IPTSE------NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 972 ~P~~~------~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+.++. +=+..|.+.|+ +.|+-+=+..
T Consensus 448 LGSFGDNELSPECLDG~q~fLk-pdgIsIP~sY 479 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLK-PDGISIPSSY 479 (649)
T ss_pred hccccCccCCHHHHHHHHhhcC-CCceEccchh
Confidence 66652 22667777787 5677654443
No 339
>PTZ00357 methyltransferase; Provisional
Probab=91.78 E-value=0.49 Score=56.80 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=62.0
Q ss_pred EEEEecCcccHhHH---HHHHhCCCc-EEEEEecCHHHHHHHHHHHHH-cCCC-------ccEEEEeCCccccCCC----
Q 036185 898 VIVDLFAGIGYFVL---PFLVRAKAR-LVYACEWNPCAVEALKHNLQA-NSVS-------DHCIVLEGDNRFTAPK---- 961 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl---~~a~~~~a~-~V~avD~n~~ai~~~~~N~~~-N~~~-------~~v~~~~~D~~~~~~~---- 961 (1057)
+|+-++||=|++-- .+++..+.+ +|+|||.||.|+..++.+.+. +... ++|++|..|.+.+-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 68999999999854 444334433 699999998877666665422 2443 4699999999998432
Q ss_pred --------CCccEEEECCCCCCh------hHHHHHHHHhh
Q 036185 962 --------GVANRVCLGLIPTSE------NSWVTAVQALR 987 (1057)
Q Consensus 962 --------~~~D~Vil~~~P~~~------~~~~~a~~~l~ 987 (1057)
+++|+||--++.++- +=+..+.+.|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhh
Confidence 268999988877762 22555555665
No 340
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.71 E-value=23 Score=38.69 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=90.0
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCCC
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKS 380 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t~ 380 (1057)
.+|+.++.+ +.+.++|+.+++....-. ....+ .+++.. +..+|+.++.+ +.+++||..+.
T Consensus 2 ~~~~s~~~d--------~~v~~~d~~t~~~~~~~~-~~~~~---~~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEKD--------NTISVIDTATLEVTRTFP-VGQRP---RGITLSKDGKLLYVCASDS------DTIQVIDLATG 63 (300)
T ss_pred cEEEEecCC--------CEEEEEECCCCceEEEEE-CCCCC---CceEECCCCCEEEEEECCC------CeEEEEECCCC
Confidence 467777643 368888988765433211 11112 223332 33577776543 46899999887
Q ss_pred cEEEeeccCCCCCcccceEEEEE-C-CEEEEEcccCCCcccceEEEEECCCCcEE-EeecCCCCCCCcceeEEE-EECCE
Q 036185 381 KWTLLECSGSVFQPRHRHAAAVI-G-SKIYVFGGLNNDTIFSSLHVLDTDTLQWK-ELLINGEGPCARHSHSML-AYGSR 456 (1057)
Q Consensus 381 ~W~~~~~~g~~p~~R~~hsa~~~-~-~~iyv~GG~~~~~~~~~v~~yD~~t~~W~-~~~~~g~~P~~r~~~s~~-~~~~~ 456 (1057)
+....-.. ...+ ...++. + +.+|+.++.+ +.+..||+.+.+-. .+.. ....++++ .-++.
T Consensus 64 ~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 64 EVIGTLPS--GPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGK 127 (300)
T ss_pred cEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEEeEeeC------CCCcceEEECCCCC
Confidence 76542211 1111 122222 3 3466665433 35889999875422 2211 11112232 23566
Q ss_pred EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeE
Q 036185 457 LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIW 532 (1057)
Q Consensus 457 lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W 532 (1057)
+++++..++ +.++.||..+..-......+..| .+.+..-+++.+++++. ....+.+||+++.+.
T Consensus 128 ~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~----~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 128 IVVNTSETT----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWVSSE----IGGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEecCC----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEEEcC----CCCEEEEEEcCccee
Confidence 666655432 23666788765433211111111 12222224554444442 223689999987654
No 341
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.61 E-value=25 Score=42.16 Aligned_cols=146 Identities=9% Similarity=0.069 Sum_probs=79.8
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceE
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hs 399 (1057)
..+|.+|+.+++-..+. ..+..-...+..-.+.+|++....++ ..++|.+|+.++..+++.... ......
T Consensus 242 ~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~~~~p 311 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AIDTEP 311 (448)
T ss_pred cEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CCccce
Confidence 57999999888776664 22211111111122445665543322 257999999999888775211 111111
Q ss_pred EEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECC-EEEEEecCCCCcccCcEEEEEC
Q 036185 400 AAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGS-RLYMFGGYNGEKALGDLYTFDV 477 (1057)
Q Consensus 400 a~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~-~lyv~GG~~~~~~~~~l~~yd~ 477 (1057)
...-++ .|++.....+ ...+|.+|+.+.+++.+...+... ......-++ .|++. +..+. ...++.+|+
T Consensus 312 ~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~~----~~~~~SpDG~~l~~~-~~~~g--~~~I~~~dl 381 (448)
T PRK04792 312 SWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQN----LGGSITPDGRSMIMV-NRTNG--KFNIARQDL 381 (448)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCCC----cCeeECCCCCEEEEE-EecCC--ceEEEEEEC
Confidence 122244 4544432222 257999999999998886432111 111223344 45544 33222 346999999
Q ss_pred CCCeEEEe
Q 036185 478 HACLWKKE 485 (1057)
Q Consensus 478 ~t~~W~~v 485 (1057)
.+...+.+
T Consensus 382 ~~g~~~~l 389 (448)
T PRK04792 382 ETGAMQVL 389 (448)
T ss_pred CCCCeEEc
Confidence 99888765
No 342
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.52 E-value=1.1 Score=49.86 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=76.7
Q ss_pred HHHHhhccCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCc--cc---cC
Q 036185 886 KLRMARLDCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDN--RF---TA 959 (1057)
Q Consensus 886 r~r~~~~~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~--~~---~~ 959 (1057)
+.--...++.|.+||=++|| +|-.++..|+..||++|+.+|+++..++.|++ -|.+ .+....... .+ ..
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~-~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGAT-VTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCe-EEeeccccccHHHHHHHH
Confidence 33334457889999999999 78888888888899999999999999999998 4443 222222211 11 11
Q ss_pred C----CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 960 P----KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 960 ~----~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
. ...+|.++=-- -....+..|+.+++ .||.+.+-.+.++.
T Consensus 235 ~~~~g~~~~d~~~dCs--G~~~~~~aai~a~r-~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCS--GAEVTIRAAIKATR-SGGTVVLVGMGAEE 278 (354)
T ss_pred HhhccccCCCeEEEcc--CchHHHHHHHHHhc-cCCEEEEeccCCCc
Confidence 1 23477765322 23667888999998 69999999988765
No 343
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.48 E-value=27 Score=41.39 Aligned_cols=182 Identities=9% Similarity=0.060 Sum_probs=93.8
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccc
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHR 397 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 397 (1057)
..+|++|+.+++...+... +. ...+.... +++|++..-.++ ..++|++|..+..+.++... +. ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~--~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~~-~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF--EG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---PA-IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCC--CC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---CC-CcC
Confidence 5799999999887776522 21 11112222 345554322222 25899999999988877521 11 111
Q ss_pred eEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEEC-CEEEEEecCCCCcccCcEEEE
Q 036185 398 HAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYG-SRLYMFGGYNGEKALGDLYTF 475 (1057)
Q Consensus 398 hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~-~~lyv~GG~~~~~~~~~l~~y 475 (1057)
.....-++ +|++.....+ ...+|.+|+.+.+++.+...+ .........-+ +.|++....++ ...++.+
T Consensus 291 ~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~ 360 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG---NFHVAAQ 360 (430)
T ss_pred CeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC---ceEEEEE
Confidence 11112233 4555432222 247999999999988875422 11111222223 44554433222 2369999
Q ss_pred ECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCC
Q 036185 476 DVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLH 530 (1057)
Q Consensus 476 d~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~ 530 (1057)
|+.+..++.+.... . . ... ...-+++.+++..... ....++.++....
T Consensus 361 dl~tg~~~~lt~~~-~--~-~~p-~~spdg~~i~~~~~~~--g~~~l~~~~~~g~ 408 (430)
T PRK00178 361 DLQRGSVRILTDTS-L--D-ESP-SVAPNGTMLIYATRQQ--GRGVLMLVSINGR 408 (430)
T ss_pred ECCCCCEEEccCCC-C--C-CCc-eECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence 99998887763221 1 1 011 1222555555544322 1235777777544
No 344
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.30 E-value=0.2 Score=52.61 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=56.5
Q ss_pred CEEEEecCccc--HhHHHHHHhC----CC---cEEEEEecCHHHHHHHHHHH----HHcCC-------------------
Q 036185 897 EVIVDLFAGIG--YFVLPFLVRA----KA---RLVYACEWNPCAVEALKHNL----QANSV------------------- 944 (1057)
Q Consensus 897 ~~VlDlf~G~G--~fsl~~a~~~----~a---~~V~avD~n~~ai~~~~~N~----~~N~~------------------- 944 (1057)
-+|+.++|++| ++||+++..- .. -+|+|.|+|+.+++.|++.+ ...++
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 47999999999 4666555322 12 37999999999999998742 11111
Q ss_pred ----CccEEEEeCCccc-cCCCCCccEEEECC-CCCCh-----hHHHHHHHHhhCCCcEEEEEcccc
Q 036185 945 ----SDHCIVLEGDNRF-TAPKGVANRVCLGL-IPTSE-----NSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 945 ----~~~v~~~~~D~~~-~~~~~~~D~Vil~~-~P~~~-----~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
..+|.|.+.|..+ ..+...||+|++-. +=++. ..+......|+ +||+|.+-....
T Consensus 113 ~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE~ 178 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSES 178 (196)
T ss_dssp -HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT--
T ss_pred ChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCcc
Confidence 1467888888887 33356799998843 22232 22333334455 799998865543
No 345
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.20 E-value=33 Score=40.68 Aligned_cols=189 Identities=8% Similarity=0.081 Sum_probs=103.3
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEEC-CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccce
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIG-DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~h 398 (1057)
.++|.+|+.+++=+.+.. .+. ........-+ .++++.-...+ ..++|.+|..+..++++... +. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~--~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~~--~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS--SQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---PG--IDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEec--CCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---CC--ccC
Confidence 489999999887777652 111 1111112223 35655433222 36899999999999888521 11 111
Q ss_pred EEEE-E-CCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCE-EEEEecCCCCc---ccCcE
Q 036185 399 AAAV-I-GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSR-LYMFGGYNGEK---ALGDL 472 (1057)
Q Consensus 399 sa~~-~-~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~-lyv~GG~~~~~---~~~~l 472 (1057)
.... - +.+||+.....+ ..++|.+|+.+.+.+++...+. ... ...-+++ |.+........ ...++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 1222 2 345666544322 3579999999999988765322 122 3333444 44443322111 23589
Q ss_pred EEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEee
Q 036185 473 YTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLK 536 (1057)
Q Consensus 473 ~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~ 536 (1057)
+.+|+.+..++.+...+ ....-...-+++.++|-... .....++.+++..+.=..++
T Consensus 352 ~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 352 YLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred EEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEee
Confidence 99999999998874321 11111122245444443321 23346888888877666665
No 346
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.19 E-value=33 Score=40.85 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=96.2
Q ss_pred cccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccce
Q 036185 319 RNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398 (1057)
Q Consensus 319 ~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~h 398 (1057)
...++++|+.+++...+. ..+...........+.+|++....++ ..++|++|+.++...++... .. ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~~--~~~ 295 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---FG--IDT 295 (433)
T ss_pred CcEEEEEECCCCCEEEec--cCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---CC--Ccc
Confidence 357899999888877664 22211111111112345654433222 25799999998887666421 11 111
Q ss_pred EEEE-ECCE-EEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEE
Q 036185 399 AAAV-IGSK-IYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFD 476 (1057)
Q Consensus 399 sa~~-~~~~-iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd 476 (1057)
..+. -+++ |++.....+ ...+|.+|..+.+++.+...+... ...+....++.|++..+.++ ...++.+|
T Consensus 296 ~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d 366 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSGG---QYRIAVMD 366 (433)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCCC---ceeEEEEE
Confidence 1222 2444 444332222 247999999998888876432111 11111122345555544221 23799999
Q ss_pred CCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEe
Q 036185 477 VHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHL 535 (1057)
Q Consensus 477 ~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v 535 (1057)
+.+..+..+.. +.. . ......-+++.+++.... .....++.+++....=..+
T Consensus 367 ~~~g~~~~Lt~-~~~--~--~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 367 LSTGSVRTLTP-GSL--D--ESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCCCeEECCC-CCC--C--CCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEc
Confidence 99888876522 111 0 111222255555554432 1234788888865443333
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.15 E-value=28 Score=42.26 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=60.6
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCc--EEEeccCC-C-CCC-ccccEEEEEC-CEEEEEcccCCCCCCCCcEEEEE
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGT--IKAIHTEG-S-PSP-RLGHTSSLIG-DHMFIIGGRADPLNILSDVWVFN 376 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~--W~~l~~~~-~-P~~-R~~hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd 376 (1057)
++|+.... ..++.+|+.+++ |+.-.... . ..+ -.....++.+ ++||+... ...++.+|
T Consensus 63 ~vy~~~~~---------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD 126 (488)
T cd00216 63 DMYFTTSH---------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALD 126 (488)
T ss_pred EEEEeCCC---------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEE
Confidence 47775442 468999998765 77532111 0 000 0111233445 78886432 24789999
Q ss_pred CCCCc--EEEeeccCCCCCcccceEEEEECCEEEEEcccCCC----cccceEEEEECCCCc--EEEee
Q 036185 377 MAKSK--WTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNND----TIFSSLHVLDTDTLQ--WKELL 436 (1057)
Q Consensus 377 ~~t~~--W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~----~~~~~v~~yD~~t~~--W~~~~ 436 (1057)
..|.+ |+.-......+......+.++.++.+|+ |..+.. .....++.||..|.+ |+.-.
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 98765 8754311000000122344555666654 432221 234578999998765 87643
No 348
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.04 E-value=26 Score=41.11 Aligned_cols=146 Identities=12% Similarity=0.047 Sum_probs=78.9
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..++++|+.++....+.. .+..... .+..-++ .+++....++ ..+++.+|+.+...+.+....... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~---~~- 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGID---TE- 282 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCC---CC-
Confidence 579999999887766542 1111111 1112244 4555433222 256999999998887775432111 11
Q ss_pred EEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEE-EECCEEEEEeccCCCCCCCeEEEEE
Q 036185 449 SMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMF-LYKNYLGLFGGCPVRQNYQELSLLD 526 (1057)
Q Consensus 449 s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~-~~~~~l~i~GG~~~~~~~~~i~~yd 526 (1057)
....-+++ |++.....+ ...+|.+|+.+..+..+...+. ...... .-++..+++..... ....++.+|
T Consensus 283 ~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d 352 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGG-----YNASPSWSPDGDLIAFVHREG--GGFNIAVMD 352 (417)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC-----CccCeEECCCCCEEEEEEccC--CceEEEEEe
Confidence 11122444 444433222 2479999999888877633221 111112 22455555554322 234799999
Q ss_pred CCCCeEEEee
Q 036185 527 LQLHIWKHLK 536 (1057)
Q Consensus 527 ~~~~~W~~v~ 536 (1057)
+.+..++.+.
T Consensus 353 ~~~~~~~~l~ 362 (417)
T TIGR02800 353 LDGGGERVLT 362 (417)
T ss_pred CCCCCeEEcc
Confidence 9998777665
No 349
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.38 E-value=17 Score=38.17 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred EEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCC-CcccceEEEEE-C-CEEEEEcccCCCcccceEEE
Q 036185 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVF-QPRHRHAAAVI-G-SKIYVFGGLNNDTIFSSLHV 424 (1057)
Q Consensus 348 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~R~~hsa~~~-~-~~iyv~GG~~~~~~~~~v~~ 424 (1057)
+++...+++|+|-|. .+|+++..............-| .|..--++... . +++|+|-|. ..|+
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~-------~yw~ 75 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD-------KYWV 75 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC-------EEEE
Confidence 444556899999773 5788876522211111110111 12222233333 2 789999763 4777
Q ss_pred EECCCCcEEE---eecCCCCCC--CcceeEEEEE-CCEEEEEecCCCCcccCcEEEEECCCCeEEE-----eec-cCCCC
Q 036185 425 LDTDTLQWKE---LLINGEGPC--ARHSHSMLAY-GSRLYMFGGYNGEKALGDLYTFDVHACLWKK-----EDI-AARSP 492 (1057)
Q Consensus 425 yD~~t~~W~~---~~~~g~~P~--~r~~~s~~~~-~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~-----v~~-~~~~P 492 (1057)
||..+..+.. +...+ .|. .....+.... ++++|+|-| +..|+||..+.+... +.. -..+|
T Consensus 76 ~~~~~~~~~~Pk~i~~~~-~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 76 YTGKNLEPGYPKPISDLG-FPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EcCcccccCCCcchhhcC-CCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 8765433221 11111 221 2223333333 678999987 358899876655421 000 01122
Q ss_pred CCceeeEEEEEC-CEEEEEeccCCCCCCCeEEEEECCCCe
Q 036185 493 HARFSHTMFLYK-NYLGLFGGCPVRQNYQELSLLDLQLHI 531 (1057)
Q Consensus 493 ~~R~~hs~~~~~-~~l~i~GG~~~~~~~~~i~~yd~~~~~ 531 (1057)
.. -.++.... +++|+|-| +..|.||..+.+
T Consensus 148 ~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 DK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 21 23344444 88999987 389999998776
No 350
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.21 E-value=30 Score=37.39 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=109.8
Q ss_pred cEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCC
Q 036185 302 SQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAK 379 (1057)
Q Consensus 302 ~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t 379 (1057)
+.||+.-- ....++.+|+.++.-..+.. |. -.+++.. ++.+|+.... ...++|+.+
T Consensus 12 g~l~~~D~--------~~~~i~~~~~~~~~~~~~~~---~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~ 69 (246)
T PF08450_consen 12 GRLYWVDI--------PGGRIYRVDPDTGEVEVIDL---PG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDT 69 (246)
T ss_dssp TEEEEEET--------TTTEEEEEETTTTEEEEEES---SS---EEEEEEECTTSEEEEEETT--------CEEEEETTT
T ss_pred CEEEEEEc--------CCCEEEEEECCCCeEEEEec---CC---CceEEEEccCCEEEEEEcC--------ceEEEecCC
Confidence 45776632 23579999999988776542 22 3334443 6788887542 356779999
Q ss_pred CcEEEeecc--CCCCCcccceEEEEECCEEEEEcc-cCCCccc--ceEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-
Q 036185 380 SKWTLLECS--GSVFQPRHRHAAAVIGSKIYVFGG-LNNDTIF--SSLHVLDTDTLQWKELLINGEGPCARHSHSMLAY- 453 (1057)
Q Consensus 380 ~~W~~~~~~--g~~p~~R~~hsa~~~~~~iyv~GG-~~~~~~~--~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~- 453 (1057)
.+++.+... +..+..+..-.++--++.+|+-.- ....... ..++++++. .+.+.+... + ......+..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~---~~pNGi~~s~ 143 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L---GFPNGIAFSP 143 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E---SSEEEEEEET
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c---ccccceEECC
Confidence 999888643 111223333333333677777532 1111122 679999999 776666542 1 112233333
Q ss_pred C-CEEEEEecCCCCcccCcEEEEECCC--CeEEEeeccCCCCCC-ceeeEEEEE-CCEEEEEeccCCCCCCCeEEEEECC
Q 036185 454 G-SRLYMFGGYNGEKALGDLYTFDVHA--CLWKKEDIAARSPHA-RFSHTMFLY-KNYLGLFGGCPVRQNYQELSLLDLQ 528 (1057)
Q Consensus 454 ~-~~lyv~GG~~~~~~~~~l~~yd~~t--~~W~~v~~~~~~P~~-R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~yd~~ 528 (1057)
+ +.||+.- ...+.+++|++.. ..+.........+.. ..--++++- ++.||+..- ....|++||++
T Consensus 144 dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~ 213 (246)
T PF08450_consen 144 DGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPD 213 (246)
T ss_dssp TSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETT
T ss_pred cchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCC
Confidence 3 4577753 2345699999863 334432211122222 122334433 678888732 23489999999
Q ss_pred CCeEEEeecc
Q 036185 529 LHIWKHLKLN 538 (1057)
Q Consensus 529 ~~~W~~v~~~ 538 (1057)
-.....+..+
T Consensus 214 G~~~~~i~~p 223 (246)
T PF08450_consen 214 GKLLREIELP 223 (246)
T ss_dssp SCEEEEEE-S
T ss_pred ccEEEEEcCC
Confidence 7777777643
No 351
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.02 E-value=48 Score=39.42 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcce
Q 036185 369 LSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHS 447 (1057)
Q Consensus 369 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~ 447 (1057)
...+|++|+.+++...+.. .+. ........-++ +|++....++ ..+++.+|+.+.....+..... ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~----~~~ 295 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFG----IDT 295 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCC----Ccc
Confidence 3579999999888776642 111 11111122234 4554432222 2579999999988776644211 111
Q ss_pred eEEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEE
Q 036185 448 HSMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLD 526 (1057)
Q Consensus 448 ~s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd 526 (1057)
.....-+++ |++.....+ ..++|.+|..+..++.+...+... ...+...-+..|++..+. . ....++++|
T Consensus 296 ~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~-~--~~~~I~v~d 366 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGS-G--GQYRIAVMD 366 (433)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECC-C--CceeEEEEE
Confidence 112223444 444332222 247999999988887764322111 011111124455554432 1 223799999
Q ss_pred CCCCeEEEee
Q 036185 527 LQLHIWKHLK 536 (1057)
Q Consensus 527 ~~~~~W~~v~ 536 (1057)
+.+..++.+.
T Consensus 367 ~~~g~~~~Lt 376 (433)
T PRK04922 367 LSTGSVRTLT 376 (433)
T ss_pred CCCCCeEECC
Confidence 9998888765
No 352
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.97 E-value=0.46 Score=54.69 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=81.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEE--
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCL-- 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil-- 969 (1057)
..++..++|+.||+|..+...+. .+...+++++.|+.-+.....-...-.++++..++.+|.-+... +..||.|-.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 46777899999999999999884 44446999999998888777766666677666677777666543 445665422
Q ss_pred --CCCCCChhHHHHHHHHhhCCCcEEEEEccccc
Q 036185 970 --GLIPTSENSWVTAVQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 970 --~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~ 1001 (1057)
-..|.......+..++++ +||+..++++.+.
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLK-PGGLFIVKEWIKT 219 (364)
T ss_pred ecccCCcHHHHHHHHhcccC-CCceEEeHHHHHh
Confidence 233777888999999987 7999999999764
No 353
>PRK00178 tolB translocation protein TolB; Provisional
Probab=89.92 E-value=48 Score=39.25 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=78.5
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEE-ECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcce
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV-IGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHS 447 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~-~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~ 447 (1057)
..+|++|+.+++-..+... +. ...+... -++ +|++..-.++ ..++|.+|+.+..++.+.... . ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~---~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~---~-~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF---EG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHP---A-IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCC---CC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCC---C-CcC
Confidence 5799999999887776421 11 1111222 234 4544322222 257999999999988775421 1 111
Q ss_pred eEEEEECC-EEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE-CCEEEEEeccCCCCCCCeEEEE
Q 036185 448 HSMLAYGS-RLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY-KNYLGLFGGCPVRQNYQELSLL 525 (1057)
Q Consensus 448 ~s~~~~~~-~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~y 525 (1057)
.....-++ .|++.....+ ...+|.+|+.+..+..+...+. ........- ++.|+.....+ . ...++.+
T Consensus 291 ~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~~----~~~~~~~Spdg~~i~~~~~~~-~--~~~l~~~ 360 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVGN----YNARPRLSADGKTLVMVHRQD-G--NFHVAAQ 360 (430)
T ss_pred CeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC----CccceEECCCCCEEEEEEccC-C--ceEEEEE
Confidence 11222234 4555432222 3479999999988887632221 111111112 34454443321 1 3369999
Q ss_pred ECCCCeEEEeec
Q 036185 526 DLQLHIWKHLKL 537 (1057)
Q Consensus 526 d~~~~~W~~v~~ 537 (1057)
|+.+..++.+..
T Consensus 361 dl~tg~~~~lt~ 372 (430)
T PRK00178 361 DLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEccC
Confidence 999998888764
No 354
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.85 E-value=3.2 Score=40.12 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred EEEecCcccHhHHHHHHhCCC-cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc-cCC-C--CCccEEEECCCC
Q 036185 899 IVDLFAGIGYFVLPFLVRAKA-RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF-TAP-K--GVANRVCLGLIP 973 (1057)
Q Consensus 899 VlDlf~G~G~fsl~~a~~~~a-~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~-~~~-~--~~~D~Vil~~~P 973 (1057)
++|+.||+|... .++..... ..++++|.++.+++.++......... .+.++.+|... .++ . ..+|.+......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999965 22211221 36899999999999955544332221 16788888776 233 2 368888444321
Q ss_pred C---ChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 974 T---SENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 974 ~---~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
. ....+....+.++ ++|.+.+.......
T Consensus 130 ~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLPPAKALRELLRVLK-PGGRLVLSDLLRDG 160 (257)
T ss_pred hcCCHHHHHHHHHHhcC-CCcEEEEEeccCCC
Confidence 1 1566777777777 58888777776543
No 355
>PRK13684 Ycf48-like protein; Provisional
Probab=89.67 E-value=43 Score=38.37 Aligned_cols=200 Identities=12% Similarity=0.046 Sum_probs=99.0
Q ss_pred CCcEEEeccC-CCCCCccccEEEEEC-CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCE
Q 036185 329 QGTIKAIHTE-GSPSPRLGHTSSLIG-DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSK 406 (1057)
Q Consensus 329 t~~W~~l~~~-~~P~~R~~hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~ 406 (1057)
-.+|+.+... ..|. ..+....++ +.+|+.|.. ..+++=+-.-.+|+.+.. +..-..+......+.
T Consensus 118 G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g 184 (334)
T PRK13684 118 GKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDG 184 (334)
T ss_pred CCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCC
Confidence 3589987532 1222 223333343 456666543 235655556779998852 223334445555555
Q ss_pred EEEEcccCCCcccceEEEE-ECCCCcEEEeecCCCCCCCcceeEEEE-ECCEEEEEecCCCCcccCcEEEEE-C-CCCeE
Q 036185 407 IYVFGGLNNDTIFSSLHVL-DTDTLQWKELLINGEGPCARHSHSMLA-YGSRLYMFGGYNGEKALGDLYTFD-V-HACLW 482 (1057)
Q Consensus 407 iyv~GG~~~~~~~~~v~~y-D~~t~~W~~~~~~g~~P~~r~~~s~~~-~~~~lyv~GG~~~~~~~~~l~~yd-~-~t~~W 482 (1057)
.|+..|..+. ++.- |....+|+.+.. +..+.-+++.. -++.++++|.. + ...+. . .-.+|
T Consensus 185 ~~v~~g~~G~-----i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW 248 (334)
T PRK13684 185 KYVAVSSRGN-----FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESW 248 (334)
T ss_pred eEEEEeCCce-----EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcc
Confidence 5555444332 3322 344467998854 33344444444 35678888643 2 22332 2 23579
Q ss_pred EEeeccCCCCCCceeeEEEEE-CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEe
Q 036185 483 KKEDIAARSPHARFSHTMFLY-KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIG 561 (1057)
Q Consensus 483 ~~v~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~G 561 (1057)
+.+.... .......++++.. ++.++++|.. ..++.-...-.+|+.+......+ .........-+++.|++|
T Consensus 249 ~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 249 SKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred ccccCCc-cccccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceEEEC
Confidence 8752210 0011112333333 5678888752 13444334457999875322211 112223334467888888
Q ss_pred CCCc
Q 036185 562 GGAA 565 (1057)
Q Consensus 562 Gg~~ 565 (1057)
....
T Consensus 321 ~~G~ 324 (334)
T PRK13684 321 QRGV 324 (334)
T ss_pred CCce
Confidence 7543
No 356
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.41 E-value=4.1 Score=45.31 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=66.5
Q ss_pred CCCEEEEecCcccHhHHHHHHhC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEE-EEeCCccccCCCCCccEEEEC--
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRA-KARLVYACEWNPCAVEALKHNLQANSVSDHCI-VLEGDNRFTAPKGVANRVCLG-- 970 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~-~~~~D~~~~~~~~~~D~Vil~-- 970 (1057)
...+|||++||.|+-...+...- ....++++|.++.+++.++.=++. ....... .......+..+-...|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 45689999999998766554222 356799999999999988874432 2211111 111111111222234888764
Q ss_pred --CCCCChhHHHHHHHHh-hCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC
Q 036185 971 --LIPTSENSWVTAVQAL-RSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 971 --~~P~~~~~~~~a~~~l-~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 1024 (1057)
-+|. ......++.| ..-.++|++-+...... .+.+..+++...+.|.
T Consensus 112 L~EL~~--~~r~~lv~~LW~~~~~~LVlVEpGt~~G-----f~~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 112 LNELPS--AARAELVRSLWNKTAPVLVLVEPGTPAG-----FRRIAEARDQLLEKGA 161 (274)
T ss_pred hhcCCc--hHHHHHHHHHHHhccCcEEEEcCCChHH-----HHHHHHHHHHHhhCCC
Confidence 2344 2333444444 22344777777665432 2335556666555553
No 357
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.93 E-value=1.3 Score=52.16 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred CCEEEEEecceeEeeCCCHHHHHHHhhcc----CCC--CEEEEecCcccHhHHHHHHhCCCcEEEE---EecCHHHHHHH
Q 036185 865 NGILYSFDATKCMFSWGNLSEKLRMARLD----CKD--EVIVDLFAGIGYFVLPFLVRAKARLVYA---CEWNPCAVEAL 935 (1057)
Q Consensus 865 ~gi~~~~d~~~~~f~~~~~~er~r~~~~~----~~g--~~VlDlf~G~G~fsl~~a~~~~a~~V~a---vD~n~~ai~~~ 935 (1057)
.|=.|.|.-..++|-.+-..=-..|.+.+ ..| .++||++||+|.|+-.++ .++.. +.. -|..+..++.|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~-~r~V~-t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLL-ERNVT-TMSFAPNDEHEAQVQFA 158 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHh-hCCce-EEEcccccCCchhhhhh
Confidence 35567777777777544322122333332 223 369999999999998877 44443 222 23444455555
Q ss_pred HHHHHHcCCCccEEEEeCCccccCCCCCccEEEECC-----CCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHH
Q 036185 936 KHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGL-----IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEH 1010 (1057)
Q Consensus 936 ~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~-----~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~ 1010 (1057)
.| -|+.. +.-+-+.-+--.+...||.|=+.- .+.....+.+.-|+|+ +||++.+...--.....+-...
T Consensus 159 le----RGvpa-~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~ppv~~r~~~~~~~ 232 (506)
T PF03141_consen 159 LE----RGVPA-MIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGPPVYQRTDEDLEE 232 (506)
T ss_pred hh----cCcch-hhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCCcccccchHHHHH
Confidence 43 23431 111112222222355677763321 1122334677788898 7999877766432100001123
Q ss_pred HHHHHHHHHHhcC
Q 036185 1011 VSKSIYEIARSEG 1023 (1057)
Q Consensus 1011 ~~~~i~~~~~~~g 1023 (1057)
..+.++++++.+.
T Consensus 233 ~~~~~~~l~~~lC 245 (506)
T PF03141_consen 233 EWNAMEDLAKSLC 245 (506)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666653
No 358
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=88.85 E-value=4.9 Score=43.12 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=77.7
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-----CCCccEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~V 967 (1057)
+..|.. +..|+|+=-++-.++ +...+..++|+.|.-...++.|.. + +.++.+.++|-+..+. +++=-.|
T Consensus 87 lN~~~~-l~~YpGSP~lA~~ll--R~qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~~~l~a~LPP~erRglV 160 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLL--REQDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGFLALKAHLPPKERRGLV 160 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHc--chhceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcHHHHhhhCCCCCcceEE
Confidence 344544 999999988887776 566789999999999999999987 2 3379999999876542 3334589
Q ss_pred EECCCCCChhH--------HHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCC
Q 036185 968 CLGLIPTSENS--------WVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGH 1024 (1057)
Q Consensus 968 il~~~P~~~~~--------~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 1024 (1057)
++|| |...+. +.++.+-. +.|-+.+.|-++.-.+ ++++.+.+++.|.
T Consensus 161 LIDP-PfE~~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~r~~--------~~~f~~~L~~~~i 215 (279)
T COG2961 161 LIDP-PFELKDEYQRVVEALAEAYKRF-ATGTYAIWYPIKDRRQ--------IRRFLRALEALGI 215 (279)
T ss_pred EeCC-CcccccHHHHHHHHHHHHHHhh-cCceEEEEEeecchHH--------HHHHHHHHhhcCc
Confidence 9999 876432 22222222 2455666666654322 3444455566665
No 359
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=88.73 E-value=0.92 Score=46.61 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=71.6
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCc-EEEEEecCHHHHHHHHHHHHHcC-----CCccEEEEeCCccccCCCCCccE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKAR-LVYACEWNPCAVEALKHNLQANS-----VSDHCIVLEGDNRFTAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~-~V~avD~n~~ai~~~~~N~~~N~-----~~~~v~~~~~D~~~~~~~~~~D~ 966 (1057)
+++|.+|+|++-|-|+|+-.++...|++ .|++.=-+.-..=..++..++|- ...|++++-.+...+.+....|.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5789999999999999997776444543 68876444332222222122221 11244555444433332222333
Q ss_pred EEE--------CC-C--CCChhHHHHHHHHhhCCCcEEEEEcccccchh---HHHHHHHH--HHHHHHHHhcCCcee
Q 036185 967 VCL--------GL-I--PTSENSWVTAVQALRSEGGTLHVHGNVKDSEE---KLWAEHVS--KSIYEIARSEGHRWE 1027 (1057)
Q Consensus 967 Vil--------~~-~--P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~---~~~~~~~~--~~i~~~~~~~g~~~~ 1027 (1057)
+.. +- + -+..+......+.|+ +||++.+.+-....-. ..-..+.+ ..+.+..++.|+.++
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ 201 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE 201 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence 322 11 1 223566888889998 7999988876543210 00111111 245556677786653
No 360
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.71 E-value=21 Score=39.13 Aligned_cols=188 Identities=16% Similarity=0.188 Sum_probs=104.3
Q ss_pred CCcEEEEEcccCCCCCCcccccEEEEeCC-----CCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEE
Q 036185 300 NDSQILVFGGFGGMGRHARRNDLFLLDPL-----QGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWV 374 (1057)
Q Consensus 300 ~~~~lyvfGG~~~~g~~~~~~d~~~yd~~-----t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 374 (1057)
+++++|++.|..+. .++.|.-. .+.+.+.- .+|-+-.|-+.+++++.+|.-- ...+.+.+
T Consensus 29 ~~~~iy~~~~~~~~-------~v~ey~~~~~f~~~~~~~~~~--~Lp~~~~GtG~vVYngslYY~~------~~s~~Ivk 93 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN-------TVYEYRNYEDFLRNGRSSRTY--KLPYPWQGTGHVVYNGSLYYNK------YNSRNIVK 93 (250)
T ss_pred CCCCEEEECccCCC-------EEEEEcCHhHHhhcCCCceEE--EEeceeccCCeEEECCcEEEEe------cCCceEEE
Confidence 45679999987652 44554322 22222211 4666677778888888888653 24578999
Q ss_pred EECCCCcEE---EeeccCCC---CCcccc---eEEEEECCEEEEEcccCCCcccceEEEEECCCC----cEEEeecCCCC
Q 036185 375 FNMAKSKWT---LLECSGSV---FQPRHR---HAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTL----QWKELLINGEG 441 (1057)
Q Consensus 375 yd~~t~~W~---~~~~~g~~---p~~R~~---hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~----~W~~~~~~g~~ 441 (1057)
||+.+++-. .++..+.. |-.... .-.++..+-|+++-......-.--+-..|+.+. +|..- .
T Consensus 94 ydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-----~ 168 (250)
T PF02191_consen 94 YDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-----Y 168 (250)
T ss_pred EECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec-----c
Confidence 999998754 33321111 111111 122223444777655443322223455677654 45532 2
Q ss_pred CCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE---CCEEEEEe
Q 036185 442 PCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY---KNYLGLFG 511 (1057)
Q Consensus 442 P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~---~~~l~i~G 511 (1057)
+.+..+. +.++-|.||++...+... ..=.+.||+.+++=..+. -+++.+-..+++..+ +.+||++-
T Consensus 169 ~k~~~~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~--i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 169 PKRSAGN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVS--IPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cchhhcc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceecee--eeeccccCceEeeeECCCCCeEEEEE
Confidence 3333333 455678899987765433 333588999987665542 234444445666666 56788874
No 361
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.71 E-value=1.3 Score=53.91 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=65.8
Q ss_pred eeEeeCCCHHHHH-HHhhc-cCCCCEEEEecCcccHhHHHHHHhC--C--CcEEEEEecCHHHHHHHHHHHHHcCCCc-c
Q 036185 875 KCMFSWGNLSEKL-RMARL-DCKDEVIVDLFAGIGYFVLPFLVRA--K--ARLVYACEWNPCAVEALKHNLQANSVSD-H 947 (1057)
Q Consensus 875 ~~~f~~~~~~er~-r~~~~-~~~g~~VlDlf~G~G~fsl~~a~~~--~--a~~V~avD~n~~ai~~~~~N~~~N~~~~-~ 947 (1057)
..+|.++...+-. +++.. ..+++.|.|++||+|.|-+.+.... + ...+++-|.++..+..++.|+.++++.+ .
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t 274 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN 274 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc
Confidence 3445555444322 22222 2356799999999999988654321 1 2469999999999999999999888743 2
Q ss_pred EEEEeCCcccc---CCCCCccEEEECCCCCC
Q 036185 948 CIVLEGDNRFT---APKGVANRVCLGLIPTS 975 (1057)
Q Consensus 948 v~~~~~D~~~~---~~~~~~D~Vil~~~P~~ 975 (1057)
.....+|...- .....||.|++|| |.+
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~Np-Pf~ 304 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNP-PYS 304 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecC-Ccc
Confidence 33445554332 1234689999998 654
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.55 E-value=63 Score=39.57 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred ccEEEEeCCCCc--EEEeccCC--C-C---CCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeeccC
Q 036185 320 NDLFLLDPLQGT--IKAIHTEG--S-P---SPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECSG 389 (1057)
Q Consensus 320 ~d~~~yd~~t~~--W~~l~~~~--~-P---~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g 389 (1057)
+.++.+|..+++ |+.-.... . + ......+.++.+++||+.. .+ ..++.+|..|.+ |+.-. .
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d------g~l~ALDa~TGk~~W~~~~--~ 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD------ARLVALDAKTGKVVWSKKN--G 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC------CEEEEEECCCCCEEeeccc--c
Confidence 358999998865 76533111 0 0 0011223456678888642 22 369999998875 86532 1
Q ss_pred CCCC-cccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc--EEEee
Q 036185 390 SVFQ-PRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELL 436 (1057)
Q Consensus 390 ~~p~-~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~ 436 (1057)
.... .....+.++.++.+|+-........-..+..||..|++ |+.-.
T Consensus 150 ~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 1111 11233455678887774322112233568899998875 66443
No 363
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.38 E-value=18 Score=41.12 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=51.3
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHHh----CCCcEEEEEecCHHHHHHHHHHHHHcCCCc-cEEEEeCCcccc
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLVR----AKARLVYACEWNPCAVEALKHNLQANSVSD-HCIVLEGDNRFT 958 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~~----~~a~~V~avD~n~~ai~~~~~N~~~N~~~~-~v~~~~~D~~~~ 958 (1057)
.|+..+.++.+++||+||.|.=+-.++.. .....-+++|++.++++.+.+++..-.+.. .|..+++|-.+.
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45566777889999999999875443321 123458999999999999999998444441 356688886554
No 364
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.28 E-value=1.2 Score=51.36 Aligned_cols=102 Identities=23% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC-Cccc----cCCCCCccEE
Q 036185 894 CKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG-DNRF----TAPKGVANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~-D~~~----~~~~~~~D~V 967 (1057)
..+.+|+=++|| +|.+++.+|+..|+++|+++|.+++-++.|++- .+.+ .+..... ++.. ......+|.|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~---~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA---GGAD-VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh---CCCe-EeecCccccHHHHHHHHhCCCCCCEE
Confidence 344589999998 688888888888999999999999999999872 1111 1111111 2111 1113368998
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEcccccc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~ 1002 (1057)
+--- . ....+..++.+++ +||.+++-......
T Consensus 243 ie~~-G-~~~~~~~ai~~~r-~gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAV-G-SPPALDQALEALR-PGGTVVVVGVYGGE 274 (350)
T ss_pred EECC-C-CHHHHHHHHHHhc-CCCEEEEEeccCCc
Confidence 7654 3 4557889999998 68888888777544
No 365
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.21 E-value=7.5 Score=41.04 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCCEEEEecCccc----HhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCc-cccCCC-CCccEEE
Q 036185 895 KDEVIVDLFAGIG----YFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDN-RFTAPK-GVANRVC 968 (1057)
Q Consensus 895 ~g~~VlDlf~G~G----~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~-~~~~~~-~~~D~Vi 968 (1057)
+-+.+++..|+-| .++|.+|++.-..++++|--++......++.+...++.+-++|+.+|. .++++. ..+|.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4567899877654 455666655445679999999999988888888888876679999985 455552 3589999
Q ss_pred ECCCCCChhHHHHHHHHhh--CCCcEEEEEc
Q 036185 969 LGLIPTSENSWVTAVQALR--SEGGTLHVHG 997 (1057)
Q Consensus 969 l~~~P~~~~~~~~a~~~l~--~~gg~l~~~~ 997 (1057)
+|-= ..++....+++++ +.|.++..+-
T Consensus 121 VDc~--~~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 121 VDCK--REDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred EeCC--chhHHHHHHHHhccCCCceEEEEec
Confidence 8872 2333336666654 3455555444
No 366
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.05 E-value=0.75 Score=44.50 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=62.7
Q ss_pred cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc-------cCCCCCccEEEECCCCCChh
Q 036185 905 GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF-------TAPKGVANRVCLGLIPTSEN 977 (1057)
Q Consensus 905 G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~-------~~~~~~~D~Vil~~~P~~~~ 977 (1057)
|+|.+++.+|+..| .+|+++|.++...+.+++ .|.+ .++..+..+ ..+...+|.|+-.. + ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-g-~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-G-SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESS-S-SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEec-C-cHH
Confidence 68999999998788 679999999999988876 4533 223333222 12234688887554 3 367
Q ss_pred HHHHHHHHhhCCCcEEEEEcccc
Q 036185 978 SWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 978 ~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.+..++.+++ ++|.+.++....
T Consensus 71 ~~~~~~~~l~-~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLR-PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEE-EEEEEEEESSTS
T ss_pred HHHHHHHHhc-cCCEEEEEEccC
Confidence 8999999998 699999999986
No 367
>PRK05137 tolB translocation protein TolB; Provisional
Probab=87.91 E-value=52 Score=39.14 Aligned_cols=146 Identities=8% Similarity=0.039 Sum_probs=75.7
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..+|++|+.++....+.. .+..- ......-++ +|++....++ ..++|.+|+.+.....+.... . ....
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~---~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMT-FAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSP---A-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcc-cCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCC---C-ccCc
Confidence 689999999988877752 11111 111122244 4544433222 357999999998877765421 1 1111
Q ss_pred EEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECC-EEEEEeccCCCCCCCeEEEEE
Q 036185 449 SMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKN-YLGLFGGCPVRQNYQELSLLD 526 (1057)
Q Consensus 449 s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~-~l~i~GG~~~~~~~~~i~~yd 526 (1057)
....-+++ |++.....+ ...+|.+|..+...+.+... ..........-++ .|++.. ... ....++++|
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~--~~~~i~~~d 364 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGG--GQFSIGVMK 364 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCC--CceEEEEEE
Confidence 22223444 443322222 34799999988777766321 1111111111234 444433 211 124799999
Q ss_pred CCCCeEEEee
Q 036185 527 LQLHIWKHLK 536 (1057)
Q Consensus 527 ~~~~~W~~v~ 536 (1057)
+.+...+.+.
T Consensus 365 ~~~~~~~~lt 374 (435)
T PRK05137 365 PDGSGERILT 374 (435)
T ss_pred CCCCceEecc
Confidence 9877766654
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.66 E-value=43 Score=36.83 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=97.3
Q ss_pred cccEEEE-ECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEE
Q 036185 345 LGHTSSL-IGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLH 423 (1057)
Q Consensus 345 ~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~ 423 (1057)
+-..... .++.+|.--|..+. +.+.+||+.|++-.... ++|..-++=..+.++++||..-=.+ +..+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f 113 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE-----GTGF 113 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS-----SEEE
T ss_pred cCccEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC-----CeEE
Confidence 3345555 57899988776552 68999999999865544 5677777888899999999874333 3579
Q ss_pred EEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEE-eecc-CCCCCCceeeEEE
Q 036185 424 VLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKK-EDIA-ARSPHARFSHTMF 501 (1057)
Q Consensus 424 ~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~-v~~~-~~~P~~R~~hs~~ 501 (1057)
+||+.+. +.+.. .+.+..+..++..+..+|+--| ++.++.+||.+.+=.. +... ...|..+ -.-+-
T Consensus 114 ~yd~~tl--~~~~~---~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE 181 (264)
T PF05096_consen 114 VYDPNTL--KKIGT---FPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELE 181 (264)
T ss_dssp EEETTTT--EEEEE---EE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEE
T ss_pred EEccccc--eEEEE---EecCCcceEEEcCCCEEEEECC------ccceEEECCcccceEEEEEEEECCEECCC-cEeEE
Confidence 9999864 44433 3445678888888888998876 4679999998764332 2111 1112111 22233
Q ss_pred EECCEEEEEeccCCCCCCCeEEEEECCCCeEEE
Q 036185 502 LYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKH 534 (1057)
Q Consensus 502 ~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~ 534 (1057)
.+++.||.= --..+.|.+.||++..=..
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEE
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEE
Confidence 446666541 1136789999999986443
No 369
>PRK13684 Ycf48-like protein; Provisional
Probab=87.54 E-value=59 Score=37.27 Aligned_cols=199 Identities=13% Similarity=0.158 Sum_probs=94.5
Q ss_pred CCcEEEeccCCCCCCcc-ccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE-CCE
Q 036185 329 QGTIKAIHTEGSPSPRL-GHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI-GSK 406 (1057)
Q Consensus 329 t~~W~~l~~~~~P~~R~-~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~-~~~ 406 (1057)
-.+|+..... .|.... ..+....++..|+.|.. + .+++=+-.-.+|+.+...... +........+ ++.
T Consensus 75 G~tW~~~~~~-~~~~~~~l~~v~~~~~~~~~~G~~-g------~i~~S~DgG~tW~~~~~~~~~--~~~~~~i~~~~~~~ 144 (334)
T PRK13684 75 GETWEERSLD-LPEENFRLISISFKGDEGWIVGQP-S------LLLHTTDGGKNWTRIPLSEKL--PGSPYLITALGPGT 144 (334)
T ss_pred CCCceECccC-CcccccceeeeEEcCCcEEEeCCC-c------eEEEECCCCCCCeEccCCcCC--CCCceEEEEECCCc
Confidence 3579886532 222222 22333335556666532 1 244433334589998632112 2222233333 344
Q ss_pred EEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEE-ECCCCeEEEe
Q 036185 407 IYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTF-DVHACLWKKE 485 (1057)
Q Consensus 407 iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~y-d~~t~~W~~v 485 (1057)
+|+.|... .+++=+-.-.+|+.+... ..-.-+.+....+..|+..|..+. ++.- |....+|+.+
T Consensus 145 ~~~~g~~G------~i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G~-----i~~s~~~gg~tW~~~ 209 (334)
T PRK13684 145 AEMATNVG------AIYRTTDGGKNWEALVED----AAGVVRNLRRSPDGKYVAVSSRGN-----FYSTWEPGQTAWTPH 209 (334)
T ss_pred ceeeeccc------eEEEECCCCCCceeCcCC----CcceEEEEEECCCCeEEEEeCCce-----EEEEcCCCCCeEEEe
Confidence 66655322 244444456789988652 222334444445555555444432 3332 3445679887
Q ss_pred eccCCCCCCceeeEEEEE-CCEEEEEeccCCCCCCCeEEEEE--CCCCeEEEeeccCCCCCcccceEEEE-eCCEEEEEe
Q 036185 486 DIAARSPHARFSHTMFLY-KNYLGLFGGCPVRQNYQELSLLD--LQLHIWKHLKLNYVCKELFVRSTANV-VDDDLIMIG 561 (1057)
Q Consensus 486 ~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~yd--~~~~~W~~v~~~~~~~~~~~~~~a~~-~~~~iyi~G 561 (1057)
.. +..+..++++.. ++.++++|.. ...++. -.-.+|+.+..+... ....-++... .++.+|++|
T Consensus 210 ~~----~~~~~l~~i~~~~~g~~~~vg~~-------G~~~~~s~d~G~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 210 QR----NSSRRLQSMGFQPDGNLWMLARG-------GQIRFNDPDDLESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred eC----CCcccceeeeEcCCCCEEEEecC-------CEEEEccCCCCCccccccCCccc-cccceeeEEEcCCCCEEEEc
Confidence 32 333444444444 6778888752 122332 233589976532111 1111122222 356788887
Q ss_pred CCC
Q 036185 562 GGA 564 (1057)
Q Consensus 562 Gg~ 564 (1057)
...
T Consensus 278 ~~G 280 (334)
T PRK13684 278 GNG 280 (334)
T ss_pred CCC
Confidence 653
No 370
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.07 E-value=1.4 Score=50.14 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=77.6
Q ss_pred HHHHHHHhhc--cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC--------CccEEEEe
Q 036185 883 LSEKLRMARL--DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV--------SDHCIVLE 952 (1057)
Q Consensus 883 ~~er~r~~~~--~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~--------~~~v~~~~ 952 (1057)
...+.++.+. +.+++...||++|+|.....+|..++++.-+++|+....-+++..|.+.|+- .+.++.++
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence 3344455553 4688999999999999998888778888889999998888888887766631 13467778
Q ss_pred CCccccCC----CCCccEEEECCCCCChhHHHHHHHHhh--CCCcEEEEEc
Q 036185 953 GDNRFTAP----KGVANRVCLGLIPTSENSWVTAVQALR--SEGGTLHVHG 997 (1057)
Q Consensus 953 ~D~~~~~~----~~~~D~Vil~~~P~~~~~~~~a~~~l~--~~gg~l~~~~ 997 (1057)
++....-. ...+++|++|..-.+.+...+.-.+|. ++|..||...
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccc
Confidence 77654321 245789999985554444333223332 3576666543
No 371
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.97 E-value=4 Score=46.86 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECCC
Q 036185 895 KDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGLI 972 (1057)
Q Consensus 895 ~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~~ 972 (1057)
+|++||=.+|| +|.+++.+|+..|+++|+++|.+++.++.+++ .|.+.-+..-..|..+... ...+|.|+ +..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vi-d~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSF-EVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEE-ECC
Confidence 57777766543 56666677766788789999999999988865 3433111111112222221 22478775 442
Q ss_pred CCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 973 PTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 973 P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
. ....+..++++++ +||.+...+...
T Consensus 244 G-~~~~~~~~~~~l~-~~G~iv~~G~~~ 269 (343)
T PRK09880 244 G-HPSSINTCLEVTR-AKGVMVQVGMGG 269 (343)
T ss_pred C-CHHHHHHHHHHhh-cCCEEEEEccCC
Confidence 3 2456888999998 689888887643
No 372
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=86.79 E-value=1.3 Score=48.11 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred EEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC----C-CCCccEEEECCCCC
Q 036185 900 VDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA----P-KGVANRVCLGLIPT 974 (1057)
Q Consensus 900 lDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~----~-~~~~D~Vil~~~P~ 974 (1057)
+..|-|+=.++..++ +...+.+++|+.|..++.+++|+... .++.+.+.|.++.+ | ..+=-+|++|| |+
T Consensus 62 l~~YPGSP~ia~~ll--R~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDP-pY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAARLL--REQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDP-PY 135 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----
T ss_pred cCcCCCCHHHHHHhC--CccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECC-CC
Confidence 889999999998887 45678999999999999999998752 37999999988754 2 33345899999 76
Q ss_pred ChhH-HHHHHHHh----h--CCCcEEEEEcccc
Q 036185 975 SENS-WVTAVQAL----R--SEGGTLHVHGNVK 1000 (1057)
Q Consensus 975 ~~~~-~~~a~~~l----~--~~gg~l~~~~~~~ 1000 (1057)
..+. .......| + +.|-+++.|-...
T Consensus 136 E~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~ 168 (245)
T PF04378_consen 136 EQKDDYQRVVDALAKALKRWPTGVYAIWYPIKD 168 (245)
T ss_dssp -STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS
T ss_pred CCchHHHHHHHHHHHHHHhcCCcEEEEEeeccc
Confidence 6322 22222222 2 3455677777654
No 373
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.72 E-value=76 Score=37.71 Aligned_cols=191 Identities=8% Similarity=0.032 Sum_probs=94.7
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceE
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hs 399 (1057)
..++.+|+.+++-..+. ..+..-......-.+.+|++.....+ ..++|.+|..+....++... +. .....
T Consensus 223 ~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~-~~~~~ 292 (429)
T PRK03629 223 SALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS-NNTEP 292 (429)
T ss_pred cEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC-CcCce
Confidence 56899999888766654 22211111111112335655433222 23699999999888776421 11 11111
Q ss_pred EEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCC
Q 036185 400 AAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHA 479 (1057)
Q Consensus 400 a~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t 479 (1057)
...-+++.++|....+ ....+|.+|+.+.....+...+. ........-+++.+++.+..+. ...++.+|+.+
T Consensus 293 ~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~ 364 (429)
T PRK03629 293 TWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLAT 364 (429)
T ss_pred EECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEEccCC--CceEEEEECCC
Confidence 1122444333332211 12478999998887777754221 1111222234444444333222 24699999999
Q ss_pred CeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEe
Q 036185 480 CLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHL 535 (1057)
Q Consensus 480 ~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v 535 (1057)
+.++.+.... ........-+++.+++.+..+. ...+++.+.....=+.+
T Consensus 365 g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 365 GGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 9888763211 0011112235666666654322 23566677655443443
No 374
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=86.32 E-value=37 Score=35.51 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=56.5
Q ss_pred CEEEEEcccCCCCCCCCcEEEEECCCCcEE---EeeccCCCCCcccceEEEEE--CCEEEEEcccCCCcccceEEEEECC
Q 036185 354 DHMFIIGGRADPLNILSDVWVFNMAKSKWT---LLECSGSVFQPRHRHAAAVI--GSKIYVFGGLNNDTIFSSLHVLDTD 428 (1057)
Q Consensus 354 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~g~~p~~R~~hsa~~~--~~~iyv~GG~~~~~~~~~v~~yD~~ 428 (1057)
+++|+|-|. .+|+|+..+..+. .+...+-++.+..--++... ++++|+|.|. ..|+||..
T Consensus 63 ~~~yfFkg~--------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-------~y~ry~~~ 127 (194)
T cd00094 63 GKIYFFKGD--------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-------KYWRYDEK 127 (194)
T ss_pred CEEEEECCC--------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-------EEEEEeCC
Confidence 789999763 6888887652221 11110111111111223333 5789999873 47888876
Q ss_pred CCcEEE-----eecC-CCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCe
Q 036185 429 TLQWKE-----LLIN-GEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACL 481 (1057)
Q Consensus 429 t~~W~~-----~~~~-g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~ 481 (1057)
+++... +... ..+|.. ...+....++++|+|-|. ..|+||..+.+
T Consensus 128 ~~~v~~~yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 128 TQKMDPGYPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred CccccCCCCcchhhcCCCcCCC-cceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 554321 1110 113322 233333334889999773 58999988765
No 375
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.18 E-value=1.8 Score=45.63 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCc----EEEEEecCHHHHHHHHHHHHHc-CCCccEEEEeCC-ccccCC-----CCC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKAR----LVYACEWNPCAVEALKHNLQAN-SVSDHCIVLEGD-NRFTAP-----KGV 963 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~----~V~avD~n~~ai~~~~~N~~~N-~~~~~v~~~~~D-~~~~~~-----~~~ 963 (1057)
++-++||+ |+|.--|.-+ -|.. +-++-|+++.|++.|+.++..| +++..|+...-. -...++ .+.
T Consensus 78 ~~i~~LDI--GvGAnCIYPl--iG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~ 153 (292)
T COG3129 78 KNIRILDI--GVGANCIYPL--IGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNER 153 (292)
T ss_pred CceEEEee--ccCccccccc--ccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccce
Confidence 45567887 4555555433 3432 4778999999999999999999 887667655443 333333 457
Q ss_pred ccEEEECCCCC
Q 036185 964 ANRVCLGLIPT 974 (1057)
Q Consensus 964 ~D~Vil~~~P~ 974 (1057)
||.+.+|| |.
T Consensus 154 yd~tlCNP-PF 163 (292)
T COG3129 154 YDATLCNP-PF 163 (292)
T ss_pred eeeEecCC-Cc
Confidence 99999999 63
No 376
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.99 E-value=5.6 Score=40.71 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=65.4
Q ss_pred cHhHHHHHHhCC-CcEEEEE--ecCHHHHH---HHHHHHHHcCCCccEEEEeCCccccCC-----CCCccEEEECCCCCC
Q 036185 907 GYFVLPFLVRAK-ARLVYAC--EWNPCAVE---ALKHNLQANSVSDHCIVLEGDNRFTAP-----KGVANRVCLGLIPTS 975 (1057)
Q Consensus 907 G~fsl~~a~~~~-a~~V~av--D~n~~ai~---~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~~~~D~Vil~~~P~~ 975 (1057)
=.||+.+|+..+ +..++|- |...+..+ .+.+|++.-.-.+-......||.+... ...||+||.|- |+.
T Consensus 8 fSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF-PH~ 86 (166)
T PF10354_consen 8 FSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF-PHV 86 (166)
T ss_pred hHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC-CCC
Confidence 345555655445 5555554 44443333 233565544322223456667766543 45799999998 765
Q ss_pred h------------------hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 976 E------------------NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 976 ~------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
. .++..|..+|. ++|.||+--+....- ..| .|+++|+..|+.+
T Consensus 87 G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~~py-~~W------~i~~lA~~~gl~l 147 (166)
T PF10354_consen 87 GGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDGQPY-DSW------NIEELAAEAGLVL 147 (166)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCCC-ccc------cHHHHHHhcCCEE
Confidence 3 22666666776 689898888776431 122 4667888888753
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.93 E-value=28 Score=38.20 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred ECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeE
Q 036185 403 IGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLW 482 (1057)
Q Consensus 403 ~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W 482 (1057)
.++.+|.--|..+. +.+..||+.+++-..... +|..-++=.++.++++||..--.+ +..++||+.+.+
T Consensus 54 ~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~yd~~tl~- 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTWKE-----GTGFVYDPNTLK- 121 (264)
T ss_dssp ETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESSS-----SEEEEEETTTTE-
T ss_pred CCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEecC-----CeEEEEccccce-
Confidence 46788888777663 568899999998765544 577778889999999999986543 458999998753
Q ss_pred EEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeE
Q 036185 483 KKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIW 532 (1057)
Q Consensus 483 ~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W 532 (1057)
.+ +..+.+..+-+++..+..+++--| ++.++.+||++.+=
T Consensus 122 -~~---~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 122 -KI---GTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKE 161 (264)
T ss_dssp -EE---EEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SE
T ss_pred -EE---EEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccce
Confidence 33 223444567778877788888877 45899999987643
No 378
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=85.93 E-value=4.7 Score=42.28 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=74.0
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc---CCCCCccEEEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT---APKGVANRVCL 969 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~---~~~~~~D~Vil 969 (1057)
..+|.+||.++=|-|...-.+- .+...+=+-||-+|+-++.++++.=.. ++||.++.|-=.++ ++.+.||-|.-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQ-e~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQ-EAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hhCCceEEEeccchHHHHHHHh-hcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEe
Confidence 3689999999999999887654 455555667899999999999876433 24788888755444 44667999999
Q ss_pred CCC-CCCh---hHHHHHHHHhhCCCcEEEEEcc
Q 036185 970 GLI-PTSE---NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 970 ~~~-P~~~---~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|-. |+.+ .+..-+.++|+ |+|++-+.--
T Consensus 176 DTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfNg 207 (271)
T KOG1709|consen 176 DTYSELYEDLRHFHQHVVRLLK-PEGVFSYFNG 207 (271)
T ss_pred echhhHHHHHHHHHHHHhhhcC-CCceEEEecC
Confidence 875 4443 34566788888 6887655443
No 379
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.39 E-value=0.89 Score=49.92 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=32.4
Q ss_pred HHhhccC--CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHH
Q 036185 888 RMARLDC--KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALK 936 (1057)
Q Consensus 888 r~~~~~~--~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~ 936 (1057)
.|...+. +..+++|+|||.|.+++.++ ..+..|++.|+|+..+...+
T Consensus 11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~--~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 11 WIIELIPKNKHKTYVEPFAGGGSVFLNLK--QPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEecchhHHHHHhc--ccccceeeeechHHHHHHHH
Confidence 3444444 68999999999999998765 36778999999998776655
No 380
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=85.32 E-value=10 Score=41.88 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=34.3
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS 943 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~ 943 (1057)
...+||-.+||.|-++..+| ..|. .|.|+|.+-.++- --|.-+|+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia-~~G~-~~~gnE~S~~Mll--~s~fiLn~ 100 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIA-KLGY-AVQGNEFSYFMLL--ASNFILNH 100 (270)
T ss_pred CccEEEEcCCCcchHHHHHh-hccc-eEEEEEchHHHHH--HHHHHHcc
Confidence 35689999999999999998 4455 5999999987743 33444454
No 381
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.03 E-value=5.6 Score=42.31 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=67.5
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEE
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~V 967 (1057)
+++|.+||=|.|+.|+---+.+-.-| -.-|||||.++++=..|.-=++ + ..||.+|-.|++.... -.-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--k-RtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--K-RTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--c-cCCceeeeccCCCchheeeeeeeEEEE
Confidence 47899999999999998766653333 3469999999998877764332 2 2379999999987543 1246999
Q ss_pred EECCCCCChhH---HHHHHHHhhCCCcEEEEE
Q 036185 968 CLGLIPTSENS---WVTAVQALRSEGGTLHVH 996 (1057)
Q Consensus 968 il~~~P~~~~~---~~~a~~~l~~~gg~l~~~ 996 (1057)
+.|. +.+... ...|--.|+ +||-+.++
T Consensus 231 FaDv-aqpdq~RivaLNA~~FLk-~gGhfvis 260 (317)
T KOG1596|consen 231 FADV-AQPDQARIVALNAQYFLK-NGGHFVIS 260 (317)
T ss_pred eccC-CCchhhhhhhhhhhhhhc-cCCeEEEE
Confidence 9997 544333 334444566 56644333
No 382
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.62 E-value=57 Score=34.38 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=84.1
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEEC-CEEEEEcccCCCCCCCCcEEEEECCCCc
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIG-DHMFIIGGRADPLNILSDVWVFNMAKSK 381 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~ 381 (1057)
..+++|+.+ ..+.+||..+......- . .....-.++.... +.+++.|+.+ ..+.+||+.+..
T Consensus 64 ~~l~~~~~~--------~~i~i~~~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~ 126 (289)
T cd00200 64 TYLASGSSD--------KTIRLWDLETGECVRTL--T-GHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGK 126 (289)
T ss_pred CEEEEEcCC--------CeEEEEEcCcccceEEE--e-ccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcE
Confidence 466666643 35788888764322111 1 1111112222222 3566666533 368899988554
Q ss_pred EEEeeccCCCCCcccceEEEEEC-CEEEEEcccCCCcccceEEEEECCCCcE-EEeecCCCCCCCcceeEEEEE-CCEEE
Q 036185 382 WTLLECSGSVFQPRHRHAAAVIG-SKIYVFGGLNNDTIFSSLHVLDTDTLQW-KELLINGEGPCARHSHSMLAY-GSRLY 458 (1057)
Q Consensus 382 W~~~~~~g~~p~~R~~hsa~~~~-~~iyv~GG~~~~~~~~~v~~yD~~t~~W-~~~~~~g~~P~~r~~~s~~~~-~~~ly 458 (1057)
-...-. .....-.+..... +.+++.|+.++ .+..||+.+.+- ..+.. . ...-.++... ++..+
T Consensus 127 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l 192 (289)
T cd00200 127 CLTTLR----GHTDWVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGKCVATLTG----H-TGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEec----cCCCcEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccccceeEec----C-ccccceEEECCCcCEE
Confidence 322210 1111122233333 34444444233 488888875432 22221 1 1111223332 33355
Q ss_pred EEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEEC-CEEEEEeccCCCCCCCeEEEEECCCCe
Q 036185 459 MFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYK-NYLGLFGGCPVRQNYQELSLLDLQLHI 531 (1057)
Q Consensus 459 v~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~-~~l~i~GG~~~~~~~~~i~~yd~~~~~ 531 (1057)
++++.+ ..+..||+.+......- . .....-.++.... +.+++.++ ....+.+||..+..
T Consensus 193 ~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~~~~-----~~~~i~i~~~~~~~ 252 (289)
T cd00200 193 LSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLASGS-----EDGTIRVWDLRTGE 252 (289)
T ss_pred EEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEEEEc-----CCCcEEEEEcCCce
Confidence 555543 35888998775443321 0 1111222333333 45555554 23368888887643
No 383
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.60 E-value=91 Score=36.69 Aligned_cols=198 Identities=13% Similarity=0.051 Sum_probs=94.0
Q ss_pred CCcEEEeccC-CCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccC-CCCCcc----------
Q 036185 329 QGTIKAIHTE-GSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSG-SVFQPR---------- 395 (1057)
Q Consensus 329 t~~W~~l~~~-~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g-~~p~~R---------- 395 (1057)
-.+|+.++.. .+|.. .+....+ ++.+++.|.. + .+++-+-...+|+.+.... ..+..+
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-G------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~ 235 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-G------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGAS 235 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEecc-c------eEEEECCCCCCceEcccccccccccccccccccccc
Confidence 4689988643 22322 2333344 3567777743 2 3666655667899862110 001111
Q ss_pred ----cceEEEEE-CCEEEEEcccCCCcccceEEEE-ECCCCcEEEeecCCCCCCCcceeEEE-EECCEEEEEecCCCCcc
Q 036185 396 ----HRHAAAVI-GSKIYVFGGLNNDTIFSSLHVL-DTDTLQWKELLINGEGPCARHSHSML-AYGSRLYMFGGYNGEKA 468 (1057)
Q Consensus 396 ----~~hsa~~~-~~~iyv~GG~~~~~~~~~v~~y-D~~t~~W~~~~~~g~~P~~r~~~s~~-~~~~~lyv~GG~~~~~~ 468 (1057)
........ ++.++++|-.. .+++- |.-...|+.+.. |.++.-.++. ..++.+++.|...
T Consensus 236 ~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~G---- 301 (398)
T PLN00033 236 YYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTRGG---- 301 (398)
T ss_pred eeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeCCc----
Confidence 11111111 33344444221 23332 333334898865 3334333333 3567788876432
Q ss_pred cCcEEEEECCCCeE-----EEeeccCCCCCCceee-EEEEE-CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCC
Q 036185 469 LGDLYTFDVHACLW-----KKEDIAARSPHARFSH-TMFLY-KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVC 541 (1057)
Q Consensus 469 ~~~l~~yd~~t~~W-----~~v~~~~~~P~~R~~h-s~~~~-~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~ 541 (1057)
.++.-+-....| ..+ ..+..+... ++... ++.+++.|.. .-++.-...-.+|+.+......
T Consensus 302 --~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~~d~~~~a~G~~------G~v~~s~D~G~tW~~~~~~~~~ 369 (398)
T PLN00033 302 --GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYRSKKEAWAAGGS------GILLRSTDGGKSWKRDKGADNI 369 (398)
T ss_pred --eEEEecCCCCcccccceeec----ccCCCCcceEEEEEcCCCcEEEEECC------CcEEEeCCCCcceeEccccCCC
Confidence 233333333434 443 222223322 23333 5678888863 1355555667799997632111
Q ss_pred CCcccceEEE-EeCCEEEEEeCC
Q 036185 542 KELFVRSTAN-VVDDDLIMIGGG 563 (1057)
Q Consensus 542 ~~~~~~~~a~-~~~~~iyi~GGg 563 (1057)
+...+ ... .-+++.|+.|-.
T Consensus 370 ~~~ly--~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 370 AANLY--SVKFFDDKKGFVLGND 390 (398)
T ss_pred Cccee--EEEEcCCCceEEEeCC
Confidence 12222 222 234788888854
No 384
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.58 E-value=86 Score=36.36 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=75.2
Q ss_pred cEEEEeCCCCc--EEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCC--cEEEeeccCCCCCccc
Q 036185 321 DLFLLDPLQGT--IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKS--KWTLLECSGSVFQPRH 396 (1057)
Q Consensus 321 d~~~yd~~t~~--W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~R~ 396 (1057)
.++.+|+.+.+ |+..... -.....--....+++||+- ..++ .+++||..+. .|..-... . ++.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~i~~g-~~~g------~~y~ld~~~G~~~W~~~~~~---~-~~~ 145 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGKIYVG-SWDG------KLYALDASTGTLVWSRNVGG---S-PYY 145 (370)
T ss_pred cEEEEeCCCCcEEecccCcC--cceeccCceEEeCCeEEEe-cccc------eEEEEECCCCcEEEEEecCC---C-eEE
Confidence 78999999887 8654321 0011111112226676654 3322 7999999654 48776422 2 444
Q ss_pred ceEEEEECCEEEEEcccCCCcccceEEEEECCCC--cEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEE
Q 036185 397 RHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTL--QWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYT 474 (1057)
Q Consensus 397 ~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~--~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~ 474 (1057)
...+++.++.+|+.- ..+.++.+|..+. .|+.-...+ .+ .+........++.+|+- ..+ . ...++.
T Consensus 146 ~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~~-~~~~~~~~~~~~~vy~~-~~~--~-~~~~~a 213 (370)
T COG1520 146 ASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-LS-LSIYGSPAIASGTVYVG-SDG--Y-DGILYA 213 (370)
T ss_pred ecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-cc-cccccCceeecceEEEe-cCC--C-cceEEE
Confidence 445555566677653 2245888888755 477544322 11 22222222455556654 221 1 226999
Q ss_pred EECCCCe--EEE
Q 036185 475 FDVHACL--WKK 484 (1057)
Q Consensus 475 yd~~t~~--W~~ 484 (1057)
+|+.+++ |+.
T Consensus 214 ~~~~~G~~~w~~ 225 (370)
T COG1520 214 LNAEDGTLKWSQ 225 (370)
T ss_pred EEccCCcEeeee
Confidence 9997654 774
No 385
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.35 E-value=1.9 Score=43.02 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=74.5
Q ss_pred CCCEEEEecCcc-cHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCC--ccEEEEeCCccc---cCCCCCccEEE
Q 036185 895 KDEVIVDLFAGI-GYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVS--DHCIVLEGDNRF---TAPKGVANRVC 968 (1057)
Q Consensus 895 ~g~~VlDlf~G~-G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~--~~v~~~~~D~~~---~~~~~~~D~Vi 968 (1057)
.|.+||+|++|- |--+|.+|.++..+.|.--|-|.++++-.++-...|... .+|.+++-+... ......||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467889998884 445566664555678999999999999999988888432 244443333221 11245799998
Q ss_pred ECCCCCC---hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCce
Q 036185 969 LGLIPTS---ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 969 l~~~P~~---~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
...--.+ +.++.+++..+.++.|.-.+..-.+-.. ++.+...+.+.|+.+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s--------L~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS--------LQKFLDEVGTVGFTV 161 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccch--------HHHHHHHHHhceeEE
Confidence 7652222 3446666654443555544444443332 344455556666543
No 386
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.28 E-value=59 Score=34.27 Aligned_cols=185 Identities=10% Similarity=0.063 Sum_probs=84.0
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCCc
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKSK 381 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~ 381 (1057)
.++++|+.+ +.+..||..+..-.... ....... ..+... ++..+++|+.+ ..+.+||..++.
T Consensus 22 ~~l~~~~~~--------g~i~i~~~~~~~~~~~~--~~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~~ 84 (289)
T cd00200 22 KLLATGSGD--------GTIKVWDLETGELLRTL--KGHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETGE 84 (289)
T ss_pred CEEEEeecC--------cEEEEEEeeCCCcEEEE--ecCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCccc
Confidence 466677643 35677777665422111 1111111 122222 34466666653 368899988753
Q ss_pred EEEeeccCCCCCcccceEEEEE-CCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEEC-CEEEE
Q 036185 382 WTLLECSGSVFQPRHRHAAAVI-GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYG-SRLYM 459 (1057)
Q Consensus 382 W~~~~~~g~~p~~R~~hsa~~~-~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~-~~lyv 459 (1057)
....- . .....-.+.... ++.+++.|+.++ .+..||+.+......-. .....-.++.... +.+++
T Consensus 85 ~~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 85 CVRTL---T-GHTSYVSSVAFSPDGRILSSSSRDK-----TIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred ceEEE---e-ccCCcEEEEEEcCCCCEEEEecCCC-----eEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEE
Confidence 22211 0 011111222222 335666665333 48889987554332211 1111122333333 34444
Q ss_pred EecCCCCcccCcEEEEECCCCeEE-EeeccCCCCCCceeeEEEEE-CCEEEEEeccCCCCCCCeEEEEECCCCeE
Q 036185 460 FGGYNGEKALGDLYTFDVHACLWK-KEDIAARSPHARFSHTMFLY-KNYLGLFGGCPVRQNYQELSLLDLQLHIW 532 (1057)
Q Consensus 460 ~GG~~~~~~~~~l~~yd~~t~~W~-~v~~~~~~P~~R~~hs~~~~-~~~l~i~GG~~~~~~~~~i~~yd~~~~~W 532 (1057)
.|+.+ ..+..||+.+..-. ... .....-.++... ++..+++++. ...+.+||+.+...
T Consensus 152 ~~~~~-----~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~~~~~ 211 (289)
T cd00200 152 SSSQD-----GTIKLWDLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSS-----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEcCC-----CcEEEEEccccccceeEe-----cCccccceEEECCCcCEEEEecC-----CCcEEEEECCCCce
Confidence 44323 24888888754322 221 011111222223 3435566653 34688999877443
No 387
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.19 E-value=3.3 Score=45.87 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=62.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCC-CcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC------CCCcc
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAK-ARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP------KGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~-a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~------~~~~D 965 (1057)
..++...+|.=-|-|+-|-.++...+ ..+++|+|.+|.|++.+++-+..++ +++.++++.-.++.. ..++|
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 45678999999999999999985544 3569999999999999999888766 589999987554332 24689
Q ss_pred EEEECC
Q 036185 966 RVCLGL 971 (1057)
Q Consensus 966 ~Vil~~ 971 (1057)
-|++|+
T Consensus 99 GiL~DL 104 (314)
T COG0275 99 GILLDL 104 (314)
T ss_pred EEEEec
Confidence 999887
No 388
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.10 E-value=87 Score=37.16 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=74.5
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..+|++|+.+++=..+. ..+ ......+..-++ +|++....++ ..++|.+|..+.....+.... .....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~----~~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFK-GSNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSS----GIDTE 288 (427)
T ss_pred cEEEEEECCCCCEEEee---cCC-CCccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCCC----CCCcC
Confidence 46999999888655553 111 111111222244 4544333332 357999999887776664321 11111
Q ss_pred EEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEEC
Q 036185 449 SMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDL 527 (1057)
Q Consensus 449 s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~ 527 (1057)
....-+++ |++.....+ ...+|.+|..+...+.+...+. ........-+++.+++...... ...++++|+
T Consensus 289 ~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~ 359 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVGG--AFKLYVQDL 359 (427)
T ss_pred eEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccCC--cEEEEEEEC
Confidence 22333444 444322222 2468999988887776632221 0111111123443334332211 237999999
Q ss_pred CCCeEEEee
Q 036185 528 QLHIWKHLK 536 (1057)
Q Consensus 528 ~~~~W~~v~ 536 (1057)
.+...+.+.
T Consensus 360 ~~g~~~~lt 368 (427)
T PRK02889 360 ATGQVTALT 368 (427)
T ss_pred CCCCeEEcc
Confidence 998887765
No 389
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=83.90 E-value=0.75 Score=50.49 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=58.2
Q ss_pred EEecCcccHhHHHHHHhCCCc----EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC--------CCCCccEE
Q 036185 900 VDLFAGIGYFVLPFLVRAKAR----LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA--------PKGVANRV 967 (1057)
Q Consensus 900 lDlf~G~G~fsl~~a~~~~a~----~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~--------~~~~~D~V 967 (1057)
+|+ |+|.-.|..+ .|+. .-+|.|++.-.+..++.|+..|++++.+.+++....+.+ +...||..
T Consensus 107 iDI--gtgasci~~l--lg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFc 182 (419)
T KOG2912|consen 107 IDI--GTGASCIYPL--LGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFC 182 (419)
T ss_pred eec--cCchhhhHHh--hhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEE
Confidence 565 6667777766 4443 478999999999999999999999988888877554332 13358999
Q ss_pred EECCCCCChhHHHHH
Q 036185 968 CLGLIPTSENSWVTA 982 (1057)
Q Consensus 968 il~~~P~~~~~~~~a 982 (1057)
.+|| |.++.+.+..
T Consensus 183 McNP-PFfe~~~Ea~ 196 (419)
T KOG2912|consen 183 MCNP-PFFENQLEAK 196 (419)
T ss_pred ecCC-chhhchhhhc
Confidence 9999 8877654433
No 390
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.43 E-value=10 Score=36.76 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=57.3
Q ss_pred EEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCC-CCCeEEEEE-CC
Q 036185 451 LAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQ-NYQELSLLD-LQ 528 (1057)
Q Consensus 451 ~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~-~~~~i~~yd-~~ 528 (1057)
+.++|.+|-..-. .....+.+..||+.+.+|+.+..+............+.++|+|-++.-..... ..-++|+++ ..
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3467777766554 33345679999999999998854312234455667788899988876533322 345899985 66
Q ss_pred CCeEEEee
Q 036185 529 LHIWKHLK 536 (1057)
Q Consensus 529 ~~~W~~v~ 536 (1057)
...|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 78999764
No 391
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=82.90 E-value=74 Score=34.35 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE--CCEEEEEcccCCCcccceEEEEECCCC
Q 036185 353 GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI--GSKIYVFGGLNNDTIFSSLHVLDTDTL 430 (1057)
Q Consensus 353 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~--~~~iyv~GG~~~~~~~~~v~~yD~~t~ 430 (1057)
++.+|+..- ....++++|+.+..-..+... . -.++++. ++.+|+.... .+..+|+.+.
T Consensus 11 ~g~l~~~D~------~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~~-------~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDI------PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADSG-------GIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEET------TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEETT-------CEEEEETTTT
T ss_pred CCEEEEEEc------CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEcC-------ceEEEecCCC
Confidence 467777632 235899999999887766522 2 3344444 6778887542 2567799999
Q ss_pred cEEEeecC--CCCCCCcceeEEEEECCEEEEEecCCC-Cccc--CcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE--
Q 036185 431 QWKELLIN--GEGPCARHSHSMLAYGSRLYMFGGYNG-EKAL--GDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY-- 503 (1057)
Q Consensus 431 ~W~~~~~~--g~~P~~r~~~s~~~~~~~lyv~GG~~~-~~~~--~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~-- 503 (1057)
+++.+... +..+..+.+-.++--++.+|+---... .... ..++++++. .+.+.+...-. ...+.+.-
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~-----~pNGi~~s~d 144 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG-----FPNGIAFSPD 144 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES-----SEEEEEEETT
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc-----cccceEECCc
Confidence 99888764 222344444455555678887643221 1112 679999999 66665532211 12344444
Q ss_pred CCEEEEEeccCCCCCCCeEEEEECCCC
Q 036185 504 KNYLGLFGGCPVRQNYQELSLLDLQLH 530 (1057)
Q Consensus 504 ~~~l~i~GG~~~~~~~~~i~~yd~~~~ 530 (1057)
+..||+.-- ....+|.|++...
T Consensus 145 g~~lyv~ds-----~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 145 GKTLYVADS-----FNGRIWRFDLDAD 166 (246)
T ss_dssp SSEEEEEET-----TTTEEEEEEEETT
T ss_pred chheeeccc-----ccceeEEEecccc
Confidence 345776432 4557999998643
No 392
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=82.85 E-value=0.9 Score=55.64 Aligned_cols=47 Identities=36% Similarity=0.330 Sum_probs=39.9
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQAN 942 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N 942 (1057)
..+..++|.|||=|.+.+.++ +.|. .|+|+|+||.|+-.+|.-++.-
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAl-RLG~-~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEAL-RLGL-EVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred ccCCcccccccCCCccchHHH-hcCc-eeEEEecccHHHHHHHHHHhcc
Confidence 457789999999999999998 6675 5999999999998888766543
No 393
>PRK13699 putative methylase; Provisional
Probab=81.87 E-value=3.9 Score=44.17 Aligned_cols=67 Identities=7% Similarity=0.030 Sum_probs=44.2
Q ss_pred EEEEeCCccccC---CCCCccEEEECCCCCCh--------------------hHHHHHHHHhhCCCcEEEEEcccccchh
Q 036185 948 CIVLEGDNRFTA---PKGVANRVCLGLIPTSE--------------------NSWVTAVQALRSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 948 v~~~~~D~~~~~---~~~~~D~Vil~~~P~~~--------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~ 1004 (1057)
++++++|+.+.+ +...+|.||.|| |+.. ..+.++.++|+ +||.+++....+.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDP-PY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~~~~--- 76 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDP-PYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYGWNR--- 76 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCC-CcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEecccc---
Confidence 467899998875 467899999999 8841 23567778888 5887765332221
Q ss_pred HHHHHHHHHHHHHHHHhcCCce
Q 036185 1005 KLWAEHVSKSIYEIARSEGHRW 1026 (1057)
Q Consensus 1005 ~~~~~~~~~~i~~~~~~~g~~~ 1026 (1057)
...+..++++.|+.+
T Consensus 77 -------~~~~~~al~~~GF~l 91 (227)
T PRK13699 77 -------VDRFMAAWKNAGFSV 91 (227)
T ss_pred -------HHHHHHHHHHCCCEE
Confidence 122344566778764
No 394
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.84 E-value=1.2e+02 Score=36.01 Aligned_cols=182 Identities=11% Similarity=0.055 Sum_probs=89.7
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEE-EC-CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccc
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSL-IG-DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHR 397 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~-~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 397 (1057)
..+|.+|+.+++-..+. ..+. ...+.+. -+ .+|++....++ ..++|.+|..+....++... . ....
T Consensus 220 ~~I~~~dl~~g~~~~l~--~~~g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA--NFKG--SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEee--cCCC--CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence 46999999888766554 2221 1112222 23 35554433322 26899999988776666421 1 1111
Q ss_pred eEEEEECCE-EEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEE
Q 036185 398 HAAAVIGSK-IYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFD 476 (1057)
Q Consensus 398 hsa~~~~~~-iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd 476 (1057)
.....-+++ |++.....+ ...+|.+|..+...+.+...+. ........-+++.+++....+.. ..++.+|
T Consensus 288 ~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~g~--~~I~v~d 358 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVGGA--FKLYVQD 358 (427)
T ss_pred CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccCCc--EEEEEEE
Confidence 112222444 544332222 2468889988888877754321 11111222244433333322221 3699999
Q ss_pred CCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCC
Q 036185 477 VHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQL 529 (1057)
Q Consensus 477 ~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~ 529 (1057)
+.+.....+...... ..-...-+++.+++...... ...++.++...
T Consensus 359 ~~~g~~~~lt~~~~~-----~~p~~spdg~~l~~~~~~~g--~~~l~~~~~~g 404 (427)
T PRK02889 359 LATGQVTALTDTTRD-----ESPSFAPNGRYILYATQQGG--RSVLAAVSSDG 404 (427)
T ss_pred CCCCCeEEccCCCCc-----cCceECCCCCEEEEEEecCC--CEEEEEEECCC
Confidence 998887765321110 11112225555555543222 23577777744
No 395
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.78 E-value=35 Score=33.08 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=58.3
Q ss_pred EECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC-cccCcEEEE-ECCC
Q 036185 402 VIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE-KALGDLYTF-DVHA 479 (1057)
Q Consensus 402 ~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~-~~~~~l~~y-d~~t 479 (1057)
.++|-+|...-. .....+.+..||..+.+|+.+..............++.++|+|-++.-.... ...-++|++ |..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 467777766554 3344567999999999999987631223455667788889998887554332 234578888 5667
Q ss_pred CeEEEeec
Q 036185 480 CLWKKEDI 487 (1057)
Q Consensus 480 ~~W~~v~~ 487 (1057)
..|++...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 88997633
No 396
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.68 E-value=1.2e+02 Score=36.00 Aligned_cols=149 Identities=9% Similarity=-0.013 Sum_probs=76.8
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..+|++|+.+++-+.+.. .+.. .......-++ +|++....++ ..++|.+|+.+.+...+... +. ....
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~---~~-~~~~ 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---RS-NNTE 291 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCC---CC-CcCc
Confidence 579999998887666541 1111 1111122244 4554433222 23599999999888777542 11 1111
Q ss_pred EEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECC
Q 036185 449 SMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQ 528 (1057)
Q Consensus 449 s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~ 528 (1057)
....-+++.++|....+. ...+|.+|+.+.....+...+. ........-+++.+++.+... ....++++|+.
T Consensus 292 ~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~dl~ 363 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSNG--GQQHIAKQDLA 363 (429)
T ss_pred eEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEEccC--CCceEEEEECC
Confidence 122224443333332211 3479999998877666532111 111111112444444433221 13479999999
Q ss_pred CCeEEEeec
Q 036185 529 LHIWKHLKL 537 (1057)
Q Consensus 529 ~~~W~~v~~ 537 (1057)
+..++.+..
T Consensus 364 ~g~~~~Lt~ 372 (429)
T PRK03629 364 TGGVQVLTD 372 (429)
T ss_pred CCCeEEeCC
Confidence 999888763
No 397
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.46 E-value=2.7 Score=47.22 Aligned_cols=61 Identities=26% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCHHHHHHHhhccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcC
Q 036185 880 WGNLSEKLRMARLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANS 943 (1057)
Q Consensus 880 ~~~~~er~r~~~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~ 943 (1057)
+....+|.-.. ....|++|+|.|+|+|..++.+. . -....+++|++++.++.+.+-+..+.
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~-~-~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAK-N-LGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHH-H-cCCceEEEecCHHHHHHHHHHHHhhc
Confidence 34444443333 56789999999999999998765 3 34568999999999999998776543
No 398
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=80.92 E-value=8 Score=45.21 Aligned_cols=101 Identities=20% Similarity=0.137 Sum_probs=63.9
Q ss_pred cCCCCEEEEecCcc-cHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC-c----cccCCCCCccE
Q 036185 893 DCKDEVIVDLFAGI-GYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD-N----RFTAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~-G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D-~----~~~~~~~~~D~ 966 (1057)
+.+|++||...||. |.+++.+|+..|+..|++++.+++..+.+++.. +.. .+.....+ . .+......+|.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~-vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE-TINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE-EEcCCcchHHHHHHHHHcCCCCCCE
Confidence 46789999998876 888888887777767999999999998888742 221 11111221 1 11222334776
Q ss_pred EEECC-------------------CCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 967 VCLGL-------------------IPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 967 Vil~~-------------------~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|+=.. .+.....+..+++.++ ++|.+...+.
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEcC
Confidence 65421 1223446788888888 5776666543
No 399
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=80.86 E-value=2.8 Score=42.19 Aligned_cols=53 Identities=32% Similarity=0.239 Sum_probs=33.7
Q ss_pred EecCccc--HhHHHHH--HhCCCcEEEEEecCHHHHHHHHHH--HHHcCCCccEEEEeC
Q 036185 901 DLFAGIG--YFVLPFL--VRAKARLVYACEWNPCAVEALKHN--LQANSVSDHCIVLEG 953 (1057)
Q Consensus 901 Dlf~G~G--~fsl~~a--~~~~a~~V~avD~n~~ai~~~~~N--~~~N~~~~~v~~~~~ 953 (1057)
|++|++| ...+.++ ......+|+++|-+|..++.+++| +.+|+..+.++++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 5555443 123356799999999999999999 888865444554443
No 400
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=80.22 E-value=61 Score=35.11 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=75.8
Q ss_pred ceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeC-CC--C-cEEEeccCCCCCCccccEEEEECCEEEEEcccCC
Q 036185 289 GHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDP-LQ--G-TIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRAD 364 (1057)
Q Consensus 289 ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~-~t--~-~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~ 364 (1057)
-|+.|.+++. -|.+|=+.+.-....+.-+++-|. .+ . .=+.++ ......-+..+.-.+++.+|+.--...
T Consensus 138 ~HSFa~i~~~-----~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~-sey~~~AsEPCvkyY~g~LyLtTRgt~ 211 (367)
T PF12217_consen 138 LHSFATIDDN-----QFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIP-SEYERNASEPCVKYYDGVLYLTTRGTL 211 (367)
T ss_dssp EEEEEE-SSS------EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE---GGG-TTEEEEEEEEETTEEEEEEEES-
T ss_pred eeeeeEecCC-----ceeEEeccCCCCcceeeEEEecccccCCcceeeeech-hhhccccccchhhhhCCEEEEEEcCcC
Confidence 3899999888 778886655322222222222111 01 1 112222 112222334455567999999764444
Q ss_pred CCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCC----------Cc---ccceEEE-------
Q 036185 365 PLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNN----------DT---IFSSLHV------- 424 (1057)
Q Consensus 365 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~----------~~---~~~~v~~------- 424 (1057)
+...-+.+.+-+.....|+.+... -..-....-.+.+++.||+||-... +. .....+.
T Consensus 212 ~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~ 289 (367)
T PF12217_consen 212 PTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSD 289 (367)
T ss_dssp TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT
T ss_pred CCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeeccc
Confidence 456667888888888999998632 1112233445667999999986431 11 1111221
Q ss_pred EECCCCcEEEeecC---CCCCCCccee-EEEEECCEE-EEEecCC
Q 036185 425 LDTDTLQWKELLIN---GEGPCARHSH-SMLAYGSRL-YMFGGYN 464 (1057)
Q Consensus 425 yD~~t~~W~~~~~~---g~~P~~r~~~-s~~~~~~~l-yv~GG~~ 464 (1057)
+.++.-+|..+... |.....-.+. +.|+-++-| |+|||.+
T Consensus 290 W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 290 WSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred CCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 24566678877653 3333333333 445567765 5889864
No 401
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.98 E-value=5.6 Score=45.63 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=63.5
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---C---ccccCCCCCcc
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---D---NRFTAPKGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D---~~~~~~~~~~D 965 (1057)
+.+|++||=..+| +|.+++.+|+..|++.|++++.+++..+.+++ .+.+ .++.. + ..+......+|
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~~d 230 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELRFD 230 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCCCC
Confidence 4567888777543 45555666766788778999999998887743 2432 12211 1 11122234578
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.++++... ....+..++++++ +||.+.++++..
T Consensus 231 ~~v~d~~G-~~~~~~~~~~~l~-~~G~iv~~G~~~ 263 (347)
T PRK10309 231 QLILETAG-VPQTVELAIEIAG-PRAQLALVGTLH 263 (347)
T ss_pred eEEEECCC-CHHHHHHHHHHhh-cCCEEEEEccCC
Confidence 67777633 3557888999998 699998887654
No 402
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.97 E-value=8.2 Score=43.58 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=58.0
Q ss_pred CCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEECCCC
Q 036185 895 KDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIP 973 (1057)
Q Consensus 895 ~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~~~P 973 (1057)
++++||=++| |+|.+++.+|+..|++.|+++|.+++.++.++.. .+ +..+ +. ....+|+|+=.. .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i~~~--~~-~~~g~Dvvid~~-G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------LDPE--KD-PRRDYRAIYDAS-G 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------cChh--hc-cCCCCCEEEECC-C
Confidence 4667776654 4677777788777888888999999877666532 11 1100 00 123478776433 3
Q ss_pred CChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 974 TSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 974 ~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
. ...+..++++++ ++|.+.++....
T Consensus 210 ~-~~~~~~~~~~l~-~~G~iv~~G~~~ 234 (308)
T TIGR01202 210 D-PSLIDTLVRRLA-KGGEIVLAGFYT 234 (308)
T ss_pred C-HHHHHHHHHhhh-cCcEEEEEeecC
Confidence 2 346788999998 689888887643
No 403
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=79.16 E-value=7.2 Score=43.05 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=62.2
Q ss_pred CCEEEEecCccc--HhHHHHHHh--CC-----CcEEEEEecCHHHHHHHHHHHHH-----cCCC----------------
Q 036185 896 DEVIVDLFAGIG--YFVLPFLVR--AK-----ARLVYACEWNPCAVEALKHNLQA-----NSVS---------------- 945 (1057)
Q Consensus 896 g~~VlDlf~G~G--~fsl~~a~~--~~-----a~~V~avD~n~~ai~~~~~N~~~-----N~~~---------------- 945 (1057)
-=+|+-+.|++| ++||+++.. .+ .-+|+|.|+|..+++.|+..+=- -++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 347999999999 566655422 21 23699999999999999864311 2221
Q ss_pred -------ccEEEEeCCccccC-CCCCccEEEEC-CCCCC-----hhHHHHHHHHhhCCCcEEEEEccc
Q 036185 946 -------DHCIVLEGDNRFTA-PKGVANRVCLG-LIPTS-----ENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 946 -------~~v~~~~~D~~~~~-~~~~~D~Vil~-~~P~~-----~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
..|.|-+.|...-. ....||+|++= .+=++ .+.+..-...|+ +||+|.+=...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCc
Confidence 23445555544433 24568988762 22222 333555556666 79998875443
No 404
>PLN00181 protein SPA1-RELATED; Provisional
Probab=79.11 E-value=2.1e+02 Score=37.08 Aligned_cols=140 Identities=10% Similarity=0.071 Sum_probs=69.9
Q ss_pred CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE--CCEEEEEcccCCCcccceEEEEECCCCc
Q 036185 354 DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI--GSKIYVFGGLNNDTIFSSLHVLDTDTLQ 431 (1057)
Q Consensus 354 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~--~~~iyv~GG~~~~~~~~~v~~yD~~t~~ 431 (1057)
+..++.|+.++ .+.+||..+++....- .+ ....-.+.+.. ++.+++.||.++. +.+||+.+..
T Consensus 545 ~~~las~~~Dg------~v~lWd~~~~~~~~~~-~~---H~~~V~~l~~~p~~~~~L~Sgs~Dg~-----v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEG------VVQVWDVARSQLVTEM-KE---HEKRVWSIDYSSADPTLLASGSDDGS-----VKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCC------eEEEEECCCCeEEEEe-cC---CCCCEEEEEEcCCCCCEEEEEcCCCE-----EEEEECCCCc
Confidence 45566666544 6888998776532221 01 11112233332 4567888877653 7888887654
Q ss_pred E-EEeecCCCCCCCcceeEEEE--ECCEEEEEecCCCCcccCcEEEEECCCCe--EEEeeccCCCCCCceeeEEEEECCE
Q 036185 432 W-KELLINGEGPCARHSHSMLA--YGSRLYMFGGYNGEKALGDLYTFDVHACL--WKKEDIAARSPHARFSHTMFLYKNY 506 (1057)
Q Consensus 432 W-~~~~~~g~~P~~r~~~s~~~--~~~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~v~~~~~~P~~R~~hs~~~~~~~ 506 (1057)
- ..+... .. -.++.. .++..++.|+.++ .+..||+.+.. ...+. + ...+ -.++...++.
T Consensus 610 ~~~~~~~~----~~--v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~--~-h~~~--V~~v~f~~~~ 673 (793)
T PLN00181 610 SIGTIKTK----AN--ICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMI--G-HSKT--VSYVRFVDSS 673 (793)
T ss_pred EEEEEecC----CC--eEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEec--C-CCCC--EEEEEEeCCC
Confidence 2 222211 11 111211 2467788887654 58889987542 22211 1 0111 1122223556
Q ss_pred EEEEeccCCCCCCCeEEEEECCC
Q 036185 507 LGLFGGCPVRQNYQELSLLDLQL 529 (1057)
Q Consensus 507 l~i~GG~~~~~~~~~i~~yd~~~ 529 (1057)
.++.|+.+ ..+.++|+..
T Consensus 674 ~lvs~s~D-----~~ikiWd~~~ 691 (793)
T PLN00181 674 TLVSSSTD-----NTLKLWDLSM 691 (793)
T ss_pred EEEEEECC-----CEEEEEeCCC
Confidence 66677643 2577777754
No 405
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.83 E-value=10 Score=43.57 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=57.9
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHh-CCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVR-AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~-~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
..+|++||-.+|| +|.+++.+|++ .|+.+|+++|.+++-++.+++ .+. ...+. + ......+|+|+ +
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~~-~---~~~~~g~d~vi-D 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLID-D---IPEDLAVDHAF-E 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeehh-h---hhhccCCcEEE-E
Confidence 4678999987653 33344444543 456689999999998888765 121 11111 1 11112378776 3
Q ss_pred CCCC--ChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 971 LIPT--SENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 971 ~~P~--~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.... ....+..++++++ +||.+.++...
T Consensus 229 ~~G~~~~~~~~~~~~~~l~-~~G~iv~~G~~ 258 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIR-PQGTIGLMGVS 258 (341)
T ss_pred CCCCCccHHHHHHHHHhCc-CCcEEEEEeec
Confidence 3242 3457888999998 68988887764
No 406
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.66 E-value=1.4e+02 Score=34.98 Aligned_cols=199 Identities=16% Similarity=0.087 Sum_probs=107.4
Q ss_pred cccEEEEeCCCCcEEEeccCCCCCCccccE-EEEEC-CEEEEEcccCCC-----CCCCCcEEEEECCCCcEE--EeeccC
Q 036185 319 RNDLFLLDPLQGTIKAIHTEGSPSPRLGHT-SSLIG-DHMFIIGGRADP-----LNILSDVWVFNMAKSKWT--LLECSG 389 (1057)
Q Consensus 319 ~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs-~v~~~-~~Iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~--~~~~~g 389 (1057)
...++++|+.+++...- ..+ ...++ ++..+ +..+++...+.. ...-..+|++...+..-. .+-
T Consensus 149 ~~~l~v~Dl~tg~~l~d---~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf--- 220 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPD---GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF--- 220 (414)
T ss_dssp EEEEEEEETTTTEEEEE---EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE---
T ss_pred eEEEEEEECCCCcCcCC---ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE---
Confidence 35789999999854321 112 22233 44443 355555544432 123678999998877543 221
Q ss_pred CCCCccc-ceEEEE-ECCEEEEEcccCCCcccceEEEEECCCC-----cEEEeecCCCCCCCcceeEEEEECCEEEEEec
Q 036185 390 SVFQPRH-RHAAAV-IGSKIYVFGGLNNDTIFSSLHVLDTDTL-----QWKELLINGEGPCARHSHSMLAYGSRLYMFGG 462 (1057)
Q Consensus 390 ~~p~~R~-~hsa~~-~~~~iyv~GG~~~~~~~~~v~~yD~~t~-----~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG 462 (1057)
..+.+.. ...+.. -+++.+++.-..+.. .++++.+|.... .|..+... ..-..+.+...++.+|+.-.
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYILTN 295 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEEE-
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEeeC
Confidence 1122222 222222 244433333233333 688999999875 89988652 22333344456889998865
Q ss_pred CCCCcccCcEEEEECCCCe---EEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECC-CCeEEEeec
Q 036185 463 YNGEKALGDLYTFDVHACL---WKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQ-LHIWKHLKL 537 (1057)
Q Consensus 463 ~~~~~~~~~l~~yd~~t~~---W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~-~~~W~~v~~ 537 (1057)
. ......|..+++.+.. |..+- .+......--.+...+++|++.-=.+ ....+.++|+. +..-..++.
T Consensus 296 ~--~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 296 D--DAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp T--T-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT-TEEEEEEES
T ss_pred C--CCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECCCCcEEeeecC
Confidence 3 2334678999998775 76431 11122234455556788888765322 24589999999 444445443
No 407
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.58 E-value=9.8 Score=43.92 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=61.8
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc----cCCCCCccEE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF----TAPKGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~----~~~~~~~D~V 967 (1057)
+.+|++||=..+| +|.+++.+|+..|+++|+++|.++.-.+.+++ .|.+.-+.....|..+ ......+|+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 5678888877542 45555666766777779999999998888864 3443111111112111 1122357877
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+ +... ....+..++..++ +||.+.++...
T Consensus 250 i-d~~g-~~~~~~~~~~~~~-~~G~iv~~G~~ 278 (358)
T TIGR03451 250 I-DAVG-RPETYKQAFYARD-LAGTVVLVGVP 278 (358)
T ss_pred E-ECCC-CHHHHHHHHHHhc-cCCEEEEECCC
Confidence 6 4322 2456888888888 68988887764
No 408
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=77.69 E-value=1.1e+02 Score=33.21 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=88.0
Q ss_pred cEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCC
Q 036185 302 SQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAK 379 (1057)
Q Consensus 302 ~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t 379 (1057)
+.+|+.++.+ +.+..||+.+.+....-. ..+.+ ..++.. ++.+|+.++.+ +.+.+||+.+
T Consensus 43 ~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~-~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~ 104 (300)
T TIGR03866 43 KLLYVCASDS--------DTIQVIDLATGEVIGTLP-SGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIET 104 (300)
T ss_pred CEEEEEECCC--------CeEEEEECCCCcEEEecc-CCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCC
Confidence 4577776532 458889988876643210 11111 222222 34576665432 3689999987
Q ss_pred CcEE-EeeccCCCCCcccceEEEEE-CCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEE
Q 036185 380 SKWT-LLECSGSVFQPRHRHAAAVI-GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRL 457 (1057)
Q Consensus 380 ~~W~-~~~~~g~~p~~R~~hsa~~~-~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~l 457 (1057)
.+-. .++ ....-+++++. ++.+++++..++ +.+..||..+..-......+. +..+....-+++.
T Consensus 105 ~~~~~~~~------~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~ 170 (300)
T TIGR03866 105 RKVLAEIP------VGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKE 170 (300)
T ss_pred CeEEeEee------CCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCE
Confidence 6422 221 11111223332 556666654432 235667877654332211111 1122223334554
Q ss_pred EEEecCCCCcccCcEEEEECCCCeEEE-eecc--CCCCCCceeeEEEEE--CCEEEEEeccCCCCCCCeEEEEECCCCe
Q 036185 458 YMFGGYNGEKALGDLYTFDVHACLWKK-EDIA--ARSPHARFSHTMFLY--KNYLGLFGGCPVRQNYQELSLLDLQLHI 531 (1057)
Q Consensus 458 yv~GG~~~~~~~~~l~~yd~~t~~W~~-v~~~--~~~P~~R~~hs~~~~--~~~l~i~GG~~~~~~~~~i~~yd~~~~~ 531 (1057)
+++++..+ +.+..||+.+..... +... +..+.......+... +..+|+..+ ..+.+.+||..+.+
T Consensus 171 l~~~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 171 LWVSSEIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----PANRVAVVDAKTYE 240 (300)
T ss_pred EEEEcCCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-----CCCeEEEEECCCCc
Confidence 44444322 358889998765422 2111 111111111122222 344555433 12468899987644
No 409
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.42 E-value=17 Score=43.93 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=64.3
Q ss_pred CCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEE--EeCC------cccc------
Q 036185 894 CKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIV--LEGD------NRFT------ 958 (1057)
Q Consensus 894 ~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~--~~~D------~~~~------ 958 (1057)
.++++|+=++|| +|-.++.+|+..|| .|+++|.+++..+.+++ .|.+ .+.+ -..+ +.+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHHH
Confidence 468999999998 57788888877888 69999999999998876 2332 1111 0110 0000
Q ss_pred -----CCC--CCccEEEECCC-CC--ChhH-HHHHHHHhhCCCcEEEEEccc
Q 036185 959 -----APK--GVANRVCLGLI-PT--SENS-WVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 959 -----~~~--~~~D~Vil~~~-P~--~~~~-~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+.+ ..+|+||-.-. |. .... ..+++..++ +||++..-.+.
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~~ 287 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEccC
Confidence 011 35899987541 22 1234 488888888 68887777663
No 410
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.41 E-value=1.6e+02 Score=34.91 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=83.6
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECC-EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGS-KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~-~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
.++|++|+.++.=+.+... ..........-++ ++++.-...+ ..++|.+|..+..++.+... +..-...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~----~g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~---~~~d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS----QGMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNY---PGIDVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEecC----CCcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccC---CCccCcc
Confidence 3899999998876666421 1111112222244 4544433222 35799999999999988653 1100111
Q ss_pred EEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCC---CCCeEEEE
Q 036185 449 SMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQ---NYQELSLL 525 (1057)
Q Consensus 449 s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~---~~~~i~~y 525 (1057)
.....+.+||+.-...+ ..+||++|+.+...+++...+. .......-+..|.......... ...+++++
T Consensus 283 ~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 11122446766644322 3589999999998877643222 1111112234444443322111 23589999
Q ss_pred ECCCCeEEEeec
Q 036185 526 DLQLHIWKHLKL 537 (1057)
Q Consensus 526 d~~~~~W~~v~~ 537 (1057)
|+++..++.+..
T Consensus 355 d~~~g~~~~LT~ 366 (419)
T PRK04043 355 STNSDYIRRLTA 366 (419)
T ss_pred ECCCCCeEECCC
Confidence 999999998865
No 411
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=77.20 E-value=3.4 Score=43.50 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=54.3
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
+.-..++|++|+.|+++-++. ..+..+++.+|.+..+++.++. ++-+++. +..+.+|-..+.. ...+|+||-.+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~-~e~vekli~~DtS~~M~~s~~~-~qdp~i~--~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLR-GEGVEKLIMMDTSYDMIKSCRD-AQDPSIE--TSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hhCcceeecccchhhhhHHHH-hcchhheeeeecchHHHHHhhc-cCCCceE--EEEEecchhcccccccchhhhhhhh
Confidence 445689999999999998876 4567889999999999988765 3446664 5556667554332 45689887654
No 412
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=77.16 E-value=29 Score=38.43 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=89.2
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHH--HHcCCC-ccEEEEeCCccccCC---CCCccEE
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNL--QANSVS-DHCIVLEGDNRFTAP---KGVANRV 967 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~--~~N~~~-~~v~~~~~D~~~~~~---~~~~D~V 967 (1057)
.+-++|+-+|-|-|++--..+++.-...+.-+|++..-++.-++=. -.++.+ .+|.++-||.+.++. ...||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3457899999999999988776655677999999999888777633 334554 378999999998875 5679999
Q ss_pred EECCC----CCC----hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 968 CLGLI----PTS----ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 968 il~~~----P~~----~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
+.+-- |.. ..++...+++|+ ++|++..-.-. .....++++.+++.|+..+-.
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~ec-----~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQGEC-----MWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEecce-----ehHHHHHHHHHHHhHHHhcCc
Confidence 98641 222 233666667777 68877654411 223467788888888877643
No 413
>PRK11524 putative methyltransferase; Provisional
Probab=76.27 E-value=3.2 Score=46.49 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=37.2
Q ss_pred cEEEEeCCccccC---CCCCccEEEECCCCCCh---------------------hHHHHHHHHhhCCCcEEEEEcc
Q 036185 947 HCIVLEGDNRFTA---PKGVANRVCLGLIPTSE---------------------NSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 947 ~v~~~~~D~~~~~---~~~~~D~Vil~~~P~~~---------------------~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+..++++|+.+++ +...+|+|++|| |+.. ..+..+.++|+ +||.++++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDP-PY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADP-PYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECC-CcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 4578999999865 356899999999 8531 23566777777 7998888643
No 414
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=76.05 E-value=12 Score=47.36 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=73.5
Q ss_pred CEEEEecCcccHhHHHHHHhC------C------CcEEEEEecCHHHHHHHHHHHH-------------------HcCC-
Q 036185 897 EVIVDLFAGIGYFVLPFLVRA------K------ARLVYACEWNPCAVEALKHNLQ-------------------ANSV- 944 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~------~------a~~V~avD~n~~ai~~~~~N~~-------------------~N~~- 944 (1057)
=+|+|++=|+|+-.+.++..- . .-+.+++|..|-+.+.+++-.. ..|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 589999999999777766322 1 1379999987754444433221 1232
Q ss_pred -----Cc--cEEEEeCCccccCC--CCCccEEEECCCCCC-------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHH
Q 036185 945 -----SD--HCIVLEGDNRFTAP--KGVANRVCLGLIPTS-------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWA 1008 (1057)
Q Consensus 945 -----~~--~v~~~~~D~~~~~~--~~~~D~Vil~~~P~~-------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~ 1008 (1057)
.+ +.+++.||+++.++ ...+|.+++|.+--. ...+....++++ +||++..|+...
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~t~t~a~-------- 209 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLATFTSAG-------- 209 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEEEeehHH--------
Confidence 11 35688899998876 345899999963221 344555555555 799999997543
Q ss_pred HHHHHHHHHHHHhcCCc
Q 036185 1009 EHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 1009 ~~~~~~i~~~~~~~g~~ 1025 (1057)
.++..+...|+.
T Consensus 210 -----~vr~~l~~~GF~ 221 (662)
T PRK01747 210 -----FVRRGLQEAGFT 221 (662)
T ss_pred -----HHHHHHHHcCCe
Confidence 345556666765
No 415
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.57 E-value=1.4e+02 Score=33.29 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=84.7
Q ss_pred cEEEEECCEEEEEcccCC-C---------------CCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEE------EC
Q 036185 347 HTSSLIGDHMFIIGGRAD-P---------------LNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV------IG 404 (1057)
Q Consensus 347 hs~v~~~~~Iyv~GG~~~-~---------------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~------~~ 404 (1057)
.++..+++.|| |||+-. + .+-.+.|+.||.++++-+.+-.. ..-.++....-+. ++
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCc
Confidence 44455566665 788731 0 12356899999998873333211 1112222221111 25
Q ss_pred CEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeE--
Q 036185 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLW-- 482 (1057)
Q Consensus 405 ~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W-- 482 (1057)
+++++.=+ ++.. .--+|..|..+..-..+... |.+ -.+.+.+...|-+ .+.....+.+.+||+.+++|
T Consensus 118 D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~~~---ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~ 187 (339)
T PF09910_consen 118 DRLLLARA-DGHA-NLGVYSLDRRTGKAEKLSSN---PSL---KGTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVI 187 (339)
T ss_pred CEEEEEec-CCcc-eeeeEEEcccCCceeeccCC---CCc---CceEeeeeEEEec--cccccCCceEEEEEccCCeEEE
Confidence 66766532 2211 22488999999998888663 332 2233333333322 22334567899999999999
Q ss_pred EEeecc----CCCCCCceeeEEEEECCEEEEE-eccCCCCCCCeEEEEECC
Q 036185 483 KKEDIA----ARSPHARFSHTMFLYKNYLGLF-GGCPVRQNYQELSLLDLQ 528 (1057)
Q Consensus 483 ~~v~~~----~~~P~~R~~hs~~~~~~~l~i~-GG~~~~~~~~~i~~yd~~ 528 (1057)
+..+.. +.....|..-.++...+++|.| +| .+.+.||.
T Consensus 188 e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG--------Gi~vgnP~ 230 (339)
T PF09910_consen 188 ESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG--------GIFVGNPY 230 (339)
T ss_pred EecccccCCCCCceEeeccccEEEEeeeEEEEEec--------cEEEeCCC
Confidence 433211 1111223344455556665554 44 46666665
No 416
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.23 E-value=1.8e+02 Score=34.33 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=100.8
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCcc-------------ccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEee
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRL-------------GHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLE 386 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~-------------~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 386 (1057)
.++|.|||.+.+.+.+... +|..|. ..-+.+-|+.|-++ -+ ..++++++..+--.++.
T Consensus 287 GdIylydP~td~lekldI~-lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-SR-------GkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIG-LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-SR-------GKAFIMRPWDGYSIQVG 357 (668)
T ss_pred CcEEEeCCCcCcceeeecC-CccccccccccccCHHHhhhhhccCCCcEEEEE-ec-------CcEEEECCCCCeeEEcC
Confidence 4899999999999888643 333321 11111223332221 11 12444443322222222
Q ss_pred ccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCEEEEEecCCCC
Q 036185 387 CSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGE 466 (1057)
Q Consensus 387 ~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~ 466 (1057)
. ..|-.+.-...+++-.++|-.+++ .+.+||..+..-..+.. +..+.....+.-+++-.+.+-.
T Consensus 358 ---~--~~~VrY~r~~~~~e~~vigt~dgD----~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNd--- 421 (668)
T COG4946 358 ---K--KGGVRYRRIQVDPEGDVIGTNDGD----KLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVAND--- 421 (668)
T ss_pred ---C--CCceEEEEEccCCcceEEeccCCc----eEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcC---
Confidence 1 122222222334456777766654 48899999998887764 3445555555556675555432
Q ss_pred cccCcEEEEECCCCeEEEeeccCCCCCCceee--EEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeecc
Q 036185 467 KALGDLYTFDVHACLWKKEDIAARSPHARFSH--TMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLN 538 (1057)
Q Consensus 467 ~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~h--s~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~ 538 (1057)
--++|.+|+.++.-+.+.. .|.+. ..+...+.=++.=++........+.+||+.+.+-..++.+
T Consensus 422 --r~el~vididngnv~~idk------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 422 --RFELWVIDIDNGNVRLIDK------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred --ceEEEEEEecCCCeeEecc------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 2369999999988776522 11111 1122233323333444555677899999999887777643
No 417
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.05 E-value=5.5 Score=44.83 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=64.6
Q ss_pred ccCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC----CccccCC---CCC
Q 036185 892 LDCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG----DNRFTAP---KGV 963 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~----D~~~~~~---~~~ 963 (1057)
.+.+|+.|.-+++| +|-=++..|+..||.+++|||+|++-++++++ -|.. .+++. |+-+.+. ..-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT---~~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT---HFVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc---eeecchhhhhHHHHHHHhcCCC
Confidence 35778888777664 77777777878899999999999999999886 4433 33333 2322221 224
Q ss_pred ccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 964 ANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 964 ~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|.++--- -....+..|+.++.+ +|...+-....
T Consensus 255 ~d~~~e~~--G~~~~~~~al~~~~~-~G~~v~iGv~~ 288 (366)
T COG1062 255 ADYAFECV--GNVEVMRQALEATHR-GGTSVIIGVAG 288 (366)
T ss_pred CCEEEEcc--CCHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 56653211 224468888888874 77766666544
No 418
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.59 E-value=1.7e+02 Score=34.60 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=66.2
Q ss_pred ECCEEEEEcccCCCCCCCCcEEEEECCCC-cEEEeeccCCCCCcccceEEEEE-C-CEEEEEcccCCCcccceEEEEECC
Q 036185 352 IGDHMFIIGGRADPLNILSDVWVFNMAKS-KWTLLECSGSVFQPRHRHAAAVI-G-SKIYVFGGLNNDTIFSSLHVLDTD 428 (1057)
Q Consensus 352 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~g~~p~~R~~hsa~~~-~-~~iyv~GG~~~~~~~~~v~~yD~~ 428 (1057)
.++.|++.||+++ .+-.||..+. .|..--..| .|. -..+.+ + ..|...|| |.+-++|+.
T Consensus 164 ~~~hivvtGsYDg------~vrl~DtR~~~~~v~elnhg-~pV----e~vl~lpsgs~iasAgG-------n~vkVWDl~ 225 (487)
T KOG0310|consen 164 ANDHIVVTGSYDG------KVRLWDTRSLTSRVVELNHG-CPV----ESVLALPSGSLIASAGG-------NSVKVWDLT 225 (487)
T ss_pred CCCeEEEecCCCc------eEEEEEeccCCceeEEecCC-Cce----eeEEEcCCCCEEEEcCC-------CeEEEEEec
Confidence 4678999999987 4777888776 443321111 111 122223 2 33444455 347777766
Q ss_pred CCcEEEeecCCCCCCCccee-----EEEEE-CCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEE
Q 036185 429 TLQWKELLINGEGPCARHSH-----SMLAY-GSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFL 502 (1057)
Q Consensus 429 t~~W~~~~~~g~~P~~r~~~-----s~~~~-~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~ 502 (1057)
++. .++..+.+| ++.+. ++.-++-||.++ .+-+||. ..|+.+.. -..|.|-. ++++
T Consensus 226 ~G~--------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s-~~~~~pvL--siav 287 (487)
T KOG0310|consen 226 TGG--------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDT--TNYKVVHS-WKYPGPVL--SIAV 287 (487)
T ss_pred CCc--------eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEEc--cceEEEEe-eeccccee--eEEe
Confidence 443 122223322 22222 346667777765 3778884 34554421 12333332 2332
Q ss_pred E-CCEEEEEeccCC
Q 036185 503 Y-KNYLGLFGGCPV 515 (1057)
Q Consensus 503 ~-~~~l~i~GG~~~ 515 (1057)
. ++.-+++|+.++
T Consensus 288 s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNG 301 (487)
T ss_pred cCCCceEEEecccc
Confidence 2 778888888554
No 419
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=74.58 E-value=14 Score=42.85 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=60.7
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---CccccC---CCCCcc
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---DNRFTA---PKGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D~~~~~---~~~~~D 965 (1057)
+.+|++||=..+| +|.+++.+|+..|+++|+++|.+++-.+.+++ .|.+ .++.. |..+.+ ....+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCC
Confidence 4678888776553 45556666766788779999999998888865 3443 12222 111111 122578
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+|+=.. . ....+..+++.++ ++|.+..+...
T Consensus 262 ~vid~~-G-~~~~~~~~~~~l~-~~G~iv~~G~~ 292 (371)
T cd08281 262 YAFEMA-G-SVPALETAYEITR-RGGTTVTAGLP 292 (371)
T ss_pred EEEECC-C-ChHHHHHHHHHHh-cCCEEEEEccC
Confidence 776332 2 2456888899998 68877776653
No 420
>PRK01742 tolB translocation protein TolB; Provisional
Probab=74.28 E-value=1.9e+02 Score=34.26 Aligned_cols=137 Identities=9% Similarity=0.050 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcEEEeccCCCCCCccccEEEE-ECCE-EEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccc
Q 036185 320 NDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSL-IGDH-MFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHR 397 (1057)
Q Consensus 320 ~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~-~~~~-Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 397 (1057)
..++.+|+.++.-..+. ..+. ...+... -+++ |++....++ .-++|.+|+.+....++... .. ...
T Consensus 228 ~~i~i~dl~tg~~~~l~--~~~g--~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~~-~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA--SFRG--HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---AG-NNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEe--cCCC--ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---CC-CcC
Confidence 46899999887766554 2221 1112222 2444 444332222 13689999988887766421 11 111
Q ss_pred eEEEEECCE-EEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECC-EEEEEecCCCCcccCcEEEE
Q 036185 398 HAAAVIGSK-IYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGS-RLYMFGGYNGEKALGDLYTF 475 (1057)
Q Consensus 398 hsa~~~~~~-iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~-~lyv~GG~~~~~~~~~l~~y 475 (1057)
.....-+++ |++....++ ...+|.+|..+..-..+... . +. ....-++ .|++.++ +.++.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~~-----~-~~-~~~SpDG~~ia~~~~-------~~i~~~ 358 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGGR-----G-YS-AQISADGKTLVMING-------DNVVKQ 358 (429)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecCC-----C-CC-ccCCCCCCEEEEEcC-------CCEEEE
Confidence 112222444 444433222 23677777766544443211 1 11 1122244 4544433 358889
Q ss_pred ECCCCeEEEe
Q 036185 476 DVHACLWKKE 485 (1057)
Q Consensus 476 d~~t~~W~~v 485 (1057)
|+.+..+..+
T Consensus 359 Dl~~g~~~~l 368 (429)
T PRK01742 359 DLTSGSTEVL 368 (429)
T ss_pred ECCCCCeEEe
Confidence 9999988765
No 421
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.08 E-value=1.7e+02 Score=33.56 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=111.3
Q ss_pred CcEEEEEcccCCCCCCcccccE--EEEeCCCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEEC
Q 036185 301 DSQILVFGGFGGMGRHARRNDL--FLLDPLQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNM 377 (1057)
Q Consensus 301 ~~~lyvfGG~~~~g~~~~~~d~--~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~ 377 (1057)
++.||+...... ....+ +.++..+++++.+.........-+|.++.- +..+|+.- +. ...+.+|++
T Consensus 48 ~~~LY~~~e~~~-----~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l 116 (345)
T PF10282_consen 48 GRRLYVVNEGSG-----DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPL 116 (345)
T ss_dssp SSEEEEEETTSS-----TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEE
T ss_pred CCEEEEEEcccc-----CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEc
Confidence 467888866431 12334 445555567777652221112222322222 34666652 21 246888888
Q ss_pred CCCc-EEEee----c--cCCCC---CcccceEEEEE--CCEEEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCC
Q 036185 378 AKSK-WTLLE----C--SGSVF---QPRHRHAAAVI--GSKIYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPC 443 (1057)
Q Consensus 378 ~t~~-W~~~~----~--~g~~p---~~R~~hsa~~~--~~~iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~ 443 (1057)
..+. -.... . .++.+ ..-.-|.+... ++.+|+.. .-.+.++.|+..... ....... ..|.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~-~~~~ 190 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSI-KVPP 190 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEE-ECST
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCceEEEeecc-cccc
Confidence 7642 22211 0 11211 22334666555 34577653 123568888886655 6553321 1222
Q ss_pred CcceeEEEEE-C-CEEEEEecCCCCcccCcEEEEECC--CCeEEEeeccCCCCC---Cc-eeeEEEEE--CCEEEEEecc
Q 036185 444 ARHSHSMLAY-G-SRLYMFGGYNGEKALGDLYTFDVH--ACLWKKEDIAARSPH---AR-FSHTMFLY--KNYLGLFGGC 513 (1057)
Q Consensus 444 ~r~~~s~~~~-~-~~lyv~GG~~~~~~~~~l~~yd~~--t~~W~~v~~~~~~P~---~R-~~hs~~~~--~~~l~i~GG~ 513 (1057)
.-.-..++.. + ..+|+..-. .+.+..|+.. +..|+.++.....|. .. ..+..+.. +..||+.-.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr- 264 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR- 264 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-
T ss_pred CCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-
Confidence 2222223333 3 468888643 3456666555 777777654443332 22 23333333 456777543
Q ss_pred CCCCCCCeEEEEEC--CCCeEEEeeccCC-CCCcccceEEEEeCC-EEEEEeCC
Q 036185 514 PVRQNYQELSLLDL--QLHIWKHLKLNYV-CKELFVRSTANVVDD-DLIMIGGG 563 (1057)
Q Consensus 514 ~~~~~~~~i~~yd~--~~~~W~~v~~~~~-~~~~~~~~~a~~~~~-~iyi~GGg 563 (1057)
..+.|.+|++ .+.+.+.+...+. +.. .++.+..-++ .+|+....
T Consensus 265 ----~~~sI~vf~~d~~~g~l~~~~~~~~~G~~--Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 265 ----GSNSISVFDLDPATGTLTLVQTVPTGGKF--PRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ----TTTEEEEEEECTTTTTEEEEEEEEESSSS--EEEEEE-TTSSEEEEEETT
T ss_pred ----cCCEEEEEEEecCCCceEEEEEEeCCCCC--ccEEEEeCCCCEEEEEecC
Confidence 3567888887 4456666654333 222 2344443344 45554433
No 422
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.93 E-value=1.9e+02 Score=33.98 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=101.2
Q ss_pred cccEEEEeCCCCcEE--EeccCCCCCCcc-ccEEEEE-CC-EEEEEcccCCCCCCCCcEEEEECCCC-----cEEEeecc
Q 036185 319 RNDLFLLDPLQGTIK--AIHTEGSPSPRL-GHTSSLI-GD-HMFIIGGRADPLNILSDVWVFNMAKS-----KWTLLECS 388 (1057)
Q Consensus 319 ~~d~~~yd~~t~~W~--~l~~~~~P~~R~-~hs~v~~-~~-~Iyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~ 388 (1057)
...+++....+..-. .+- ..+.+.. ...+... ++ .+++.-+... . .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvf--e~~~~~~~~~~~~~s~d~~~l~i~~~~~~--~-~s~v~~~d~~~~~~~~~~~~~l~~- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVF--EEPDEPFWFVSVSRSKDGRYLFISSSSGT--S-ESEVYLLDLDDGGSPDAKPKLLSP- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEE--C-TTCTTSEEEEEE-TTSSEEEEEEESSS--S-EEEEEEEECCCTTTSS-SEEEEEE-
T ss_pred CcEEEEEECCCChHhCeeEE--eecCCCcEEEEEEecCcccEEEEEEEccc--c-CCeEEEEeccccCCCcCCcEEEeC-
Confidence 556777777665432 111 2222222 2222222 33 4444433221 2 489999999875 7888852
Q ss_pred CCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCc---EEE-eecCCCCCCC-cceeEEEEECCEEEEEecC
Q 036185 389 GSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQ---WKE-LLINGEGPCA-RHSHSMLAYGSRLYMFGGY 463 (1057)
Q Consensus 389 g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~---W~~-~~~~g~~P~~-r~~~s~~~~~~~lyv~GG~ 463 (1057)
+..-..+.+...++.+|+.-.. ......+..+++.+.. |.. +.+ +.. ..-..+...++.|++..=.
T Consensus 275 ---~~~~~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~----~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 275 ---REDGVEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP----EDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp ---SSSS-EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEETTEEEEEEEE
T ss_pred ---CCCceEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcC----CCCceeEEEEEEECCEEEEEEEE
Confidence 2223333444558899988663 3344678889988765 764 432 222 2333445568888877543
Q ss_pred CCCcccCcEEEEECC-CCeEEEeeccCCCCCCceeeEEEEE----CCE-EEEEeccCCCCCCCeEEEEECCCCeEEEee
Q 036185 464 NGEKALGDLYTFDVH-ACLWKKEDIAARSPHARFSHTMFLY----KNY-LGLFGGCPVRQNYQELSLLDLQLHIWKHLK 536 (1057)
Q Consensus 464 ~~~~~~~~l~~yd~~-t~~W~~v~~~~~~P~~R~~hs~~~~----~~~-l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~ 536 (1057)
+ ....|.+||+. +..-..+ ++|.. +...... .+. .|.+.++. ....+|.||+.+++.+.+.
T Consensus 346 ~---~~~~l~v~~~~~~~~~~~~----~~p~~--g~v~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 346 N---GSSRLRVYDLDDGKESREI----PLPEA--GSVSGVSGDFDSDELRFSYSSFT---TPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp T---TEEEEEEEETT-TEEEEEE----ESSSS--SEEEEEES-TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEEE
T ss_pred C---CccEEEEEECCCCcEEeee----cCCcc--eEEeccCCCCCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEEE
Confidence 3 25579999998 3333333 22222 2111111 233 44455532 3458999999999988764
No 423
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=73.57 E-value=1e+02 Score=34.79 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=78.3
Q ss_pred CEEEEEcccC-CCC--CCC-CcEEEEECCCC-----cEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEE
Q 036185 354 DHMFIIGGRA-DPL--NIL-SDVWVFNMAKS-----KWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHV 424 (1057)
Q Consensus 354 ~~Iyv~GG~~-~~~--~~~-~~v~~yd~~t~-----~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~ 424 (1057)
...+++|..- .+. ... ..++.|+.... +++.+.. ...+-.-++.+.+++++++.-| +.++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g-------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG-------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET-------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec-------CEEEE
Confidence 3566666542 111 122 67999999885 5555542 2223335666677888666554 45888
Q ss_pred EECCCCc-EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE
Q 036185 425 LDTDTLQ-WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY 503 (1057)
Q Consensus 425 yD~~t~~-W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~ 503 (1057)
|++...+ |...... ..+-...++...++.|++---+.+ -.++.|+....+-..+ +..+.++...++..+
T Consensus 112 ~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~v---a~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILV---ARDYQPRWVTAAEFL 181 (321)
T ss_dssp EEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEE---EEESS-BEEEEEEEE
T ss_pred EEccCcccchhhhee---cceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEE---EecCCCccEEEEEEe
Confidence 8888777 8887763 334466677778886665422221 1245667766556665 334456666666666
Q ss_pred -CCEEEEEec
Q 036185 504 -KNYLGLFGG 512 (1057)
Q Consensus 504 -~~~l~i~GG 512 (1057)
++. .++++
T Consensus 182 ~d~~-~~i~~ 190 (321)
T PF03178_consen 182 VDED-TIIVG 190 (321)
T ss_dssp -SSS-EEEEE
T ss_pred cCCc-EEEEE
Confidence 554 44444
No 424
>PTZ00421 coronin; Provisional
Probab=73.16 E-value=2.2e+02 Score=34.53 Aligned_cols=154 Identities=9% Similarity=0.070 Sum_probs=74.5
Q ss_pred CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEE-ECCEEEEEcccCCCcccceEEEEECCCCcE
Q 036185 354 DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAV-IGSKIYVFGGLNNDTIFSSLHVLDTDTLQW 432 (1057)
Q Consensus 354 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~-~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W 432 (1057)
+.+++.||.++ .+.+||+.+..-...- .+ .. ..-.+.+. .++.+++.|+.++ .+.+||+.+.+-
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~~-h~--~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI-KC-HS--DQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE-cC-CC--CceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcE
Confidence 35777777654 6889998876532211 01 01 11112222 2567777787665 378899987653
Q ss_pred E-EeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCe--EEEeeccCCCCCCceeeEEEEE--CCEE
Q 036185 433 K-ELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACL--WKKEDIAARSPHARFSHTMFLY--KNYL 507 (1057)
Q Consensus 433 ~-~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~v~~~~~~P~~R~~hs~~~~--~~~l 507 (1057)
. .+... ...+........++..++..|.+.. .-..+..||+.+.. .... ..... ....+..+ ++.+
T Consensus 203 v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~----~~d~~-~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 203 VSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTV----DLDQS-SALFIPFFDEDTNL 273 (493)
T ss_pred EEEEecC---CCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEe----ccCCC-CceEEEEEcCCCCE
Confidence 2 22111 1111111222223344455554321 12458888876533 1111 00100 11222233 4556
Q ss_pred EEEeccCCCCCCCeEEEEECCCCeEEEe
Q 036185 508 GLFGGCPVRQNYQELSLLDLQLHIWKHL 535 (1057)
Q Consensus 508 ~i~GG~~~~~~~~~i~~yd~~~~~W~~v 535 (1057)
+++||.. -..+.+||+.+......
T Consensus 274 L~lggkg----Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 274 LYIGSKG----EGNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEeC----CCeEEEEEeeCCceEEE
Confidence 6666632 23588888888776544
No 425
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.73 E-value=23 Score=40.40 Aligned_cols=94 Identities=17% Similarity=0.003 Sum_probs=60.6
Q ss_pred ccCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC
Q 036185 892 LDCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG 970 (1057)
Q Consensus 892 ~~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~ 970 (1057)
.+.+|++||=..+ ++|.+++.+|+..|+ +|++++.+++..+.+++ .|.+. ++..+ +. ....+|.++..
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~-~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGGAY--DT-PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecccc--cc-CcccceEEEEC
Confidence 3567888887764 366666777766777 59999999998777665 45431 12111 11 11246765543
Q ss_pred CCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 971 LIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 971 ~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
- +. ...+..+++.++ +||.+.++...
T Consensus 231 ~-~~-~~~~~~~~~~l~-~~G~~v~~G~~ 256 (329)
T TIGR02822 231 A-PA-GGLVPPALEALD-RGGVLAVAGIH 256 (329)
T ss_pred C-Cc-HHHHHHHHHhhC-CCcEEEEEecc
Confidence 2 22 246888999998 69998888763
No 426
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.52 E-value=4.5 Score=42.71 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=61.7
Q ss_pred CCCEEEEecCcccHhHHHHHHhC-------CC--cEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC------
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRA-------KA--RLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA------ 959 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~-------~a--~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~------ 959 (1057)
.=++|+||+|--|.++..++++. +. +.++|||+.|-| -++ .|.-+++|....-
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHH
Confidence 34689999999999999887542 11 139999998743 344 3777889875432
Q ss_pred ---CCCCccEEEECCCCCCh-----------hHHHHH----HHHhhCCCcEEEEEccccc
Q 036185 960 ---PKGVANRVCLGLIPTSE-----------NSWVTA----VQALRSEGGTLHVHGNVKD 1001 (1057)
Q Consensus 960 ---~~~~~D~Vil~~~P~~~-----------~~~~~a----~~~l~~~gg~l~~~~~~~~ 1001 (1057)
.+.++|+||+|--|... +.+..| ..+|+ +||..+---|...
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGR 167 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccC
Confidence 25689999999877641 113333 33445 6887665555443
No 427
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=72.44 E-value=14 Score=41.94 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEEC----C
Q 036185 896 DEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLG----L 971 (1057)
Q Consensus 896 g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil~----~ 971 (1057)
-...+|+++|+|..+-.++ + ...+|-+++.+..-+-.+..+.. -| |+.+.||-++-.| +.|.|+|- -
T Consensus 178 v~~avDvGgGiG~v~k~ll-~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLL-S-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP--KGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHH-H-hCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCC--CcCeEEEEeeccc
Confidence 3789999999999998887 3 66679999999988888887765 33 6678899888765 35777662 2
Q ss_pred CCCC--hhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 972 IPTS--ENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 972 ~P~~--~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.+.. .+++......|. +||.|.+-+++.
T Consensus 249 wtDedcvkiLknC~~sL~-~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLP-PGGKIIVVENVT 278 (342)
T ss_pred CChHHHHHHHHHHHHhCC-CCCEEEEEeccC
Confidence 2332 566888888887 688888888844
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=72.35 E-value=1.8e+02 Score=32.95 Aligned_cols=241 Identities=11% Similarity=0.167 Sum_probs=98.4
Q ss_pred ceeeEEEEecCCCcCcccccceEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCC-cc-c
Q 036185 269 GLSVSRIVIAGEPVEKLFLWGHSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSP-RL-G 346 (1057)
Q Consensus 269 ~l~w~~l~~~~~~~~~~~R~ghsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~-R~-~ 346 (1057)
.-+|..+.+.... ++ ......+. +.-|++|-.+. ++.=+=--.+|...... .+.+ .. .
T Consensus 5 ~~~W~~v~l~t~~--~l----~dV~F~d~----~~G~~VG~~g~---------il~T~DGG~tW~~~~~~-~~~~~~~~l 64 (302)
T PF14870_consen 5 GNSWQQVSLPTDK--PL----LDVAFVDP----NHGWAVGAYGT---------ILKTTDGGKTWQPVSLD-LDNPFDYHL 64 (302)
T ss_dssp S--EEEEE-S-SS---E----EEEEESSS----S-EEEEETTTE---------EEEESSTTSS-EE------S-----EE
T ss_pred CCCcEEeecCCCC--ce----EEEEEecC----CEEEEEecCCE---------EEEECCCCccccccccC-CCccceeeE
Confidence 4578888865443 21 33444332 46888875321 22211123579887632 2222 22 3
Q ss_pred cEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE-CCEEEEEcccCCCcccceEEEE
Q 036185 347 HTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI-GSKIYVFGGLNNDTIFSSLHVL 425 (1057)
Q Consensus 347 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~-~~~iyv~GG~~~~~~~~~v~~y 425 (1057)
+++...++..|+.|-. + -++.-.-.-.+|++++... +.|...+....+ ++.++++|.. ..+++=
T Consensus 65 ~~I~f~~~~g~ivG~~-g------~ll~T~DgG~tW~~v~l~~--~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T 129 (302)
T PF14870_consen 65 NSISFDGNEGWIVGEP-G------LLLHTTDGGKTWERVPLSS--KLPGSPFGITALGDGSAELAGDR------GAIYRT 129 (302)
T ss_dssp EEEEEETTEEEEEEET-T------EEEEESSTTSS-EE----T--T-SS-EEEEEEEETTEEEEEETT--------EEEE
T ss_pred EEEEecCCceEEEcCC-c------eEEEecCCCCCcEEeecCC--CCCCCeeEEEEcCCCcEEEEcCC------CcEEEe
Confidence 3444457888988642 1 2343333567899986432 233333444443 5667776543 224444
Q ss_pred ECCCCcEEEeecCCCCCCCcceeEEEEE-CCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE-
Q 036185 426 DTDTLQWKELLINGEGPCARHSHSMLAY-GSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY- 503 (1057)
Q Consensus 426 D~~t~~W~~~~~~g~~P~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~- 503 (1057)
.-.-.+|+.+... ..-.-..+... ++++++++ ..+. -+...|+-...|.... .+..|.-.+|...
T Consensus 130 ~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs-~~G~----~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 130 TDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVS-SRGN----FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSP 196 (302)
T ss_dssp SSTTSSEEEEE-S--------EEEEEE-TTS-EEEEE-TTSS----EEEEE-TT-SS-EEEE------SSS-EEEEEE-T
T ss_pred CCCCCCeeEcccC----CcceeEeEEECCCCcEEEEE-Cccc----EEEEecCCCccceEEc----cCccceehhceecC
Confidence 4456789988652 11222223333 44555454 3332 1335677777898862 3344444555444
Q ss_pred CCEEEEEeccCCCCCCCeEEEEE--CCCCeEEEeeccCCCCCcccc-eEEEE-eCCEEEEEeCCCc
Q 036185 504 KNYLGLFGGCPVRQNYQELSLLD--LQLHIWKHLKLNYVCKELFVR-STANV-VDDDLIMIGGGAA 565 (1057)
Q Consensus 504 ~~~l~i~GG~~~~~~~~~i~~yd--~~~~~W~~v~~~~~~~~~~~~-~~a~~-~~~~iyi~GGg~~ 565 (1057)
++.++++. .. ..++.=+ -...+|.+...+. . ..... ..++. -++.+|+.||..+
T Consensus 197 ~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~~~-~-~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 197 DGNLWMLA-RG-----GQIQFSDDPDDGETWSEPIIPI-K-TNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp TS-EEEEE-TT-----TEEEEEE-TTEEEEE---B-TT-S-S--S-EEEEEESSSS-EEEEESTT-
T ss_pred CCCEEEEe-CC-----cEEEEccCCCCccccccccCCc-c-cCceeeEEEEecCCCCEEEEeCCcc
Confidence 55666654 11 1444444 3445777732111 0 11111 12222 3688999999754
No 429
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=71.81 E-value=1.8e+02 Score=32.85 Aligned_cols=192 Identities=8% Similarity=-0.023 Sum_probs=83.8
Q ss_pred ccEEEEeCC-CCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeeccCCCCCc
Q 036185 320 NDLFLLDPL-QGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECSGSVFQP 394 (1057)
Q Consensus 320 ~d~~~yd~~-t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~ 394 (1057)
+.+..|+.. ++++........+ -.-+.++.. +..+|+.. +. .+.+.+||+.++. ...+. ..+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~--~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~ 125 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLP--GSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGL 125 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCC--CCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCC
Confidence 456666664 4566654422222 111223222 33566653 21 2567788876431 12222 11122
Q ss_pred ccceEEEEE-CC-EEEEEcccCCCcccceEEEEECCCCc-EEEeec-CCCCCCCcceeEEEEE--CCEEEEEecCCCCcc
Q 036185 395 RHRHAAAVI-GS-KIYVFGGLNNDTIFSSLHVLDTDTLQ-WKELLI-NGEGPCARHSHSMLAY--GSRLYMFGGYNGEKA 468 (1057)
Q Consensus 395 R~~hsa~~~-~~-~iyv~GG~~~~~~~~~v~~yD~~t~~-W~~~~~-~g~~P~~r~~~s~~~~--~~~lyv~GG~~~~~~ 468 (1057)
..-|.+++. ++ .+|+..- ..+.+.+||+.+.. ...... .-..+....-+.++.. +..+|+.-. .
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----~ 195 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----L 195 (330)
T ss_pred CcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----C
Confidence 233554444 33 4665432 22468899987632 221000 0001111111223332 235777632 2
Q ss_pred cCcEEEEECC--CCeEEEeeccCCC----CCCceeeEEEEE--CCEEEEEeccCCCCCCCeEEEEEC--CCCeEEEeec
Q 036185 469 LGDLYTFDVH--ACLWKKEDIAARS----PHARFSHTMFLY--KNYLGLFGGCPVRQNYQELSLLDL--QLHIWKHLKL 537 (1057)
Q Consensus 469 ~~~l~~yd~~--t~~W~~v~~~~~~----P~~R~~hs~~~~--~~~l~i~GG~~~~~~~~~i~~yd~--~~~~W~~v~~ 537 (1057)
.+.+..||+. +.+++.+...... +.++....+... +..+|+... ..+.+.+|++ ....++.+..
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEE
Confidence 3567777775 4455444332222 233433223322 345666522 2345666665 4445655543
No 430
>PTZ00421 coronin; Provisional
Probab=71.61 E-value=2.2e+02 Score=34.65 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=35.9
Q ss_pred CEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEE-EECCEEEEEecCCCCcccCcEEEEECCCCe
Q 036185 405 SKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSML-AYGSRLYMFGGYNGEKALGDLYTFDVHACL 481 (1057)
Q Consensus 405 ~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~ 481 (1057)
+.+++.||.++ .+.+||+.+.+-...-. + .... -.++. ..++.+++.|+.++ .+.+||+.+..
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~l~-~-h~~~--V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEVIK-C-HSDQ--ITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEEEc-C-CCCc--eEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 35777777665 37889988765322111 0 0111 11222 23567777777654 47889988765
No 431
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.51 E-value=1.5e+02 Score=32.99 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=69.3
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcceeEEE------EECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCC
Q 036185 419 FSSLHVLDTDTLQWKELLINGEGPCARHSHSML------AYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSP 492 (1057)
Q Consensus 419 ~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~------~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P 492 (1057)
++-++.||.++++-+.+=..+ ...++....=+ .+++.||+.-+ +| ..---+|..|..+..-+.+... |
T Consensus 77 YSHVH~yd~e~~~VrLLWkes-ih~~~~WaGEVSdIlYdP~~D~LLlAR~-DG-h~nLGvy~ldr~~g~~~~L~~~---p 150 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKES-IHDKTKWAGEVSDILYDPYEDRLLLARA-DG-HANLGVYSLDRRTGKAEKLSSN---P 150 (339)
T ss_pred cceEEEEEcCCCeEEEEEecc-cCCccccccchhheeeCCCcCEEEEEec-CC-cceeeeEEEcccCCceeeccCC---C
Confidence 456899999888743332110 11122222211 24577877643 22 2233589999999888776322 2
Q ss_pred CCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeE--EEeeccCCC---CC-cccceEEEEeCCEEEEEeCC
Q 036185 493 HARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIW--KHLKLNYVC---KE-LFVRSTANVVDDDLIMIGGG 563 (1057)
Q Consensus 493 ~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W--~~v~~~~~~---~~-~~~~~~a~~~~~~iyi~GGg 563 (1057)
.. -.+...+...+-+ .+.....+.+.+||+.+.+| ...+..... +. .+....++...+++|.|-+|
T Consensus 151 s~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG 222 (339)
T PF09910_consen 151 SL---KGTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG 222 (339)
T ss_pred Cc---CceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec
Confidence 22 1222223333322 23344577999999999999 444322111 11 11123345566777765554
No 432
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=70.90 E-value=8.6 Score=43.68 Aligned_cols=54 Identities=24% Similarity=0.130 Sum_probs=39.4
Q ss_pred HHHHHHHhhcc------CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHH
Q 036185 883 LSEKLRMARLD------CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKH 937 (1057)
Q Consensus 883 ~~er~r~~~~~------~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~ 937 (1057)
+.|-.++.+.+ .+-+.|+|+++|.|+++-.++- .-.-.|+|||-|..+.+.+++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHH
Confidence 44555555543 3457899999999999988873 334469999999887776554
No 433
>PLN02740 Alcohol dehydrogenase-like
Probab=69.89 E-value=29 Score=40.47 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=60.3
Q ss_pred ccCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC-----ccccC---CCC
Q 036185 892 LDCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD-----NRFTA---PKG 962 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D-----~~~~~---~~~ 962 (1057)
.+..|++||=..+| +|.+++.+|+..|+++|+++|.+++-++.+++ -|.+. ++..+ ..+.+ ...
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD---FINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE---EEecccccchHHHHHHHHhCC
Confidence 35678888877543 45555566666777679999999998888865 34431 22211 11111 112
Q ss_pred CccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 963 VANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 963 ~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
.+|+|+=.. . ....+..++..+++.+|.+++.+..
T Consensus 268 g~dvvid~~-G-~~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 268 GVDYSFECA-G-NVEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CCCEEEECC-C-ChHHHHHHHHhhhcCCCEEEEEccC
Confidence 578775322 2 2356788888887433888777654
No 434
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=69.49 E-value=9.4 Score=37.04 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=47.1
Q ss_pred cEEEEeCCccccCC--CCCccEEEECCC-CCC------hhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHH
Q 036185 947 HCIVLEGDNRFTAP--KGVANRVCLGLI-PTS------ENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYE 1017 (1057)
Q Consensus 947 ~v~~~~~D~~~~~~--~~~~D~Vil~~~-P~~------~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~ 1017 (1057)
++.++.||+++.++ ...+|.|++|.+ |.. .+.+....++++ +||++..|+... .+++
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~-~~~~l~Tys~a~-------------~Vr~ 97 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSK-PGGTLATYSSAG-------------AVRR 97 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEE-EEEEEEES--BH-------------HHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhC-CCcEEEEeechH-------------HHHH
Confidence 45788999988776 367999999973 221 344555566666 799999988864 3566
Q ss_pred HHHhcCCceeeeeeEEEEeEeecCCceE
Q 036185 1018 IARSEGHRWEVTIEHIERVKWYAPHIRH 1045 (1057)
Q Consensus 1018 ~~~~~g~~~~~~~~~~~~Vk~~aP~~~h 1045 (1057)
.+...|+. |+++.-+ +++.+
T Consensus 98 ~L~~aGF~-------v~~~~g~-g~Kr~ 117 (124)
T PF05430_consen 98 ALQQAGFE-------VEKVPGF-GRKRE 117 (124)
T ss_dssp HHHHCTEE-------EEEEE-S-TTSSE
T ss_pred HHHHcCCE-------EEEcCCC-CCcch
Confidence 67788875 4556655 44444
No 435
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=69.06 E-value=1.7e+02 Score=31.57 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=81.3
Q ss_pred cEEEeccC---CCCCCccccEEEE-ECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEEC-C
Q 036185 331 TIKAIHTE---GSPSPRLGHTSSL-IGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIG-S 405 (1057)
Q Consensus 331 ~W~~l~~~---~~P~~R~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~-~ 405 (1057)
.|+...+. ..+.|-....... -.|.|+..||- ..+|..|+++++-++.- .-..-|-|+.+.-+ +
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeecccC
Confidence 46654422 2234444333332 35788888874 25889999999887763 11233455555422 2
Q ss_pred EEEEEcccCCCcccceEEEEECCCCcEEEe-ecCCCCCCCc--cee--EEEEECCEEEEEecCCCCcccCcEEEEECCCC
Q 036185 406 KIYVFGGLNNDTIFSSLHVLDTDTLQWKEL-LINGEGPCAR--HSH--SMLAYGSRLYMFGGYNGEKALGDLYTFDVHAC 480 (1057)
Q Consensus 406 ~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~-~~~g~~P~~r--~~~--s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~ 480 (1057)
.=++.|+.++. +-++|..|.+-.+. .+.......| .+. .+...+....+.||... +-.+++..-
T Consensus 169 ~qilsG~EDGt-----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss 237 (325)
T KOG0649|consen 169 GQILSGAEDGT-----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS 237 (325)
T ss_pred cceeecCCCcc-----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence 24455666654 77888888775443 3322212222 222 44555667778877432 334444443
Q ss_pred eEEEeeccCCCCCCceeeEEEEECCEEEEEe
Q 036185 481 LWKKEDIAARSPHARFSHTMFLYKNYLGLFG 511 (1057)
Q Consensus 481 ~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~G 511 (1057)
+-+.+ .|.|-.-|-+..+++.+++.|
T Consensus 238 e~t~v-----fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 238 ESTCV-----FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred CceEE-----EecccceeEeeeecceEEEec
Confidence 33332 233333344455667776666
No 436
>PLN00181 protein SPA1-RELATED; Provisional
Probab=68.85 E-value=3.5e+02 Score=34.99 Aligned_cols=143 Identities=7% Similarity=0.025 Sum_probs=69.7
Q ss_pred CCEEEEEcccCCCCCCCCcEEEEECCCCcE-EEeeccCCCCCcccceEEEEE---CCEEEEEcccCCCcccceEEEEECC
Q 036185 353 GDHMFIIGGRADPLNILSDVWVFNMAKSKW-TLLECSGSVFQPRHRHAAAVI---GSKIYVFGGLNNDTIFSSLHVLDTD 428 (1057)
Q Consensus 353 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~R~~hsa~~~---~~~iyv~GG~~~~~~~~~v~~yD~~ 428 (1057)
++.+++.||.++ .+.+||+.+..- ..+.. .....++.+ ++..++.|+.++ .+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSADH-----KVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECC
Confidence 456777777654 588889876542 22221 111122222 456777887664 48899987
Q ss_pred CCc--EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCC----eEEEeeccCCCCCCceeeEEEE
Q 036185 429 TLQ--WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHAC----LWKKEDIAARSPHARFSHTMFL 502 (1057)
Q Consensus 429 t~~--W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~----~W~~v~~~~~~P~~R~~hs~~~ 502 (1057)
+.. ...+... ..+ -..+...++..++.|+.++ .+..||+.+. .|..+....... ......+..
T Consensus 649 ~~~~~~~~~~~h---~~~--V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh~-~~i~~v~~s 717 (793)
T PLN00181 649 NPKLPLCTMIGH---SKT--VSYVRFVDSSTLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGHT-NVKNFVGLS 717 (793)
T ss_pred CCCccceEecCC---CCC--EEEEEEeCCCEEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCCC-CCeeEEEEc
Confidence 643 2222111 111 1122234566677777654 3667776542 232221111000 111111222
Q ss_pred ECCEEEEEeccCCCCCCCeEEEEECCC
Q 036185 503 YKNYLGLFGGCPVRQNYQELSLLDLQL 529 (1057)
Q Consensus 503 ~~~~l~i~GG~~~~~~~~~i~~yd~~~ 529 (1057)
.++.+++.|+.+ ..+.+|+...
T Consensus 718 ~~~~~lasgs~D-----~~v~iw~~~~ 739 (793)
T PLN00181 718 VSDGYIATGSET-----NEVFVYHKAF 739 (793)
T ss_pred CCCCEEEEEeCC-----CEEEEEECCC
Confidence 245677777743 3577777654
No 437
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=68.81 E-value=29 Score=39.87 Aligned_cols=98 Identities=14% Similarity=0.024 Sum_probs=59.2
Q ss_pred CCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEec---CHHHHHHHHHHHHHcCCCccEEEEeCCccccCCCCCccEEEE
Q 036185 894 CKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEW---NPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCL 969 (1057)
Q Consensus 894 ~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~---n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~~~~~D~Vil 969 (1057)
..|++|+=.++| +|.+++.+|+..|+ +|++++. ++...+.+++ .|.+ .+.....|..+......+|+|+=
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEEEE
Confidence 467888777654 56667777766777 5999987 6777776654 3432 12111111111011235787764
Q ss_pred CCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 970 GLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 970 ~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
.. . ....+..+++.++ ++|.+.++....
T Consensus 245 ~~-g-~~~~~~~~~~~l~-~~G~~v~~G~~~ 272 (355)
T cd08230 245 AT-G-VPPLAFEALPALA-PNGVVILFGVPG 272 (355)
T ss_pred Cc-C-CHHHHHHHHHHcc-CCcEEEEEecCC
Confidence 33 3 2346888999998 688888777644
No 438
>PRK01742 tolB translocation protein TolB; Provisional
Probab=68.62 E-value=2.5e+02 Score=33.26 Aligned_cols=140 Identities=8% Similarity=0.024 Sum_probs=70.4
Q ss_pred CcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCEEEEEcc-cCCCcccceEEEEECCCCcEEEeecCCCCCCCccee
Q 036185 370 SDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGG-LNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSH 448 (1057)
Q Consensus 370 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG-~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~ 448 (1057)
..+|++|..++.-+.+.. .+. .....+..-+++.++++. .++. .++|.+|+.+.....+.... . ....
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~---~-~~~~ 296 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGA---G-NNTE 296 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCC---C-CcCC
Confidence 469999998877666542 111 111112222454344433 2322 35899999888877765421 1 1111
Q ss_pred EEEEECCE-EEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEEC
Q 036185 449 SMLAYGSR-LYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDL 527 (1057)
Q Consensus 449 s~~~~~~~-lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~ 527 (1057)
....-+++ |++....++ ...+|.+|..+..-..+. . .. . .....-+++.+++.+. +.++.+|+
T Consensus 297 ~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~---~~-~-~~~~SpDG~~ia~~~~------~~i~~~Dl 360 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--G---RG-Y-SAQISADGKTLVMING------DNVVKQDL 360 (429)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--C---CC-C-CccCCCCCCEEEEEcC------CCEEEEEC
Confidence 22223444 444433222 246888887665443331 1 01 1 1111114443334331 36888999
Q ss_pred CCCeEEEee
Q 036185 528 QLHIWKHLK 536 (1057)
Q Consensus 528 ~~~~W~~v~ 536 (1057)
.+..+..+.
T Consensus 361 ~~g~~~~lt 369 (429)
T PRK01742 361 TSGSTEVLS 369 (429)
T ss_pred CCCCeEEec
Confidence 999888764
No 439
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=68.16 E-value=17 Score=38.45 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=63.7
Q ss_pred HHhhccCCCCEEEEecCcccHhHHHHHH---hC-CCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC---
Q 036185 888 RMARLDCKDEVIVDLFAGIGYFVLPFLV---RA-KARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--- 960 (1057)
Q Consensus 888 r~~~~~~~g~~VlDlf~G~G~fsl~~a~---~~-~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--- 960 (1057)
+++..+++ ++|+.++.--|+=++..|. .. +..+|++||++......... +...+..+|++++||..+...
T Consensus 26 eli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 26 ELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp HHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSSTHHHHT
T ss_pred HHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCHHHHHH
Confidence 34444454 6999999999887776652 12 44689999995443321111 112344689999999765321
Q ss_pred ------CCCccEEEECCCCCCh----hHHHHHHHHhhCCCcEEEEEcccccchh------HHH--HHHHHHHHHHHHHhc
Q 036185 961 ------KGVANRVCLGLIPTSE----NSWVTAVQALRSEGGTLHVHGNVKDSEE------KLW--AEHVSKSIYEIARSE 1022 (1057)
Q Consensus 961 ------~~~~D~Vil~~~P~~~----~~~~~a~~~l~~~gg~l~~~~~~~~~~~------~~~--~~~~~~~i~~~~~~~ 1022 (1057)
......||+|- -+.. ..+..-..++. +|+++++.+..-+.-. .+| ......++.+..+++
T Consensus 103 v~~~~~~~~~vlVilDs-~H~~~hvl~eL~~y~plv~-~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~ 180 (206)
T PF04989_consen 103 VRELASPPHPVLVILDS-SHTHEHVLAELEAYAPLVS-PGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEH 180 (206)
T ss_dssp SGSS----SSEEEEESS-----SSHHHHHHHHHHT---TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTT
T ss_pred HHHhhccCCceEEEECC-CccHHHHHHHHHHhCccCC-CCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHC
Confidence 22356888887 3332 33444334444 7999988776432211 111 122466788888776
Q ss_pred CC
Q 036185 1023 GH 1024 (1057)
Q Consensus 1023 g~ 1024 (1057)
.-
T Consensus 181 ~~ 182 (206)
T PF04989_consen 181 PD 182 (206)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 440
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.00 E-value=2e+02 Score=31.83 Aligned_cols=185 Identities=11% Similarity=0.062 Sum_probs=97.5
Q ss_pred cEEEEeCCCCcEEEeccCCCCCCccccEEEEEC--CEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccce
Q 036185 321 DLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIG--DHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398 (1057)
Q Consensus 321 d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~--~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~h 398 (1057)
-+-++|+++...++.+.+ ...+-.+.-..+++ +.++..|- .+.. =++|+.++.-+..+ .|..-.-+
T Consensus 125 aI~R~dpkt~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q-~G~y------GrLdPa~~~i~vfp----aPqG~gpy 192 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQ-IGAY------GRLDPARNVISVFP----APQGGGPY 192 (353)
T ss_pred eeEEecCcccceEEeecc-cccCCCcccceeeCCCccEEEeec-cccc------eecCcccCceeeec----cCCCCCCc
Confidence 677889988888777533 11111222223332 45666543 2211 15677666554442 23333333
Q ss_pred EEEE-ECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeE-EEE--ECCEEEEEecCCCCcccCcEEE
Q 036185 399 AAAV-IGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHS-MLA--YGSRLYMFGGYNGEKALGDLYT 474 (1057)
Q Consensus 399 sa~~-~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s-~~~--~~~~lyv~GG~~~~~~~~~l~~ 474 (1057)
..|+ -++.+|+..= .-|-+-..|+.+..=+.++. |.+....+ -+- -.+.+++. ......+++
T Consensus 193 Gi~atpdGsvwyasl-----agnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wit-----twg~g~l~r 258 (353)
T COG4257 193 GICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHR 258 (353)
T ss_pred ceEECCCCcEEEEec-----cccceEEcccccCCcceecC----CCcccccccccccCccCcEEEe-----ccCCceeeE
Confidence 3343 3677776521 12346777887776555543 33311111 111 12455555 122346999
Q ss_pred EECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeecc
Q 036185 475 FDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLN 538 (1057)
Q Consensus 475 yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~ 538 (1057)
||+++.+|..-...+.- +|-...-+--.+.+++- .-..+.+.+||+++.+.+.++.+
T Consensus 259 fdPs~~sW~eypLPgs~--arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 259 FDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eCcccccceeeeCCCCC--CCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecCC
Confidence 99999999986332222 22222222223455542 12356799999999999998754
No 441
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=67.71 E-value=2.3e+02 Score=32.97 Aligned_cols=231 Identities=14% Similarity=0.138 Sum_probs=101.9
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCC-CccccEEEEECCEEEEE-cccCCCCCCCCcEEEEECCCC
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPS-PRLGHTSSLIGDHMFII-GGRADPLNILSDVWVFNMAKS 380 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~-~R~~hs~v~~~~~Iyv~-GG~~~~~~~~~~v~~yd~~t~ 380 (1057)
+-++|+|... ....+|.+|+.+++-.++. ..+. ...+-..+.-+..+|.+ .| ..++..|+.|.
T Consensus 48 ~kllF~s~~d-----g~~nly~lDL~t~~i~QLT--dg~g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~ 112 (386)
T PF14583_consen 48 RKLLFASDFD-----GNRNLYLLDLATGEITQLT--DGPGDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTL 112 (386)
T ss_dssp -EEEEEE-TT-----SS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT-
T ss_pred CEEEEEeccC-----CCcceEEEEcccCEEEECc--cCCCCCccceEEecCCCeEEEEECC--------CeEEEEECCcC
Confidence 5566665322 2467899999999999987 3332 22332222224465444 33 36889999887
Q ss_pred cEEEeeccCCCCCcccceEEEEEC--CEEEEEccc----C--------------CCcccceEEEEECCCCcEEEeecCCC
Q 036185 381 KWTLLECSGSVFQPRHRHAAAVIG--SKIYVFGGL----N--------------NDTIFSSLHVLDTDTLQWKELLINGE 440 (1057)
Q Consensus 381 ~W~~~~~~g~~p~~R~~hsa~~~~--~~iyv~GG~----~--------------~~~~~~~v~~yD~~t~~W~~~~~~g~ 440 (1057)
+=+.+- ..|..-.+....+.+ ++. ++|=. + .......+...|+.+++.+.+-....
T Consensus 113 e~~~vy---~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 113 EERVVY---EVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp -EEEEE---E--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred cEEEEE---ECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence 755554 233332222333332 222 11110 0 02345668899999999888755311
Q ss_pred CCCCcceeEEEE-ECCEEEEEecCCCCccc-CcEEEEECCCCeEEEeeccCCCCCCceeeEEEEECCEEEEEeccCCCCC
Q 036185 441 GPCARHSHSMLA-YGSRLYMFGGYNGEKAL-GDLYTFDVHACLWKKEDIAARSPHARFSHTMFLYKNYLGLFGGCPVRQN 518 (1057)
Q Consensus 441 ~P~~r~~~s~~~-~~~~lyv~GG~~~~~~~-~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~ 518 (1057)
-.+|--.. .+..+++|-=-..-... ..||..|........+. ...+.-..+|-...-++..+.+=++...+.
T Consensus 189 ----wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 189 ----WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp -----EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred ----cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--cCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 12333222 34456666322222223 47999998876666652 233444556666666665444333322233
Q ss_pred CCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEEEEeCC
Q 036185 519 YQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLIMIGGG 563 (1057)
Q Consensus 519 ~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iyi~GGg 563 (1057)
-.-+..||+.+..=+.+..++ ...|-....++++++-=|+
T Consensus 263 ~~~i~~~d~~t~~~~~~~~~p-----~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 263 DFWIAGYDPDTGERRRLMEMP-----WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp -EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-
T ss_pred ceEEEeeCCCCCCceEEEeCC-----ceeeeEEcCCCCEEEecCC
Confidence 335778999887544443221 2334444556676654444
No 442
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=67.33 E-value=18 Score=41.19 Aligned_cols=100 Identities=17% Similarity=0.019 Sum_probs=59.6
Q ss_pred cCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC---ccccCCCCCccEEE
Q 036185 893 DCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD---NRFTAPKGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D---~~~~~~~~~~D~Vi 968 (1057)
+.+|++||=..+ ++|.+++.+|+..|++.|++++.+++-.+.+++ .+.+.-+.....+ ..+......+|.|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 356888877744 245555666666788779999999998877754 3443111111111 11122233588876
Q ss_pred ECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 969 LGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 969 l~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
-.. . ....+..+++.|+ ++|.+.+....
T Consensus 237 d~~-g-~~~~~~~~~~~l~-~~G~~v~~g~~ 264 (339)
T cd08239 237 ECS-G-NTAARRLALEAVR-PWGRLVLVGEG 264 (339)
T ss_pred ECC-C-CHHHHHHHHHHhh-cCCEEEEEcCC
Confidence 332 2 3445678888898 68888777654
No 443
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.48 E-value=30 Score=38.29 Aligned_cols=97 Identities=16% Similarity=0.013 Sum_probs=58.0
Q ss_pred CCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC---ccccCCCCCccEEEE
Q 036185 894 CKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD---NRFTAPKGVANRVCL 969 (1057)
Q Consensus 894 ~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D---~~~~~~~~~~D~Vil 969 (1057)
.+|++||=..+| +|.+++.+|+..|+++|+++|.+++-.+.+++ .+.+ .+.-.... +.+......+|+|+=
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 367888777542 44455556666777779999999988887765 3432 11100100 111112234788763
Q ss_pred CCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 970 GLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 970 ~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
.. . ....+..+++.++ ++|.+.....
T Consensus 194 ~~-G-~~~~~~~~~~~l~-~~G~iv~~G~ 219 (280)
T TIGR03366 194 FS-G-ATAAVRACLESLD-VGGTAVLAGS 219 (280)
T ss_pred CC-C-ChHHHHHHHHHhc-CCCEEEEecc
Confidence 22 2 2456788899998 6888877775
No 444
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.45 E-value=10 Score=42.14 Aligned_cols=46 Identities=20% Similarity=0.084 Sum_probs=35.6
Q ss_pred ccCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHH
Q 036185 892 LDCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKH 937 (1057)
Q Consensus 892 ~~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~ 937 (1057)
.+.+|.+|.-++.| +|.-.+.-|+.+||.++++||+|++-.+.+++
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 46789988877665 44444455566889999999999999998876
No 445
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=66.20 E-value=2.1e+02 Score=31.41 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=102.7
Q ss_pred CCEEEEEcccCCCCCCCCcEEEEEC-----CCCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEEC
Q 036185 353 GDHMFIIGGRADPLNILSDVWVFNM-----AKSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDT 427 (1057)
Q Consensus 353 ~~~Iyv~GG~~~~~~~~~~v~~yd~-----~t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~ 427 (1057)
++++|++.|..+. .++.|.. ..+.+...- .+|.+-.+.+.+++++.+|.--. ..+.+.+||+
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec-----CCceEEEEEC
Confidence 4678888886552 5555532 222222222 35566667777778888877533 3567999999
Q ss_pred CCCcEE---EeecCCC---CCCCcceeE---EEEECCEEEEEecCCCCcccCcEEEEECCCC----eEEEeeccCCCCCC
Q 036185 428 DTLQWK---ELLINGE---GPCARHSHS---MLAYGSRLYMFGGYNGEKALGDLYTFDVHAC----LWKKEDIAARSPHA 494 (1057)
Q Consensus 428 ~t~~W~---~~~~~g~---~P~~r~~~s---~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~----~W~~v~~~~~~P~~ 494 (1057)
.+..-. .++..+. .|....+++ .++-++-|+++-...+....--+-.+|+.+. +|.. ..+.+
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~k~ 171 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYPKR 171 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccCch
Confidence 988755 3322211 111112222 2233445666644433221223445666654 4553 23333
Q ss_pred ceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEe---CCEEEEEeCC
Q 036185 495 RFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVV---DDDLIMIGGG 563 (1057)
Q Consensus 495 R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~---~~~iyi~GGg 563 (1057)
. ...+.++-|.||++...+... ..-.+.||+.+++=..+..+- +.+....++.-. +.+||+.--|
T Consensus 172 ~-~~naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f--~~~~~~~~~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 172 S-AGNAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPF--PNPYGNISMLSYNPRDKKLYAWDNG 239 (250)
T ss_pred h-hcceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeee--ccccCceEeeeECCCCCeEEEEECC
Confidence 3 334666788899987754433 445688999988776554321 122223343333 4678887655
No 446
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.19 E-value=22 Score=41.34 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=64.7
Q ss_pred EEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC----CCCccEEEECCC
Q 036185 898 VIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP----KGVANRVCLGLI 972 (1057)
Q Consensus 898 ~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~----~~~~D~Vil~~~ 972 (1057)
.||=++|| +|.-....++..+...|+..|-+++..+.+..+... ++++++-|+.+.-. -..+|+||--.+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 56777773 444444443345557899999999999888776432 67888888877522 123587776653
Q ss_pred CCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 973 PTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 973 P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
|+-...+.+|+ ++ -|+ |+-+.+...+. ...+.+.|++.|..
T Consensus 78 ~~~~~~i~ka~--i~--~gv-~yvDts~~~~~-------~~~~~~~a~~Agit 118 (389)
T COG1748 78 PFVDLTILKAC--IK--TGV-DYVDTSYYEEP-------PWKLDEEAKKAGIT 118 (389)
T ss_pred chhhHHHHHHH--HH--hCC-CEEEcccCCch-------hhhhhHHHHHcCeE
Confidence 44444333333 22 333 44444433322 13566677777754
No 447
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=65.39 E-value=38 Score=36.91 Aligned_cols=104 Identities=19% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCC-----ccEE---EEeCCccccCC-CCC-c
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVS-----DHCI---VLEGDNRFTAP-KGV-A 964 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~-----~~v~---~~~~D~~~~~~-~~~-~ 964 (1057)
....||.++||+|--++.+|...++ .|.. .-.|..++.++.|...|++. +.+. ...+++..... ... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~-~v~l-tD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGA-EVVL-TDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcc-eecc-CCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4567999999999999988843444 3544 44677888888887666643 2232 22233322211 223 7
Q ss_pred cEEEECCC---CCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 965 NRVCLGLI---PTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 965 D~Vil~~~---P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|+|+.... |++-..+...++.|...++++++..--+
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 88877542 2333335555554443455555444433
No 448
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=65.38 E-value=4.4 Score=42.94 Aligned_cols=70 Identities=26% Similarity=0.234 Sum_probs=44.1
Q ss_pred EEEEecCcccHhH--HHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCc-cEEEEeCCccccCCCCCccEEEECC
Q 036185 898 VIVDLFAGIGYFV--LPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSD-HCIVLEGDNRFTAPKGVANRVCLGL 971 (1057)
Q Consensus 898 ~VlDlf~G~G~fs--l~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~-~v~~~~~D~~~~~~~~~~D~Vil~~ 971 (1057)
+|+.+|+|+|..- +..| .-.|.-|-|+|+|+.|=+.-..|-.-|=++. +|+-+...-++ +..+|.+.|.|
T Consensus 5 rVlelysg~ggmhyal~~a-~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd---~l~~~m~lMSP 77 (338)
T KOG0919|consen 5 RVLELYSGHGGMHYALEDA-QIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFD---KLQANMLLMSP 77 (338)
T ss_pred ehhhhhhccchhhhhHhhh-cCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhh---hcccceEeeCC
Confidence 7999999999864 3333 2345669999999999998888733332221 23322222222 23478888887
No 449
>smart00284 OLF Olfactomedin-like domains.
Probab=65.10 E-value=2.2e+02 Score=31.30 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=96.9
Q ss_pred cEEEEEcccCCCCCCcccccEEEEeC----CCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEEC
Q 036185 302 SQILVFGGFGGMGRHARRNDLFLLDP----LQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNM 377 (1057)
Q Consensus 302 ~~lyvfGG~~~~g~~~~~~d~~~yd~----~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~ 377 (1057)
+++|++.|.+. ..+.++.|.- ....+.+.- .+|.+-.+-..++++|.+|.--. ..+.+-+||+
T Consensus 35 ~~~wv~~~~~~-----~~~~v~ey~~~~~f~~~~~~~~~--~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 35 SLYWYMPLNTR-----VLRSVREYSSMSDFQMGKNPTDH--PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred ceEEEEccccC-----CCcEEEEecCHHHHhccCCceEE--ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 46888877542 2344555532 233332221 46777788888999999997532 2467999999
Q ss_pred CCCcEEEeeccCCCCCc----cc-----c---eEEEEECCEEEEEcccCCCcccceEEEEECCCC----cEEEeecCCCC
Q 036185 378 AKSKWTLLECSGSVFQP----RH-----R---HAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTL----QWKELLINGEG 441 (1057)
Q Consensus 378 ~t~~W~~~~~~g~~p~~----R~-----~---hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~----~W~~~~~~g~~ 441 (1057)
.+.+-.... .+|.+ ++ + .-.++..+-|+++=......-.-.+-.+|+.+. +|..- .
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~-----~ 173 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITT-----Y 173 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcC-----C
Confidence 998754332 12221 11 1 112222344555532222111112345666654 45441 2
Q ss_pred CCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEEeeccCCCCCCceeeEEEEE---CCEEEEEe
Q 036185 442 PCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKKEDIAARSPHARFSHTMFLY---KNYLGLFG 511 (1057)
Q Consensus 442 P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~v~~~~~~P~~R~~hs~~~~---~~~l~i~G 511 (1057)
|.+..+ -+.++-+.||+.-... .....=.+.||+.+.+=..+ .-+++.+...+++.-+ +.+||++-
T Consensus 174 ~k~sa~-naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~~--~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 174 NKRSAS-NAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKEGHL--DIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred Cccccc-ccEEEeeEEEEEccCC-CCCcEEEEEEECCCCcccee--eeeeccccccceeceeCCCCCeEEEEe
Confidence 322222 3445668889885321 11122368899988653332 1234444445666655 56788873
No 450
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=64.94 E-value=41 Score=37.94 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=61.4
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC-Cccc---cCCCCCccEE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG-DNRF---TAPKGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~-D~~~---~~~~~~~D~V 967 (1057)
+..+++||...+| +|.+++.+|+..|+. |++++.+++..+.+++ .+++ .+..... +..+ ......+|+|
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~~~s~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKE----LGAD-EVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC-EEEcCCCcCHHHHHHHhcCCCceEE
Confidence 5678888887665 688888888666664 9999999998887754 3443 2211111 1111 1224458877
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
+-.. . ....+..+++.|+ ++|.+...+.
T Consensus 237 id~~-g-~~~~~~~~~~~l~-~~G~~v~~g~ 264 (338)
T cd08254 237 FDFV-G-TQPTFEDAQKAVK-PGGRIVVVGL 264 (338)
T ss_pred EECC-C-CHHHHHHHHHHhh-cCCEEEEECC
Confidence 6432 2 2456778888998 5777776654
No 451
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=64.85 E-value=1.3e+02 Score=34.12 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=81.0
Q ss_pred cEEEEEcccC-CCCCCccc-ccEEEEeCCCC-----cEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEE
Q 036185 302 SQILVFGGFG-GMGRHARR-NDLFLLDPLQG-----TIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWV 374 (1057)
Q Consensus 302 ~~lyvfGG~~-~~g~~~~~-~d~~~yd~~t~-----~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 374 (1057)
..++++|..- ........ ..++.|+.... +++.+... +.+-.-++++.+++++.+.-| +.+++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~--~~~g~V~ai~~~~~~lv~~~g--------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST--EVKGPVTAICSFNGRLVVAVG--------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE--EESS-EEEEEEETTEEEEEET--------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE--eecCcceEhhhhCCEEEEeec--------CEEEE
Confidence 3566666542 22222233 78999998884 56665533 223335677777999666555 36888
Q ss_pred EECCCCc-EEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 036185 375 FNMAKSK-WTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAY 453 (1057)
Q Consensus 375 yd~~t~~-W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~ 453 (1057)
|++.... |.... ....+-.-.+..+.++.|++ |-... .-.++.|+....+-..+... +.++...++..+
T Consensus 112 ~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD~~~---sv~~~~~~~~~~~l~~va~d---~~~~~v~~~~~l 181 (321)
T PF03178_consen 112 YDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GDAMK---SVSLLRYDEENNKLILVARD---YQPRWVTAAEFL 181 (321)
T ss_dssp EEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EESSS---SEEEEEEETTTE-EEEEEEE---SS-BEEEEEEEE
T ss_pred EEccCcccchhhh---eecceEEEEEEeccccEEEE-EEccc---CEEEEEEEccCCEEEEEEec---CCCccEEEEEEe
Confidence 8888777 87776 33334456666677886665 32211 11245668766667777653 446766677666
Q ss_pred -CCEEEEEec
Q 036185 454 -GSRLYMFGG 462 (1057)
Q Consensus 454 -~~~lyv~GG 462 (1057)
++. .++++
T Consensus 182 ~d~~-~~i~~ 190 (321)
T PF03178_consen 182 VDED-TIIVG 190 (321)
T ss_dssp -SSS-EEEEE
T ss_pred cCCc-EEEEE
Confidence 555 44444
No 452
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=64.68 E-value=1.9e+02 Score=31.33 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=72.5
Q ss_pred cEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCC
Q 036185 302 SQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKS 380 (1057)
Q Consensus 302 ~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~ 380 (1057)
+.|+..||.. -+|+.|+++++.++.-- -..-+-|+++.- .+-=++.||.++ .+-++|..|.
T Consensus 127 nSi~~AgGD~---------~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~ 188 (325)
T KOG0649|consen 127 NSILFAGGDG---------VIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQ 188 (325)
T ss_pred CcEEEecCCe---------EEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCc------cEEEEecccc
Confidence 4588888733 47899999999876531 122244555542 223345677665 5778888887
Q ss_pred cEEEee-ccCCCCCcc--cce--EEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEECC
Q 036185 381 KWTLLE-CSGSVFQPR--HRH--AAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAYGS 455 (1057)
Q Consensus 381 ~W~~~~-~~g~~p~~R--~~h--sa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~~~ 455 (1057)
+-.++- +.-....-| .+- .+...+..-.++||-.. +-.+++.+.+-+.+- |.|-.-|-+..+++
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrsse~t~vf-----pipa~v~~v~F~~d 257 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSSESTCVF-----PIPARVHLVDFVDD 257 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCCCceEEE-----ecccceeEeeeecc
Confidence 654442 111111122 222 33344555666776433 556666666655553 33444455555666
Q ss_pred EEEEEe
Q 036185 456 RLYMFG 461 (1057)
Q Consensus 456 ~lyv~G 461 (1057)
.+.+.|
T Consensus 258 ~vl~~G 263 (325)
T KOG0649|consen 258 CVLIGG 263 (325)
T ss_pred eEEEec
Confidence 666555
No 453
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=64.58 E-value=1.1e+02 Score=37.54 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=67.9
Q ss_pred EEEEECCEEEEEcccCCCCCCCCcEEEEECCCCc--EEEeeccC-CC-C---CcccceEEEEECCEEEEEcccCCCcccc
Q 036185 348 TSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSK--WTLLECSG-SV-F---QPRHRHAAAVIGSKIYVFGGLNNDTIFS 420 (1057)
Q Consensus 348 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~-p---~~R~~hsa~~~~~~iyv~GG~~~~~~~~ 420 (1057)
+-++.++.||+.... +.++.+|..|.+ |+.-.... .. + ......+.++.++++|+.. .+ .
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d-----g 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD-----A 130 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC-----C
Confidence 345678999986432 368999988764 87543110 00 0 0111223455678887632 22 3
Q ss_pred eEEEEECCCCc--EEEeecCCCCCC-CcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCe--EEE
Q 036185 421 SLHVLDTDTLQ--WKELLINGEGPC-ARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACL--WKK 484 (1057)
Q Consensus 421 ~v~~yD~~t~~--W~~~~~~g~~P~-~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~ 484 (1057)
.++.+|..|++ |+.-.. .... .....+-++.++.+|+-...........++.||.+|.+ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 58999998875 765422 1111 11223345668887765322222234579999998865 775
No 454
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=64.45 E-value=32 Score=39.36 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=65.4
Q ss_pred cCCCCEEEEec--CcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc----cCCCCCccE
Q 036185 893 DCKDEVIVDLF--AGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF----TAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf--~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~----~~~~~~~D~ 966 (1057)
++.|++||=.. .|+|.|++.+|+..|+ .++++-.+++-.+.+++ .|-+.-+.....|..+ ...+..+|+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 56789888877 5899999999988887 56777777766664443 3433222223333222 222335888
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
|+ | +-....+...+..|+ ++|.+..+....
T Consensus 215 v~-D--~vG~~~~~~~l~~l~-~~G~lv~ig~~~ 244 (326)
T COG0604 215 VL-D--TVGGDTFAASLAALA-PGGRLVSIGALS 244 (326)
T ss_pred EE-E--CCCHHHHHHHHHHhc-cCCEEEEEecCC
Confidence 76 3 335677888999998 578888888754
No 455
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=64.22 E-value=33 Score=36.50 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=61.1
Q ss_pred CEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC-C---CCCccEE----E
Q 036185 897 EVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA-P---KGVANRV----C 968 (1057)
Q Consensus 897 ~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~-~---~~~~D~V----i 968 (1057)
-++||++|=.....+.. .+.-.|++||+|+.- - .+.+.|-.+.. | .++||+| |
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~----------~------~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQH----------P------GILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCCC----------C------CceeeccccCCCCCCcccceeEEEEEEE
Confidence 47999988765544332 344459999999821 1 23445544432 2 4679998 4
Q ss_pred ECCCCCChhH---HHHHHHHhhCCCcE-----EEEE------cccccchhHHHHHHHHHHHHHHHHhcCCc
Q 036185 969 LGLIPTSENS---WVTAVQALRSEGGT-----LHVH------GNVKDSEEKLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 969 l~~~P~~~~~---~~~a~~~l~~~gg~-----l~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
+|.+|++..- +..+...|++ +|. |.+- .+++..+ .+++.++.+..|+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~-~g~~~~~~LFlVlP~~Cv~NSRy~~--------~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKP-PGLSLFPSLFLVLPLPCVTNSRYMT--------EERLREIMESLGFT 175 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCC-CCccCcceEEEEeCchHhhcccccC--------HHHHHHHHHhCCcE
Confidence 5777877543 7778888884 555 4432 2222222 24666777888975
No 456
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=64.22 E-value=2.2e+02 Score=30.98 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=97.3
Q ss_pred cEEEEeCCCCcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccce
Q 036185 321 DLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRH 398 (1057)
Q Consensus 321 d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~h 398 (1057)
.+-.||+.++.=..+. ..-.++..-+++.. +++-...||.++ .+-++|+..-.-.+.- ..+.| --
T Consensus 62 hvRlyD~~S~np~Pv~--t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~qR~~---~~~sp--Vn 128 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVA--TFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSCQRNY---QHNSP--VN 128 (311)
T ss_pred eeEEEEccCCCCCcee--EEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCcccchhc---cCCCC--cc
Confidence 4677888776532222 11122233344433 677777888766 4666776652222111 01111 11
Q ss_pred EEEEECCEE-EEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcce-eEEEEECCEEEEEecCCCCcccCcEEEEE
Q 036185 399 AAAVIGSKI-YVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHS-HSMLAYGSRLYMFGGYNGEKALGDLYTFD 476 (1057)
Q Consensus 399 sa~~~~~~i-yv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~-~s~~~~~~~lyv~GG~~~~~~~~~l~~yd 476 (1057)
+.+...++- .+.|-.++ .++++|+.++..+.... |..-.. .++++..+--++.++.+ ...+|+++
T Consensus 129 ~vvlhpnQteLis~dqsg-----~irvWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~ 195 (311)
T KOG0315|consen 129 TVVLHPNQTELISGDQSG-----NIRVWDLGENSCTHELI----PEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWR 195 (311)
T ss_pred eEEecCCcceEEeecCCC-----cEEEEEccCCccccccC----CCCCcceeeEEEcCCCcEEEEecC----CccEEEEE
Confidence 233333432 33333333 48999999997766543 222211 22233322233333322 22467777
Q ss_pred CCCCeEEE-eeccCCCCCCceeeEE--EEE-CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEE
Q 036185 477 VHACLWKK-EDIAARSPHARFSHTM--FLY-KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANV 552 (1057)
Q Consensus 477 ~~t~~W~~-v~~~~~~P~~R~~hs~--~~~-~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~ 552 (1057)
+.+.+-.. +.+.... ..+.+|.. ..- +++.++.-+ .-..+.+++.++. .++...-.+...-...++..
T Consensus 196 l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~lat~s-----sdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKF-QAHNGHILRCLLSPDVKYLATCS-----SDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ccCCCccccceEhhhe-ecccceEEEEEECCCCcEEEeec-----CCceEEEEecCCc--eeeEEEeecCCceEEeeeec
Confidence 66643321 1111111 12333332 222 555555544 2346788888877 22221122222334456666
Q ss_pred eCCEEEEEeCCC
Q 036185 553 VDDDLIMIGGGA 564 (1057)
Q Consensus 553 ~~~~iyi~GGg~ 564 (1057)
.++..++.|+.+
T Consensus 268 ~dg~YlvTassd 279 (311)
T KOG0315|consen 268 ADGEYLVTASSD 279 (311)
T ss_pred cCccEEEecCCC
Confidence 667766666653
No 457
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=62.73 E-value=32 Score=39.74 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=25.0
Q ss_pred cccHhHHHHHHh--CCCcEEEEEecCHHHHHHHH
Q 036185 905 GIGYFVLPFLVR--AKARLVYACEWNPCAVEALK 936 (1057)
Q Consensus 905 G~G~fsl~~a~~--~~a~~V~avD~n~~ai~~~~ 936 (1057)
|-||.+||+|.. .....|+++|+|+..++.+.
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 889999998843 12235999999999998664
No 458
>PLN02827 Alcohol dehydrogenase-like
Probab=62.67 E-value=35 Score=39.81 Aligned_cols=99 Identities=19% Similarity=0.077 Sum_probs=60.0
Q ss_pred cCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---CccccCC---CCCcc
Q 036185 893 DCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---DNRFTAP---KGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D~~~~~~---~~~~D 965 (1057)
+.+|++||-..+ ++|.+++.+|+..|++.|+++|.+++-.+.+++ .|.+ .+.-... +..+.+. ...+|
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT-DFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc-EEEcccccchHHHHHHHHHhCCCCC
Confidence 567888887754 345555566666788789999999988777744 4543 1211111 1111111 12578
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCC-cEEEEEccc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEG-GTLHVHGNV 999 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~g-g~l~~~~~~ 999 (1057)
.|+=.. . ....+..+++.++ +| |.+.++...
T Consensus 266 ~vid~~-G-~~~~~~~~l~~l~-~g~G~iv~~G~~ 297 (378)
T PLN02827 266 YSFECV-G-DTGIATTALQSCS-DGWGLTVTLGVP 297 (378)
T ss_pred EEEECC-C-ChHHHHHHHHhhc-cCCCEEEEECCc
Confidence 776322 2 2345788999998 56 988887764
No 459
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=62.06 E-value=22 Score=40.50 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=59.0
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEE-EEeCCc----cccCCCCCccE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCI-VLEGDN----RFTAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~-~~~~D~----~~~~~~~~~D~ 966 (1057)
+.+|++||...+| +|.+++.+|+..|+..|++++.++...+.+++. +.+ .+. ....+. ........+|.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT-DIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCcchHHHHHHHHcCCCCCcE
Confidence 4578888887665 577778888766765799999988887776652 332 111 111111 11222345787
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
|+-.. . ....+..+++.|+ ++|.+..++
T Consensus 240 vld~~-g-~~~~~~~~~~~l~-~~G~~v~~g 267 (347)
T cd05278 240 VIEAV-G-FEETFEQAVKVVR-PGGTIANVG 267 (347)
T ss_pred EEEcc-C-CHHHHHHHHHHhh-cCCEEEEEc
Confidence 76332 2 2356888888898 567665543
No 460
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.52 E-value=38 Score=38.95 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred cCCCCEEEEecC--cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-C-CccccC---CCCCcc
Q 036185 893 DCKDEVIVDLFA--GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-G-DNRFTA---PKGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~--G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~-D~~~~~---~~~~~D 965 (1057)
+.+|++||=..+ |+|.+++.+|+..|+ +|++++.+++-.+.+++. .|.+ .+.-.. . |..+.+ ....+|
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCCCcE
Confidence 567899988776 599999999977777 599999999887777633 3443 222111 1 222111 122477
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
+|+ +... ...+..+++.++ ++|.+.++...
T Consensus 231 ~v~-d~vG--~~~~~~~~~~l~-~~G~iv~~G~~ 260 (348)
T PLN03154 231 IYF-DNVG--GDMLDAALLNMK-IHGRIAVCGMV 260 (348)
T ss_pred EEE-ECCC--HHHHHHHHHHhc-cCCEEEEECcc
Confidence 776 4423 457888888888 68888877653
No 461
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=61.40 E-value=35 Score=38.82 Aligned_cols=97 Identities=10% Similarity=-0.062 Sum_probs=60.6
Q ss_pred cCCC--CEEEEecC--cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-CCccccC---CCCCc
Q 036185 893 DCKD--EVIVDLFA--GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-GDNRFTA---PKGVA 964 (1057)
Q Consensus 893 ~~~g--~~VlDlf~--G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~D~~~~~---~~~~~ 964 (1057)
+.+| ++||=..+ |+|.+++.+|+..|+.+|++++.+++-.+.+++. .|.+ .+.... .|..+.+ ....+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~-~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD-AAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc-EEEECCCCCHHHHHHHHCCCCc
Confidence 4444 78877764 7899999898777876799999999887777663 2443 221111 1211111 12347
Q ss_pred cEEEECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 965 NRVCLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 965 D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
|.|+ |.... ..+..+++.|+ ++|.+..+.
T Consensus 226 d~vi-d~~g~--~~~~~~~~~l~-~~G~iv~~G 254 (345)
T cd08293 226 DVYF-DNVGG--EISDTVISQMN-ENSHIILCG 254 (345)
T ss_pred eEEE-ECCCc--HHHHHHHHHhc-cCCEEEEEe
Confidence 8776 44233 34678888888 577776654
No 462
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=61.35 E-value=3e+02 Score=31.54 Aligned_cols=232 Identities=16% Similarity=0.167 Sum_probs=107.9
Q ss_pred EEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEE--ECCEEEEEcccCCCCCCCCcEEEEEC--CCCc
Q 036185 306 VFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSL--IGDHMFIIGGRADPLNILSDVWVFNM--AKSK 381 (1057)
Q Consensus 306 vfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~--~~~~Iyv~GG~~~~~~~~~~v~~yd~--~t~~ 381 (1057)
++|+++.. ....=.++.||..++++..+.... ..-.-.-++. -++.+|+..... .....+..|.. .+.+
T Consensus 3 ~vgsy~~~--~~~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 3 YVGSYTNG--KGGGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEECCSS--SSTEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTE
T ss_pred EEEcCCCC--CCCcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcce
Confidence 45666541 111224555677899998776321 1111111222 356788885542 12345555554 4467
Q ss_pred EEEeeccCCCCCcccceEEEEE--C-CEEEEEcccCCCcccceEEEEECCCC-cEEEeec------CCC---CCCCccee
Q 036185 382 WTLLECSGSVFQPRHRHAAAVI--G-SKIYVFGGLNNDTIFSSLHVLDTDTL-QWKELLI------NGE---GPCARHSH 448 (1057)
Q Consensus 382 W~~~~~~g~~p~~R~~hsa~~~--~-~~iyv~GG~~~~~~~~~v~~yD~~t~-~W~~~~~------~g~---~P~~r~~~ 448 (1057)
.+.+. ..+......+...+ + ..+|+.- +. .+.+..|++..+ .-..... .++ ....-..|
T Consensus 76 L~~~~---~~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 76 LTLLN---SVPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEEEE---EEEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred eEEee---eeccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 87775 22322222222333 3 3455542 22 234777777653 2222210 011 12234456
Q ss_pred EEEEEC--CEEEEEecCCCCcccCcEEEEECCCCe--EEEeeccCCCCCCce-eeEEEEE-CCEEEEEeccCCCCCCCeE
Q 036185 449 SMLAYG--SRLYMFGGYNGEKALGDLYTFDVHACL--WKKEDIAARSPHARF-SHTMFLY-KNYLGLFGGCPVRQNYQEL 522 (1057)
Q Consensus 449 s~~~~~--~~lyv~GG~~~~~~~~~l~~yd~~t~~--W~~v~~~~~~P~~R~-~hs~~~~-~~~l~i~GG~~~~~~~~~i 522 (1057)
.+.... +.+|+.. ...+.|+.|+..... ....... ..|..-. .|.+..- +..+|+..- ..+.+
T Consensus 148 ~v~~~pdg~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e-----~s~~v 216 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNE-----LSNTV 216 (345)
T ss_dssp EEEE-TTSSEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEET-----TTTEE
T ss_pred eEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecC-----CCCcE
Confidence 665553 3566653 124678999887765 5543221 2222111 2333222 457888865 34566
Q ss_pred EEEECC--CCeEEEeeccCCCCCcc---cceE-EEEe--CCEEEEEeCC
Q 036185 523 SLLDLQ--LHIWKHLKLNYVCKELF---VRST-ANVV--DDDLIMIGGG 563 (1057)
Q Consensus 523 ~~yd~~--~~~W~~v~~~~~~~~~~---~~~~-a~~~--~~~iyi~GGg 563 (1057)
.+|+.. +..|+.+......+... ...+ .... +..+|+.-.+
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 666665 77777765333221111 1222 2233 3467776655
No 463
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=61.07 E-value=29 Score=45.60 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=74.0
Q ss_pred CCCEEEEecCc-ccHhHHHHHHhCC-Cc------------EEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc---
Q 036185 895 KDEVIVDLFAG-IGYFVLPFLVRAK-AR------------LVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF--- 957 (1057)
Q Consensus 895 ~g~~VlDlf~G-~G~fsl~~a~~~~-a~------------~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~--- 957 (1057)
...+|+=++|| +|...+.++.+.. +. .|+.+|.+++..+.+.++. . +++.+..|+.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----~-~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----E-NAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----C-CCceEEeecCCHHH
Confidence 45689999998 5776666653322 22 4888999998877666643 1 34455555433
Q ss_pred cCC-CCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHhcCCceeeeeeEEEEe
Q 036185 958 TAP-KGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERV 1036 (1057)
Q Consensus 958 ~~~-~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~V 1036 (1057)
+.. -...|+||.-.++..+ ...|..+++ .|- |+.+-+...+ -...+.++|++.|..+-+.+
T Consensus 642 L~~~v~~~DaVIsalP~~~H--~~VAkaAie-aGk--Hvv~eky~~~-------e~~~L~e~Ak~AGV~~m~e~------ 703 (1042)
T PLN02819 642 LLKYVSQVDVVISLLPASCH--AVVAKACIE-LKK--HLVTASYVSE-------EMSALDSKAKEAGITILCEM------ 703 (1042)
T ss_pred HHHhhcCCCEEEECCCchhh--HHHHHHHHH-cCC--CEEECcCCHH-------HHHHHHHHHHHcCCEEEECC------
Confidence 222 0348999888844443 334444455 232 5554442221 14567788888886543222
Q ss_pred EeecCCceE
Q 036185 1037 KWYAPHIRH 1045 (1057)
Q Consensus 1037 k~~aP~~~h 1045 (1057)
-++|+..|
T Consensus 704 -GlDPGid~ 711 (1042)
T PLN02819 704 -GLDPGIDH 711 (1042)
T ss_pred -ccCHHHHH
Confidence 18999888
No 464
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.47 E-value=55 Score=37.54 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=59.9
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---CccccC----CCCCc
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---DNRFTA----PKGVA 964 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D~~~~~----~~~~~ 964 (1057)
+.+|++|+=..|| +|.+++.+|+..|+ +|+++|.+++-++.+++ .|.+.-+..... |..+.+ ....+
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCC
Confidence 4678888887764 36666667766777 59999999998887754 244311111111 111111 11234
Q ss_pred c---EEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 965 N---RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 965 D---~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
| -++++-.. ....+..++++++ +||.+.++....
T Consensus 239 d~~~d~v~d~~g-~~~~~~~~~~~l~-~~G~iv~~G~~~ 275 (349)
T TIGR03201 239 RSTGWKIFECSG-SKPGQESALSLLS-HGGTLVVVGYTM 275 (349)
T ss_pred CCCcCEEEECCC-ChHHHHHHHHHHh-cCCeEEEECcCC
Confidence 4 13444422 3456778889998 689888877643
No 465
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=60.00 E-value=62 Score=37.47 Aligned_cols=101 Identities=19% Similarity=0.106 Sum_probs=59.9
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe--CCccccC---CCCCccE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE--GDNRFTA---PKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~--~D~~~~~---~~~~~D~ 966 (1057)
+..|++||=..|| +|.+++.+|+..|+.+|+++|.+++-.+.+++ .|.+.-+.... .+..+.+ ....+|+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCCCCE
Confidence 5678888877553 45566667766788789999999998888865 34431111110 1111111 1124787
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|+ +-.. ....+..+++.+++.+|.+......
T Consensus 259 vi-d~~G-~~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 259 SF-ECIG-NVNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred EE-ECCC-CHHHHHHHHHHhhcCCCeEEEEecc
Confidence 75 3323 2456788888887434877766653
No 466
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.50 E-value=58 Score=35.47 Aligned_cols=125 Identities=17% Similarity=0.081 Sum_probs=83.2
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC-CCCccEEEECC
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP-KGVANRVCLGL 971 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~-~~~~D~Vil~~ 971 (1057)
+.+|...+||+|-.|+.+-.+. +..-.|+|||--+-|-. +.- .+.|+-...|.+.+-| ..+.|-.|+|.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLV--kr~m~V~aVDng~ma~s-----L~d---tg~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLV--KRNMRVYAVDNGPMAQS-----LMD---TGQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hcCCceeeecccCCCccchhhh--hcceEEEEeccchhhhh-----hhc---ccceeeeeccCcccccCCCCCceEEeeh
Confidence 4578999999999999998876 44557999998775432 222 2468889999999988 55789999999
Q ss_pred CCCChhHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHH---HHHHHHHHhcCCceeee
Q 036185 972 IPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVS---KSIYEIARSEGHRWEVT 1029 (1057)
Q Consensus 972 ~P~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~g~~~~~~ 1029 (1057)
+-.+...-.....-|. +||.+=--|--.-.+....+++. +++++-+.+.|.++.+.
T Consensus 279 VEkP~rv~~li~~Wl~--nGwCre~IfNLKLPMKkRy~Ev~~~L~~~~~~l~~~g~~~~i~ 337 (358)
T COG2933 279 VEKPARVAALIAKWLV--NGWCRETIFNLKLPMKKRYEEVRLCLARLEEQLDEHGINAQIQ 337 (358)
T ss_pred hcCcHHHHHHHHHHHH--cchHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhcCCceeec
Confidence 7777666555555665 55432221211122333334433 46667777778766543
No 467
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.37 E-value=30 Score=37.34 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=61.3
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccc---cCCCCCccEEE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRF---TAPKGVANRVC 968 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~---~~~~~~~D~Vi 968 (1057)
+.++++||...+| +|...+.+++..| .+|++++.+++..+.+++. +...-+.....+... ......+|.|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 3678999999888 5777777775555 5699999999888777542 222101101111110 11234589988
Q ss_pred ECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 969 LGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 969 l~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
-.. +. ...+..+++.++ ++|.+.......
T Consensus 207 ~~~-~~-~~~~~~~~~~l~-~~G~~v~~~~~~ 235 (271)
T cd05188 207 DAV-GG-PETLAQALRLLR-PGGRIVVVGGTS 235 (271)
T ss_pred ECC-CC-HHHHHHHHHhcc-cCCEEEEEccCC
Confidence 654 32 255777788887 577777666544
No 468
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=58.83 E-value=15 Score=40.36 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=71.6
Q ss_pred CCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCC---------------------------Cc
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSV---------------------------SD 946 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~---------------------------~~ 946 (1057)
.+|+++||++||.-.+.+..| ..-++.+++.|..+...+.+++=++.-+- ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa-~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSA-CEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTG-GGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhH-HHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 368899999999876654433 35678899999999999877664332211 01
Q ss_pred cE-EEEeCCccccCC--C-----CCccEEEECCCC--------CChhHHHHHHHHhhCCCcEEEEEcccccch--h----
Q 036185 947 HC-IVLEGDNRFTAP--K-----GVANRVCLGLIP--------TSENSWVTAVQALRSEGGTLHVHGNVKDSE--E---- 1004 (1057)
Q Consensus 947 ~v-~~~~~D~~~~~~--~-----~~~D~Vil~~~P--------~~~~~~~~a~~~l~~~gg~l~~~~~~~~~~--~---- 1004 (1057)
.| .++..|+.+..+ . .+||.|++-..- .....+....++|+ +||.|++-..-.... .
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~l~~t~Y~vG~~~ 212 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGVLGSTYYMVGGHK 212 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEESS-SEEEETTEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEEcCceeEEECCEe
Confidence 23 378888876543 1 248998875421 11222444444555 799888766643210 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCc
Q 036185 1005 KLWAEHVSKSIYEIARSEGHR 1025 (1057)
Q Consensus 1005 ~~~~~~~~~~i~~~~~~~g~~ 1025 (1057)
.....--.+.++++.++.|+.
T Consensus 213 F~~l~l~ee~v~~al~~aG~~ 233 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFD 233 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEE
T ss_pred cccccCCHHHHHHHHHHcCCE
Confidence 000001134567777888875
No 469
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.39 E-value=3e+02 Score=30.56 Aligned_cols=186 Identities=12% Similarity=0.028 Sum_probs=96.0
Q ss_pred cEEEEeCCCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceE
Q 036185 321 DLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHA 399 (1057)
Q Consensus 321 d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hs 399 (1057)
.+=.+||.+++-.+++ ++..-.-|..++- ++..++.-+. +.+-++|+++..-++.+....++.. +.-
T Consensus 84 aiGhLdP~tGev~~yp---Lg~Ga~Phgiv~gpdg~~Witd~~-------~aI~R~dpkt~evt~f~lp~~~a~~--nle 151 (353)
T COG4257 84 AIGHLDPATGEVETYP---LGSGASPHGIVVGPDGSAWITDTG-------LAIGRLDPKTLEVTRFPLPLEHADA--NLE 151 (353)
T ss_pred cceecCCCCCceEEEe---cCCCCCCceEEECCCCCeeEecCc-------ceeEEecCcccceEEeecccccCCC--ccc
Confidence 4556899999988886 3444444554443 3345554221 2688999999888877543222222 222
Q ss_pred EEEE--CCEEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEE-EECCEEEEEecCCCCcccCcEEEEE
Q 036185 400 AAVI--GSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSML-AYGSRLYMFGGYNGEKALGDLYTFD 476 (1057)
Q Consensus 400 a~~~--~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~l~~yd 476 (1057)
..++ .+.++..|-.... -++||.++.-+.... |..-.-+.+| .-++.+|+.-= .-|.|-+.|
T Consensus 152 t~vfD~~G~lWFt~q~G~y------GrLdPa~~~i~vfpa----PqG~gpyGi~atpdGsvwyasl-----agnaiarid 216 (353)
T COG4257 152 TAVFDPWGNLWFTGQIGAY------GRLDPARNVISVFPA----PQGGGPYGICATPDGSVWYASL-----AGNAIARID 216 (353)
T ss_pred ceeeCCCccEEEeeccccc------eecCcccCceeeecc----CCCCCCcceEECCCCcEEEEec-----cccceEEcc
Confidence 3333 3457766531111 155666665544432 2222222333 23555555421 123466777
Q ss_pred CCCCeEEEeeccCCCCCCceeeEEEEE---CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCC
Q 036185 477 VHACLWKKEDIAARSPHARFSHTMFLY---KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCK 542 (1057)
Q Consensus 477 ~~t~~W~~v~~~~~~P~~R~~hs~~~~---~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~ 542 (1057)
+.+..=+.+. .|.+....+=.+. .+.+.+. ......++.||+.+..|..-+.+...+
T Consensus 217 p~~~~aev~p----~P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 217 PFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred cccCCcceec----CCCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccceeeeCCCCCC
Confidence 7776544441 2222111110111 2444443 122447999999999999987665543
No 470
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=57.31 E-value=3.3e+02 Score=30.78 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=84.4
Q ss_pred CCCcEEEeccCCCCCCccccEEEEE-CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEE-CC
Q 036185 328 LQGTIKAIHTEGSPSPRLGHTSSLI-GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVI-GS 405 (1057)
Q Consensus 328 ~t~~W~~l~~~~~P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~-~~ 405 (1057)
.-.+|++++.+ .+.|-..+....+ ++.++++|.. ..+|+=.-.-.+|+.+... ....-...... ++
T Consensus 89 gG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 89 GGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDG 156 (302)
T ss_dssp TTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS
T ss_pred CCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCC
Confidence 45689998643 2233333444444 5577777543 2466555566789988621 11222222333 45
Q ss_pred EEEEEcccCCCcccceEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCEEEEEecCCCCcccCcEEEEE--CCCCeE
Q 036185 406 KIYVFGGLNNDTIFSSLHVLDTDTLQWKELLINGEGPCARHSHSMLAY-GSRLYMFGGYNGEKALGDLYTFD--VHACLW 482 (1057)
Q Consensus 406 ~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~g~~P~~r~~~s~~~~-~~~lyv~GG~~~~~~~~~l~~yd--~~t~~W 482 (1057)
++++++ ..+. -+...|+-...|+.... +..|.-.+|... ++.|++.. ..+. +..=+ -...+|
T Consensus 157 ~~vavs-~~G~----~~~s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~Gg~-----~~~s~~~~~~~~w 221 (302)
T PF14870_consen 157 RYVAVS-SRGN----FYSSWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLA-RGGQ-----IQFSDDPDDGETW 221 (302)
T ss_dssp -EEEEE-TTSS----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE-----EEEEE-TTEEEEE
T ss_pred cEEEEE-Cccc----EEEEecCCCccceEEcc----CccceehhceecCCCCEEEEe-CCcE-----EEEccCCCCcccc
Confidence 555554 3222 12356778888998875 344544555444 55777764 3221 22222 234567
Q ss_pred EEeeccCCCCC--CceeeEEEEE--CCEEEEEeccCCCCCCCeEEEEECCCCeEEEeeccCCCCCcccceEEEEeCCEEE
Q 036185 483 KKEDIAARSPH--ARFSHTMFLY--KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLKLNYVCKELFVRSTANVVDDDLI 558 (1057)
Q Consensus 483 ~~v~~~~~~P~--~R~~hs~~~~--~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~~~~~~~~~~~~~~a~~~~~~iy 558 (1057)
.+. ..|. ..++.-...+ ++.+++.||.. .+++=.-.-++|++.......+.-. ..-...-+++-+
T Consensus 222 ~~~----~~~~~~~~~~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~~~~~n~-~~i~f~~~~~gf 290 (302)
T PF14870_consen 222 SEP----IIPIKTNGYGILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGENVPSNL-YRIVFVNPDKGF 290 (302)
T ss_dssp -------B-TTSS--S-EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGTTSSS----EEEEEETTEEE
T ss_pred ccc----cCCcccCceeeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECccccCCCCce-EEEEEcCCCceE
Confidence 763 2333 3333333333 57899999832 3443334557899986422222112 223334567888
Q ss_pred EEeCC
Q 036185 559 MIGGG 563 (1057)
Q Consensus 559 i~GGg 563 (1057)
++|-.
T Consensus 291 ~lG~~ 295 (302)
T PF14870_consen 291 VLGQD 295 (302)
T ss_dssp EE-ST
T ss_pred EECCC
Confidence 88864
No 471
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.76 E-value=47 Score=35.99 Aligned_cols=140 Identities=19% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCCEEEEecCcccHhHHHHHHhCC--CcEEEEEecCHHHH------HHHHHHHHHcCCCccEEEEeCCccccCC-----C
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAK--ARLVYACEWNPCAV------EALKHNLQANSVSDHCIVLEGDNRFTAP-----K 961 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~--a~~V~avD~n~~ai------~~~~~N~~~N~~~~~v~~~~~D~~~~~~-----~ 961 (1057)
+.++|+-++=|-=.|++.++...| |..++|..++..-. -.+++|++.-..-+--.+...|+...-. -
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~ 135 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRL 135 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccc
Confidence 345677666666566666665444 55677776655442 2345555333221222445556554322 3
Q ss_pred CCccEEEECCCCCCh--------------------hHHHHHHHHhhCCCcEEEEEcccccchhHHHHHHHHHHHHHHHHh
Q 036185 962 GVANRVCLGLIPTSE--------------------NSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARS 1021 (1057)
Q Consensus 962 ~~~D~Vil~~~P~~~--------------------~~~~~a~~~l~~~gg~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1021 (1057)
..||.||.|. |++- .++..|-..|+...|-||+.-..... ...| -|..+|++
T Consensus 136 ~~~d~IiFNF-PH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P-~~~W------~ik~Lak~ 207 (282)
T KOG4174|consen 136 QRYDNIIFNF-PHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYP-FNPW------NIKFLAKE 207 (282)
T ss_pred cccceEEEcC-CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCC-Cchh------hhhHhhhh
Confidence 5699999997 8762 23555666676567877775333221 1223 34555666
Q ss_pred cCCceeeeeeEEEEeEeecCCceE
Q 036185 1022 EGHRWEVTIEHIERVKWYAPHIRH 1045 (1057)
Q Consensus 1022 ~g~~~~~~~~~~~~Vk~~aP~~~h 1045 (1057)
.|... ++..+.-++.-||-.|
T Consensus 208 ~gl~L---~~~skF~~~~~Pgy~~ 228 (282)
T KOG4174|consen 208 FGLTL---LEDSKFEKSNYPGYSN 228 (282)
T ss_pred ccccc---hhcccchhhcCCCccc
Confidence 66652 3334555566665443
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=56.45 E-value=3.7e+02 Score=31.06 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=89.7
Q ss_pred cEEEEeCCCCc--EEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCC--cEEEeeccCCCCCccc
Q 036185 321 DLFLLDPLQGT--IKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKS--KWTLLECSGSVFQPRH 396 (1057)
Q Consensus 321 d~~~yd~~t~~--W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~R~ 396 (1057)
.+++||..+++ |..-... . ++..-..+..++.+|+.- ..+.++.+|..+. .|+.-...+ ...+.
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~--~~~~~ 189 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP--LSLSI 189 (370)
T ss_pred eEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc--ccccc
Confidence 79999996654 7654322 1 344444445556666543 2257888988865 487543211 22233
Q ss_pred ceEEEEECCEEEEEcccCCCcccceEEEEECCCC--cEEEeecC--CCCC---CCcceeEEEEECCEEEEEecCCCCccc
Q 036185 397 RHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTL--QWKELLIN--GEGP---CARHSHSMLAYGSRLYMFGGYNGEKAL 469 (1057)
Q Consensus 397 ~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~--~W~~~~~~--g~~P---~~r~~~s~~~~~~~lyv~GG~~~~~~~ 469 (1057)
..+...-.+.+|+-. .+ . ...++.+|+.++ .|+.-... +... .+......+..++.+|.... .
T Consensus 190 ~~~~~~~~~~vy~~~-~~--~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~------~ 259 (370)
T COG1520 190 YGSPAIASGTVYVGS-DG--Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY------G 259 (370)
T ss_pred ccCceeecceEEEec-CC--C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec------C
Confidence 223334455566542 21 1 226899999765 48753221 1110 12333334444444433322 2
Q ss_pred CcEEEEECCCC--eEEEeeccCCCCCCceeeEEEE-ECCEEEEEeccCCCCCCCeEEEEEC
Q 036185 470 GDLYTFDVHAC--LWKKEDIAARSPHARFSHTMFL-YKNYLGLFGGCPVRQNYQELSLLDL 527 (1057)
Q Consensus 470 ~~l~~yd~~t~--~W~~v~~~~~~P~~R~~hs~~~-~~~~l~i~GG~~~~~~~~~i~~yd~ 527 (1057)
..++++|..+. .|+.-.. ......+...+... -++.+|+............+++++.
T Consensus 260 g~~~~l~~~~G~~~W~~~~~-~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 260 GKLLCLDADTGELIWSFPAG-GSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred CeEEEEEcCCCceEEEEecc-cEeccCCeeEEeecCCCccEEEEEeccccccccceEEEec
Confidence 23788887755 4876421 11111111112222 2667777654332223455667665
No 473
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=56.21 E-value=74 Score=37.36 Aligned_cols=100 Identities=10% Similarity=0.002 Sum_probs=60.0
Q ss_pred cCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-CCccc----cCCCCCccE
Q 036185 893 DCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-GDNRF----TAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~D~~~----~~~~~~~D~ 966 (1057)
+..|++||=..+ ++|.+++.+|+..|++.|+++|.+++-.+.+++ -|.. .+.... .+..+ ......+|+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 567888776443 244444556666788878888999988888775 2442 111111 12111 122335787
Q ss_pred EEECCCCCC-------------hhHHHHHHHHhhCCCcEEEEEccc
Q 036185 967 VCLGLIPTS-------------ENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 967 Vil~~~P~~-------------~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|+--- ... ...+..++.+++ +||.+.+....
T Consensus 258 vid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGLY 301 (393)
T ss_pred EEECC-CCccccccccccccchHHHHHHHHHHhh-CCCEEEEeeec
Confidence 76332 332 246889999998 68888887764
No 474
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.87 E-value=2.3e+02 Score=34.34 Aligned_cols=153 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCcEEEEEcccCCCCCCcccccEEEEeCC-------------------------------CCcEEEeccC-----CCCCC
Q 036185 300 NDSQILVFGGFGGMGRHARRNDLFLLDPL-------------------------------QGTIKAIHTE-----GSPSP 343 (1057)
Q Consensus 300 ~~~~lyvfGG~~~~g~~~~~~d~~~yd~~-------------------------------t~~W~~l~~~-----~~P~~ 343 (1057)
++++++..|-+-. .+-+||+. +..|..+... .+-.|
T Consensus 62 DGqY~lAtG~YKP--------~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 62 DGQYLLATGTYKP--------QIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred CCcEEEEecccCC--------ceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Q ss_pred ccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcccceEEEEECCE--EEEEcccCCCccc
Q 036185 344 RLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPRHRHAAAVIGSK--IYVFGGLNNDTIF 419 (1057)
Q Consensus 344 R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~hsa~~~~~~--iyv~GG~~~~~~~ 419 (1057)
+++..++.. .-.+|+.|-. ++||++++..++|-. |.-..-..--++.++.. ++.+||.++.
T Consensus 134 ~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL~-----P~~~~~~~lN~v~in~~hgLla~Gt~~g~--- 198 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFLN-----PFETDSGELNVVSINEEHGLLACGTEDGV--- 198 (703)
T ss_pred cCCccccccCCCccEEEeecC-------cceEEEEcccccccc-----ccccccccceeeeecCccceEEecccCce---
Q ss_pred ceEEEEECCCCc-------EEEeecCCCCCCCcceeEEEEECCEEEEEecCCCCcccCcEEEEECCCCe
Q 036185 420 SSLHVLDTDTLQ-------WKELLINGEGPCARHSHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACL 481 (1057)
Q Consensus 420 ~~v~~yD~~t~~-------W~~~~~~g~~P~~r~~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~ 481 (1057)
++.+|+.+.. =..++........+.-.+...-++-|-+.=|...+. +++||+.+.+
T Consensus 199 --VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~----v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 --VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS----VLIYDLRASK 261 (703)
T ss_pred --EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc----EEEEEcccCC
No 475
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=54.77 E-value=76 Score=37.38 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=61.2
Q ss_pred cCCCCEEEEec--CcccHhHHHHHHhC--CCcEEEEEecCHHHHHHHHHHHH----HcCCCccEEEEeC----Ccc----
Q 036185 893 DCKDEVIVDLF--AGIGYFVLPFLVRA--KARLVYACEWNPCAVEALKHNLQ----ANSVSDHCIVLEG----DNR---- 956 (1057)
Q Consensus 893 ~~~g~~VlDlf--~G~G~fsl~~a~~~--~a~~V~avD~n~~ai~~~~~N~~----~N~~~~~v~~~~~----D~~---- 956 (1057)
+..|++|+=.. .++|.+++.+|+.. |+.+|+++|.+++-++.+++... .+|.+ ..++.. |..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence 46788887765 34787887777554 44679999999999998887421 01221 122321 111
Q ss_pred ccCCCCCccEEEECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 957 FTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 957 ~~~~~~~~D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
+......+|.|+..- +. ...+..+++.+++.|+++.+..
T Consensus 251 ~~t~g~g~D~vid~~-g~-~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 251 ELTGGQGFDDVFVFV-PV-PELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHhCCCCCCEEEEcC-CC-HHHHHHHHHHhccCCeEEEEEc
Confidence 112233588887643 32 4567888999985455555443
No 476
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=54.59 E-value=2.9e+02 Score=32.23 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=55.0
Q ss_pred CCcEEEeeccCCCCCcccceEEEEECCEEEEEcccCCCcccceEEEEECCCCcEEEeecC--CCCC--CCcceeEEEEEC
Q 036185 379 KSKWTLLECSGSVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSLHVLDTDTLQWKELLIN--GEGP--CARHSHSMLAYG 454 (1057)
Q Consensus 379 t~~W~~~~~~g~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v~~yD~~t~~W~~~~~~--g~~P--~~r~~~s~~~~~ 454 (1057)
.+.|+.+. . ..-..--.+.++|++|++.- ...++.+|..- .-+++.+. +.+. ......-.+...
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEEC
Confidence 48999985 2 22234557778999999832 23466666421 11222210 0000 111223355667
Q ss_pred CEEEEEecCCCCc--------------ccCcEEEEECCCCeEEEeeccC
Q 036185 455 SRLYMFGGYNGEK--------------ALGDLYTFDVHACLWKKEDIAA 489 (1057)
Q Consensus 455 ~~lyv~GG~~~~~--------------~~~~l~~yd~~t~~W~~v~~~~ 489 (1057)
+.|+++..+.... ..-.++..|.+..+|.++...+
T Consensus 257 GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 8899988752110 1124677788899999986544
No 477
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=53.34 E-value=53 Score=35.93 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCC-CccEEEEeCCccccCCC---CCccEEEECCCCCChhHHHHHHHHhh---CCCcEEEEEcccccc
Q 036185 930 CAVEALKHNLQANSV-SDHCIVLEGDNRFTAPK---GVANRVCLGLIPTSENSWVTAVQALR---SEGGTLHVHGNVKDS 1002 (1057)
Q Consensus 930 ~ai~~~~~N~~~N~~-~~~v~~~~~D~~~~~~~---~~~D~Vil~~~P~~~~~~~~a~~~l~---~~gg~l~~~~~~~~~ 1002 (1057)
.+++..++|.+..++ ++++.++.|...+.++. .++-++-+|- .....-..++..+. .+||+|++.+... .
T Consensus 140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~~-~ 216 (248)
T PF05711_consen 140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYGH-P 216 (248)
T ss_dssp HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT-H
T ss_pred cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCCC-h
Confidence 367777777777664 45899999999988873 2333444443 22444555555553 3699999999876 2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcee
Q 036185 1003 EEKLWAEHVSKSIYEIARSEGHRWE 1027 (1057)
Q Consensus 1003 ~~~~~~~~~~~~i~~~~~~~g~~~~ 1027 (1057)
. . .+++.+..+++|....
T Consensus 217 g---c----r~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 217 G---C----RKAVDEFRAEHGITDP 234 (248)
T ss_dssp H---H----HHHHHHHHHHTT--S-
T ss_pred H---H----HHHHHHHHHHcCCCCc
Confidence 1 1 3566677777886543
No 478
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=53.23 E-value=3.8e+02 Score=30.20 Aligned_cols=196 Identities=9% Similarity=0.047 Sum_probs=88.6
Q ss_pred EEEEEcccCCCCCCcccccEEEEeCCC-CcEEEeccCCCCCCccccEEEEE--CCEEEEEcccCCCCCCCCcEEEEECC-
Q 036185 303 QILVFGGFGGMGRHARRNDLFLLDPLQ-GTIKAIHTEGSPSPRLGHTSSLI--GDHMFIIGGRADPLNILSDVWVFNMA- 378 (1057)
Q Consensus 303 ~lyvfGG~~~~g~~~~~~d~~~yd~~t-~~W~~l~~~~~P~~R~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yd~~- 378 (1057)
++|+..+.+ +.+..||..+ +++..+... +..-..+.++.. +..+|+.+. . .+.+..|++.
T Consensus 3 ~~y~~~~~~--------~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~ 66 (330)
T PRK11028 3 IVYIASPES--------QQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIAD 66 (330)
T ss_pred EEEEEcCCC--------CCEEEEEECCCCceeeeeEE--ecCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECC
Confidence 477775533 3567777753 566655422 222222233332 446777433 2 2467777775
Q ss_pred CCcEEEeeccCCCCCcccceEEEEE-CCE-EEEEcccCCCcccceEEEEECCCCc--EEEeecCCCCCCCcceeEEEEE-
Q 036185 379 KSKWTLLECSGSVFQPRHRHAAAVI-GSK-IYVFGGLNNDTIFSSLHVLDTDTLQ--WKELLINGEGPCARHSHSMLAY- 453 (1057)
Q Consensus 379 t~~W~~~~~~g~~p~~R~~hsa~~~-~~~-iyv~GG~~~~~~~~~v~~yD~~t~~--W~~~~~~g~~P~~r~~~s~~~~- 453 (1057)
+++++.+.. .+.+..-+..+.. +++ +|+.. +. .+.+..||+.++. ...+.. .+.....|+++..
T Consensus 67 ~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p 135 (330)
T PRK11028 67 DGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDP 135 (330)
T ss_pred CCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCC
Confidence 456765542 1221111222222 444 66653 22 2457778775431 122211 1112223444433
Q ss_pred CC-EEEEEecCCCCcccCcEEEEECCCC-eEEEee-ccCCCCCCceeeEEEEE--CCEEEEEeccCCCCCCCeEEEEECC
Q 036185 454 GS-RLYMFGGYNGEKALGDLYTFDVHAC-LWKKED-IAARSPHARFSHTMFLY--KNYLGLFGGCPVRQNYQELSLLDLQ 528 (1057)
Q Consensus 454 ~~-~lyv~GG~~~~~~~~~l~~yd~~t~-~W~~v~-~~~~~P~~R~~hs~~~~--~~~l~i~GG~~~~~~~~~i~~yd~~ 528 (1057)
++ .+|+..- ..+.+.+||+.+. ...... .....+.+..-+.++.. +..+|+.-. ..+.+.+|++.
T Consensus 136 ~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----~~~~v~v~~~~ 205 (330)
T PRK11028 136 DNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----LNSSVDVWQLK 205 (330)
T ss_pred CCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----CCCEEEEEEEe
Confidence 33 4655432 2346899998763 221100 00011111111223333 346777633 34577777776
Q ss_pred --CCeEEEe
Q 036185 529 --LHIWKHL 535 (1057)
Q Consensus 529 --~~~W~~v 535 (1057)
+.+++.+
T Consensus 206 ~~~~~~~~~ 214 (330)
T PRK11028 206 DPHGEIECV 214 (330)
T ss_pred CCCCCEEEE
Confidence 4455444
No 479
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.93 E-value=74 Score=35.90 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=62.2
Q ss_pred ccCCCCEEEEec--CcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC--CccccC---CCCCc
Q 036185 892 LDCKDEVIVDLF--AGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG--DNRFTA---PKGVA 964 (1057)
Q Consensus 892 ~~~~g~~VlDlf--~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~--D~~~~~---~~~~~ 964 (1057)
.+.+|++||=.. .|+|.+++.+|+..|+ +|++++.+++-.+.+++ .|.+ .+.-... +..+.. ....+
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHhCCCCe
Confidence 356789998776 3688898888877777 59999999988887754 3543 2211111 111111 12347
Q ss_pred cEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 965 NRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 965 D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|.|+ +... ...+..+++.++ ++|.+..+..
T Consensus 209 dvv~-d~~G--~~~~~~~~~~l~-~~G~iv~~G~ 238 (325)
T TIGR02825 209 DCYF-DNVG--GEFSNTVIGQMK-KFGRIAICGA 238 (325)
T ss_pred EEEE-ECCC--HHHHHHHHHHhC-cCcEEEEecc
Confidence 7765 4423 345688888898 6888777654
No 480
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=52.04 E-value=5.1 Score=41.61 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=35.6
Q ss_pred CCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHH
Q 036185 895 KDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKH 937 (1057)
Q Consensus 895 ~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~ 937 (1057)
...++||++||-|-+++.++ .-..+|+|-|++..+...+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~--p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA--PTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhc--chHHHHHHHHhhHHHHHHHhh
Confidence 34689999999999999987 667789999999999887765
No 481
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=51.85 E-value=1e+02 Score=35.58 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC-------ccccCCCCCc
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD-------NRFTAPKGVA 964 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D-------~~~~~~~~~~ 964 (1057)
+.+|++||=..+| +|.+++.+|+..|+.+|+++|.+++-.+.+++ .+.+ .+.-...+ +.+.. ...+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~-~~g~ 255 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGAT-DFINPKDSDKPVSEVIREMT-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC-cEeccccccchHHHHHHHHh-CCCC
Confidence 5678888777442 44455556666777789999999998888754 3443 12111111 11111 2357
Q ss_pred cEEEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 965 NRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 965 D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|+|+-.. . ....+..+++.+++.+|.+......
T Consensus 256 d~vid~~-g-~~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 256 DYSFECT-G-NADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred CEEEECC-C-ChHHHHHHHHhcccCCCEEEEEcCC
Confidence 8776322 2 2456788888887444777776654
No 482
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.48 E-value=1.1e+02 Score=35.31 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=59.8
Q ss_pred ccCCCCEEEEecC-cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---CccccC---CCCCc
Q 036185 892 LDCKDEVIVDLFA-GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---DNRFTA---PKGVA 964 (1057)
Q Consensus 892 ~~~~g~~VlDlf~-G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D~~~~~---~~~~~ 964 (1057)
.+.+|++||=..+ ++|.+++.+|+..|+..|+++|.+++-.+.+++ -+.+ .+.-... |..+.+ ....+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT-DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC-EEEcccccchHHHHHHHHHhCCCC
Confidence 3567888887754 345555556666777679999999998887754 3443 1211111 111111 12257
Q ss_pred cEEEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 965 NRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 965 D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|.|+=.. . ....+..+++.+++.+|.+......
T Consensus 258 d~vid~~-g-~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 258 DYTFECI-G-NVKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred cEEEECC-C-ChHHHHHHHHhhccCCCeEEEEccC
Confidence 8776322 2 2356888899997433877776654
No 483
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.16 E-value=1e+02 Score=35.12 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=59.5
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEE-eCCc----cccCCCCCccE
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVL-EGDN----RFTAPKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~-~~D~----~~~~~~~~~D~ 966 (1057)
+.+|++||=..+| +|.+++.+|+..|+..|+++|.++...+.+++ .+.+ .+.-. ..+. ........+|.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCCCcE
Confidence 4567887777544 56666667766788789999999988777764 3443 12111 1111 11222345787
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEccc
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHGNV 999 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~ 999 (1057)
|+-.. . ....+..+++.|+ ++|.+......
T Consensus 239 vld~~-g-~~~~~~~~~~~l~-~~G~~v~~g~~ 268 (351)
T cd08285 239 VIIAG-G-GQDTFEQALKVLK-PGGTISNVNYY 268 (351)
T ss_pred EEECC-C-CHHHHHHHHHHhh-cCCEEEEeccc
Confidence 76332 2 2346788888888 57766655543
No 484
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.00 E-value=39 Score=31.74 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=47.3
Q ss_pred ecCcccHhHHHHHHh--CCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccC--C---CCCccEEEECCCCC
Q 036185 902 LFAGIGYFVLPFLVR--AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTA--P---KGVANRVCLGLIPT 974 (1057)
Q Consensus 902 lf~G~G~fsl~~a~~--~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~--~---~~~~D~Vil~~~P~ 974 (1057)
+.||.|.++..++.. .+...|+.+|.+++.++.+++. + +.++.||+.+.- . -..+|.|++.. +.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-~~ 72 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT-DD 72 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES-SS
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc-CC
Confidence 457889999888743 3344799999999998887652 2 568899987642 1 24578888776 55
Q ss_pred ChhHHHH
Q 036185 975 SENSWVT 981 (1057)
Q Consensus 975 ~~~~~~~ 981 (1057)
....+..
T Consensus 73 d~~n~~~ 79 (116)
T PF02254_consen 73 DEENLLI 79 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 485
>PTZ00420 coronin; Provisional
Probab=50.69 E-value=5.8e+02 Score=31.63 Aligned_cols=152 Identities=9% Similarity=0.143 Sum_probs=71.8
Q ss_pred CEEEEEcccCCCCCCCCcEEEEECCCCcE-EEeeccCCCCCcccceEEEE-ECCEEEEEcccCCCcccceEEEEECCCCc
Q 036185 354 DHMFIIGGRADPLNILSDVWVFNMAKSKW-TLLECSGSVFQPRHRHAAAV-IGSKIYVFGGLNNDTIFSSLHVLDTDTLQ 431 (1057)
Q Consensus 354 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~R~~hsa~~-~~~~iyv~GG~~~~~~~~~v~~yD~~t~~ 431 (1057)
..+++.||.++ .+.+||+.+..= ..+. . +..-.++.. .++.+++.++.++ .+.+||+.+.+
T Consensus 138 ~~iLaSgS~Dg------tIrIWDl~tg~~~~~i~----~--~~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~ 200 (568)
T PTZ00420 138 YYIMCSSGFDS------FVNIWDIENEKRAFQIN----M--PKKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQE 200 (568)
T ss_pred CeEEEEEeCCC------eEEEEECCCCcEEEEEe----c--CCcEEEEEECCCCCEEEEEecCC-----EEEEEECCCCc
Confidence 35666677654 688899887651 1111 1 111122222 2567777766543 48899998764
Q ss_pred EEE-eecCCCCCCCcceeEEEE----ECCEEEEEecCCCCcccCcEEEEECCC-CeEEEeeccCCCCCCceeeEEEEE--
Q 036185 432 WKE-LLINGEGPCARHSHSMLA----YGSRLYMFGGYNGEKALGDLYTFDVHA-CLWKKEDIAARSPHARFSHTMFLY-- 503 (1057)
Q Consensus 432 W~~-~~~~g~~P~~r~~~s~~~----~~~~lyv~GG~~~~~~~~~l~~yd~~t-~~W~~v~~~~~~P~~R~~hs~~~~-- 503 (1057)
-.. +... ...+....... -++..++.+|.++. ....+..||+.+ ..-.........+ +.-+..+
T Consensus 201 ~i~tl~gH---~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~~~----~~L~p~~D~ 272 (568)
T PTZ00420 201 IASSFHIH---DGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDNAS----APLIPHYDE 272 (568)
T ss_pred EEEEEecc---cCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecCCc----cceEEeeeC
Confidence 321 1111 01111111111 24456666676542 123588888764 2111110000000 0011122
Q ss_pred -CCEEEEEeccCCCCCCCeEEEEECCCCeEEEe
Q 036185 504 -KNYLGLFGGCPVRQNYQELSLLDLQLHIWKHL 535 (1057)
Q Consensus 504 -~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v 535 (1057)
.+.+|+.|..+ ..+.+|++....-..+
T Consensus 273 ~tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 273 STGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 36778777522 3578888776654444
No 486
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=50.54 E-value=70 Score=35.95 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=61.0
Q ss_pred cCCCCEEEEec--CcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-CCccccC---CCCCccE
Q 036185 893 DCKDEVIVDLF--AGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-GDNRFTA---PKGVANR 966 (1057)
Q Consensus 893 ~~~g~~VlDlf--~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~D~~~~~---~~~~~D~ 966 (1057)
+.+|++||=.. .|+|.+++.+|+..|+ +|++++.+++-.+.+++ .|.+ .+.-.. .|..+.+ ....+|.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~-~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD-AVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHCCCCcEE
Confidence 56788888776 5788888888877777 59999999998888765 3543 221111 1211111 1234776
Q ss_pred EEECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 967 VCLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 967 Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
|+ |... ...+..+++.++ ++|.+..+.
T Consensus 215 vl-d~~g--~~~~~~~~~~l~-~~G~iv~~g 241 (329)
T cd08294 215 YF-DNVG--GEFSSTVLSHMN-DFGRVAVCG 241 (329)
T ss_pred EE-ECCC--HHHHHHHHHhhc-cCCEEEEEc
Confidence 65 4422 366788888887 577776654
No 487
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=49.15 E-value=1.1e+02 Score=35.44 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=58.5
Q ss_pred cCCCCEEEEecCc-ccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeC---CccccC---CCCCcc
Q 036185 893 DCKDEVIVDLFAG-IGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEG---DNRFTA---PKGVAN 965 (1057)
Q Consensus 893 ~~~g~~VlDlf~G-~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~---D~~~~~---~~~~~D 965 (1057)
+.+|++||=..+| +|.+++.+|+..|+++|++++.+++-.+.+++ .|.+. +.-... +..+.+ ....+|
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~-~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTE-FVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCce-EEcccccchhHHHHHHHHhCCCCC
Confidence 5678887776432 44444556666777689999999998887754 34431 111111 111111 122578
Q ss_pred EEEECCCCCChhHHHHHHHHhhCCCcEEEEEcccc
Q 036185 966 RVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVK 1000 (1057)
Q Consensus 966 ~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~~~ 1000 (1057)
+|+ +-.. ....+..++..+++.+|.+.+.....
T Consensus 260 ~vi-d~~G-~~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 260 YSF-ECTG-NIDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred EEE-ECCC-ChHHHHHHHHHhhcCCCEEEEECcCC
Confidence 665 3312 24467778888873248888877654
No 488
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=49.04 E-value=83 Score=35.77 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=63.1
Q ss_pred ccCCCCEEEEecC--cccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEe-C-CccccC---CCCCc
Q 036185 892 LDCKDEVIVDLFA--GIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLE-G-DNRFTA---PKGVA 964 (1057)
Q Consensus 892 ~~~~g~~VlDlf~--G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~-~-D~~~~~---~~~~~ 964 (1057)
.+.+|++||=..+ |+|.+++.+|+..|+ +|+++..+++-.+.+++.+ |.+ .+.-.. . |..+.+ ....+
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~-~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFD-DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCc-eeEEcCCcccHHHHHHHhCCCCc
Confidence 3578899988775 788898989877777 4999999998888776532 443 121111 1 221111 12347
Q ss_pred cEEEECCCCCChhHHHHHHHHhhCCCcEEEEEcc
Q 036185 965 NRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGN 998 (1057)
Q Consensus 965 D~Vil~~~P~~~~~~~~a~~~l~~~gg~l~~~~~ 998 (1057)
|.|+ |... ...+..+++.|+ ++|.+..+..
T Consensus 223 d~v~-d~~g--~~~~~~~~~~l~-~~G~iv~~G~ 252 (338)
T cd08295 223 DIYF-DNVG--GKMLDAVLLNMN-LHGRIAACGM 252 (338)
T ss_pred EEEE-ECCC--HHHHHHHHHHhc-cCcEEEEecc
Confidence 7776 4423 366888899998 6787776654
No 489
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=48.75 E-value=7.1e+02 Score=32.10 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=22.5
Q ss_pred eEEEEECCEEEEEcccCCC-----cccceEEEEECCCCc--EEEe
Q 036185 398 HAAAVIGSKIYVFGGLNND-----TIFSSLHVLDTDTLQ--WKEL 435 (1057)
Q Consensus 398 hsa~~~~~~iyv~GG~~~~-----~~~~~v~~yD~~t~~--W~~~ 435 (1057)
.+.++.++.+|+ |+...+ .....+..||..|++ |..-
T Consensus 310 s~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 310 SPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 344556777666 543221 234668999998875 6544
No 490
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=48.50 E-value=8.3e+02 Score=32.83 Aligned_cols=210 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred eEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCC-------------CccccEEEEE--CC
Q 036185 290 HSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPS-------------PRLGHTSSLI--GD 354 (1057)
Q Consensus 290 hsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~-------------~R~~hs~v~~--~~ 354 (1057)
|..++..+. +.|||.-..+. .+..+|+.++.-..+....... -..-+.+++. ++
T Consensus 627 ~GIavd~~g---n~LYVaDt~n~--------~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 627 QGLAYNAKK---NLLYVADTENH--------ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred cEEEEeCCC---CEEEEEeCCCc--------eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC
Q ss_pred EEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccC------------CCCCcccceEEEEECCEEEEEcccCCCcccceE
Q 036185 355 HMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSG------------SVFQPRHRHAAAVIGSKIYVFGGLNNDTIFSSL 422 (1057)
Q Consensus 355 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g------------~~p~~R~~hsa~~~~~~iyv~GG~~~~~~~~~v 422 (1057)
.+||....+. .+++||+.+.....+...| .....-.+-+..-.++.|||....++. +
T Consensus 696 ~LyVad~~~~------~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-----I 764 (1057)
T PLN02919 696 KVYIAMAGQH------QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-----I 764 (1057)
T ss_pred eEEEEECCCC------eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-----E
Q ss_pred EEEECCCCcEEEeecCCCCCCCcc------------------eeEEEEECCEEEEEecCCCCcccCcEEEEECCCCeEEE
Q 036185 423 HVLDTDTLQWKELLINGEGPCARH------------------SHSMLAYGSRLYMFGGYNGEKALGDLYTFDVHACLWKK 484 (1057)
Q Consensus 423 ~~yD~~t~~W~~~~~~g~~P~~r~------------------~~s~~~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~~ 484 (1057)
.+||+.++....+........... ...++.-++.+|+.-..++. |.+||+.+.....
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~t 839 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTT 839 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEE
Q ss_pred eeccCCCCCC----------ceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCe
Q 036185 485 EDIAARSPHA----------RFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHI 531 (1057)
Q Consensus 485 v~~~~~~P~~----------R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~ 531 (1057)
+...+..-.. +-...++.-++++||... ..+.|.++|+.+.+
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt-----~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT-----NNSLIRYLDLNKGE 891 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-----CCCEEEEEECCCCc
No 491
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=47.58 E-value=4.2e+02 Score=31.31 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=31.6
Q ss_pred eEEEEECCccCCcEEEEEcccCCCCCCcccccEEEEeCCCCcEEEeccCCCCCCccccEEEE---E-CCEEEEEcccCC
Q 036185 290 HSACILGNSINDSQILVFGGFGGMGRHARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSL---I-GDHMFIIGGRAD 364 (1057)
Q Consensus 290 hsa~~~~~~~~~~~lyvfGG~~~~g~~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~---~-~~~Iyv~GG~~~ 364 (1057)
|+.+..+.+ .|++||- ...++|++.+.++..-.+ - .+++.+.+. . ++..++.||.++
T Consensus 85 ~al~s~n~G-----~~l~ag~-------i~g~lYlWelssG~LL~v-----~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 85 HALASSNLG-----YFLLAGT-------ISGNLYLWELSSGILLNV-----L-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeecCCCc-----eEEEeec-------ccCcEEEEEeccccHHHH-----H-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 555666666 7777772 234677777766653211 1 122222222 2 567888888766
No 492
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=46.84 E-value=3.5e+02 Score=31.72 Aligned_cols=187 Identities=18% Similarity=0.332 Sum_probs=91.3
Q ss_pred CcccccEEEEeCCCCcEEEeccCCCCCCccccEEEEECCEEEEEcccCCCCCCCCcEEEEECCCCcEEEeeccCCCCCcc
Q 036185 316 HARRNDLFLLDPLQGTIKAIHTEGSPSPRLGHTSSLIGDHMFIIGGRADPLNILSDVWVFNMAKSKWTLLECSGSVFQPR 395 (1057)
Q Consensus 316 ~~~~~d~~~yd~~t~~W~~l~~~~~P~~R~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R 395 (1057)
....|++|++|-.-+---.+. ++-..-.-+++-.+++..|++-= ..++-++..|++.-.=-++- |.+-.|-
T Consensus 402 de~~N~vYilDe~lnvvGklt--Gl~~gERIYAvRf~gdv~yiVTf-----rqtDPlfviDlsNPenPkvl--GeLKIPG 472 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLT--GLAPGERIYAVRFVGDVLYIVTF-----RQTDPLFVIDLSNPENPKVL--GELKIPG 472 (603)
T ss_pred CCccceeEEEcCCCcEEEEEe--ccCCCceEEEEEEeCceEEEEEE-----eccCceEEEEcCCCCCCcee--EEEecCC
Confidence 457899999998877666665 44444445666677888887742 33456788887653211110 1222222
Q ss_pred cceEEEEEC-CEEEEEcccCCCcccceEEEEECCCCc----EEEeecCCCC-CCCcceeEEEEECC--EEEEEecCCCCc
Q 036185 396 HRHAAAVIG-SKIYVFGGLNNDTIFSSLHVLDTDTLQ----WKELLINGEG-PCARHSHSMLAYGS--RLYMFGGYNGEK 467 (1057)
Q Consensus 396 ~~hsa~~~~-~~iyv~GG~~~~~~~~~v~~yD~~t~~----W~~~~~~g~~-P~~r~~~s~~~~~~--~lyv~GG~~~~~ 467 (1057)
+..-..-++ +++.=+|-.++.- .+-.||...-. -+....+.-. |.-+ .|-+..++. .|++.--+.+
T Consensus 473 fS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~wspvf~-dhHAFl~d~~~~ifFlPay~~-- 546 (603)
T COG4880 473 FSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAWSPVFY-DHHAFLYDPEAEIFFLPAYLG-- 546 (603)
T ss_pred chhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhcchhhh-ccceeecCCcccEEEecccCc--
Confidence 222222233 3444455444322 23445443211 0000000001 2233 344444443 3555532221
Q ss_pred ccCcEEEEECCCCeEEEee--ccCCCCCCceeeEEEEECCEEEEEeccCCCCCCCeEEEEECCCCeEEEee
Q 036185 468 ALGDLYTFDVHACLWKKED--IAARSPHARFSHTMFLYKNYLGLFGGCPVRQNYQELSLLDLQLHIWKHLK 536 (1057)
Q Consensus 468 ~~~~l~~yd~~t~~W~~v~--~~~~~P~~R~~hs~~~~~~~l~i~GG~~~~~~~~~i~~yd~~~~~W~~v~ 536 (1057)
-++|-.+.+ .++. .....+.- -+...++.+|++|| +++|.|| .+.|+.+.
T Consensus 547 ----gyif~iedg--~kl~k~~e~k~na~----RA~fi~dylY~vg~-------~ev~~ld--enswe~Vg 598 (603)
T COG4880 547 ----GYIFFIEDG--SKLRKRAERKLNAD----RAFFIKDYLYLVGG-------NEVWKLD--ENSWEVVG 598 (603)
T ss_pred ----cEEEEEecC--ceeeehhhhcccce----eeEEecceEEEecc-------ceeEEec--cchHhhhh
Confidence 234444443 1111 11122322 24567999999999 4899987 45677654
No 493
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.89 E-value=53 Score=36.65 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=49.6
Q ss_pred CCCCEEEEecCccc---HhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCcccc
Q 036185 894 CKDEVIVDLFAGIG---YFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFT 958 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G---~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~ 958 (1057)
..|++||==++|.| .+++.+| ++|+ ++..+|+|++..+...+.++.+| ++..+..|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa-~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFA-KRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHH-HhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCH
Confidence 46899999999888 4788887 4666 69999999999999999998886 588888887653
No 494
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=45.84 E-value=14 Score=39.95 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=27.8
Q ss_pred cCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHH
Q 036185 893 DCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPC 930 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ 930 (1057)
+..|..++|+|+|+|..+-.+- +.+ ..|+|.|+--.
T Consensus 25 ~~s~k~f~DiFaGtGVV~~~fk-k~~-n~iiaNDle~y 60 (330)
T COG3392 25 DLSGKIFCDIFAGTGVVGRFFK-KAG-NKIIANDLEYY 60 (330)
T ss_pred ccCCCeeeeeccCccHHHHHHH-Hhc-chhhhchHHHH
Confidence 4578899999999999997763 343 45999998443
No 495
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=45.83 E-value=3.8e+02 Score=33.11 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=49.4
Q ss_pred CCCCEEEEecCcccHhHHHHHHh--CCCcEEEEEecCHHHHHHHHHHHHHcCC-------CccEEEEeCCccccCC----
Q 036185 894 CKDEVIVDLFAGIGYFVLPFLVR--AKARLVYACEWNPCAVEALKHNLQANSV-------SDHCIVLEGDNRFTAP---- 960 (1057)
Q Consensus 894 ~~g~~VlDlf~G~G~fsl~~a~~--~~a~~V~avD~n~~ai~~~~~N~~~N~~-------~~~v~~~~~D~~~~~~---- 960 (1057)
.+|++|| ++.|+|++|..+++. ....+|++++.+++.++.+.+++..+++ ..+++++.+|+.+...
T Consensus 78 ~~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 3566665 455567777766532 1234699999999888777666654322 1358899999876421
Q ss_pred CCCccEEEECC
Q 036185 961 KGVANRVCLGL 971 (1057)
Q Consensus 961 ~~~~D~Vil~~ 971 (1057)
-...|+||.+.
T Consensus 157 LggiDiVVn~A 167 (576)
T PLN03209 157 LGNASVVICCI 167 (576)
T ss_pred hcCCCEEEEcc
Confidence 13478888764
No 496
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=45.73 E-value=14 Score=40.68 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=35.8
Q ss_pred hccCCCCEEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHH
Q 036185 891 RLDCKDEVIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVE 933 (1057)
Q Consensus 891 ~~~~~g~~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~ 933 (1057)
++...|++|||++||.|--++.+. ..++..|.+.|.|.+.++
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~-~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAF-VKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred heEecCceeEecCCcccccchhhh-hhccceeeeEecchhhee
Confidence 345679999999999999999987 466678999999999884
No 497
>PTZ00420 coronin; Provisional
Probab=45.43 E-value=6.9e+02 Score=30.99 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=50.8
Q ss_pred EEEEEcccCCCcccceEEEEECCCCcEE-EeecCCCCCCCcceeEEE-EECCEEEEEecCCCCcccCcEEEEECCCCeEE
Q 036185 406 KIYVFGGLNNDTIFSSLHVLDTDTLQWK-ELLINGEGPCARHSHSML-AYGSRLYMFGGYNGEKALGDLYTFDVHACLWK 483 (1057)
Q Consensus 406 ~iyv~GG~~~~~~~~~v~~yD~~t~~W~-~~~~~g~~P~~r~~~s~~-~~~~~lyv~GG~~~~~~~~~l~~yd~~t~~W~ 483 (1057)
.+++.||.++ .+.+||+.+.+=. .+.. +. .-.++. ..++.+++.++.++ .+.+||+.+..-.
T Consensus 139 ~iLaSgS~Dg-----tIrIWDl~tg~~~~~i~~----~~--~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFDS-----FVNIWDIENEKRAFQINM----PK--KLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCCC-----eEEEEECCCCcEEEEEec----CC--cEEEEEECCCCCEEEEEecCC-----EEEEEECCCCcEE
Confidence 4556677654 4788898876521 1111 11 112222 23566777766443 4889999875422
Q ss_pred EeeccCCCCCCceeeEEE--E--ECCEEEEEeccCCCCCCCeEEEEECCC
Q 036185 484 KEDIAARSPHARFSHTMF--L--YKNYLGLFGGCPVRQNYQELSLLDLQL 529 (1057)
Q Consensus 484 ~v~~~~~~P~~R~~hs~~--~--~~~~l~i~GG~~~~~~~~~i~~yd~~~ 529 (1057)
.. .......+..-... . -++..++.+|.+.. ....+.++|+.+
T Consensus 203 ~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 SS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred EE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 11 11111111111111 1 23455666665432 223688888774
No 498
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=43.77 E-value=78 Score=35.92 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=58.7
Q ss_pred cCCCCEEEEecCcc-cHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC----ccccCCCCCccEE
Q 036185 893 DCKDEVIVDLFAGI-GYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD----NRFTAPKGVANRV 967 (1057)
Q Consensus 893 ~~~g~~VlDlf~G~-G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D----~~~~~~~~~~D~V 967 (1057)
..++++||-..+|. |.+.+.+|+..|+..|++++-+++..+.+++ .+.. .+.-.... .........+|+|
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD-DTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-EEecCccccHHHHHHHhCCCCCCEE
Confidence 45788888875543 6777777766777669999988888777643 2332 11111111 1122223458888
Q ss_pred EECCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 968 CLGLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 968 il~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
+-.. . ....+..+++.|+ ++|.+...+
T Consensus 232 ld~~-g-~~~~~~~~~~~l~-~~G~~v~~g 258 (343)
T cd08236 232 IEAA-G-SPATIEQALALAR-PGGKVVLVG 258 (343)
T ss_pred EECC-C-CHHHHHHHHHHhh-cCCEEEEEc
Confidence 7442 2 2456788888898 567666554
No 499
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=43.52 E-value=33 Score=40.71 Aligned_cols=106 Identities=11% Similarity=0.001 Sum_probs=63.5
Q ss_pred EEEEecCcccHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCCccccCC--------CCCccEEEE
Q 036185 898 VIVDLFAGIGYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAP--------KGVANRVCL 969 (1057)
Q Consensus 898 ~VlDlf~G~G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D~~~~~~--------~~~~D~Vil 969 (1057)
.+|-+.=|.|.+...+-...+..+++|||++|.+++.++.+...-.-. +..+.-.|..+++. ...||+++.
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred cEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 444444455666654433355567999999999999999886443322 33444455544432 346888877
Q ss_pred CC-----------CCCC-hhHHHHHHHHhhCCCcEEEEEcccccchh
Q 036185 970 GL-----------IPTS-ENSWVTAVQALRSEGGTLHVHGNVKDSEE 1004 (1057)
Q Consensus 970 ~~-----------~P~~-~~~~~~a~~~l~~~gg~l~~~~~~~~~~~ 1004 (1057)
+. +|.+ +..+..+.+...++.|+..++-..++...
T Consensus 377 dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~ 423 (482)
T KOG2352|consen 377 DVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSF 423 (482)
T ss_pred ECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcch
Confidence 53 1111 22344444444468999988888887654
No 500
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=42.13 E-value=1.6e+02 Score=33.32 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCEEEEecCcc-cHhHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHcCCCccEEEEeCC---ccccCC-CCCccEEEE
Q 036185 895 KDEVIVDLFAGI-GYFVLPFLVRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGD---NRFTAP-KGVANRVCL 969 (1057)
Q Consensus 895 ~g~~VlDlf~G~-G~fsl~~a~~~~a~~V~avD~n~~ai~~~~~N~~~N~~~~~v~~~~~D---~~~~~~-~~~~D~Vil 969 (1057)
++++||...+|. |.+++.+|+..|+.+|++++.+++..+.+++ .+.+ . ++..+ ...... ...+|+|+-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD-E--TVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC-E--EEcCCchhhhhhhccCCCccEEEE
Confidence 677877766554 7777777766777679999999988886544 2332 1 22211 112222 234788764
Q ss_pred CCCCCChhHHHHHHHHhhCCCcEEEEEc
Q 036185 970 GLIPTSENSWVTAVQALRSEGGTLHVHG 997 (1057)
Q Consensus 970 ~~~P~~~~~~~~a~~~l~~~gg~l~~~~ 997 (1057)
.. . ....+..+++.|+ ++|.+..+.
T Consensus 238 ~~-g-~~~~~~~~~~~L~-~~G~~v~~g 262 (339)
T cd08232 238 AS-G-APAALASALRVVR-PGGTVVQVG 262 (339)
T ss_pred CC-C-CHHHHHHHHHHHh-cCCEEEEEe
Confidence 32 2 2345778888898 566666554
Done!