BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036188
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 143/204 (70%), Gaps = 3/204 (1%)
Query: 10 DQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMM 69
+++ +A QLA+ VLPM +++ EL + EI+ KAGPG ++S +IA+QL T N DAP+M
Sbjct: 17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSLDAS---GARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVI 126
LDR+LRLLA Y ++ CS+ +RLY L +V+KY V N+DGV + L + QDKV+
Sbjct: 77 LDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVL 136
Query: 127 LESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYK 186
+ESW LKDA+L+GGIPFN+A+G+ FEY G +PRFNK FN M +++++ M ILE+Y
Sbjct: 137 MESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYT 196
Query: 187 GFDNIKQLVDVGGSLGVTLQAITT 210
GF+ +K LVDVGG G + I +
Sbjct: 197 GFEGLKSLVDVGGGTGAVINTIVS 220
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 132/198 (66%), Gaps = 4/198 (2%)
Query: 15 YADQLATGVVLPMAIQAVYELGIFEILDKAGPGTK-LSASDIAAQLLTKNKDAPMMLDRI 73
+A QLA+ VLPMA++A EL + EI+ K+ P + +S ++IAAQL T N +AP+MLDR+
Sbjct: 24 FAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRV 83
Query: 74 LRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESW 130
LRLLASYSVV +L + RLY L V K+ N+DGV L P + + DKV+LE W
Sbjct: 84 LRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW 143
Query: 131 SQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDN 190
LKDAILEGGIPFN+A+G++IF+Y G + R NK FN M + +++ M ILE Y GF+
Sbjct: 144 FYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEG 203
Query: 191 IKQLVDVGGSLGVTLQAI 208
+ +VDVGG G I
Sbjct: 204 LTTIVDVGGGTGAVASMI 221
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 134/198 (67%), Gaps = 5/198 (2%)
Query: 15 YADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTK-NKDAPMMLDRI 73
+A QLA+ VLPM ++ ELG+ EIL AG G L+ +++AA+L + N +AP M+DRI
Sbjct: 23 FALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRI 81
Query: 74 LRLLASYSVVECSLDASGARRL---YSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESW 130
LRLLASY+VV C ++ RL Y V K+ PN+DGV + L + QDKV++ESW
Sbjct: 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 141
Query: 131 SQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDN 190
LKDA+L+GGIPFN+A+G+ FEY G +PRFN+ FN M N++ ++ +LE Y GF+
Sbjct: 142 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201
Query: 191 IKQLVDVGGSLGVTLQAI 208
+ LVDVGG +G T+ AI
Sbjct: 202 LGTLVDVGGGVGATVAAI 219
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 7/209 (3%)
Query: 9 RDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGP-GTKLSASDIAAQLL--TKNKD 65
D + A L T +V P + A +L +FEI+ KA P G +S S+IA++L T++ D
Sbjct: 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 80
Query: 66 APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQ 122
P LDR+LRLLASYSV+ + ++ GA R+Y L+ V KY VP++ L +
Sbjct: 81 LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVILESWSQLKDAILEGGIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNI 181
+L+ W K+A+++ I F HGV +E+ G + + N+ FN +M + + M +
Sbjct: 141 YPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRM 200
Query: 182 LESYKGFDNIKQLVDVGGSLGVTLQAITT 210
LE Y GF+ I LVDVGG G L+ I +
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIIS 229
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 7/207 (3%)
Query: 9 RDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGP-GTKLSASDIAAQLL--TKNKD 65
D + A L T +V P + A +L +FEI+ KA P G S S+IA++L T++ D
Sbjct: 21 EDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSD 80
Query: 66 APMMLDRILRLLASYSVVECS---LDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQ 122
P LDR LRLLASYSV+ + ++ GA R+Y L+ V KY VP++ L +
Sbjct: 81 LPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVILESWSQLKDAILEGGIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNI 181
+L+ W K+A+++ I F HGV +E+ G + + N+ FN + + +
Sbjct: 141 YPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRX 200
Query: 182 LESYKGFDNIKQLVDVGGSLGVTLQAI 208
LE Y GF+ I LVDVGG G L+ I
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELI 227
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 72 RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWS 131
R++R LA E + Y+L S+ V D + L P+++ + D + S+
Sbjct: 73 RLMRYLAHNGFFEI---ITKEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYH 128
Query: 132 QLKDAILEGGIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDN 190
+LK I E + F G +++ NP +N FN AM + + L+ + + FD
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDG 188
Query: 191 IKQLVDVGGSLGVTLQAIT 209
++ +VDVGG G T + I
Sbjct: 189 LESIVDVGGGTGTTAKIIC 207
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 72 RILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWS 131
R+ R LA E + Y+L S+ V D + L P ++ + D + S+
Sbjct: 73 RLXRYLAHNGFFEI---ITKEEESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYH 128
Query: 132 QLKDAILEGGIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDN 190
+LK I E + F G +++ NP +N FN A + + L+ + + FD
Sbjct: 129 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDG 188
Query: 191 IKQLVDVGGSLGVTLQAIT 209
++ +VDVGG G T + I
Sbjct: 189 LESIVDVGGGTGTTAKIIC 207
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 9 RDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPM 68
+ Q+ Y + A V M+++ E+ I I+ G LS Q+ + D
Sbjct: 15 KAQALLYKNMYA--FVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-- 70
Query: 69 MLDRILRLLASYSVVE--CSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVI 126
+ R++R LA E + + Y+L S+ V + + L P+++ + D +
Sbjct: 71 -VQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTL 128
Query: 127 LESWSQLKDAILEGGIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESY 185
S+ LK + E + F G ++E+ NP +N +N A+ + + ++ + +
Sbjct: 129 STSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCN 188
Query: 186 KGFDNIKQLVDVGGSLGVTLQAIT 209
F+ ++ +VDVGG G T + I
Sbjct: 189 LVFEGLESIVDVGGGNGTTGKIIC 212
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 26/187 (13%)
Query: 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87
AI ELG+ E+L + GP T T +A ++ LR L
Sbjct: 54 AIHVAVELGVPELLQE-GPRTA-----------TALAEATGAHEQTLRRLLRLLATVGVF 101
Query: 88 DASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVI------LESWSQLKDAILEGG 141
D G L++ N++S +P+ P + D +W QL ++ G
Sbjct: 102 DDLGHDDLFAQNALSAVLLPD-------PASPVATDARFQAAPWHWRAWEQLTHSVRTGE 154
Query: 142 IPFNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSL 201
F+ A+G ++ +P+ + FN A + + + +Y F VD+GG
Sbjct: 155 ASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGR 213
Query: 202 GVTLQAI 208
G A+
Sbjct: 214 GSLXAAV 220
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 141 GIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVM 178
GIP F HGV E GL P+F+ F +A T + +
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMAL 98
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 141 GIP-FNRAHGVHIFEYAGLNPRFNKHFNAAMYNYTSLVM 178
GIP F HGV E GL P+F+ F +A T + +
Sbjct: 60 GIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMAL 98
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 25 LPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVE 84
L ++A+ LG+ E DK D+ +++ + +L ++RL + E
Sbjct: 60 LAAIVRAMDTLGV-EYGDKERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQE 118
Query: 85 CSLDASGARRLYSLNSVSKYYVPNKDGVLLG---PLIQ-IIQDKV----ILESWSQLKDA 136
C R Y LN +KYY+ + D + G P Q I++ +V I+E+ K+
Sbjct: 119 CF----NRSREYQLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNL 174
Query: 137 ILE----GGIPFNRAHGVHIFE 154
GG R +H FE
Sbjct: 175 HFRLFDVGGQRSERKKWIHCFE 196
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 9 RDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPM 68
DQ++ + A G ++ + A ELG+F++L +A PG L + +AA + +
Sbjct: 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PG-PLDVAAVAAGVRASAHGTEL 62
Query: 69 MLDRI--LRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVI 126
+LD L+LL ++ G + Y +S Y+ +++ + +
Sbjct: 63 LLDICVSLKLL--------KVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTS 113
Query: 127 LESWSQLKDAILEGGIPFNRAHGV 150
W L DA+ EG + GV
Sbjct: 114 YRCWGHLADAVREGRNQYLETFGV 137
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 43 KAGPGTKLSA-SDIAAQLLTKNKDAPMMLDRILRLLASYS--VVECSLDASG-ARRLYSL 98
K P KL +D ++ KNKD + L+ + R+LA +++ DAS R
Sbjct: 139 KKIPPNKLDEYTDAXXKIFDKNKDGRLDLNDLARILALQENFLLQFKXDASSQVERKRDF 198
Query: 99 NSVSKYYVPNKDGVLLGPLI 118
+ +Y ++ G L GP +
Sbjct: 199 EKIFAHYDVSRTGALEGPEV 218
>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
Length = 246
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 40 ILDKAG--PGTKLSASDIAAQLLTKNKDAPMMLDR 72
I+ K G PGT+LS ++ +QL+ KNKD + D
Sbjct: 202 IIGKNGVSPGTRLSVAERLSQLMMKNKDEKEVSDH 236
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 46 PGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLD-------ASGARRLYSL 98
P K D T N P ++ +L L Y V E +D A+ AR LYS+
Sbjct: 317 PDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSL-RYWVTEMHVDGFRFDLAAALARELYSV 375
Query: 99 NSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAH 148
N ++ +++ + +L Q K+I E W + G P+ A
Sbjct: 376 NMLNTFFIALQQDPILS------QVKLIAEPWDVGQGGYQVGNFPYQWAE 419
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 116 PLIQII-QDKVILESWSQLKDAILEGGIPFNRAHGVHIFE 154
PL +I DK+ E W++LK +++GG + G F+
Sbjct: 199 PLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQ 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,084,556
Number of Sequences: 62578
Number of extensions: 243952
Number of successful extensions: 519
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 24
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)