Query 036188
Match_columns 210
No_of_seqs 119 out of 1085
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 100.0 8.4E-34 2.9E-38 244.0 19.8 201 5-209 13-220 (364)
2 3reo_A (ISO)eugenol O-methyltr 100.0 1.2E-33 4.1E-38 243.3 17.9 205 5-209 14-222 (368)
3 3lst_A CALO1 methyltransferase 100.0 7.7E-33 2.6E-37 236.3 18.3 185 9-209 19-203 (348)
4 4a6d_A Hydroxyindole O-methylt 100.0 1.8E-32 6.1E-37 234.8 16.3 189 11-210 7-199 (353)
5 3gwz_A MMCR; methyltransferase 100.0 8.6E-32 2.9E-36 231.7 16.5 185 10-209 36-221 (369)
6 1zg3_A Isoflavanone 4'-O-methy 100.0 1.5E-31 5.2E-36 229.0 15.7 199 6-209 4-212 (358)
7 1fp2_A Isoflavone O-methyltran 100.0 2.1E-31 7.1E-36 227.7 16.3 198 3-209 7-207 (352)
8 2ip2_A Probable phenazine-spec 100.0 5.3E-31 1.8E-35 223.2 18.4 180 11-209 7-186 (334)
9 3i53_A O-methyltransferase; CO 100.0 1.4E-31 4.7E-36 226.9 12.1 182 13-209 6-188 (332)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-30 6E-35 223.5 17.3 204 6-209 16-228 (372)
11 1qzz_A RDMB, aclacinomycin-10- 100.0 2.7E-29 9.3E-34 215.6 13.8 185 10-209 14-201 (374)
12 3dp7_A SAM-dependent methyltra 100.0 2.1E-29 7.1E-34 216.3 12.7 185 5-209 8-198 (363)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.6E-28 5.4E-33 209.9 15.0 182 13-209 20-202 (360)
14 1x19_A CRTF-related protein; m 100.0 1.2E-27 4.2E-32 204.7 15.2 181 3-209 21-209 (359)
15 2r3s_A Uncharacterized protein 99.9 1.6E-27 5.4E-32 201.5 14.4 174 14-209 8-184 (335)
16 3mcz_A O-methyltransferase; ad 99.9 1.4E-26 4.9E-31 197.3 13.9 182 2-209 14-198 (352)
17 2qm3_A Predicted methyltransfe 98.2 1.8E-06 6.1E-11 73.8 6.5 55 36-106 47-102 (373)
18 2heo_A Z-DNA binding protein 1 97.8 2E-05 6.7E-10 50.8 3.8 55 34-99 12-66 (67)
19 1qbj_A Protein (double-strande 97.7 7E-05 2.4E-09 50.0 5.4 70 30-106 8-77 (81)
20 1y0u_A Arsenical resistance op 97.6 7.8E-05 2.7E-09 51.1 4.9 63 27-104 26-88 (96)
21 1qgp_A Protein (double strande 97.5 0.00011 3.6E-09 48.7 4.2 61 33-100 15-75 (77)
22 3b73_A PHIH1 repressor-like pr 97.4 6.8E-05 2.3E-09 53.1 2.8 63 33-107 14-78 (111)
23 3mq0_A Transcriptional repress 97.3 0.00018 6.3E-09 58.9 4.3 59 35-104 33-91 (275)
24 1xmk_A Double-stranded RNA-spe 97.3 0.00022 7.6E-09 47.3 3.7 61 33-103 12-73 (79)
25 3pqk_A Biofilm growth-associat 97.0 0.001 3.5E-08 45.7 5.3 51 28-86 19-69 (102)
26 2y75_A HTH-type transcriptiona 97.0 0.00086 2.9E-08 48.3 4.8 47 48-101 25-71 (129)
27 3jth_A Transcription activator 96.9 0.00057 2E-08 46.7 3.4 51 28-86 19-69 (98)
28 2oqg_A Possible transcriptiona 96.9 0.0007 2.4E-08 47.4 3.9 58 32-102 21-81 (114)
29 1mkm_A ICLR transcriptional re 96.9 0.00078 2.7E-08 54.1 4.6 57 35-102 11-67 (249)
30 2xrn_A HTH-type transcriptiona 96.9 0.00062 2.1E-08 54.5 3.9 61 35-105 9-69 (241)
31 2htj_A P fimbrial regulatory p 96.9 0.0014 4.9E-08 43.2 5.0 45 35-86 3-47 (81)
32 1u2w_A CADC repressor, cadmium 96.9 0.00088 3E-08 47.9 4.2 54 26-86 36-89 (122)
33 3r4k_A Transcriptional regulat 96.9 0.00031 1.1E-08 57.0 2.0 61 35-105 9-69 (260)
34 1r1u_A CZRA, repressor protein 96.8 0.00098 3.4E-08 46.3 3.8 50 29-86 23-72 (106)
35 3cuo_A Uncharacterized HTH-typ 96.7 0.0012 3.9E-08 44.9 3.6 51 29-86 21-71 (99)
36 3ech_A MEXR, multidrug resista 96.7 0.0051 1.7E-07 44.4 7.3 79 1-86 1-84 (142)
37 3f6o_A Probable transcriptiona 96.7 0.00084 2.9E-08 47.7 2.7 52 27-86 13-64 (118)
38 2kko_A Possible transcriptiona 96.7 0.00064 2.2E-08 47.6 2.0 46 33-86 26-71 (108)
39 2jsc_A Transcriptional regulat 96.7 0.0011 3.9E-08 47.0 3.3 52 27-86 16-67 (118)
40 2o0y_A Transcriptional regulat 96.7 0.00092 3.2E-08 54.1 3.1 58 35-103 26-83 (260)
41 2g7u_A Transcriptional regulat 96.7 0.001 3.5E-08 53.7 3.3 60 35-106 17-76 (257)
42 2jt1_A PEFI protein; solution 96.7 0.0019 6.5E-08 42.5 4.0 44 37-86 9-57 (77)
43 4a5n_A Uncharacterized HTH-typ 96.6 0.0051 1.7E-07 44.7 6.5 78 12-106 15-94 (131)
44 1xn7_A Hypothetical protein YH 96.5 0.0028 9.7E-08 41.8 4.2 43 37-86 7-49 (78)
45 2ia2_A Putative transcriptiona 96.5 0.001 3.5E-08 54.0 2.5 59 35-105 24-82 (265)
46 2hzt_A Putative HTH-type trans 96.5 0.0091 3.1E-07 41.4 7.2 77 13-106 4-82 (107)
47 3lwf_A LIN1550 protein, putati 96.5 0.0035 1.2E-07 47.1 5.1 63 25-100 26-88 (159)
48 1ub9_A Hypothetical protein PH 96.5 0.0019 6.6E-08 43.7 3.3 70 27-103 11-81 (100)
49 1ylf_A RRF2 family protein; st 96.5 0.003 1E-07 46.7 4.6 75 25-121 13-87 (149)
50 3t8r_A Staphylococcus aureus C 96.4 0.0026 9E-08 46.8 4.1 46 48-100 27-72 (143)
51 1on2_A Transcriptional regulat 96.4 0.0031 1E-07 45.8 4.4 50 48-106 21-70 (142)
52 2k02_A Ferrous iron transport 96.4 0.0029 9.8E-08 42.7 3.8 43 37-86 7-49 (87)
53 3f6v_A Possible transcriptiona 96.3 0.0018 6.2E-08 48.2 2.7 55 24-86 50-104 (151)
54 1r1t_A Transcriptional repress 96.3 0.0033 1.1E-07 45.0 3.9 51 28-86 42-92 (122)
55 1r7j_A Conserved hypothetical 96.3 0.0037 1.3E-07 42.7 4.0 47 50-106 21-67 (95)
56 1oyi_A Double-stranded RNA-bin 96.3 0.0032 1.1E-07 41.9 3.4 59 33-102 18-76 (82)
57 2wte_A CSA3; antiviral protein 96.2 0.0036 1.2E-07 50.3 3.7 63 33-106 153-215 (244)
58 2lnb_A Z-DNA-binding protein 1 96.1 0.0068 2.3E-07 39.5 4.0 55 34-99 21-75 (80)
59 3k69_A Putative transcription 96.1 0.012 4.2E-07 44.1 6.0 62 26-101 12-73 (162)
60 3df8_A Possible HXLR family tr 96.1 0.0026 8.7E-08 44.7 2.1 75 12-106 16-93 (111)
61 3r0a_A Putative transcriptiona 96.0 0.0052 1.8E-07 43.9 3.7 47 34-86 28-75 (123)
62 3fm5_A Transcriptional regulat 96.0 0.021 7E-07 41.5 6.9 47 34-86 41-87 (150)
63 2hr3_A Probable transcriptiona 96.0 0.011 3.9E-07 42.6 5.4 67 32-105 35-103 (147)
64 1xd7_A YWNA; structural genomi 95.9 0.0076 2.6E-07 44.3 4.3 73 25-121 8-80 (145)
65 2fu4_A Ferric uptake regulatio 95.8 0.0078 2.7E-07 39.6 3.6 49 34-87 19-72 (83)
66 1z7u_A Hypothetical protein EF 95.8 0.0064 2.2E-07 42.6 3.3 77 13-106 12-90 (112)
67 2fsw_A PG_0823 protein; alpha- 95.8 0.015 5.3E-07 40.2 5.3 78 12-106 14-93 (107)
68 2h09_A Transcriptional regulat 95.8 0.0082 2.8E-07 44.2 4.0 57 37-105 45-101 (155)
69 2lkp_A Transcriptional regulat 95.8 0.0095 3.2E-07 41.9 4.0 48 31-86 31-78 (119)
70 2x4h_A Hypothetical protein SS 95.8 0.0085 2.9E-07 43.2 3.9 48 48-105 30-77 (139)
71 2f2e_A PA1607; transcription f 95.7 0.0097 3.3E-07 43.8 4.2 55 48-106 36-90 (146)
72 3vc1_A Geranyl diphosphate 2-C 95.7 0.019 6.6E-07 47.1 6.3 59 150-209 75-136 (312)
73 3bdd_A Regulatory protein MARR 95.6 0.02 6.7E-07 40.9 5.3 66 34-106 33-99 (142)
74 1sfx_A Conserved hypothetical 95.6 0.013 4.4E-07 39.9 4.1 47 33-86 21-67 (109)
75 3k0l_A Repressor protein; heli 95.5 0.021 7.2E-07 42.1 5.4 64 35-105 49-113 (162)
76 3bja_A Transcriptional regulat 95.5 0.013 4.3E-07 41.8 4.0 47 33-86 34-80 (139)
77 2zkz_A Transcriptional repress 95.5 0.037 1.3E-06 37.7 6.2 50 29-86 24-73 (99)
78 1tbx_A ORF F-93, hypothetical 95.5 0.0071 2.4E-07 41.1 2.5 64 34-106 10-77 (99)
79 1jg1_A PIMT;, protein-L-isoasp 95.5 0.0068 2.3E-07 47.7 2.6 31 178-209 80-110 (235)
80 3g3z_A NMB1585, transcriptiona 95.4 0.015 5E-07 42.0 4.1 66 33-105 32-98 (145)
81 1yyv_A Putative transcriptiona 95.4 0.0082 2.8E-07 43.4 2.6 55 48-106 47-103 (131)
82 3dli_A Methyltransferase; PSI- 95.4 0.013 4.3E-07 46.1 3.9 31 179-209 30-60 (240)
83 3hsr_A HTH-type transcriptiona 95.3 0.038 1.3E-06 39.6 6.2 63 37-106 41-104 (140)
84 3bpv_A Transcriptional regulat 95.3 0.013 4.4E-07 41.8 3.5 46 34-86 31-76 (138)
85 3bro_A Transcriptional regulat 95.3 0.015 5.2E-07 41.5 3.9 67 34-105 36-103 (141)
86 2nnn_A Probable transcriptiona 95.3 0.014 4.7E-07 41.7 3.6 47 33-86 39-85 (140)
87 3nrv_A Putative transcriptiona 95.3 0.014 4.9E-07 42.2 3.7 47 33-86 41-87 (148)
88 2a61_A Transcriptional regulat 95.3 0.014 4.6E-07 42.0 3.5 66 33-105 34-100 (145)
89 1s3j_A YUSO protein; structura 95.3 0.033 1.1E-06 40.4 5.7 45 35-86 40-84 (155)
90 2bv6_A MGRA, HTH-type transcri 95.2 0.014 4.6E-07 42.0 3.4 46 34-86 39-84 (142)
91 3oop_A LIN2960 protein; protei 95.2 0.013 4.3E-07 42.3 3.2 66 33-105 38-104 (143)
92 3bj6_A Transcriptional regulat 95.2 0.013 4.5E-07 42.5 3.3 46 34-86 42-87 (152)
93 2qvo_A Uncharacterized protein 95.2 0.0086 2.9E-07 40.5 2.0 49 49-106 30-81 (95)
94 1jgs_A Multiple antibiotic res 95.1 0.017 5.9E-07 41.1 3.8 65 34-105 36-101 (138)
95 3bkw_A MLL3908 protein, S-aden 95.1 0.015 5E-07 45.4 3.6 29 180-209 34-62 (243)
96 2fa5_A Transcriptional regulat 95.1 0.017 5.8E-07 42.4 3.7 46 34-86 51-96 (162)
97 1q1h_A TFE, transcription fact 95.1 0.016 5.4E-07 40.2 3.3 46 35-86 21-66 (110)
98 3ou2_A SAM-dependent methyltra 95.1 0.019 6.5E-07 43.9 4.1 31 179-209 35-65 (218)
99 2rdp_A Putative transcriptiona 95.1 0.083 2.8E-06 38.0 7.4 46 34-86 44-89 (150)
100 2pg4_A Uncharacterized protein 95.1 0.01 3.4E-07 40.1 2.1 63 37-106 20-83 (95)
101 1xtp_A LMAJ004091AAA; SGPP, st 95.1 0.011 3.8E-07 46.5 2.7 30 179-209 83-112 (254)
102 2pex_A Transcriptional regulat 95.0 0.015 5.1E-07 42.4 3.2 67 34-107 49-116 (153)
103 3boq_A Transcriptional regulat 94.9 0.018 6.2E-07 42.2 3.4 47 34-86 49-95 (160)
104 3cdh_A Transcriptional regulat 94.9 0.089 3E-06 38.2 7.2 64 35-105 46-110 (155)
105 2fbh_A Transcriptional regulat 94.9 0.024 8.2E-07 40.7 4.0 45 35-86 40-85 (146)
106 2nyx_A Probable transcriptiona 94.8 0.074 2.5E-06 39.4 6.7 66 34-106 47-113 (168)
107 1bja_A Transcription regulator 94.8 0.029 1E-06 38.3 3.9 60 34-106 18-78 (95)
108 3bus_A REBM, methyltransferase 94.8 0.027 9.3E-07 44.8 4.4 30 179-209 51-80 (273)
109 3tgn_A ADC operon repressor AD 94.8 0.029 9.8E-07 40.4 4.1 65 33-105 39-104 (146)
110 3deu_A Transcriptional regulat 94.8 0.024 8.2E-07 42.2 3.8 66 34-105 55-121 (166)
111 3f3x_A Transcriptional regulat 94.8 0.018 6.1E-07 41.5 3.0 64 33-106 38-104 (144)
112 2obp_A Putative DNA-binding pr 94.8 0.024 8.2E-07 38.8 3.4 53 48-105 35-87 (96)
113 2cfx_A HTH-type transcriptiona 94.7 0.031 1.1E-06 40.7 4.2 47 33-86 6-52 (144)
114 2eth_A Transcriptional regulat 94.7 0.032 1.1E-06 40.7 4.3 47 33-86 45-91 (154)
115 1lj9_A Transcriptional regulat 94.7 0.021 7E-07 41.0 3.2 45 35-86 32-76 (144)
116 3s2w_A Transcriptional regulat 94.7 0.021 7.3E-07 41.9 3.3 63 36-105 54-117 (159)
117 2gxg_A 146AA long hypothetical 94.7 0.031 1.1E-06 40.1 4.1 45 34-86 39-83 (146)
118 3e6m_A MARR family transcripti 94.7 0.068 2.3E-06 39.2 6.1 65 34-105 55-120 (161)
119 2qww_A Transcriptional regulat 94.7 0.12 4.2E-06 37.3 7.4 65 34-105 43-110 (154)
120 2w25_A Probable transcriptiona 94.7 0.033 1.1E-06 40.7 4.3 47 33-86 8-54 (150)
121 2fbi_A Probable transcriptiona 94.6 0.019 6.7E-07 40.9 2.9 47 33-86 37-83 (142)
122 1z91_A Organic hydroperoxide r 94.6 0.013 4.6E-07 42.2 2.0 68 33-107 41-109 (147)
123 3cjn_A Transcriptional regulat 94.6 0.022 7.5E-07 41.9 3.1 46 34-86 54-99 (162)
124 4hbl_A Transcriptional regulat 94.6 0.018 6.2E-07 41.9 2.6 65 34-105 43-108 (149)
125 4g6q_A Putative uncharacterize 94.6 0.1 3.5E-06 39.7 7.0 72 27-106 18-93 (182)
126 3eco_A MEPR; mutlidrug efflux 94.6 0.028 9.6E-07 40.1 3.6 67 34-105 33-100 (139)
127 3hrs_A Metalloregulator SCAR; 94.6 0.029 9.8E-07 43.9 3.8 50 48-106 19-68 (214)
128 2p4w_A Transcriptional regulat 94.5 0.036 1.2E-06 43.1 4.3 52 27-86 10-61 (202)
129 3kp7_A Transcriptional regulat 94.5 0.19 6.5E-06 36.2 8.1 43 35-85 41-83 (151)
130 1p6r_A Penicillinase repressor 94.5 0.024 8.2E-07 37.1 2.8 50 34-86 11-60 (82)
131 3dlc_A Putative S-adenosyl-L-m 94.5 0.019 6.4E-07 43.8 2.6 29 179-209 34-62 (219)
132 3g5l_A Putative S-adenosylmeth 94.5 0.029 9.9E-07 44.2 3.8 29 180-209 35-63 (253)
133 2zfu_A Nucleomethylin, cerebra 94.5 0.034 1.2E-06 42.7 4.1 29 180-208 57-85 (215)
134 3iv6_A Putative Zn-dependent a 94.4 0.021 7.3E-07 46.2 2.9 31 178-209 34-64 (261)
135 2p5v_A Transcriptional regulat 94.4 0.04 1.4E-06 40.9 4.3 47 33-86 11-57 (162)
136 2pn6_A ST1022, 150AA long hypo 94.4 0.029 1E-06 41.0 3.4 47 33-86 4-50 (150)
137 3ofk_A Nodulation protein S; N 94.4 0.0057 2E-07 47.1 -0.5 22 188-209 49-70 (216)
138 4gek_A TRNA (CMO5U34)-methyltr 94.4 0.055 1.9E-06 43.5 5.2 28 180-209 62-89 (261)
139 4aik_A Transcriptional regulat 94.4 0.069 2.4E-06 39.1 5.4 65 36-106 35-100 (151)
140 3hem_A Cyclopropane-fatty-acyl 94.3 0.037 1.3E-06 45.0 4.3 30 179-209 62-91 (302)
141 3cgg_A SAM-dependent methyltra 94.3 0.022 7.5E-07 42.5 2.5 28 180-209 38-65 (195)
142 2o57_A Putative sarcosine dime 94.3 0.035 1.2E-06 44.9 3.9 30 179-209 68-101 (297)
143 1dus_A MJ0882; hypothetical pr 94.2 0.044 1.5E-06 40.8 4.1 30 179-209 42-71 (194)
144 3bkx_A SAM-dependent methyltra 94.2 0.046 1.6E-06 43.6 4.4 29 180-209 34-62 (275)
145 2d1h_A ST1889, 109AA long hypo 94.2 0.035 1.2E-06 37.7 3.2 35 48-86 35-69 (109)
146 3ujc_A Phosphoethanolamine N-m 94.1 0.026 8.9E-07 44.5 2.8 30 179-209 45-74 (266)
147 2dbb_A Putative HTH-type trans 94.1 0.045 1.5E-06 40.0 3.9 47 33-86 10-56 (151)
148 3u2r_A Regulatory protein MARR 94.1 0.031 1E-06 41.5 3.0 66 34-106 48-116 (168)
149 2cg4_A Regulatory protein ASNC 94.1 0.047 1.6E-06 40.0 3.9 47 33-86 9-55 (152)
150 3pfg_A N-methyltransferase; N, 94.0 0.052 1.8E-06 43.0 4.4 22 189-210 49-70 (263)
151 1yb2_A Hypothetical protein TA 94.0 0.019 6.5E-07 46.3 1.7 29 180-209 101-129 (275)
152 1uly_A Hypothetical protein PH 94.0 0.065 2.2E-06 41.2 4.7 51 28-86 16-66 (192)
153 2qlz_A Transcription factor PF 93.9 0.011 3.8E-07 47.1 0.3 52 26-85 6-57 (232)
154 4e2x_A TCAB9; kijanose, tetron 93.9 0.025 8.4E-07 48.3 2.5 32 177-209 95-126 (416)
155 2cyy_A Putative HTH-type trans 93.9 0.04 1.4E-06 40.4 3.3 47 33-86 8-54 (151)
156 2frh_A SARA, staphylococcal ac 93.9 0.027 9.1E-07 40.1 2.2 67 35-106 40-107 (127)
157 2ia0_A Putative HTH-type trans 93.9 0.059 2E-06 40.6 4.3 47 33-86 18-64 (171)
158 4htf_A S-adenosylmethionine-de 93.9 0.036 1.2E-06 44.6 3.2 28 180-209 60-87 (285)
159 1ku9_A Hypothetical protein MJ 93.8 0.045 1.5E-06 39.3 3.4 44 37-86 31-74 (152)
160 3e05_A Precorrin-6Y C5,15-meth 93.8 0.046 1.6E-06 41.6 3.6 29 180-209 31-59 (204)
161 1j5y_A Transcriptional regulat 93.8 0.079 2.7E-06 40.4 4.9 59 32-102 21-80 (187)
162 1kpg_A CFA synthase;, cyclopro 93.8 0.063 2.2E-06 43.1 4.6 30 179-209 54-83 (287)
163 1okr_A MECI, methicillin resis 93.8 0.026 8.8E-07 39.6 2.0 46 34-86 12-61 (123)
164 2fk8_A Methoxy mycolic acid sy 93.7 0.055 1.9E-06 44.3 4.1 30 179-209 80-109 (318)
165 3dtn_A Putative methyltransfer 93.7 0.06 2.1E-06 41.7 4.1 30 180-209 34-63 (234)
166 1i9g_A Hypothetical protein RV 93.6 0.026 8.9E-07 45.3 2.0 30 179-209 89-118 (280)
167 2o03_A Probable zinc uptake re 93.6 0.074 2.5E-06 38.2 4.2 60 32-98 11-75 (131)
168 1i1g_A Transcriptional regulat 93.6 0.05 1.7E-06 39.2 3.3 46 34-86 6-51 (141)
169 2fxa_A Protease production reg 93.6 0.036 1.2E-06 43.0 2.7 65 35-106 51-116 (207)
170 2y1w_A Histone-arginine methyl 93.6 0.041 1.4E-06 46.1 3.2 29 180-209 41-69 (348)
171 4fx0_A Probable transcriptiona 93.6 0.035 1.2E-06 40.6 2.4 35 48-86 51-85 (148)
172 2fbk_A Transcriptional regulat 93.5 0.032 1.1E-06 42.0 2.2 49 34-86 71-119 (181)
173 2e1c_A Putative HTH-type trans 93.5 0.059 2E-06 40.6 3.7 47 33-86 28-74 (171)
174 3k2z_A LEXA repressor; winged 93.5 0.07 2.4E-06 41.0 4.2 42 39-86 16-57 (196)
175 2dk5_A DNA-directed RNA polyme 93.5 0.062 2.1E-06 36.3 3.4 48 34-86 22-69 (91)
176 3jw4_A Transcriptional regulat 93.5 0.21 7.1E-06 35.9 6.5 47 35-86 44-90 (148)
177 2k4b_A Transcriptional regulat 93.5 0.034 1.1E-06 38.2 2.0 50 34-86 37-86 (99)
178 3b3j_A Histone-arginine methyl 93.5 0.042 1.4E-06 48.3 3.1 31 178-209 147-177 (480)
179 3i4p_A Transcriptional regulat 93.4 0.057 1.9E-06 40.2 3.4 47 33-86 4-50 (162)
180 3kkz_A Uncharacterized protein 93.3 0.073 2.5E-06 42.3 4.2 30 181-210 37-66 (267)
181 3e8s_A Putative SAM dependent 93.3 0.086 2.9E-06 40.3 4.4 30 180-210 43-72 (227)
182 1sfu_A 34L protein; protein/Z- 93.3 0.18 6.2E-06 32.7 5.2 42 38-86 21-62 (75)
183 1jsx_A Glucose-inhibited divis 93.3 0.02 6.9E-07 43.6 0.7 19 191-209 66-84 (207)
184 3nqo_A MARR-family transcripti 93.2 0.085 2.9E-06 40.0 4.1 70 32-106 41-111 (189)
185 3njr_A Precorrin-6Y methylase; 93.1 0.066 2.3E-06 41.2 3.5 28 181-209 47-74 (204)
186 3lbf_A Protein-L-isoaspartate 93.1 0.075 2.6E-06 40.5 3.8 29 180-209 68-96 (210)
187 3f4k_A Putative methyltransfer 93.1 0.066 2.3E-06 42.1 3.5 30 180-209 36-65 (257)
188 3g2m_A PCZA361.24; SAM-depende 93.1 0.059 2E-06 43.7 3.3 31 178-210 72-102 (299)
189 2fe3_A Peroxide operon regulat 93.1 0.097 3.3E-06 38.2 4.1 59 34-99 24-87 (145)
190 2aot_A HMT, histamine N-methyl 93.0 0.052 1.8E-06 44.0 2.8 18 190-207 52-69 (292)
191 3uzu_A Ribosomal RNA small sub 93.0 0.055 1.9E-06 44.1 2.9 29 180-209 33-61 (279)
192 2avd_A Catechol-O-methyltransf 92.9 0.051 1.7E-06 42.1 2.6 23 188-210 67-89 (229)
193 1vbf_A 231AA long hypothetical 92.8 0.08 2.7E-06 41.0 3.6 30 179-209 60-89 (231)
194 3u1d_A Uncharacterized protein 92.8 0.12 4E-06 38.3 4.2 69 33-106 30-105 (151)
195 2fyt_A Protein arginine N-meth 92.8 0.091 3.1E-06 43.9 4.1 29 180-209 55-83 (340)
196 3hnr_A Probable methyltransfer 92.7 0.04 1.4E-06 42.3 1.7 22 188-209 43-64 (220)
197 3e23_A Uncharacterized protein 92.7 0.074 2.5E-06 40.6 3.2 22 188-209 41-62 (211)
198 1wzn_A SAM-dependent methyltra 92.7 0.087 3E-06 41.3 3.7 30 179-209 31-60 (252)
199 3thr_A Glycine N-methyltransfe 92.7 0.031 1.1E-06 45.0 1.1 21 189-209 56-76 (293)
200 1u2z_A Histone-lysine N-methyl 92.7 0.082 2.8E-06 45.9 3.7 30 179-209 232-261 (433)
201 3fut_A Dimethyladenosine trans 92.6 0.068 2.3E-06 43.4 3.0 28 180-209 38-65 (271)
202 3orh_A Guanidinoacetate N-meth 92.5 0.08 2.7E-06 41.6 3.3 22 189-210 59-80 (236)
203 3fzg_A 16S rRNA methylase; met 92.5 0.065 2.2E-06 41.5 2.6 21 189-209 48-68 (200)
204 3ccf_A Cyclopropane-fatty-acyl 92.5 0.069 2.4E-06 42.8 2.9 30 179-209 47-76 (279)
205 1fbn_A MJ fibrillarin homologu 92.5 0.052 1.8E-06 42.3 2.1 26 183-209 68-93 (230)
206 2yxe_A Protein-L-isoaspartate 92.4 0.1 3.5E-06 39.9 3.7 29 180-209 68-96 (215)
207 3mb5_A SAM-dependent methyltra 92.4 0.096 3.3E-06 41.2 3.6 30 179-209 83-112 (255)
208 2hoe_A N-acetylglucosamine kin 92.4 0.12 4.2E-06 43.7 4.5 55 25-87 13-67 (380)
209 2ex4_A Adrenal gland protein A 92.4 0.088 3E-06 41.1 3.4 21 190-210 79-99 (241)
210 2h1r_A Dimethyladenosine trans 92.4 0.095 3.2E-06 43.0 3.6 31 179-210 32-62 (299)
211 2vn2_A DNAD, chromosome replic 92.4 0.091 3.1E-06 37.6 3.1 34 49-86 51-84 (128)
212 2esh_A Conserved hypothetical 92.4 0.28 9.6E-06 34.3 5.7 70 29-106 10-90 (118)
213 3gru_A Dimethyladenosine trans 92.4 0.1 3.5E-06 42.9 3.8 31 178-209 39-69 (295)
214 2fhp_A Methylase, putative; al 92.4 0.088 3E-06 39.1 3.2 22 188-209 42-63 (187)
215 2xvc_A ESCRT-III, SSO0910; cel 92.2 0.11 3.7E-06 31.7 2.8 46 34-85 12-57 (59)
216 1nt2_A Fibrillarin-like PRE-rR 92.1 0.074 2.5E-06 41.2 2.5 22 188-209 55-76 (210)
217 3uwp_A Histone-lysine N-methyl 91.9 0.15 5.2E-06 44.1 4.5 30 179-209 163-192 (438)
218 2p7i_A Hypothetical protein; p 91.9 0.084 2.9E-06 40.9 2.7 21 190-210 42-62 (250)
219 2pwy_A TRNA (adenine-N(1)-)-me 91.9 0.12 4.1E-06 40.5 3.6 30 179-209 86-115 (258)
220 1vlm_A SAM-dependent methyltra 91.9 0.22 7.4E-06 38.3 5.0 20 191-210 48-67 (219)
221 1yzh_A TRNA (guanine-N(7)-)-me 91.8 0.084 2.9E-06 40.6 2.5 20 190-209 41-60 (214)
222 1zx0_A Guanidinoacetate N-meth 91.8 0.11 3.8E-06 40.5 3.3 21 189-209 59-79 (236)
223 2yvl_A TRMI protein, hypotheti 91.8 0.13 4.4E-06 40.1 3.6 29 180-209 82-110 (248)
224 2g9w_A Conserved hypothetical 91.6 0.14 4.8E-06 36.8 3.4 48 33-86 10-61 (138)
225 2xig_A Ferric uptake regulatio 91.5 0.23 8E-06 36.4 4.6 62 31-99 26-92 (150)
226 1v4r_A Transcriptional repress 91.5 0.14 4.9E-06 34.8 3.2 52 28-86 15-68 (102)
227 1sd4_A Penicillinase repressor 91.5 0.12 4.2E-06 36.2 2.9 51 33-86 11-61 (126)
228 3m33_A Uncharacterized protein 91.5 0.15 5.3E-06 39.4 3.7 21 189-209 47-67 (226)
229 3tfw_A Putative O-methyltransf 91.4 0.027 9.3E-07 44.7 -0.7 22 189-210 62-83 (248)
230 3ckk_A TRNA (guanine-N(7)-)-me 91.3 0.082 2.8E-06 41.7 2.0 21 189-209 45-65 (235)
231 2oxt_A Nucleoside-2'-O-methylt 91.3 0.19 6.6E-06 40.5 4.2 30 180-210 65-94 (265)
232 1g8a_A Fibrillarin-like PRE-rR 91.3 0.083 2.8E-06 40.9 2.0 22 188-209 71-92 (227)
233 2ipx_A RRNA 2'-O-methyltransfe 91.2 0.062 2.1E-06 41.9 1.2 22 188-209 75-96 (233)
234 2wa2_A Non-structural protein 91.2 0.18 6.3E-06 40.8 4.1 30 180-210 73-102 (276)
235 3g07_A 7SK snRNA methylphospha 91.2 0.081 2.8E-06 43.0 1.9 22 188-209 44-65 (292)
236 2yu3_A DNA-directed RNA polyme 91.1 0.16 5.3E-06 34.6 3.0 49 33-86 38-86 (95)
237 3lcc_A Putative methyl chlorid 91.1 0.15 5E-06 39.6 3.3 27 181-209 59-85 (235)
238 1o9g_A RRNA methyltransferase; 91.1 0.14 4.8E-06 40.3 3.2 29 180-209 42-70 (250)
239 1ws6_A Methyltransferase; stru 91.0 0.1 3.4E-06 38.1 2.2 20 190-209 41-60 (171)
240 1dl5_A Protein-L-isoaspartate 91.0 0.16 5.6E-06 41.7 3.6 29 180-209 66-94 (317)
241 3cta_A Riboflavin kinase; stru 91.0 0.13 4.5E-06 40.3 2.9 53 48-106 26-78 (230)
242 1o54_A SAM-dependent O-methylt 90.9 0.18 6E-06 40.5 3.6 30 179-209 102-131 (277)
243 1jhg_A Trp operon repressor; c 90.9 0.25 8.5E-06 34.0 3.8 41 31-79 44-84 (101)
244 3ggd_A SAM-dependent methyltra 90.8 0.17 5.9E-06 39.4 3.5 22 188-209 54-75 (245)
245 4b8x_A SCO5413, possible MARR- 90.6 0.11 3.7E-06 37.8 2.0 36 48-87 50-85 (147)
246 3tma_A Methyltransferase; thum 90.6 0.2 6.8E-06 41.8 3.8 31 178-209 192-222 (354)
247 3lpm_A Putative methyltransfer 90.6 0.2 6.7E-06 39.8 3.6 23 188-210 46-69 (259)
248 1z6r_A MLC protein; transcript 90.6 0.22 7.4E-06 42.4 4.1 51 29-86 13-63 (406)
249 3m70_A Tellurite resistance pr 90.5 0.088 3E-06 42.3 1.5 21 189-209 119-139 (286)
250 2qe6_A Uncharacterized protein 90.5 0.2 6.9E-06 40.4 3.7 20 189-208 76-98 (274)
251 1fx7_A Iron-dependent represso 90.4 0.14 4.7E-06 40.3 2.5 48 50-106 25-72 (230)
252 3i71_A Ethanolamine utilizatio 90.4 0.77 2.6E-05 28.0 5.2 50 40-101 11-60 (68)
253 2nxc_A L11 mtase, ribosomal pr 90.3 0.15 5.2E-06 40.5 2.8 21 189-209 119-139 (254)
254 3adn_A Spermidine synthase; am 90.3 0.16 5.4E-06 41.6 2.9 22 189-210 82-103 (294)
255 2vdv_E TRNA (guanine-N(7)-)-me 90.2 0.1 3.5E-06 41.1 1.6 22 188-209 47-68 (246)
256 3p9n_A Possible methyltransfer 90.1 0.12 4.2E-06 38.7 2.0 20 190-209 44-63 (189)
257 3tqn_A Transcriptional regulat 90.1 0.3 1E-05 33.9 3.9 35 48-86 31-66 (113)
258 3mwm_A ZUR, putative metal upt 90.1 0.24 8.4E-06 35.8 3.5 65 32-99 14-79 (139)
259 3q7e_A Protein arginine N-meth 90.0 0.11 3.8E-06 43.5 1.8 20 190-209 66-85 (349)
260 3hp7_A Hemolysin, putative; st 90.0 0.26 8.8E-06 40.4 3.9 30 179-209 74-104 (291)
261 4dcm_A Ribosomal RNA large sub 90.0 0.21 7.1E-06 42.3 3.5 29 180-209 213-241 (375)
262 1nv8_A HEMK protein; class I a 90.0 0.099 3.4E-06 42.5 1.4 20 190-209 123-142 (284)
263 2pjp_A Selenocysteine-specific 90.0 0.18 6.1E-06 35.6 2.6 51 36-99 11-61 (121)
264 3l8d_A Methyltransferase; stru 89.9 0.14 4.8E-06 39.7 2.2 21 189-209 52-72 (242)
265 1cf7_A Protein (transcription 89.9 0.26 8.8E-06 32.1 3.1 36 48-86 29-64 (76)
266 3bzb_A Uncharacterized protein 89.9 0.17 5.8E-06 40.9 2.7 21 189-209 78-98 (281)
267 2a14_A Indolethylamine N-methy 89.8 0.11 3.9E-06 41.3 1.7 20 189-208 54-73 (263)
268 3grz_A L11 mtase, ribosomal pr 89.8 0.15 5.2E-06 38.6 2.2 21 189-209 59-79 (205)
269 3r0q_C Probable protein argini 89.7 0.37 1.3E-05 40.6 4.9 22 188-209 61-82 (376)
270 3h2b_A SAM-dependent methyltra 89.7 0.12 4.3E-06 39.0 1.7 19 191-209 42-60 (203)
271 2p41_A Type II methyltransfera 89.7 0.16 5.6E-06 41.8 2.5 23 188-210 80-102 (305)
272 2qlz_A Transcription factor PF 89.5 0.55 1.9E-05 37.2 5.4 52 35-99 168-219 (232)
273 2avn_A Ubiquinone/menaquinone 89.4 0.19 6.6E-06 39.7 2.7 21 190-210 54-74 (260)
274 2b25_A Hypothetical protein; s 89.4 0.23 7.7E-06 41.1 3.2 29 180-209 96-124 (336)
275 3c3p_A Methyltransferase; NP_9 89.3 0.2 7E-06 38.1 2.7 21 190-210 56-76 (210)
276 2ek5_A Predicted transcription 89.3 0.53 1.8E-05 33.6 4.7 35 48-86 26-61 (129)
277 2pxx_A Uncharacterized protein 89.2 0.14 4.7E-06 38.8 1.6 21 189-209 41-61 (215)
278 2vxz_A Pyrsv_GP04; viral prote 89.2 0.3 1E-05 35.9 3.2 45 34-86 13-57 (165)
279 2b3t_A Protein methyltransfera 89.1 0.4 1.4E-05 38.3 4.4 28 180-209 101-128 (276)
280 1wy7_A Hypothetical protein PH 89.1 0.16 5.6E-06 38.4 2.0 21 189-209 48-68 (207)
281 2ift_A Putative methylase HI07 89.1 0.15 5.2E-06 38.9 1.8 19 191-209 54-72 (201)
282 2pjd_A Ribosomal RNA small sub 89.0 0.17 5.8E-06 42.1 2.2 30 179-209 186-215 (343)
283 4df3_A Fibrillarin-like rRNA/T 89.0 0.14 4.8E-06 40.7 1.6 25 184-209 72-96 (233)
284 3tr6_A O-methyltransferase; ce 89.0 0.22 7.5E-06 38.3 2.7 21 190-210 64-84 (225)
285 2qq9_A Diphtheria toxin repres 89.0 0.32 1.1E-05 38.1 3.6 49 49-106 24-72 (226)
286 1xdz_A Methyltransferase GIDB; 88.9 0.14 4.7E-06 40.2 1.5 22 188-209 68-89 (240)
287 3duw_A OMT, O-methyltransferas 88.9 0.22 7.6E-06 38.2 2.7 22 189-210 57-78 (223)
288 3ntv_A MW1564 protein; rossman 88.9 0.23 7.8E-06 38.7 2.8 22 189-210 70-91 (232)
289 3bxo_A N,N-dimethyltransferase 88.9 0.18 6.2E-06 38.9 2.1 21 189-209 39-59 (239)
290 4esf_A PADR-like transcription 88.9 0.72 2.5E-05 32.3 5.1 70 28-105 7-85 (117)
291 1bia_A BIRA bifunctional prote 88.8 0.48 1.6E-05 39.2 4.7 56 34-100 7-62 (321)
292 3u81_A Catechol O-methyltransf 88.8 0.23 8E-06 38.2 2.7 21 190-210 58-78 (221)
293 1ne2_A Hypothetical protein TA 88.7 0.16 5.6E-06 38.4 1.7 22 188-209 49-70 (200)
294 3neu_A LIN1836 protein; struct 88.7 0.59 2E-05 33.1 4.6 43 48-98 35-78 (125)
295 3g89_A Ribosomal RNA small sub 88.6 0.21 7.3E-06 39.7 2.4 22 188-209 78-99 (249)
296 2gb4_A Thiopurine S-methyltran 88.6 0.16 5.5E-06 40.5 1.7 21 189-209 67-87 (252)
297 3gdh_A Trimethylguanosine synt 88.6 0.17 5.7E-06 39.4 1.8 20 190-209 78-97 (241)
298 3by6_A Predicted transcription 88.6 0.39 1.3E-05 34.1 3.5 35 48-86 33-68 (126)
299 1ri5_A MRNA capping enzyme; me 88.5 0.31 1.1E-05 38.9 3.4 21 189-209 63-83 (298)
300 1iy9_A Spermidine synthase; ro 88.5 0.25 8.4E-06 39.9 2.7 21 190-210 75-95 (275)
301 1r18_A Protein-L-isoaspartate( 88.4 0.38 1.3E-05 37.1 3.7 22 188-209 82-103 (227)
302 2fpo_A Methylase YHHF; structu 88.2 0.19 6.4E-06 38.4 1.8 19 191-209 55-73 (202)
303 2p8t_A Hypothetical protein PH 88.1 0.3 1E-05 37.8 2.8 47 48-104 29-75 (200)
304 3f8b_A Transcriptional regulat 88.1 0.95 3.3E-05 31.5 5.3 71 27-105 7-88 (116)
305 1xma_A Predicted transcription 88.0 0.34 1.2E-05 35.4 2.9 66 32-105 41-117 (145)
306 3elk_A Putative transcriptiona 87.9 0.59 2E-05 32.8 4.1 71 28-106 10-89 (117)
307 2v79_A DNA replication protein 87.9 0.3 1E-05 35.4 2.6 35 48-86 50-84 (135)
308 3bwc_A Spermidine synthase; SA 87.8 0.27 9.1E-06 40.3 2.6 22 189-210 94-115 (304)
309 2b0l_A GTP-sensing transcripti 87.8 0.41 1.4E-05 32.7 3.1 35 48-86 41-76 (102)
310 2bm8_A Cephalosporin hydroxyla 87.8 0.22 7.6E-06 39.1 2.0 19 191-209 82-100 (236)
311 3evz_A Methyltransferase; NYSG 87.7 0.25 8.7E-06 38.0 2.3 22 188-209 53-75 (230)
312 2pbf_A Protein-L-isoaspartate 87.6 0.38 1.3E-05 37.0 3.2 22 188-209 78-99 (227)
313 2h00_A Methyltransferase 10 do 87.5 0.22 7.6E-06 39.1 1.9 20 190-209 65-84 (254)
314 1mjf_A Spermidine synthase; sp 87.5 0.28 9.7E-06 39.6 2.5 21 190-210 75-95 (281)
315 1uwv_A 23S rRNA (uracil-5-)-me 87.4 0.45 1.5E-05 41.0 3.9 30 180-210 277-306 (433)
316 3c3y_A Pfomt, O-methyltransfer 87.3 0.55 1.9E-05 36.7 4.0 21 189-209 69-89 (237)
317 1p4x_A Staphylococcal accessor 87.3 0.33 1.1E-05 38.8 2.7 66 35-105 161-227 (250)
318 1z05_A Transcriptional regulat 87.3 0.65 2.2E-05 39.8 4.8 51 29-86 36-86 (429)
319 1ixk_A Methyltransferase; open 87.2 0.28 9.6E-06 40.4 2.3 45 164-209 93-137 (315)
320 1xj5_A Spermidine synthase 1; 87.1 0.35 1.2E-05 40.4 2.9 23 188-210 118-140 (334)
321 3ldu_A Putative methylase; str 87.0 0.49 1.7E-05 40.2 3.8 31 178-209 184-214 (385)
322 4azs_A Methyltransferase WBDD; 87.0 0.24 8.3E-06 44.2 2.0 21 189-209 65-85 (569)
323 4ham_A LMO2241 protein; struct 86.9 0.55 1.9E-05 33.6 3.5 43 48-98 36-79 (134)
324 2i62_A Nicotinamide N-methyltr 86.9 0.42 1.4E-05 37.4 3.2 21 189-209 55-75 (265)
325 1inl_A Spermidine synthase; be 86.8 0.32 1.1E-05 39.7 2.5 21 190-210 90-110 (296)
326 1mzb_A Ferric uptake regulatio 86.8 0.54 1.8E-05 33.7 3.4 59 34-98 20-83 (136)
327 1hsj_A Fusion protein consisti 86.8 0.34 1.2E-05 41.9 2.8 65 36-105 408-473 (487)
328 2cmg_A Spermidine synthase; tr 86.7 0.35 1.2E-05 38.8 2.7 22 189-210 71-92 (262)
329 3lmm_A Uncharacterized protein 86.7 0.66 2.3E-05 41.7 4.7 57 34-103 432-493 (583)
330 3ocj_A Putative exported prote 86.7 0.31 1.1E-05 39.6 2.3 22 188-209 116-137 (305)
331 3rkx_A Biotin-[acetyl-COA-carb 86.6 0.82 2.8E-05 37.9 4.9 63 34-105 5-67 (323)
332 2o0m_A Transcriptional regulat 86.6 0.13 4.4E-06 43.1 0.0 60 34-106 22-81 (345)
333 2pt6_A Spermidine synthase; tr 86.6 0.33 1.1E-05 40.1 2.5 21 190-210 116-136 (321)
334 3dr5_A Putative O-methyltransf 86.5 0.49 1.7E-05 36.7 3.3 20 190-209 56-75 (221)
335 1i1n_A Protein-L-isoaspartate 86.4 0.32 1.1E-05 37.3 2.2 22 188-209 75-96 (226)
336 3k0b_A Predicted N6-adenine-sp 86.4 0.56 1.9E-05 40.0 3.9 31 178-209 190-220 (393)
337 3id6_C Fibrillarin-like rRNA/T 86.4 0.36 1.2E-05 38.2 2.5 22 188-209 74-95 (232)
338 1uir_A Polyamine aminopropyltr 86.4 0.37 1.2E-05 39.7 2.6 22 189-210 76-97 (314)
339 1yg2_A Gene activator APHA; vi 86.4 0.71 2.4E-05 34.7 4.1 62 34-103 4-76 (179)
340 2i7c_A Spermidine synthase; tr 86.3 0.37 1.3E-05 39.0 2.6 22 189-210 77-98 (283)
341 3maj_A DNA processing chain A; 86.3 0.36 1.2E-05 41.1 2.5 52 35-99 331-382 (382)
342 2o07_A Spermidine synthase; st 86.2 0.37 1.3E-05 39.5 2.6 23 188-210 93-115 (304)
343 2hnk_A SAM-dependent O-methylt 86.2 0.31 1E-05 38.0 2.0 21 189-209 59-79 (239)
344 3cbg_A O-methyltransferase; cy 86.1 0.42 1.4E-05 37.2 2.7 21 190-210 72-92 (232)
345 3r3h_A O-methyltransferase, SA 86.0 0.28 9.7E-06 38.7 1.7 20 190-209 60-79 (242)
346 2gpy_A O-methyltransferase; st 86.0 0.32 1.1E-05 37.7 2.0 20 190-209 54-73 (233)
347 4hc4_A Protein arginine N-meth 86.0 0.31 1.1E-05 41.5 2.0 18 191-208 84-101 (376)
348 3l7w_A Putative uncharacterize 85.7 0.53 1.8E-05 32.4 2.8 66 32-105 9-80 (108)
349 3gcz_A Polyprotein; flavivirus 85.4 0.77 2.6E-05 37.4 4.0 31 178-209 79-109 (282)
350 3c7j_A Transcriptional regulat 85.3 0.94 3.2E-05 35.6 4.5 36 47-86 47-82 (237)
351 1p91_A Ribosomal RNA large sub 85.2 0.33 1.1E-05 38.4 1.7 21 189-209 84-104 (269)
352 2b2c_A Spermidine synthase; be 85.1 0.48 1.6E-05 39.1 2.7 22 189-210 107-128 (314)
353 3eyi_A Z-DNA-binding protein 1 84.9 1.2 4.1E-05 28.2 3.8 47 34-86 12-58 (72)
354 1sui_A Caffeoyl-COA O-methyltr 84.8 0.39 1.3E-05 38.0 2.0 21 189-209 78-98 (247)
355 3ldg_A Putative uncharacterize 84.3 0.77 2.6E-05 39.0 3.8 32 177-209 182-213 (384)
356 2vdw_A Vaccinia virus capping 84.1 0.44 1.5E-05 39.0 2.1 18 190-207 48-65 (302)
357 3tm4_A TRNA (guanine N2-)-meth 84.1 0.5 1.7E-05 39.8 2.5 22 188-209 215-236 (373)
358 4gqb_A Protein arginine N-meth 84.1 0.68 2.3E-05 42.1 3.5 50 150-206 321-373 (637)
359 3evf_A RNA-directed RNA polyme 84.0 0.95 3.3E-05 36.7 3.9 29 180-209 65-93 (277)
360 2frn_A Hypothetical protein PH 84.0 0.39 1.3E-05 38.7 1.6 21 189-209 124-144 (278)
361 4fsd_A Arsenic methyltransfera 84.0 0.43 1.5E-05 40.2 2.0 20 190-209 83-102 (383)
362 3a27_A TYW2, uncharacterized p 83.7 0.4 1.4E-05 38.5 1.6 22 188-209 117-138 (272)
363 3hhh_A Transcriptional regulat 83.5 1.3 4.5E-05 30.9 4.1 69 29-105 10-87 (116)
364 1tc3_C Protein (TC3 transposas 83.4 0.77 2.6E-05 25.8 2.4 28 49-80 21-48 (51)
365 2g72_A Phenylethanolamine N-me 83.1 0.44 1.5E-05 38.2 1.6 17 190-206 71-87 (289)
366 3eyy_A Putative iron uptake re 83.1 0.97 3.3E-05 32.8 3.4 52 33-87 20-72 (145)
367 2w48_A Sorbitol operon regulat 83.1 0.89 3E-05 37.3 3.5 35 48-86 20-55 (315)
368 3htx_A HEN1; HEN1, small RNA m 82.9 0.64 2.2E-05 43.8 2.8 22 189-210 720-741 (950)
369 2w57_A Ferric uptake regulatio 82.5 0.77 2.6E-05 33.6 2.6 59 34-98 19-82 (150)
370 3sxy_A Transcriptional regulat 82.3 1.1 3.6E-05 34.6 3.6 37 46-86 32-68 (218)
371 3ua3_A Protein arginine N-meth 82.2 1.2 4.3E-05 40.9 4.4 50 150-206 376-425 (745)
372 3ajd_A Putative methyltransfer 82.2 0.41 1.4E-05 38.4 1.1 22 188-209 81-102 (274)
373 3frh_A 16S rRNA methylase; met 82.1 0.71 2.4E-05 37.0 2.5 21 188-208 103-123 (253)
374 3dmg_A Probable ribosomal RNA 81.6 0.51 1.8E-05 40.0 1.6 20 190-209 233-252 (381)
375 1hw1_A FADR, fatty acid metabo 81.4 1.4 4.8E-05 34.3 4.0 45 47-99 28-73 (239)
376 2r6z_A UPF0341 protein in RSP 81.2 0.6 2E-05 37.4 1.8 22 188-209 81-102 (258)
377 3ic7_A Putative transcriptiona 80.9 0.4 1.4E-05 34.0 0.6 44 48-99 33-77 (126)
378 3kor_A Possible Trp repressor; 80.8 3.6 0.00012 29.0 5.4 41 30-79 61-101 (119)
379 3dv8_A Transcriptional regulat 80.7 1.6 5.4E-05 32.9 4.0 34 49-86 169-202 (220)
380 2oz6_A Virulence factor regula 80.6 1.4 4.8E-05 32.9 3.6 34 49-86 164-197 (207)
381 4ets_A Ferric uptake regulatio 80.5 2 6.7E-05 31.8 4.3 63 34-99 35-100 (162)
382 3fpf_A Mtnas, putative unchara 80.4 3 0.0001 34.2 5.7 18 188-205 120-137 (298)
383 2zcw_A TTHA1359, transcription 80.2 1.5 5E-05 32.8 3.6 34 49-86 146-179 (202)
384 2k9s_A Arabinose operon regula 80.0 2.3 7.7E-05 28.7 4.2 44 38-85 9-52 (107)
385 3lsg_A Two-component response 79.8 2.2 7.4E-05 28.5 4.0 33 48-84 18-50 (103)
386 3lcv_B Sisomicin-gentamicin re 79.7 0.66 2.3E-05 37.7 1.5 21 189-209 131-151 (281)
387 2hs5_A Putative transcriptiona 79.5 1.8 6E-05 34.0 4.0 37 46-86 48-84 (239)
388 3gjy_A Spermidine synthase; AP 79.5 0.68 2.3E-05 38.4 1.6 19 191-209 90-108 (317)
389 3cuq_B Vacuolar protein-sortin 79.5 2.3 7.8E-05 33.2 4.5 36 48-87 167-202 (218)
390 3ryp_A Catabolite gene activat 79.4 1.6 5.5E-05 32.6 3.6 34 49-86 167-200 (210)
391 3e97_A Transcriptional regulat 79.4 1.8 6.2E-05 32.9 4.0 34 49-86 175-208 (231)
392 2p5k_A Arginine repressor; DNA 79.4 2 6.9E-05 25.9 3.5 36 38-83 11-51 (64)
393 1lva_A Selenocysteine-specific 79.1 2.3 7.7E-05 33.9 4.6 49 33-86 142-190 (258)
394 2gau_A Transcriptional regulat 79.0 1.9 6.6E-05 32.8 4.0 35 48-86 179-213 (232)
395 4ev0_A Transcription regulator 78.9 1.8 6.1E-05 32.5 3.7 34 49-86 163-196 (216)
396 3iwz_A CAP-like, catabolite ac 78.8 1.7 5.8E-05 33.0 3.6 34 49-86 187-220 (230)
397 4esb_A Transcriptional regulat 78.7 1.4 4.7E-05 30.7 2.8 63 35-105 12-83 (115)
398 3d0s_A Transcriptional regulat 78.6 2 6.9E-05 32.6 4.0 34 49-86 177-210 (227)
399 3la7_A Global nitrogen regulat 78.6 2.1 7.1E-05 33.1 4.1 34 49-86 193-226 (243)
400 2qfm_A Spermine synthase; sper 78.5 1.1 3.7E-05 37.9 2.5 22 189-210 187-208 (364)
401 1af7_A Chemotaxis receptor met 78.4 2.1 7.2E-05 34.5 4.2 13 191-203 106-118 (274)
402 3edp_A LIN2111 protein; APC883 78.2 2.5 8.5E-05 33.2 4.5 45 48-100 31-76 (236)
403 2wv0_A YVOA, HTH-type transcri 78.1 2.6 8.8E-05 33.2 4.6 44 48-99 32-76 (243)
404 1zyb_A Transcription regulator 78.1 2.1 7.1E-05 32.8 4.0 34 49-86 186-219 (232)
405 3bwg_A Uncharacterized HTH-typ 78.0 2.6 9E-05 33.0 4.6 45 48-100 27-72 (239)
406 3dkw_A DNR protein; CRP-FNR, H 77.9 1.8 6E-05 32.8 3.5 35 48-86 177-211 (227)
407 3b02_A Transcriptional regulat 77.5 1.5 5.2E-05 32.6 2.9 34 49-86 139-172 (195)
408 1p4x_A Staphylococcal accessor 77.4 1.3 4.6E-05 35.2 2.7 64 37-105 39-103 (250)
409 2oyr_A UPF0341 protein YHIQ; a 77.1 1.3 4.6E-05 35.4 2.6 22 188-209 84-107 (258)
410 3mn2_A Probable ARAC family tr 77.0 2.5 8.7E-05 28.4 3.8 34 48-85 17-50 (108)
411 1stz_A Heat-inducible transcri 76.9 2.4 8.1E-05 35.4 4.2 40 40-86 30-71 (338)
412 2igt_A SAM dependent methyltra 76.7 1.1 3.7E-05 37.2 2.0 20 190-209 153-172 (332)
413 3ke2_A Uncharacterized protein 76.5 4.6 0.00016 28.2 4.8 60 34-101 22-83 (117)
414 3oou_A LIN2118 protein; protei 76.5 2.8 9.7E-05 28.2 3.9 34 48-85 20-53 (108)
415 3ihu_A Transcriptional regulat 76.4 2.5 8.5E-05 32.6 4.0 37 46-86 36-72 (222)
416 3bt7_A TRNA (uracil-5-)-methyl 76.3 2.6 8.9E-05 35.2 4.3 19 191-209 214-232 (369)
417 3e6c_C CPRK, cyclic nucleotide 76.1 2.4 8.3E-05 32.8 3.9 34 49-86 177-210 (250)
418 2yxl_A PH0851 protein, 450AA l 76.1 1 3.5E-05 38.9 1.8 45 164-209 234-278 (450)
419 3frw_A Putative Trp repressor 75.9 2.8 9.4E-05 29.0 3.6 41 30-79 44-84 (107)
420 2di3_A Bacterial regulatory pr 75.8 2.6 8.9E-05 32.8 4.0 36 46-85 24-60 (239)
421 2zfw_A PEX; five alpha-helices 75.5 4.1 0.00014 29.7 4.7 62 37-106 49-121 (148)
422 2px2_A Genome polyprotein [con 75.3 2.8 9.7E-05 33.7 4.0 31 178-209 62-92 (269)
423 3ll7_A Putative methyltransfer 75.3 1.7 5.7E-05 37.4 2.8 21 189-209 92-112 (410)
424 3eet_A Putative GNTR-family tr 75.2 3.1 0.00011 33.4 4.3 46 48-101 51-97 (272)
425 2bgc_A PRFA; bacterial infecti 75.1 3.2 0.00011 31.9 4.3 34 49-86 169-203 (238)
426 3f8m_A GNTR-family protein tra 75.1 3.3 0.00011 32.7 4.4 45 48-101 34-79 (248)
427 3oio_A Transcriptional regulat 74.9 3.2 0.00011 28.2 3.8 43 38-85 13-55 (113)
428 2okc_A Type I restriction enzy 74.9 1.8 6.3E-05 37.2 3.1 29 180-209 162-190 (445)
429 3u5c_Z RP45, S31, YS23, 40S ri 74.7 3.1 0.00011 28.7 3.6 35 48-86 58-92 (108)
430 2fmy_A COOA, carbon monoxide o 74.4 2.6 8.8E-05 31.8 3.5 33 49-85 167-199 (220)
431 2dql_A PEX protein; circadian 74.3 4.3 0.00015 28.1 4.4 61 37-105 27-98 (115)
432 2jpc_A SSRB; DNA binding prote 74.2 2.1 7.1E-05 25.5 2.4 32 35-75 4-35 (61)
433 2xzm_8 RPS25E,; ribosome, tran 73.9 2.6 8.9E-05 30.5 3.1 35 48-86 62-96 (143)
434 2gqq_A Leucine-responsive regu 73.7 0.43 1.5E-05 35.3 -1.1 45 34-85 15-59 (163)
435 2f8l_A Hypothetical protein LM 73.7 1.1 3.8E-05 37.0 1.4 21 189-209 129-149 (344)
436 1ft9_A Carbon monoxide oxidati 73.6 2.5 8.5E-05 32.0 3.3 34 49-86 163-196 (222)
437 3eqx_A FIC domain containing t 73.2 1.6 5.4E-05 37.0 2.2 64 37-109 302-365 (373)
438 2yx1_A Hypothetical protein MJ 73.1 2 6.7E-05 35.6 2.7 19 189-207 194-212 (336)
439 3v97_A Ribosomal RNA large sub 73.0 2.7 9.3E-05 38.6 3.8 31 178-209 179-209 (703)
440 3kcc_A Catabolite gene activat 72.8 2.8 9.5E-05 32.8 3.5 34 49-86 217-250 (260)
441 3qph_A TRMB, A global transcri 72.4 0.3 1E-05 40.9 -2.5 47 33-86 19-65 (342)
442 2b78_A Hypothetical protein SM 72.4 1.4 5E-05 37.1 1.8 21 189-209 211-231 (385)
443 3lmm_A Uncharacterized protein 72.2 0.76 2.6E-05 41.3 0.0 44 36-86 520-563 (583)
444 2x48_A CAG38821; archeal virus 71.7 2.9 0.0001 24.3 2.6 23 49-75 31-53 (55)
445 2jjq_A Uncharacterized RNA met 71.6 1.7 5.9E-05 37.3 2.1 21 189-209 289-309 (425)
446 3k6r_A Putative transferase PH 71.4 1.4 4.9E-05 35.7 1.4 22 188-209 123-144 (278)
447 1u5t_A Appears to BE functiona 71.3 6 0.0002 31.2 5.0 36 48-87 180-215 (233)
448 2qc0_A Uncharacterized protein 70.7 1.9 6.6E-05 36.3 2.2 65 36-109 301-365 (373)
449 4dmg_A Putative uncharacterize 70.7 3.8 0.00013 34.8 4.0 21 189-209 213-233 (393)
450 1sqg_A SUN protein, FMU protei 70.6 1.1 3.9E-05 38.3 0.7 27 182-209 239-265 (429)
451 2as0_A Hypothetical protein PH 69.9 1.9 6.4E-05 36.4 1.9 20 190-209 217-236 (396)
452 2pi2_A Replication protein A 3 69.9 0.93 3.2E-05 36.6 0.0 60 33-100 208-268 (270)
453 1fse_A GERE; helix-turn-helix 69.8 3.6 0.00012 25.3 2.9 34 34-76 16-49 (74)
454 3c0k_A UPF0064 protein YCCW; P 69.4 1.8 6E-05 36.6 1.6 21 189-209 219-239 (396)
455 3mkl_A HTH-type transcriptiona 69.3 4.4 0.00015 27.8 3.5 36 37-77 12-47 (120)
456 2ijl_A AGR_C_4647P, molybdenum 69.1 3.1 0.00011 29.9 2.7 64 34-107 28-94 (135)
457 3pfi_A Holliday junction ATP-d 69.0 3.9 0.00013 33.2 3.6 56 37-103 268-324 (338)
458 2pij_A Prophage PFL 6 CRO; tra 69.0 4.7 0.00016 24.3 3.2 32 35-75 4-35 (67)
459 3m6w_A RRNA methylase; rRNA me 68.3 1.6 5.3E-05 38.2 1.1 22 188-209 99-120 (464)
460 3ulq_B Transcriptional regulat 67.9 4.3 0.00015 26.8 3.0 41 33-82 33-74 (90)
461 2k4m_A TR8_protein, UPF0146 pr 67.8 2.7 9.3E-05 30.9 2.1 21 189-209 34-55 (153)
462 2qen_A Walker-type ATPase; unk 67.5 20 0.0007 28.5 7.8 45 34-86 284-333 (350)
463 2gmg_A Hypothetical protein PF 67.4 2.8 9.7E-05 28.8 2.0 25 33-61 12-36 (105)
464 3eld_A Methyltransferase; flav 67.3 5.4 0.00019 32.6 4.1 29 180-209 72-100 (300)
465 2e1n_A PEX, period extender; c 67.3 5.4 0.00018 28.6 3.7 61 37-105 39-110 (138)
466 2zig_A TTHA0409, putative modi 66.6 3.6 0.00012 33.2 2.9 29 179-209 226-254 (297)
467 2ar0_A M.ecoki, type I restric 66.4 2.8 9.5E-05 37.2 2.3 22 188-209 167-188 (541)
468 3m4x_A NOL1/NOP2/SUN family pr 66.2 2.1 7.2E-05 37.2 1.5 44 165-209 81-124 (456)
469 1bl0_A Protein (multiple antib 66.2 4.7 0.00016 28.1 3.2 69 37-119 16-84 (129)
470 1t6s_A Conserved hypothetical 65.6 3.2 0.00011 30.9 2.2 42 35-86 97-138 (162)
471 1jko_C HIN recombinase, DNA-in 65.4 3.4 0.00012 23.2 1.9 23 49-75 21-43 (52)
472 1je8_A Nitrate/nitrite respons 65.4 4.9 0.00017 25.8 2.9 39 34-81 26-65 (82)
473 3cuq_A Vacuolar-sorting protei 65.3 6.4 0.00022 31.1 4.0 36 48-87 167-202 (234)
474 1wxx_A TT1595, hypothetical pr 65.2 2.4 8.1E-05 35.6 1.6 20 190-209 209-228 (382)
475 4a0z_A Transcription factor FA 64.9 4.4 0.00015 30.8 2.9 46 34-86 14-59 (190)
476 3p8z_A Mtase, non-structural p 64.9 6.6 0.00023 31.4 4.0 30 178-208 67-96 (267)
477 2ra5_A Putative transcriptiona 64.5 1.8 6.2E-05 34.2 0.7 44 48-99 38-82 (247)
478 3ri2_A Transcriptional regulat 64.5 7.3 0.00025 27.3 3.9 71 26-105 15-92 (123)
479 3lkz_A Non-structural protein 64.4 6.9 0.00024 32.2 4.1 29 179-208 84-112 (321)
480 3kfw_X Uncharacterized protein 64.1 7.5 0.00026 30.9 4.3 46 48-103 19-67 (247)
481 2elj_A Transcriptional adapter 64.1 11 0.00038 24.8 4.5 60 18-83 29-88 (88)
482 3b5i_A S-adenosyl-L-methionine 63.6 3.8 0.00013 34.6 2.6 20 190-209 52-71 (374)
483 1ku3_A Sigma factor SIGA; heli 63.5 5 0.00017 24.9 2.6 23 48-74 29-51 (73)
484 1uxc_A FRUR (1-57), fructose r 63.4 4.6 0.00016 25.0 2.3 22 50-75 1-22 (65)
485 2jn6_A Protein CGL2762, transp 63.0 5.6 0.00019 26.2 2.9 30 49-82 23-52 (97)
486 1p4w_A RCSB; solution structur 62.7 6.4 0.00022 26.5 3.2 41 33-82 38-79 (99)
487 1o5l_A Transcriptional regulat 62.3 1.6 5.5E-05 33.0 0.0 34 49-86 164-197 (213)
488 3l09_A Putative transcriptiona 62.2 5.6 0.00019 32.0 3.2 56 40-106 35-96 (266)
489 2xi8_A Putative transcription 60.9 7.4 0.00025 22.9 3.0 24 48-75 13-36 (66)
490 3c57_A Two component transcrip 60.9 7.2 0.00025 25.7 3.1 43 33-84 31-74 (95)
491 2frx_A Hypothetical protein YE 60.7 4 0.00014 35.6 2.2 20 190-209 117-136 (479)
492 3f2g_A Alkylmercury lyase; MER 60.1 9.6 0.00033 29.7 4.1 42 35-86 25-66 (220)
493 2z99_A Putative uncharacterize 60.1 7.8 0.00027 30.2 3.6 41 36-86 104-144 (219)
494 2b9e_A NOL1/NOP2/SUN domain fa 59.9 2.9 9.9E-05 34.3 1.2 22 188-209 100-121 (309)
495 3l9f_A Putative uncharacterize 59.2 8 0.00027 29.7 3.5 60 36-103 40-110 (204)
496 2p7v_B Sigma-70, RNA polymeras 58.8 6.6 0.00023 23.9 2.5 30 48-81 24-54 (68)
497 2l02_A Uncharacterized protein 58.4 14 0.00049 24.1 4.0 40 37-83 13-52 (82)
498 1x3u_A Transcriptional regulat 58.3 7.9 0.00027 24.1 2.9 34 33-75 20-53 (79)
499 2l0k_A Stage III sporulation p 58.3 5.5 0.00019 26.6 2.1 32 36-75 11-42 (93)
500 1tty_A Sigma-A, RNA polymerase 57.5 7.1 0.00024 25.2 2.6 23 48-74 37-59 (87)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=8.4e-34 Score=243.95 Aligned_cols=201 Identities=46% Similarity=0.811 Sum_probs=176.6
Q ss_pred cchhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcC-CCCCCcc---cHHHHHHHHhcc
Q 036188 5 VDGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLT-KNKDAPM---MLDRILRLLASY 80 (210)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~-~~~~~~~---~l~rlLr~L~~~ 80 (210)
+..+..+++..+++++++++.+++|++|++|||||.|++.| ++|+|++|||+++++ + +|+ .|+||||+|++.
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~ 88 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASY 88 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhC
Confidence 66778899999999999999999999999999999999853 259999999999994 3 555 999999999999
Q ss_pred cceeeecc---CCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhc
Q 036188 81 SVVECSLD---ASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAG 157 (210)
Q Consensus 81 gl~~~~~~---~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~ 157 (210)
|+|++... ++..++.|++|+.++.|+.+..+.++++++.+...+.+++.|.+|++++++|.+||+.++|.++|+|+.
T Consensus 89 g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~ 168 (364)
T 3p9c_A 89 NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG 168 (364)
T ss_dssp TSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHT
T ss_pred CCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHH
Confidence 99998620 000147899999999887665335899998887777888999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 158 LNPRFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 158 ~~p~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
++|+..+.|+++|...+......+++.+++|++..+|||||||+|.++..++
T Consensus 169 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~ 220 (364)
T 3p9c_A 169 TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIA 220 (364)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHH
Confidence 9999999999999998888888899998768889999999999999999886
No 2
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.2e-33 Score=243.28 Aligned_cols=205 Identities=48% Similarity=0.798 Sum_probs=173.9
Q ss_pred cchhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhc-CCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccce
Q 036188 5 VDGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKA-GPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVV 83 (210)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~-g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~ 83 (210)
++.+..+++..+++++.+++.+++|++|++|||||.|++. |+++|+|++|||++++..++.+++.|+|+||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 4456788999999999999999999999999999999986 545689999999999832121234999999999999999
Q ss_pred eeecc---CCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCc
Q 036188 84 ECSLD---ASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNP 160 (210)
Q Consensus 84 ~~~~~---~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p 160 (210)
++... ++..++.|++|+.++.|+.+..+.++++++.+..++.+++.|.+|++++++|.++|+.++|.++|+|+.++|
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCH
Confidence 98510 000147899999999887654335899998887777888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 161 RFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 161 ~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..++
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~ 222 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIV 222 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHH
Confidence 9999999999999888888889988768889999999999999999886
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=7.7e-33 Score=236.30 Aligned_cols=185 Identities=21% Similarity=0.190 Sum_probs=171.4
Q ss_pred cchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeecc
Q 036188 9 RDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLD 88 (210)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~ 88 (210)
..++...+++++.+++.+++|++|+++||||.|++ +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-- 88 (348)
T 3lst_A 19 RLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-- 88 (348)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec--
Confidence 45778889999999999999999999999999986 69999999999999 999999999999999999985
Q ss_pred CCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHH
Q 036188 89 ASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNA 168 (210)
Q Consensus 89 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~ 168 (210)
++.|++|+.|+.|.++++ .++.+++.+..++.+++.|.+|++++++|+++|+..+|.++|+|+.++|+..+.|++
T Consensus 89 ----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 163 (348)
T 3lst_A 89 ----DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYE 163 (348)
T ss_dssp ----TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHH
T ss_pred ----CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHH
Confidence 789999999998877665 478998887766667899999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 169 AMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 169 ~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+|...+....+.+++.++ |++..+|||||||+|.++..++
T Consensus 164 ~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~ 203 (348)
T 3lst_A 164 GMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVL 203 (348)
T ss_dssp HHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHH
T ss_pred HHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHH
Confidence 999999888889999998 9999999999999999998875
No 4
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.8e-32 Score=234.79 Aligned_cols=189 Identities=19% Similarity=0.338 Sum_probs=168.2
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 036188 11 QSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (210)
Q Consensus 11 ~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~ 90 (210)
++...|++++.||+.+++|++|++|||||.|++.+ +|+|++|||+++|+ +++.++|+||+|++.|+|++...
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~-- 78 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETR-- 78 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEecc--
Confidence 67778999999999999999999999999999865 79999999999999 99999999999999999986421
Q ss_pred Ccccceecccccc-ccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhC---CchhHhhccCchHHHHH
Q 036188 91 GARRLYSLNSVSK-YYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHG---VHIFEYAGLNPRFNKHF 166 (210)
Q Consensus 91 ~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g---~~~fe~l~~~p~~~~~f 166 (210)
...+.|++|+.+. +|.++++ .++.+++.+.. +..++.|.+|++++++|+++|..++| .++|+++.++|+....|
T Consensus 79 ~~~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 79 GGKAFYRNTELSSDYLTTVSP-TSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp TTEEEEEECHHHHHHHSTTST-TCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred CccceeeCCHHHHHHhhcCCc-hHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 1356899999987 5666666 58888887763 56788999999999999999999888 47999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 167 NAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 167 ~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+++|...+....+.+++.++ |++..+|||||||+|.++++|++
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~ 199 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMS 199 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHH
Confidence 99999999888899999998 99999999999999999998863
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.98 E-value=8.6e-32 Score=231.65 Aligned_cols=185 Identities=22% Similarity=0.345 Sum_probs=170.5
Q ss_pred chHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccC
Q 036188 10 DQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA 89 (210)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~ 89 (210)
.+...++++++.+++.+++|++++++||||.|++ +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~--- 104 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL--- 104 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC---
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe---
Confidence 4667789999999999999999999999999986 69999999999999 999999999999999999997
Q ss_pred CCcccc-eeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHH
Q 036188 90 SGARRL-YSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNA 168 (210)
Q Consensus 90 ~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~ 168 (210)
+++. |.+|+.++.|.++.+ .++.+++.+...+.+++.|.+|++++++|.++|...+|.++|+|+.++|+..+.|++
T Consensus 105 --~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 181 (369)
T 3gwz_A 105 --GHDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNR 181 (369)
T ss_dssp --SSTTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred --CCCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHH
Confidence 5788 999999998877665 478888888766667889999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 169 AMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 169 ~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+|...+....+.+++.++ |++..+|||||||+|.++..++
T Consensus 182 ~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~ 221 (369)
T 3gwz_A 182 AMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVL 221 (369)
T ss_dssp HHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHH
T ss_pred HHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHH
Confidence 999998888889999998 9999999999999999998876
No 6
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.97 E-value=1.5e-31 Score=228.99 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=172.6
Q ss_pred chhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 6 DGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
..++.++...+++++.+++.+++|++++++||||.|++.+ +|+|++|||+++|+ ++.+++.++|+||+|++.|+|++
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEE
Confidence 3678899999999999999999999999999999999853 59999999999999 33347799999999999999988
Q ss_pred ec----c-CCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcC--CchhhhhhCCchhHhhcc
Q 036188 86 SL----D-ASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEG--GIPFNRAHGVHIFEYAGL 158 (210)
Q Consensus 86 ~~----~-~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~f~~~~g~~~fe~l~~ 158 (210)
.. . ++..++.|++|+.++.|+++++ .++++++.+..++.+++.|.+|++++++| .++|+.++|.++|+|+.+
T Consensus 81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~ 159 (358)
T 1zg3_A 81 TIVKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNK 159 (358)
T ss_dssp EEECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTS
T ss_pred ecccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhc
Confidence 61 0 0001479999999998887776 58999998876677788999999999998 788999999999999999
Q ss_pred CchHHH--HHHHHHhhhhhhhHHHHHHhCC-CCCCCCeEEEecCCccHHHHhhh
Q 036188 159 NPRFNK--HFNAAMYNYTSLVMSNILESYK-GFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 159 ~p~~~~--~f~~~M~~~~~~~~~~~l~~~~-~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+|+..+ .|+++|...+.... .+++.|+ +|++..+|||||||+|.++..++
T Consensus 160 ~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~ 212 (358)
T 1zg3_A 160 DSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIH 212 (358)
T ss_dssp GGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHH
T ss_pred ChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHH
Confidence 999999 99999999887766 8888882 27888999999999999998875
No 7
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.97 E-value=2.1e-31 Score=227.67 Aligned_cols=198 Identities=25% Similarity=0.356 Sum_probs=173.8
Q ss_pred cccchhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccc
Q 036188 3 SIVDGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSV 82 (210)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl 82 (210)
+..++++.++...+++++.+++.+++|++++++|||+.|++.+ +|+|++|||+++++ +|.+++.++|+||+|++.|+
T Consensus 7 ~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gl 83 (352)
T 1fp2_A 7 GRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGF 83 (352)
T ss_dssp -CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTS
T ss_pred CCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCe
Confidence 3456789999999999999999999999999999999999854 59999999999999 22236789999999999999
Q ss_pred eeeeccCCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHh-cCCchhhhhhCCchhHhhccCch
Q 036188 83 VECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAIL-EGGIPFNRAHGVHIFEYAGLNPR 161 (210)
Q Consensus 83 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~f~~~~g~~~fe~l~~~p~ 161 (210)
|++.. .+++.|++|+.++.|+++++ .++++++.+..++.+++.|.+|+++++ +|+++|+.++|.++|+|+.++|+
T Consensus 84 l~~~~---~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 159 (352)
T 1fp2_A 84 FEIIT---KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPE 159 (352)
T ss_dssp EEEEE---SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHH
T ss_pred EEEec---CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChH
Confidence 99861 01589999999999987776 589999988767777889999999999 88999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhC--CCCCCCCeEEEecCCccHHHHhhh
Q 036188 162 FNKHFNAAMYNYTSLVMSNILESY--KGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 162 ~~~~f~~~M~~~~~~~~~~~l~~~--~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+.|+++|...+....+. ++.| + |++..+|||||||+|.++..++
T Consensus 160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~ 207 (352)
T 1fp2_A 160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIIC 207 (352)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHH
Confidence 9999999999988877667 8888 5 8888999999999999998875
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.97 E-value=5.3e-31 Score=223.21 Aligned_cols=180 Identities=21% Similarity=0.339 Sum_probs=165.1
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 036188 11 QSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (210)
Q Consensus 11 ~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~ 90 (210)
.+...+++++.+++.+++|++++++||||.|.+ +|.|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 577889999999999999999999999999976 69999999999999 999999999999999999997
Q ss_pred CcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHHHH
Q 036188 91 GARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAM 170 (210)
Q Consensus 91 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~~M 170 (210)
+++.|++|+.++.|. +++ .++++++.+..++.+ +.|.+|++++++|+++|+..+|.++|+++.++|+..+.|+++|
T Consensus 75 -~~~~y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 75 -TRDGYANTPTSHLLR-DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp -TTTEEEECHHHHTTS-SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCCeEecCHHHHHHh-CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 578999999999888 655 478999888766544 8999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 171 YNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+....+.+++.++ |++ .+|||||||+|.++..++
T Consensus 151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~ 186 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAIL 186 (334)
T ss_dssp -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHH
T ss_pred -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHH
Confidence 888877888999998 988 999999999999998875
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.97 E-value=1.4e-31 Score=226.89 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=164.2
Q ss_pred HHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCc
Q 036188 13 FAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGA 92 (210)
Q Consensus 13 ~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~ 92 (210)
...+++++.+++.+++|++|+++||||.|++ +|+|++|||+++|+ +++.++||||+|++.|++++. +
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~-----~ 72 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD-----G 72 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----T
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec-----C
Confidence 3457899999999999999999999999986 69999999999999 999999999999999999997 5
Q ss_pred ccceeccccccccccCCCCCChHHHHHHhcChhHH-HHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHHHHh
Q 036188 93 RRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVIL-ESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMY 171 (210)
Q Consensus 93 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~~M~ 171 (210)
++.|.+|+.++.|..+++ .++.+++.+...+..+ +.|.+|++++++|+++|+..+|.++|+|+.++|+..+.|+++|.
T Consensus 73 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 899999999998876665 4788888765444455 78999999999999999999998999999999999999999999
Q ss_pred hhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 172 NYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+....+.+++.++ |++..+|||||||+|.++..++
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~ 188 (332)
T 3i53_A 152 HHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALL 188 (332)
T ss_dssp HHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHH
T ss_pred HhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHH
Confidence 988877778888888 9999999999999999998875
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.97 E-value=1.8e-30 Score=223.55 Aligned_cols=204 Identities=36% Similarity=0.613 Sum_probs=158.5
Q ss_pred chhcchHHHHHH--HHHhhchHHHHHHHHHhhChhhHHhhcC-CCCCCCHHHHHHHhcC--CCCCCcccHHHHHHHHhcc
Q 036188 6 DGERDQSFAYAD--QLATGVVLPMAIQAVYELGIFEILDKAG-PGTKLSASDIAAQLLT--KNKDAPMMLDRILRLLASY 80 (210)
Q Consensus 6 ~~~~~~~~~~l~--~~~~~~~~~~al~~a~~lglfd~L~~~g-~~~~~t~~eLA~~~~~--~~~~~~~~l~rlLr~L~~~ 80 (210)
.++..++...++ +++.+++.+++|++|+++||||.|++.| +|+++|++|||+++++ ++|.+++.++|+||+|++.
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 345778888888 9999999999999999999999999753 1122999999999998 2333678999999999999
Q ss_pred cceeeeccCC-Cc--ccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcC-CchhhhhhCCchhHhh
Q 036188 81 SVVECSLDAS-GA--RRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEG-GIPFNRAHGVHIFEYA 156 (210)
Q Consensus 81 gl~~~~~~~~-~~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~f~~~~g~~~fe~l 156 (210)
|+|++....+ .+ ++.|++|+.++.|+++++..++++++.+..++.+++.|.+|++++++| ++||+.++|.++|+|+
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~ 175 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFM 175 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CC
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHH
Confidence 9999861000 01 469999999998887765237889988876777788999999999998 8899999999999999
Q ss_pred ccCchHHHHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 157 GLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 157 ~~~p~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..++
T Consensus 176 ~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~ 228 (372)
T 1fp1_D 176 GKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELII 228 (372)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHH
T ss_pred HhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHH
Confidence 99999999999999998888788889998658889999999999999998875
No 11
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.96 E-value=2.7e-29 Score=215.59 Aligned_cols=185 Identities=19% Similarity=0.254 Sum_probs=165.2
Q ss_pred chHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccC
Q 036188 10 DQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA 89 (210)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~ 89 (210)
.+....+++++.+++.+++|++++++|||+.|.. +|+|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~--- 82 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG--- 82 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---
Confidence 4556679999999999999999999999999965 69999999999999 999999999999999999986
Q ss_pred CCccc--ceeccccccccccCCCCCChHHHHHHhcChhHH-HHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHH
Q 036188 90 SGARR--LYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVIL-ESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHF 166 (210)
Q Consensus 90 ~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f 166 (210)
.++ .|.+|+.++.|..+++ .++++++.+...+..+ ..|.+|.+.+++|.++|...+|.++|+++..+|+..+.|
T Consensus 83 --~~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 159 (374)
T 1qzz_A 83 --EKQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSF 159 (374)
T ss_dssp --CC-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred --CCCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHH
Confidence 467 9999999999987766 4788888766444456 789999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 167 NAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 167 ~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+.+|...+....+.+++.++ +++..+|||||||+|.++..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~ 201 (374)
T 1qzz_A 160 DALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIA 201 (374)
T ss_dssp HHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHH
Confidence 99999888777788899998 8889999999999999998875
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.96 E-value=2.1e-29 Score=216.34 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=155.9
Q ss_pred cchhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhccccee
Q 036188 5 VDGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVE 84 (210)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~ 84 (210)
.|.++.++..++++++++++.+++|++++++||||.|++.+ +|+|++|||+++|+ +++.++||||+|++.|+|+
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~ 81 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTIL 81 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEE
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeE
Confidence 46678899999999999999999999999999999999844 69999999999999 9999999999999999998
Q ss_pred eeccCCCcccceeccccccccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhC--CchhHhhccCchH
Q 036188 85 CSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHG--VHIFEYAGLNPRF 162 (210)
Q Consensus 85 ~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g--~~~fe~l~~~p~~ 162 (210)
+. +++|++|+.|++|+.+++ ...++.+ ..+.+++.|.+|++++++|++++..++| .++|+++.++|+.
T Consensus 82 ~~------~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (363)
T 3dp7_A 82 LE------EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQ 151 (363)
T ss_dssp EE------TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHH
T ss_pred ec------CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHH
Confidence 85 789999999998887654 2223333 2356789999999999999999988888 6999999999998
Q ss_pred HH----HHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 163 NK----HFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 163 ~~----~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+ .|+.+|..... ..+++.+. ..+..+|||||||+|.++..++
T Consensus 152 ~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~ 198 (363)
T 3dp7_A 152 VQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCV 198 (363)
T ss_dssp HHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHH
Confidence 76 47777765432 23455544 4678999999999999998876
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.96 E-value=1.6e-28 Score=209.95 Aligned_cols=182 Identities=19% Similarity=0.244 Sum_probs=163.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCc
Q 036188 13 FAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGA 92 (210)
Q Consensus 13 ~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~ 92 (210)
..++++++.+++.+++|++++++|||+.|.. +|+|++|||+++++ +++.+.|+||+|++.|+|++. .
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~-----~ 86 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED-----A 86 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----E
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec-----C
Confidence 5678999999999999999999999999965 69999999999999 999999999999999999986 4
Q ss_pred ccceeccccccccccCCCCCChHHHHHHhcChh-HHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHHHHh
Q 036188 93 RRLYSLNSVSKYYVPNKDGVLLGPLIQIIQDKV-ILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMY 171 (210)
Q Consensus 93 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~~M~ 171 (210)
+|.|++|+.++.|+.+.+ .++.+++.+...+. .+..|.+|.+.+++|.++|+..+|.++|+++..+|+....|+..|.
T Consensus 87 ~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~ 165 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLA 165 (360)
T ss_dssp TTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHT
T ss_pred CCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHH
Confidence 789999999999987776 57888876654332 5678999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 172 NYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+....+.+++.++ +++..+|||||||+|.++..++
T Consensus 166 ~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~ 202 (360)
T 1tw3_A 166 CDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIA 202 (360)
T ss_dssp TTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHH
T ss_pred HHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHH
Confidence 888877788899998 9889999999999999998875
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.95 E-value=1.2e-27 Score=204.68 Aligned_cols=181 Identities=18% Similarity=0.282 Sum_probs=159.4
Q ss_pred cccchhcchHHHHHHHHHh-hchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhccc
Q 036188 3 SIVDGERDQSFAYADQLAT-GVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYS 81 (210)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~-~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~g 81 (210)
+..++++.++..++++++. +++.+++|++++++||||.|++ +|.|++|||+++|+ +++.++|+||+|++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g 92 (359)
T 1x19_A 21 MMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMR 92 (359)
T ss_dssp EECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred cCCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCC
Confidence 4567788899999999997 8999999999999999999987 69999999999999 9999999999999999
Q ss_pred ceeeeccCCCcccceecccc-ccccccCCCC--CChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhcc
Q 036188 82 VVECSLDASGARRLYSLNSV-SKYYVPNKDG--VLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGL 158 (210)
Q Consensus 82 l~~~~~~~~~~~~~y~~t~~-s~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~ 158 (210)
+|++. ++.|++|+. +.+|.++++. .++++++.+. .+.+++.|.+|++++++|.+ |+++.+
T Consensus 93 ll~~~------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~ 155 (359)
T 1x19_A 93 VINLE------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVP 155 (359)
T ss_dssp SEEEE------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSC
T ss_pred CeEee------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------Cccccc
Confidence 99997 579999996 5577766541 3788888775 35678899999999988764 778888
Q ss_pred Cch---HHHHHHHHHhhhhh-hhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 159 NPR---FNKHFNAAMYNYTS-LVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 159 ~p~---~~~~f~~~M~~~~~-~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+|+ ..+.|+.+|...+. ...+.+++.++ +++..+|||||||+|.++..++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~ 209 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAML 209 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHH
Confidence 999 99999999999888 77788999998 9999999999999999998875
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.95 E-value=1.6e-27 Score=201.52 Aligned_cols=174 Identities=18% Similarity=0.169 Sum_probs=156.9
Q ss_pred HHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcc
Q 036188 14 AYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGAR 93 (210)
Q Consensus 14 ~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~ 93 (210)
..+++++.+++.+++|++++++||||.|++ +|.|++|||+++|+ +++.++|+||+|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec------C
Confidence 678999999999999999999999999997 69999999999999 999999999999999999875 7
Q ss_pred cceeccccc-cccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCchhhhhhCCchhHhhccCchHHHHHHHHHhh
Q 036188 94 RLYSLNSVS-KYYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIPFNRAHGVHIFEYAGLNPRFNKHFNAAMYN 172 (210)
Q Consensus 94 ~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~f~~~~g~~~fe~l~~~p~~~~~f~~~M~~ 172 (210)
+.|++|+.+ ++|.++++ .++++++.+...+.+++.|.+|++++++|.++|+ + |+++.++|+..+.|...|..
T Consensus 74 ~~y~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp TEEEECHHHHHHTCTTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred CEEecCHHHHHHhccCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 999999999 68887666 5788888887665678899999999999888765 3 88889999999999999999
Q ss_pred hhhhhHHHHHHhCCCC--CCCCeEEEecCCccHHHHhhh
Q 036188 173 YTSLVMSNILESYKGF--DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 173 ~~~~~~~~~l~~~~~~--~~~~~vvDiGGg~G~~~~~l~ 209 (210)
........+++.++ + .+..+|||||||+|.++..++
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~ 184 (335)
T 2r3s_A 147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVA 184 (335)
T ss_dssp GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHH
T ss_pred HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHH
Confidence 88887888899998 8 888999999999999998875
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.94 E-value=1.4e-26 Score=197.25 Aligned_cols=182 Identities=14% Similarity=0.232 Sum_probs=153.2
Q ss_pred CcccchhcchHHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhccc
Q 036188 2 DSIVDGERDQSFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYS 81 (210)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~g 81 (210)
.+++|++..+.+..+++++.+++.+++|++++++||||.|++ |+|++|||+++|+ +++.++||||+|++.|
T Consensus 14 ~~~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~g 84 (352)
T 3mcz_A 14 ESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALG 84 (352)
T ss_dssp SCCCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCC
Confidence 357888888888889999999999999999999999999954 9999999999999 9999999999999999
Q ss_pred ceeeeccCCCcccceecccccc-ccccCCCCCChHHHHHHhcChhHHHHHhhHHHHHhcCCch-hhhhhCCchhHhhccC
Q 036188 82 VVECSLDASGARRLYSLNSVSK-YYVPNKDGVLLGPLIQIIQDKVILESWSQLKDAILEGGIP-FNRAHGVHIFEYAGLN 159 (210)
Q Consensus 82 l~~~~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-f~~~~g~~~fe~l~~~ 159 (210)
+|++. ++.|.+|+.++ ++.++.+ .+++.++.+. ..+++.|.+|++++++|.+. |+.. .++..+
T Consensus 85 ll~~~------~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~ 149 (352)
T 3mcz_A 85 LLTKE------GDAFRNTALTERYLTTTSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHD 149 (352)
T ss_dssp SEEEE------TTEEEECHHHHHHHSTTCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTC
T ss_pred CeEec------CCeeecCHHHHhhccCCCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccC
Confidence 99997 57899999997 5666555 5788887654 34678899999999998754 3321 234678
Q ss_pred chHHHHHHHHHhhhhhhhHHHHHHhCCCCCC-CCeEEEecCCccHHHHhhh
Q 036188 160 PRFNKHFNAAMYNYTSLVMSNILESYKGFDN-IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 160 p~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~-~~~vvDiGGg~G~~~~~l~ 209 (210)
|+..+.|+.+|...... ...+++.++ +.+ ..+|||||||+|.++..++
T Consensus 150 ~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~ 198 (352)
T 3mcz_A 150 TRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVL 198 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHH
Confidence 99999999999974332 347888888 877 9999999999999998875
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.21 E-value=1.8e-06 Score=73.80 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=47.6
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccc-ccc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK-YYV 106 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~-~l~ 106 (210)
+||..| . +|.|+.|||.++++ +++.++++|+.|.+.|+++.. .+ |.+|+.+. ++.
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~~-~~lt~~~~~~l~ 102 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------DG-VKLTEKGEELVA 102 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------SS-SEECHHHHHHHH
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------CC-EEECHHHHHHHH
Confidence 778888 5 59999999999999 999999999999999999875 35 99998765 443
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.78 E-value=2e-05 Score=50.75 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=47.4
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
+..|.++|.+++ .++|..|||+++|+ +...+.+++..|...|++... ..|+|.++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~-----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC-----CCceEeeC
Confidence 556888898754 58999999999999 999999999999999999775 46888764
No 19
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.68 E-value=7e-05 Score=50.04 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=52.3
Q ss_pred HHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 30 QAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 30 ~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
..-.+..|.++|.++++|.++|+.|||+++|+ +...+++.|.-|...|++.... ..++.|...+......
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g---~~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA---GTPPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES---SSSCEEEEC-------
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC---CCCCeeEEeCcHHhcc
Confidence 33456678889988766668999999999999 9999999999999999998752 2457888777665443
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.60 E-value=7.8e-05 Score=51.07 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=53.5
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccc
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~ 104 (210)
.++..-.++.|+..| . ++.|+.|||+++++ ++..+.+.|+.|...|++.+. . |.|.+++.+..
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~-----~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV-----G-ERWVVTDAGKI 88 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----T-TEEEECTTTCC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----C-CEEEECCCchH
Confidence 344455667788889 5 58999999999999 999999999999999999987 4 78999987654
No 21
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.49 E-value=0.00011 Score=48.66 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=49.9
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
.+..|.++|.+++++.++|+.|||+++|+ +...+.+.|.-|...|++.... ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g---~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA---GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC---SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC---CCCCceEecC
Confidence 35678888988754458999999999999 9999999999999999998762 1356777654
No 22
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.43 E-value=6.8e-05 Score=53.15 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=54.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHh--cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQL--LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVP 107 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~--~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~~ 107 (210)
++..|.+.|.+. +++|+.+||+.+ ++ .+..+.+-|+.|...|+++.. ..+.|++|+.++.+..
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~-----~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL-----ANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC-----STTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec-----CCceEEECchHHHHHH
Confidence 356688889776 599999999999 99 999999999999999999986 4569999999975543
No 23
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.30 E-value=0.00018 Score=58.87 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=49.6
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~ 104 (210)
+.|.+.|++.+ +++|+.|||+++|+ +..-+.|+|+.|+..|++.++ .++.|.+++....
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~-----~~~~Y~LG~~~~~ 91 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS-----ADGTLRIGPHSLR 91 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC-----TTSEEEECTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCcEEehHHHHH
Confidence 56888898865 58999999999999 999999999999999999997 4578999986443
No 24
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.28 E-value=0.00022 Score=47.31 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=50.1
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcc-cHHHHHHHHhcccceeeeccCCCcccceecccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPM-MLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~-~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~ 103 (210)
.+-.|.++|... +|.|+.+||+.+|+ .+. .+++.|..|...|+++... .+.-.|.+|+.++
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~---~gRP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG---TTPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC---SSSCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecC---CCCCCeEeCHhHH
Confidence 355677888886 59999999999999 998 9999999999999998652 1223799998765
No 25
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.02 E-value=0.001 Score=45.74 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+|.--.++.|...|.. ++.++.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3444455667777865 68999999999999 999999999999999999876
No 26
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.99 E-value=0.00086 Score=48.31 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~ 101 (210)
++.|+.|||+++++ ++..++++|+.|...|+++... +..|.|.++.-
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~---g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR---GAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC---CCCCceEeCCC
Confidence 68999999999999 9999999999999999998752 12467877653
No 27
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.95 E-value=0.00057 Score=46.68 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=44.2
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.--.++.|...|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 4444556778888877 59999999999999 999999999999999999876
No 28
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.94 E-value=0.0007 Score=47.35 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=46.2
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccc---eeccccc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRL---YSLNSVS 102 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~---y~~t~~s 102 (210)
-.++.|...|.. ++.|+.|||+.+++ ++..+.+.|+.|...|++... ..++ |.+|+.+
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~-----~~gr~~~y~l~~~~ 81 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESV-----KVGREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-----EETTEEEEEECSHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEE-----ecCCEEEEEechHH
Confidence 345667777844 58999999999999 999999999999999999875 2333 6666543
No 29
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.94 E-value=0.00078 Score=54.13 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=49.1
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s 102 (210)
+.|.+.|.+.+ +++|+.|||+++|+ +...+.|+|+.|...|++++. ..+.|.+++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC-----CCCcEEECHHH
Confidence 45677887753 58999999999999 999999999999999999986 46889998754
No 30
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.92 E-value=0.00062 Score=54.53 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=50.5
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
+.|.+.|.+.+ +++|+.|||+++|+ +..-+.|+|+.|...|++++.. ..++|.+++....|
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG----PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG----GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHHHHHH
Confidence 45677787654 58999999999999 9999999999999999999862 24789998865444
No 31
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.91 E-value=0.0014 Score=43.21 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=39.6
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..|.+.|.+. ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3467778775 58999999999999 999999999999999999854
No 32
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.91 E-value=0.00088 Score=47.90 Aligned_cols=54 Identities=26% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 26 PMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 26 ~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..+|.--.++.|+..|... ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3445555677899999854 58999999999999 999999999999999999875
No 33
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.90 E-value=0.00031 Score=56.97 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=50.4
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
+.|.+.|.+.+ +++|+.|||+++|+ +..-+.|+|+.|+..|++.++. ..++|.+++....|
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE----GARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTHHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHHHHH
Confidence 45677777643 68999999999999 9999999999999999999872 23899998865433
No 34
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.82 E-value=0.00098 Score=46.32 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=42.6
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.--.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 23 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 23 LGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp TCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 333455677777875 58999999999999 999999999999999999876
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.73 E-value=0.0012 Score=44.86 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..-.++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++...
T Consensus 21 l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3334566778888763 58999999999999 999999999999999999876
No 36
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.73 E-value=0.0051 Score=44.40 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCcccchhcchHHHHHHHHHhhchHHHHHH-----HHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 1 MDSIVDGERDQSFAYADQLATGVVLPMAIQ-----AVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~al~-----~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
|+.-.+.++...+..+.+..........-. ...++.|...|... ++.|..|||+.+++ ++..+.++++
T Consensus 1 M~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~ 73 (142)
T 3ech_A 1 MNYPVNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIR 73 (142)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHH
Confidence 455556666666666666655443332222 24556678888876 58999999999999 9999999999
Q ss_pred HHhcccceeee
Q 036188 76 LLASYSVVECS 86 (210)
Q Consensus 76 ~L~~~gl~~~~ 86 (210)
.|...|++++.
T Consensus 74 ~L~~~Glv~r~ 84 (142)
T 3ech_A 74 ELEGRNLVRRE 84 (142)
T ss_dssp HHHHTTSEEC-
T ss_pred HHHHCCCEeec
Confidence 99999999975
No 37
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.70 E-value=0.00084 Score=47.66 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+|.--.++.|...|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45555567788888875 69999999999999 999999999999999999875
No 38
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.68 E-value=0.00064 Score=47.55 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=39.6
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556666765 58999999999999 999999999999999999875
No 39
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.67 E-value=0.0011 Score=47.00 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=43.8
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+|.--.++.|+..|.. ++.++.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE
Confidence 34444456777788875 58999999999999 999999999999999999875
No 40
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.67 E-value=0.00092 Score=54.11 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=47.8
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~ 103 (210)
+.|.+.|...+ +++|+.|||+++|+ +..-+.|+|+.|...|++.+. ..+.|.+++...
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~-----~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR-----ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCeEEecHHHH
Confidence 45666776433 58999999999999 999999999999999999987 344899987543
No 41
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.66 E-value=0.001 Score=53.74 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=50.5
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
+.|.+.|...+ +++|+.|||+++|+ ++.-+.|+|+.|...|+++++ ++.|.+++....|.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHHHHHH
Confidence 45667776543 58999999999999 999999999999999999986 58999998765444
No 42
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.65 E-value=0.0019 Score=42.53 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=39.1
Q ss_pred hhhHHhhc-----CCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 37 IFEILDKA-----GPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 37 lfd~L~~~-----g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
|.++|.+. | +|.|+.|||+.+|+ .+..+++-|..|...|++.+.
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 56666654 5 69999999999999 999999999999999999987
No 43
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.62 E-value=0.0051 Score=44.67 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 036188 12 SFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (210)
Q Consensus 12 ~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~ 90 (210)
+...+++++.+.|....|.. |.. ++.+..||++.+ ++ ++..|.+.|+.|...|++++.....
T Consensus 15 pi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred cHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 45556666667666555543 433 699999999999 99 9999999999999999999763111
Q ss_pred C-cccceeccccccccc
Q 036188 91 G-ARRLYSLNSVSKYYV 106 (210)
Q Consensus 91 ~-~~~~y~~t~~s~~l~ 106 (210)
. ..-.|.+|+.++.|.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 0 123599999988765
No 44
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.53 E-value=0.0028 Score=41.79 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=39.8
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
|.++|.+. +.++++|||+++++ ++.-++|-|..|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 66788876 59999999999999 999999999999999999887
No 45
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.53 E-value=0.001 Score=54.03 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=49.6
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
+.|.+.|...+ +++|+.|||+++|+ +..-+.|+|+.|...|++.++ ++.|.+++....|
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~~~l 82 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD------GSAFWLTPRVLEL 82 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES------SSEEEECGGGGGT
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCEEEEcHHHHHH
Confidence 45677776543 58999999999999 999999999999999999986 5899998865444
No 46
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.53 E-value=0.0091 Score=41.40 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCC-
Q 036188 13 FAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDAS- 90 (210)
Q Consensus 13 ~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~- 90 (210)
...+++++.+.+....|. .|.. ++.+..|||+.+ ++ ++..+.+.|+.|...|++++.....
T Consensus 4 ~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILX---------HLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp HHHHHHHHCSTTHHHHHH---------HHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHcCccHHHHHH---------HHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 344555555555544443 3443 589999999999 99 9999999999999999998763110
Q ss_pred Ccccceeccccccccc
Q 036188 91 GARRLYSLNSVSKYYV 106 (210)
Q Consensus 91 ~~~~~y~~t~~s~~l~ 106 (210)
...-.|.+|+.++.+.
T Consensus 67 ~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 67 PPKVEYELSEYGRSLE 82 (107)
T ss_dssp SCEEEEEECTTGGGGH
T ss_pred CCeEEEEECccHHHHH
Confidence 0123488888775443
No 47
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.50 E-value=0.0035 Score=47.08 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 25 LPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 25 ~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
...||++.+.+.. ...+++.|+++||+++++ ++..++++|..|...|++.... +..|.|.++.
T Consensus 26 ~~yAlr~L~~LA~------~~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar 88 (159)
T 3lwf_A 26 GRYGLTITLELAK------RIGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR---GAHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHHH------TTTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---STTCEEEECS
T ss_pred HHHHHHHHHHHHh------cCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec---CCCCceEecC
Confidence 3446666655432 211268999999999999 9999999999999999998763 1346677654
No 48
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.48 E-value=0.0019 Score=43.73 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccceecccccc
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSK 103 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~~~~~y~~t~~s~ 103 (210)
.++..-.++.|+..|... ++.|..|||+.+++ ++..+.+.|+.|...|++.+.... ......|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455556677888888754 58999999999999 999999999999999999864200 00122466665543
No 49
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=96.46 E-value=0.003 Score=46.71 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccc
Q 036188 25 LPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (210)
Q Consensus 25 ~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~ 104 (210)
...||++.+.+... . + ++.|+.+||+++++ ++..++++|..|...|+++... +.|.|.++.-..-
T Consensus 13 ~~yAl~~L~~La~~----~-~--~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r----G~GGy~L~~~p~~ 77 (149)
T 1ylf_A 13 FSIAVHILSILKNN----P-S--SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR----GPGGAGLLKDLHE 77 (149)
T ss_dssp HHHHHHHHHHHHHS----C-G--GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSCGGG
T ss_pred HHHHHHHHHHHHhC----C-C--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc----CCCceEeCCChhh
Confidence 34577776665431 1 1 58999999999999 9999999999999999998752 2566776654221
Q ss_pred cccCCCCCChHHHHHHh
Q 036188 105 YVPNKDGVLLGPLIQII 121 (210)
Q Consensus 105 l~~~~~~~~~~~~~~~~ 121 (210)
-++++.+...
T Consensus 78 -------Itl~dVi~a~ 87 (149)
T 1ylf_A 78 -------ITLLDVYHAV 87 (149)
T ss_dssp -------CBHHHHHHHH
T ss_pred -------CcHHHHHHHH
Confidence 2456666554
No 50
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.44 E-value=0.0026 Score=46.81 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
++.|+++||+++++ ++..++++|..|...|++.... +..|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR---GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS---SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC---CCCCCeeecC
Confidence 58999999999999 9999999999999999998653 1346787654
No 51
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.43 E-value=0.0031 Score=45.81 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.|..+||+.+++ ++..+.+.++.|...|++.+. ..+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----eCceEEEchhHHHHH
Confidence 58999999999999 999999999999999999987 456788888876543
No 52
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.43 E-value=0.0029 Score=42.66 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=39.8
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
|.++|.+. +.+|++|||+.+++ ++.-++|-|..|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 66788876 59999999999999 999999999999999999987
No 53
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.34 E-value=0.0018 Score=48.17 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 24 VLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 24 ~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
-...+|.--.++.|...|.. +++|+.|||+.+++ ++..+.+.|+.|...|+++..
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~ 104 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPR 104 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34567777788999999985 69999999999999 999999999999999999876
No 54
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.33 E-value=0.0033 Score=44.97 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=43.5
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+|.--.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++...
T Consensus 42 aL~~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3333456778888875 58999999999999 999999999999999999875
No 55
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.32 E-value=0.0037 Score=42.74 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=43.5
Q ss_pred CCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 50 LSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++..+||..+++ +++.+++.++.|...|++++. .+.|.+|+.+..+.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~------~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE------CCeeEEChhHHHHH
Confidence 899999999999 999999999999999999997 56799999998654
No 56
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.31 E-value=0.0032 Score=41.89 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=45.9
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVS 102 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s 102 (210)
....|.++|.++ ++|+.|||+++|+ +...+++.|..|...|++.... +.+-.|.++..+
T Consensus 18 ~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~---~~PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD---DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS---SSSCEEESCC--
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC---CCCCcceeccCc
Confidence 445677788863 4999999999999 9999999999999999998762 235566666543
No 57
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0036 Score=50.32 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
.++.|...|.+. +++|..|||+++++ ++..+.|.++.|...|++++.. ....|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG----KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEEECHHHHHHH
Confidence 345566677665 58999999999999 9999999999999999999862 356799998887553
No 58
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.08 E-value=0.0068 Score=39.49 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=47.9
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
+-.|++.|.++| .|++..|||+++|+ +..-+.+.|..|-..|.+... ..-.|+++
T Consensus 21 eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP-----kRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT-----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEES
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC-----CCceeeCC
Confidence 455788899887 89999999999999 999999999999999999876 45667765
No 59
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=96.06 E-value=0.012 Score=44.13 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=46.5
Q ss_pred HHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccc
Q 036188 26 PMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (210)
Q Consensus 26 ~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~ 101 (210)
..||++.+.+.. .+ +++.|.++||+++++ ++.+++++|..|...|+++... +..|.|.+..-
T Consensus 12 ~yAlr~l~~La~------~~-~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar~ 73 (162)
T 3k69_A 12 SVAVHSILYLDA------HR-DSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV---GKNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHHHHHT------TT-TSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC---STTCEEECCSC
T ss_pred HHHHHHHHHHHh------CC-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec---CCCCCeEecCC
Confidence 346666554432 21 268999999999999 9999999999999999997653 13466887653
No 60
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.05 E-value=0.0026 Score=44.72 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCC--HHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeecc
Q 036188 12 SFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLS--ASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLD 88 (210)
Q Consensus 12 ~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t--~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~ 88 (210)
+...+++.+.+.|....|. .|.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|++++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec
Confidence 3444566666666544443 4554 5777 99999999 99 99999999999999999998621
Q ss_pred CCCcccceeccccccccc
Q 036188 89 ASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 89 ~~~~~~~y~~t~~s~~l~ 106 (210)
..-.|.+|+.++.+.
T Consensus 79 ---r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 ---QITTYALTEKGMNVR 93 (111)
T ss_dssp ---SSEEEEECHHHHHHH
T ss_pred ---CcEEEEECccHHHHH
Confidence 134688888776554
No 61
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=96.03 E-value=0.0052 Score=43.91 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=40.7
Q ss_pred hhChhhHHhhcCCCCC-CCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTK-LSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~-~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..|+..|.+.+ +| +|+.|||+++++ +...+.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 455677777654 46 999999999999 999999999999999999875
No 62
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.98 E-value=0.021 Score=41.50 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=39.4
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|...+ +++|..|||+.+++ ++..+.++++-|...|++++.
T Consensus 41 q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 41 SYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 344566676544 57899999999999 999999999999999999875
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.97 E-value=0.011 Score=42.59 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=48.5
Q ss_pred HHhhChhhHHhh-cCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 32 VYELGIFEILDK-AGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 32 a~~lglfd~L~~-~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
..++.|+..|.. . ++.|..+||+.+++ ++..+.++++.|...|++++..... ...-.+.+|+.++.+
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHH
Confidence 345667777876 4 59999999999999 9999999999999999998762100 011125666655543
No 64
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.94 E-value=0.0076 Score=44.31 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccc
Q 036188 25 LPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (210)
Q Consensus 25 ~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~ 104 (210)
...||++.+.+ +..+ ++ |+++||+++++ ++.+|+++|..|...|++.... +.|.|.++.-..-
T Consensus 8 ~~yAl~~L~~L------a~~~--~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r----G~GGy~Lar~p~~ 70 (145)
T 1xd7_A 8 LAVAIHILSLI------SMDE--KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA----GVPGASLKKDPAD 70 (145)
T ss_dssp HHHHHHHHHHH------HTCS--CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS----SSSSCEESSCGGG
T ss_pred HHHHHHHHHHH------HhCC--CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec----CCCCceecCCHHH
Confidence 34566666544 3332 35 99999999999 9999999999999999998762 2566766543321
Q ss_pred cccCCCCCChHHHHHHh
Q 036188 105 YVPNKDGVLLGPLIQII 121 (210)
Q Consensus 105 l~~~~~~~~~~~~~~~~ 121 (210)
-++.+.+...
T Consensus 71 -------Itl~dVi~av 80 (145)
T 1xd7_A 71 -------ISLLEVYRAV 80 (145)
T ss_dssp -------CBHHHHHHHH
T ss_pred -------CCHHHHHHHH
Confidence 2456666554
No 65
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.83 E-value=0.0078 Score=39.59 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=40.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
+..|.+.|.+.+ +++.|++||++.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 345778887641 0389999999999 88 9999999999999999998763
No 66
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.81 E-value=0.0064 Score=42.56 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=52.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCC-
Q 036188 13 FAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDAS- 90 (210)
Q Consensus 13 ~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~- 90 (210)
...++++..+.+.... ...|.. ++.+..|||+.+ ++ ++..+.+.|+.|...|++++.....
T Consensus 12 ~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 12 INLALSTINGKWKLSL---------MDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHTTCSTTHHHH---------HHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred HHHHHHHHcCccHHHH---------HHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 3444454445554433 334555 589999999999 99 9999999999999999998763110
Q ss_pred Ccccceeccccccccc
Q 036188 91 GARRLYSLNSVSKYYV 106 (210)
Q Consensus 91 ~~~~~y~~t~~s~~l~ 106 (210)
...-.|.+|+.++.+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 0112488888776443
No 67
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.80 E-value=0.015 Score=40.17 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCC
Q 036188 12 SFAYADQLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDAS 90 (210)
Q Consensus 12 ~~~~l~~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~ 90 (210)
+...++++..+.+....|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|...|++++.....
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~ 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCC
Confidence 4455666666666554443 3443 589999999999 49 9999999999999999998763110
Q ss_pred -Ccccceeccccccccc
Q 036188 91 -GARRLYSLNSVSKYYV 106 (210)
Q Consensus 91 -~~~~~y~~t~~s~~l~ 106 (210)
...-.|.+|+.++.+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 0123489998876544
No 68
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.78 E-value=0.0082 Score=44.20 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=45.2
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
|...|... ++.|..+||+.+++ ++..+.+.++.|...|++... ....+.+|+.+..+
T Consensus 45 i~~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~-----~~~~~~lT~~g~~~ 101 (155)
T 2h09_A 45 ISDLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI-----PWRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE-----TTTEEEECHHHHHH
T ss_pred HHHHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe-----cCCceEEChhHHHH
Confidence 33366654 58999999999999 999999999999999999886 34556677666543
No 69
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.75 E-value=0.0095 Score=41.89 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 31 AVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 31 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.-.++.|+..|.+ ++.|+.|||+.+++ ++..+.|.|+.|...|++...
T Consensus 31 ~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 31 TPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456778888887 48999999999999 999999999999999999865
No 70
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.0085 Score=43.17 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
++.|..+||+++++ ++..+.+.++.|...|++.+. ...|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec------CCeEEEChhHHHH
Confidence 68999999999999 999999999999999999987 3667777766543
No 71
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.73 E-value=0.0097 Score=43.80 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.+..||++.+++ ++..+.+.|+.|...|++++........-.|.+|+.++.+.
T Consensus 36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 58999999999999 99999999999999999997631100123688888776543
No 72
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=95.70 E-value=0.019 Score=47.07 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=36.9
Q ss_pred CchhHhhcc-C-c-hHHHHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 150 VHIFEYAGL-N-P-RFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 150 ~~~fe~l~~-~-p-~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++++.. . . -....|.. +..........+++.++.+....+|||||||.|.++..++
T Consensus 75 ~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la 136 (312)
T 3vc1_A 75 PVDRAALGDPEHSEYEKKVIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAH 136 (312)
T ss_dssp CCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHH
T ss_pred hhHHHhhcCCCccccchHHHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHH
Confidence 345665543 1 1 12334444 4444444455666666536678899999999999998775
No 73
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.59 E-value=0.02 Score=40.92 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=50.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
++.|+..|... ++.|..+||+.+++ ++..+.+.++.|...|++++..... ...-.|.+|+.++.+.
T Consensus 33 ~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44577778775 58999999999999 9999999999999999998763110 1122477787776554
No 74
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.58 E-value=0.013 Score=39.88 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=40.6
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|...|... ++.|..|||+.+++ ++..+.+.++.|...|++.+.
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 345566677664 58999999999999 999999999999999999876
No 75
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.51 E-value=0.021 Score=42.13 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=47.4
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
+.|...|... +++|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 49 ~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 113 (162)
T 3k0l_A 49 FTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDK 113 (162)
T ss_dssp HHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHH
Confidence 4466777775 58999999999999 9999999999999999999763110 011236666665543
No 76
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.51 E-value=0.013 Score=41.82 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=40.7
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeec
Confidence 344567777765 58999999999999 999999999999999999875
No 77
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.50 E-value=0.037 Score=37.69 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=39.7
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
|.--.++.|+..|... ++.|+.|||+++|+ ++..+.+.|+.|... ++...
T Consensus 24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE
T ss_pred hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe
Confidence 3334556666444433 58999999999999 999999999999999 99765
No 78
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.49 E-value=0.0071 Score=41.08 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHH----HHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDI----AAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eL----A~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.|+..|... ++.|..|| |+.+++ ++..+.++++.|...|++++..+. ....|.+|+.++.+.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~--r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER--GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC--CceEEEECHHHHHHH
Confidence 34466667664 58999999 899999 999999999999999999875210 123466666665443
No 79
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=95.47 E-value=0.0068 Score=47.66 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+++.++ .....+|||||||.|.++..++
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la 110 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALIS 110 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHH
Confidence 345556665 6777899999999999988775
No 80
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.41 E-value=0.015 Score=42.00 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=48.8
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
.++.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 98 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAY 98 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHH
Confidence 345567777766 48999999999999 9999999999999999999753110 011236677666544
No 81
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.38 E-value=0.0082 Score=43.43 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 48 TKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 48 ~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
++++..||++.+ |+ ++..+.+.|+.|...|++++..... ...-.|.+|+.++.+.
T Consensus 47 g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 599999999999 79 9999999999999999998763110 0112588888776543
No 82
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=95.38 E-value=0.013 Score=46.08 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+....+.++...+|||||||.|.++..++
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~ 60 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCK 60 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHH
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHH
Confidence 3334444435567899999999999988764
No 83
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.35 E-value=0.038 Score=39.64 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=45.2
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+.
T Consensus 41 vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 41 VLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 45555553 59999999999999 9999999999999999999763110 0112366666665443
No 84
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.33 E-value=0.013 Score=41.76 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=40.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 44466677765 58999999999999 999999999999999999875
No 85
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.33 E-value=0.015 Score=41.53 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=47.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
+..|...|...+ +++.|..+||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHH
Confidence 344566777653 128999999999999 9999999999999999998763110 011235566666543
No 86
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.30 E-value=0.014 Score=41.67 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=41.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|... ++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 355677788765 59999999999999 999999999999999999875
No 87
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.28 E-value=0.014 Score=42.17 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=40.6
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|... +++|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 445567777775 59999999999999 999999999999999999875
No 88
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.27 E-value=0.014 Score=42.01 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=47.9
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++..+.. ...-.|.+|+.++.+
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~ 100 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEV 100 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHH
Confidence 345567777765 58999999999999 9999999999999999998752110 001135666665543
No 89
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.26 E-value=0.033 Score=40.41 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=39.7
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++.
T Consensus 40 ~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 40 LFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeec
Confidence 4467777765 58999999999999 999999999999999999876
No 90
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.24 E-value=0.014 Score=41.96 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=40.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|... ++.|..+||+.+++ ++..+.+.++.|...|++++.
T Consensus 39 ~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 39 QFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp HHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 45567777765 48999999999999 999999999999999999876
No 91
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.23 E-value=0.013 Score=42.27 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=47.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
.+..|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 104 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKE 104 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHH
Confidence 344566777765 59999999999999 9999999999999999998763110 011235566655533
No 92
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.22 E-value=0.013 Score=42.50 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=40.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|... ++.|..+||+.+++ ++..+.++++-|...|++.+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeec
Confidence 34467777765 58999999999999 999999999999999999986
No 93
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.17 E-value=0.0086 Score=40.53 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=40.4
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---ceeccccccccc
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~---~y~~t~~s~~l~ 106 (210)
++|..|||+.+++ ++..+.++++.|...|++... .++ .|.+|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-----~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-----LEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-----EETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-----CCCCeEEEEEChhHHHHH
Confidence 4999999999999 999999999999999999433 233 488888776543
No 94
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.14 E-value=0.017 Score=41.11 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=46.8
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|... ++.|..+||+.+++ ++..+.++++.|...|++++..... ...-.+.+|+.++.+
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~ 101 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAI 101 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHH
Confidence 34456667665 48999999999999 9999999999999999998753110 011125666655533
No 95
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=95.12 E-value=0.015 Score=45.43 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=22.6
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+...++ .....+|||||||.|.++..++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 62 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAH 62 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHH
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHH
Confidence 4555555 5567899999999999988765
No 96
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.11 E-value=0.017 Score=42.44 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=39.6
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeee
Confidence 34467777764 59999999999999 999999999999999999875
No 97
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.11 E-value=0.016 Score=40.21 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=38.6
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.|...+...| .+.|..+||+.+|+ +...+++.|..|...|++...
T Consensus 21 l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 45666664433 48999999999999 999999999999999999764
No 98
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=95.11 E-value=0.019 Score=43.92 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+.......+|||||||.|.++..++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~ 65 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLS 65 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHH
Confidence 3444444335556799999999999998775
No 99
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.09 E-value=0.083 Score=38.01 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=40.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeec
Confidence 34466777765 58999999999999 999999999999999999875
No 100
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.07 E-value=0.01 Score=40.12 Aligned_cols=63 Identities=11% Similarity=0.021 Sum_probs=45.0
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCccc-HHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMM-LDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~-l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
+...|...+ .+.|..|||+.+++ ++.. +.++++.|...|++..+..+ ...-.+.+|+.++.+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~d-rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLS-YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEE-TTEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCC-CCeEEEEECHhHHHHH
Confidence 444555542 37999999999999 9999 99999999999999843100 0122366777665443
No 101
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=95.07 E-value=0.011 Score=46.54 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++..++ .....+|||||||.|.++..++
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~ 112 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLL 112 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTH
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHH
Confidence 45566666 6678899999999999998765
No 102
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.04 E-value=0.015 Score=42.38 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=49.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYVP 107 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~~ 107 (210)
++.|...|... ++.|..+||+.+++ ++..+.++++.|...|++++..... ...-.+.+|+.++.+..
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 44567777765 58999999999999 9999999999999999998762100 01124778888775543
No 103
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.94 E-value=0.018 Score=42.17 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|...+ ++.|..+||+.+++ ++..+.++++.|...|++++.
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 344677774322 68999999999999 999999999999999999875
No 104
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.94 E-value=0.089 Score=38.16 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=45.8
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~~~~~y~~t~~s~~l 105 (210)
+.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++.... +...-.+.+|+.++.+
T Consensus 46 ~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~ 110 (155)
T 3cdh_A 46 WRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRAL 110 (155)
T ss_dssp HHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHH
T ss_pred HHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHH
Confidence 4456666654 58999999999999 999999999999999999875210 0011236666665543
No 105
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.93 E-value=0.024 Score=40.66 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=38.8
Q ss_pred hChhhHH-hhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEIL-DKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L-~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.|...| ... ++.|..+||+.+++ ++..+.++++-|...|++++.
T Consensus 40 ~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 40 WLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp HHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeec
Confidence 3456667 443 68999999999999 999999999999999999876
No 106
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.84 E-value=0.074 Score=39.41 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=48.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
++.|...|... +++|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 44567777765 58999999999999 9999999999999999998753110 0112366777665443
No 107
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.83 E-value=0.029 Score=38.27 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=48.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHH-HhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAA-QLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~-~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.|.-.|+.+ ++.|+.+||+ ..++ +...+.|=++.|...|+++.+ +++ +.+|+.++.+.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~-----~~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS-----GDG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE-----TTE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC-----CCC-eeeCHhHHHHH
Confidence 34455667775 4999999999 9999 999999999999999999943 344 77887776543
No 108
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=94.81 E-value=0.027 Score=44.85 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~ 80 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLA 80 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 46677776 7778899999999999988765
No 109
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.80 E-value=0.029 Score=40.35 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=44.7
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccC-CCcccceecccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA-SGARRLYSLNSVSKYY 105 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~~~~~y~~t~~s~~l 105 (210)
.++.|...|.. ++.|..|||+.+++ ++..+.++++.|...|++++..+. +...-.+.+|+.+..+
T Consensus 39 ~~~~iL~~l~~----~~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~ 104 (146)
T 3tgn_A 39 TQEHILMLLSE----ESLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPI 104 (146)
T ss_dssp HHHHHHHHHTT----CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHH
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHH
Confidence 44556667766 34999999999999 999999999999999999875210 0012236666655433
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.79 E-value=0.024 Score=42.20 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=46.6
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|...+ +++|..|||+.+++ ++..+.++++-|...|++++..+.. ...-.+.+|+.++.+
T Consensus 55 q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 121 (166)
T 3deu_A 55 HWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPL 121 (166)
T ss_dssp HHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHH
Confidence 444666776633 58999999999999 9999999999999999999763110 011236666665543
No 111
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.018 Score=41.47 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=47.9
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---ceeccccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~---~y~~t~~s~~l~ 106 (210)
.++.|+..|...+ + |..+||+.+++ ++..+.++++.|...|++++.... .+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~~---~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEEP---R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS--KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHSC---E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC---C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC--CCCceEEEEECHHHHHHH
Confidence 3455777787753 5 99999999999 999999999999999999876311 111 367777665443
No 112
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.76 E-value=0.024 Score=38.79 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
++.+..+||+.+++ +...|.|++.-|...||++....+ ..-+...+|+.++.+
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~-D~R~~v~LT~~G~~~ 87 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEA-DGRGHASLTQEGAAL 87 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECT-TSCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCC-CCceeEEECHHHHHH
Confidence 68999999999999 999999999999999999875321 123446777766543
No 113
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.74 E-value=0.031 Score=40.69 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=41.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|.+.|.++ ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 345678888775 58999999999999 999999999999999999864
No 114
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.73 E-value=0.032 Score=40.68 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=41.5
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|... ++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 45 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEee
Confidence 456677778775 48999999999999 999999999999999999875
No 115
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.72 E-value=0.021 Score=41.03 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=39.5
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++.+.
T Consensus 32 ~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 32 YLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 3456677765 48999999999999 999999999999999999876
No 116
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.71 E-value=0.021 Score=41.90 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=45.7
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 54 ~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 117 (159)
T 3s2w_A 54 PFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKL 117 (159)
T ss_dssp HHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHH
T ss_pred HHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHH
Confidence 356666665 58999999999999 9999999999999999998763110 011235566655543
No 117
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.71 E-value=0.031 Score=40.09 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=39.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|. . ++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 39 ~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 39 DFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEee
Confidence 344566676 3 69999999999999 999999999999999999875
No 118
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.70 E-value=0.068 Score=39.21 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 120 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKK 120 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHH
Confidence 34466777765 48999999999999 9999999999999999999763110 011235666655543
No 119
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.68 E-value=0.12 Score=37.28 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=47.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee--eccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC--SLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~--~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|... +++|..+||+.+++ ++..+.++++-|...|++++ ..+.. ...-.+.+|+.++.+
T Consensus 43 ~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~ 110 (154)
T 2qww_A 43 QLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDL 110 (154)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHH
Confidence 34566777765 58999999999999 99999999999999999998 42110 011236666666543
No 120
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.67 E-value=0.033 Score=40.74 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=41.2
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|..+ ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355677788775 58999999999999 999999999999999999764
No 121
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.63 E-value=0.019 Score=40.94 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=40.8
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEee
Confidence 345567777775 48999999999999 999999999999999999875
No 122
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.62 E-value=0.013 Score=42.20 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=51.1
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYVP 107 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~~ 107 (210)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++..... ...-.+.+|+.++.+..
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345567777765 48999999999999 9999999999999999998753110 11223778888876554
No 123
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.60 E-value=0.022 Score=41.87 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=40.6
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|+..|... ++.|..+||+.+++ ++..+.++++.|...|++++.
T Consensus 54 ~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 54 KMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 45567777765 58999999999999 999999999999999999875
No 124
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.58 E-value=0.018 Score=41.87 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=45.4
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|... ++.|..|||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+
T Consensus 43 q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 108 (149)
T 4hbl_A 43 QYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQ 108 (149)
T ss_dssp HHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHH
Confidence 34456677665 59999999999999 9999999999999999998752110 011235566655433
No 125
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.57 E-value=0.1 Score=39.68 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=52.4
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhc-CCCCCCcccHHHHHHHHhcccceeeec---cCCCcccceeccccc
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLL-TKNKDAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVS 102 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~-~~~~~~~~~l~rlLr~L~~~gl~~~~~---~~~~~~~~y~~t~~s 102 (210)
.+|.-=+++.|...|.+ ++.|+.|||+.++ + +...+.+-|+.|...||++... ..+...-.|.+++.+
T Consensus 18 ~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~ 89 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQA 89 (182)
T ss_dssp HHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTT
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccc
Confidence 34444567888888976 6999999999996 8 8889999999999999997431 011112348777766
Q ss_pred cccc
Q 036188 103 KYYV 106 (210)
Q Consensus 103 ~~l~ 106 (210)
..+.
T Consensus 90 ~~~~ 93 (182)
T 4g6q_A 90 GDAD 93 (182)
T ss_dssp TTSS
T ss_pred ccCC
Confidence 5443
No 126
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.56 E-value=0.028 Score=40.09 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=47.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
++.|...|...+ +++.|..|||+.+++ ++..+.++++-|...|++++..+.. ...-.+.+|+.++.+
T Consensus 33 ~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 33 QGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 445666776642 148999999999999 9999999999999999998763110 011235555555543
No 127
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.55 E-value=0.029 Score=43.92 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.+..+||+.+++ ++..+.+.++-|...|++++. ....+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD-----KKAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe-----cCCCeEECHHHHHHH
Confidence 69999999999999 999999999999999999987 457789999887554
No 128
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.52 E-value=0.036 Score=43.10 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=43.6
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+|..-.++.|...|.. +|+|+.|||+.+++ ++..+.+.|+.|...|++...
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~ 61 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESR 61 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE
Confidence 34444556667777865 69999999999999 999999999999999999875
No 129
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.50 E-value=0.19 Score=36.21 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=38.3
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
..|...| .. ++.|..|||+.+++ ++..+.++++.|...|++++
T Consensus 41 ~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 41 SHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 3367777 54 69999999999999 99999999999999999996
No 130
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.49 E-value=0.024 Score=37.08 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=39.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..|...|... ++.|+.||++.++.....++.-+.++|+.|...|++.+.
T Consensus 11 e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 11 ELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 45566677664 599999999999730001788999999999999999976
No 131
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=94.48 E-value=0.019 Score=43.84 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .+.. +|||||||.|.++..++
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~ 62 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALA 62 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHH
Confidence 44555555 5544 99999999999988775
No 132
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=94.47 E-value=0.029 Score=44.21 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.5
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+.+.++ .....+|||||||.|.++..++
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~ 63 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAA 63 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHH
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHH
Confidence 4455555 4567899999999999988775
No 133
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.034 Score=42.67 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=20.5
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l 208 (210)
.+++.+.......+|||||||.|.++..+
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l 85 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSI 85 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHC
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHh
Confidence 34444322445679999999999998765
No 134
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=94.44 E-value=0.021 Score=46.19 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=24.8
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+++..+ .....+|||||||+|.++..++
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La 64 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKAL 64 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHH
Confidence 345566666 7778899999999999998775
No 135
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.43 E-value=0.04 Score=40.89 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=41.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ +++|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 345677888775 58999999999999 999999999999999999864
No 136
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.42 E-value=0.029 Score=40.98 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 356678888775 58999999999999 999999999999999999864
No 137
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=94.40 E-value=0.0057 Score=47.11 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=18.9
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||.|.++..++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~ 70 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLA 70 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHG
T ss_pred cCCCCcEEEEcCCCCHHHHHHH
Confidence 4567899999999999998875
No 138
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=94.37 E-value=0.055 Score=43.53 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=21.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.+ .+...+|+|||||+|.++..++
T Consensus 62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la 89 (261)
T 4gek_A 62 MLAERF--VQPGTQVYDLGCSLGAATLSVR 89 (261)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTHHHHHHH
T ss_pred HHHHHh--CCCCCEEEEEeCCCCHHHHHHH
Confidence 344444 3667899999999999887765
No 139
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.36 E-value=0.069 Score=39.12 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=46.2
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
.+.-.|...+ ++.+..|||+.+++ ++..+.++++-|...|++++..+.. ...-...+|+.++.+.
T Consensus 35 ~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 35 VTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 3445566544 47888999999999 9999999999999999998763110 0112366677665443
No 140
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=94.34 E-value=0.037 Score=44.98 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.7
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la 91 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAV 91 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHH
Confidence 45667776 7778899999999999998775
No 141
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.27 E-value=0.022 Score=42.54 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..+ .....+|+|||||.|.++..++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~ 65 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLS 65 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHH
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHH
Confidence 445554 3567799999999999988765
No 142
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=94.26 E-value=0.035 Score=44.88 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=23.7
Q ss_pred HHHHHhC----CCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESY----KGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~----~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+ . +....+|||||||.|.++..++
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~ 101 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLV 101 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 4455555 4 6778899999999999998775
No 143
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=94.21 E-value=0.044 Score=40.77 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+. .....+|+|||||.|.++..++
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~ 71 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALA 71 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHG
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHH
Confidence 34566665 6677899999999999998775
No 144
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=94.19 E-value=0.046 Score=43.55 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.++ .....+|||||||.|.++..++
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~ 62 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLA 62 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 5566666 7778899999999999988765
No 145
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.18 E-value=0.035 Score=37.66 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|..|||+.+|+ ++..+.|.++.|...|++.+.
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 58999999999999 999999999999999999986
No 146
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=94.12 E-value=0.026 Score=44.54 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=24.3
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 74 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYIN 74 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHH
Confidence 45566666 7778899999999999998775
No 147
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.045 Score=40.03 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=41.5
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455678888875 58999999999999 999999999999999999864
No 148
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.08 E-value=0.031 Score=41.47 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=45.6
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---ceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~---~y~~t~~s~~l~ 106 (210)
++.|...|...+ ++++|..|||+.+++ ++..+.++++.|...|++++..+. .+. .+.+|+.++.+.
T Consensus 48 q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~--~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKP--ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCC--CCCCeeEeEECHHHHHHH
Confidence 344566676642 158999999999999 999999999999999999876311 112 366777666444
No 149
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.07 E-value=0.047 Score=40.04 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=41.3
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ ++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 345677888775 58999999999999 999999999999999999864
No 150
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=94.02 E-value=0.052 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|.++..+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~ 70 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLAD 70 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTT
T ss_pred CCCCcEEEeCCcCCHHHHHHHH
Confidence 4568999999999999988763
No 151
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=93.98 E-value=0.019 Score=46.31 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=20.6
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..++ +....+|+|+|||.|.++..++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la 129 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYIL 129 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHH
Confidence 4455555 7778899999999999988765
No 152
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.96 E-value=0.065 Score=41.23 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++....+..|...|.. +++|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3444566778888874 59999999999999 999999999999999999875
No 153
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.94 E-value=0.011 Score=47.09 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=45.1
Q ss_pred HHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 26 PMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 26 ~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
..+|.--.++.|+..|.. +|+|+.|||+.+|+ ++..+.+.|+.|...|++..
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345555567778888876 69999999999999 99999999999999999987
No 154
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=93.94 E-value=0.025 Score=48.35 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.8
Q ss_pred hHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 177 VMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 177 ~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+++.++ .....+|||||||.|.++..++
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~ 126 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQ 126 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHH
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHH
Confidence 4456677776 7778899999999999988775
No 155
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.93 E-value=0.04 Score=40.38 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=41.3
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ ++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355678888775 58999999999999 999999999999999999864
No 156
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.91 E-value=0.027 Score=40.06 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=47.0
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
..|...|...+ +++.|..|||+.+++ ++..+.++++-|...|++++..+.. ...-.+.+|+.++.+.
T Consensus 40 ~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 40 FAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 33556666541 148999999999999 9999999999999999998752110 1122356666665443
No 157
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.89 E-value=0.059 Score=40.56 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=41.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++..|...|.++ +++|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 455678888875 58999999999999 999999999999999999754
No 158
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=93.88 E-value=0.036 Score=44.59 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.7
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..++ . +..+|||||||.|.++..++
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~ 87 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMA 87 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHH
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHH
Confidence 4566655 3 36799999999999998775
No 159
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.84 E-value=0.045 Score=39.26 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=37.2
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+...|.... +++|..|||+++++ ++..+.++++.|...|++++.
T Consensus 31 il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455554222 58999999999999 999999999999999999875
No 160
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=93.83 E-value=0.046 Score=41.64 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=23.5
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..++ .....+|||||||+|.++..++
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la 59 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEAS 59 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHH
Confidence 4456665 6778899999999999998775
No 161
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=93.82 E-value=0.079 Score=40.38 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=47.5
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccc-eeeeccCCCcccceeccccc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSV-VECSLDASGARRLYSLNSVS 102 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl-~~~~~~~~~~~~~y~~t~~s 102 (210)
-....|.+.|.+++ +++|+.|||+++++ +.+-++|-++.|...|+ +... .+.|.+.+..
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECCTTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE------CCEEEECCcc
Confidence 34566888887653 57999999999999 99999999999999999 7654 4567776543
No 162
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=93.81 E-value=0.063 Score=43.10 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~ 83 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAV 83 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHH
Confidence 35566666 6777899999999999988775
No 163
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.80 E-value=0.026 Score=39.65 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=38.6
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhc----CCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLL----TKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~----~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..|...|... ++.|..|||+.++ + .+..+.++++-|...|++.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 34455566654 5999999999999 6 799999999999999999986
No 164
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=93.70 E-value=0.055 Score=44.26 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la 109 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAV 109 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHH
Confidence 45566666 6777899999999999988765
No 165
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=93.68 E-value=0.06 Score=41.75 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=22.0
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++...+......+|||||||.|.++..++
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~ 63 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLM 63 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHH
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHH
Confidence 444444423456899999999999998775
No 166
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=93.64 E-value=0.026 Score=45.27 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++..++ .....+|||||||+|.++..++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 118 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLL 118 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHH
Confidence 35566666 7778899999999999988775
No 167
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.63 E-value=0.074 Score=38.17 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceec
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~ 98 (210)
--+.-|.+.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+....+ +..+|..
T Consensus 11 ~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~-~~~~y~~ 75 (131)
T 2o03_A 11 RQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDT-GESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTT-SCEEEEE
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCC-CceEEEe
Confidence 34566788887654 699999999999 67 8899999999999999999874211 2345654
No 168
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.62 E-value=0.05 Score=39.17 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..|...|... ++.|..|||+++|+ ++..+.+.++.|...|++.+.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 45567778764 58999999999999 999999999999999999754
No 169
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.60 E-value=0.036 Score=43.01 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=48.2
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
+.|...|... +++|..+||+.+++ ++..+.++++.|...|++++..+.. ...-.+.+|+.++.+.
T Consensus 51 ~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 4456667665 48999999999999 9999999999999999998763110 0112477888776544
No 170
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=93.60 E-value=0.041 Score=46.07 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.+. .....+|||||||.|.++..++
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la 69 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAA 69 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHH
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHH
Confidence 4455544 4456799999999999988764
No 171
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.56 E-value=0.035 Score=40.59 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+++|..|||+.+++ ++..+.++++-|...|++...
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 47999999999999 999999999999999999543
No 172
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.54 E-value=0.032 Score=42.00 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=40.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|...|...++.+++|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEec
Confidence 3446777776541013999999999999 999999999999999999875
No 173
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.54 E-value=0.059 Score=40.62 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=41.8
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.++ ++.|..|||+++|+ ++..+.|-++.|...|++...
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 456788888875 58999999999999 999999999999999999764
No 174
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=93.53 E-value=0.07 Score=40.97 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=36.2
Q ss_pred hHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 39 EILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 39 d~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.+.+.| .|.|..|||+++|+ ++..+.+.|+.|...|++.+.
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHhC--CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 3455554 58999999999999 888999999999999999876
No 175
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=93.50 E-value=0.062 Score=36.28 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=40.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++.|+..|.++|. .+++..|||+++++ +..-+.++|+.|...|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3446677776431 48999999999999 999999999999999999854
No 176
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.46 E-value=0.21 Score=35.89 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=33.5
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..|...|...+ +++.|..|||+.+++ ++..+.++++.|...|++++.
T Consensus 44 ~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 44 GRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEee
Confidence 34566666642 148999999999999 999999999999999999875
No 177
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.46 E-value=0.034 Score=38.23 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=39.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+..|...|.+. ++.|+.||+++++.....++.-+.++|+-|+..|++.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 34466777664 589999999999851111578899999999999999986
No 178
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=93.46 E-value=0.042 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+++.++ .....+|+|||||.|.+++.++
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la 177 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAA 177 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHH
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHH
Confidence 345566555 4566899999999999988764
No 179
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.42 E-value=0.057 Score=40.20 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=41.7
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|.+.|.++ +++|..|||+++|+ ++..+.+-++.|...|++...
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 456688888875 59999999999999 999999999999999999854
No 180
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=93.35 E-value=0.073 Score=42.29 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 181 ILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 181 ~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
++..++......+|||||||.|.++..+++
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~ 66 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAG 66 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHT
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHh
Confidence 344443356778999999999999988763
No 181
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.33 E-value=0.086 Score=40.28 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+++.+. .....+|||||||.|.++..+++
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~ 72 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALAD 72 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHT
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHH
Confidence 3444443 34458999999999999988753
No 182
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.31 E-value=0.18 Score=32.66 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred hhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 38 FEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 38 fd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+.|.+. +..|+.+||+++|+ +..-+.|+|--|...|.+...
T Consensus 21 i~~L~~~---~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCC---cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 3355552 46999999999999 999999999999999999876
No 183
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=93.26 E-value=0.02 Score=43.63 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.7
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|+|||||.|.++..++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~ 84 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLS 84 (207)
T ss_dssp SSEEEEETCTTTTTHHHHH
T ss_pred CCeEEEECCCCCHHHHHHH
Confidence 5799999999999988765
No 184
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.17 E-value=0.085 Score=40.05 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=51.7
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceeccccccccc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYYV 106 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l~ 106 (210)
..++.|...|...+ ++++|..+||+.+++ ++..+.++++.|...|++++..... ...-.+.+|+.++.+.
T Consensus 41 ~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 41 SRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 34555677776521 158999999999999 9999999999999999998763110 1123478888887554
No 185
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=93.14 E-value=0.066 Score=41.16 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 181 ILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 181 ~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
++..++ .....+|+|||||.|.++..++
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la 74 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWC 74 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHH
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHH
Confidence 344555 6677899999999999998775
No 186
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=93.12 E-value=0.075 Score=40.50 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.++ .....+|+|||||.|.++..++
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la 96 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILA 96 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHH
Confidence 4455555 6778899999999999998775
No 187
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=93.09 E-value=0.066 Score=42.09 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..+.......+|||||||.|.++..++
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~ 65 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLA 65 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHH
Confidence 345555336667899999999999998775
No 188
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=93.07 E-value=0.059 Score=43.70 Aligned_cols=31 Identities=3% Similarity=-0.007 Sum_probs=22.7
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
...+++.++ . ...+|||||||.|.++..+++
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~ 102 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLD 102 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHT
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHH
Confidence 445566655 3 334999999999999988763
No 189
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=93.06 E-value=0.097 Score=38.24 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=45.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.... ++..+|..+
T Consensus 24 R~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~~ 87 (145)
T 2fe3_A 24 RHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYG-DASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCT-TSCCEEEEC
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeC-CCceEEECC
Confidence 345788887654 699999999999 56 888999999999999999987421 123347654
No 190
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=92.97 E-value=0.052 Score=43.99 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.3
Q ss_pred CCCeEEEecCCccHHHHh
Q 036188 190 NIKQLVDVGGSLGVTLQA 207 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~ 207 (210)
...+|||||||+|.++..
T Consensus 52 ~~~~VLDiG~GtG~~~~~ 69 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQ 69 (292)
T ss_dssp SEEEEEEETCTTSHHHHH
T ss_pred CCCeEEEEcCCCCHHHHH
Confidence 456899999999976543
No 191
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=92.95 E-value=0.055 Score=44.13 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=23.1
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++..+ .....+|+|||||.|.++..|+
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La 61 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVI 61 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHH
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHH
Confidence 4455555 6667899999999999998875
No 192
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=92.93 E-value=0.051 Score=42.07 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.0
Q ss_pred CCCCCeEEEecCCccHHHHhhhC
Q 036188 188 FDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
..+..+|||||||.|..+..+++
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~ 89 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALAL 89 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHT
T ss_pred hcCCCEEEEEcCCccHHHHHHHH
Confidence 34567999999999999988763
No 193
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=92.85 E-value=0.08 Score=40.98 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=23.4
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+. .....+|+|||||.|.++..++
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 89 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIA 89 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHH
Confidence 34555555 6677899999999999988765
No 194
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.79 E-value=0.12 Score=38.32 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=49.5
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhc-CCCCCCcccHHHHHHHHhcccceeeeccCC-C-ccc----ceecccccccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLL-TKNKDAPMMLDRILRLLASYSVVECSLDAS-G-ARR----LYSLNSVSKYY 105 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~-~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~-~~~----~y~~t~~s~~l 105 (210)
.++.|+..|-..+ .+..|+.||++.++ + +..-+.|-|+.|+..|++++..... . ..| .|.+|+.++.+
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 4455666665532 14689999999999 8 9999999999999999998653111 0 112 58888887744
Q ss_pred c
Q 036188 106 V 106 (210)
Q Consensus 106 ~ 106 (210)
.
T Consensus 105 l 105 (151)
T 3u1d_A 105 L 105 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=92.79 E-value=0.091 Score=43.86 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=21.2
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+.+... .....+|+|||||+|.++..++
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la 83 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAA 83 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHH
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHH
Confidence 3334333 4567899999999999988765
No 196
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=92.75 E-value=0.04 Score=42.30 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||.|.++..++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~ 64 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLL 64 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHH
Confidence 3457799999999999998775
No 197
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=92.71 E-value=0.074 Score=40.58 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=18.6
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+....+|||||||.|.++..++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~ 62 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAML 62 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHH
T ss_pred cCCCCcEEEECCCCCHHHHHHH
Confidence 4456799999999999998775
No 198
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=92.70 E-value=0.087 Score=41.31 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++.... .....+|||||||+|.++..++
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~ 60 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELA 60 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHH
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHH
Confidence 34455554 4566899999999999998775
No 199
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=92.70 E-value=0.031 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||+|.++..++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~ 76 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLV 76 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHH
Confidence 456799999999999998775
No 200
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=92.66 E-value=0.082 Score=45.89 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+. .....+|||||||.|.++..++
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA 261 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAA 261 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHH
Confidence 34556665 7778899999999999998775
No 201
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=92.63 E-value=0.068 Score=43.42 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++..+ .... +|+|||||.|.++..++
T Consensus 38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~ 65 (271)
T 3fut_A 38 RIVEAAR-PFTG-PVFEVGPGLGALTRALL 65 (271)
T ss_dssp HHHHHHC-CCCS-CEEEECCTTSHHHHHHH
T ss_pred HHHHhcC-CCCC-eEEEEeCchHHHHHHHH
Confidence 4555555 5556 99999999999998875
No 202
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=92.54 E-value=0.08 Score=41.64 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
....+|||||||.|..+..+++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~ 80 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQE 80 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTT
T ss_pred cCCCeEEEECCCccHHHHHHHH
Confidence 3467999999999999988753
No 203
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=92.49 E-value=0.065 Score=41.51 Aligned_cols=21 Identities=10% Similarity=0.136 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|||||.|.++..+.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~ 68 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQW 68 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHH
Confidence 457899999999999998773
No 204
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=92.46 E-value=0.069 Score=42.79 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|||||||.|.++..++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~ 76 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIA 76 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHH
Confidence 34555555 5667899999999999998775
No 205
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=92.46 E-value=0.052 Score=42.35 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.7
Q ss_pred HhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 183 ESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 183 ~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+.++ +....+|+|||||+|.++..++
T Consensus 68 ~~~~-~~~~~~VLDlGcG~G~~~~~la 93 (230)
T 1fbn_A 68 KVMP-IKRDSKILYLGASAGTTPSHVA 93 (230)
T ss_dssp CCCC-CCTTCEEEEESCCSSHHHHHHH
T ss_pred cccC-CCCCCEEEEEcccCCHHHHHHH
Confidence 3344 5677899999999999988765
No 206
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=92.43 E-value=0.1 Score=39.87 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.+. .....+|||||||.|.++..++
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 96 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTA 96 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHH
Confidence 4455555 6677899999999999988775
No 207
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=92.43 E-value=0.096 Score=41.22 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++...+ .....+|+|+|||+|.++..++
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~ 112 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLA 112 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHH
Confidence 35566666 7778899999999999998875
No 208
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.42 E-value=0.12 Score=43.67 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 25 LPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 25 ~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
...+++..-+..|++.|. . +++|..|||+++|+ .+.-+.++++-|...|++.+..
T Consensus 13 ~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp ---------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec
Confidence 345677777788999998 6 59999999999999 9999999999999999998863
No 209
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=92.42 E-value=0.088 Score=41.14 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=18.3
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
...+|||||||.|.++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~ 99 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLL 99 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTT
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 578999999999999988753
No 210
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=92.40 E-value=0.095 Score=42.96 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
..+++..+ .....+|||||||.|.++..+++
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~ 62 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLP 62 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTT
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHh
Confidence 44555555 66778999999999999988763
No 211
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.40 E-value=0.091 Score=37.60 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..|.++||+++++ ++..+.+.++.|...|+++..
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999885
No 212
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.39 E-value=0.28 Score=34.35 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhc--------CCCCCCc-ccHHHHHHHHhcccceeeeccC-C-Cccccee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLL--------TKNKDAP-MMLDRILRLLASYSVVECSLDA-S-GARRLYS 97 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~--------~~~~~~~-~~l~rlLr~L~~~gl~~~~~~~-~-~~~~~y~ 97 (210)
+.-..++-|...|.. +|.+..||++.+. + ++ ..+.+.|+-|...|+++..... . -..-.|+
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 344456667777877 6999999999994 6 89 9999999999999999875311 0 0112488
Q ss_pred ccccccccc
Q 036188 98 LNSVSKYYV 106 (210)
Q Consensus 98 ~t~~s~~l~ 106 (210)
+|+.++.+.
T Consensus 82 LT~~G~~~l 90 (118)
T 2esh_A 82 ITPQGKLYL 90 (118)
T ss_dssp ECHHHHHHH
T ss_pred EChHHHHHH
Confidence 888776443
No 213
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=92.36 E-value=0.1 Score=42.93 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+++..+ .....+|||||||.|.++..++
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La 69 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELA 69 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHH
Confidence 345566666 6677899999999999998875
No 214
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=92.35 E-value=0.088 Score=39.07 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=18.2
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|+|||.|.++..++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~ 63 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAV 63 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHH
T ss_pred hcCCCCEEEeCCccCHHHHHHH
Confidence 4456799999999999988764
No 215
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.21 E-value=0.11 Score=31.71 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=41.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
+-.|.+.|..+| |-+.++..|++.|+ +++-+..+||-|...|++.-
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445788888876 78999999999999 99999999999999999864
No 216
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=92.09 E-value=0.074 Score=41.18 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||+|.++..++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la 76 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLA 76 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHH
T ss_pred CCCCCEEEEECCcCCHHHHHHH
Confidence 5667899999999999887654
No 217
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=91.95 E-value=0.15 Score=44.10 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+. .....+|+|||||.|.+++.++
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA 192 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVA 192 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 45566666 7788899999999999998775
No 218
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=91.92 E-value=0.084 Score=40.90 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=17.7
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
...+|||||||.|.++..+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~ 62 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQE 62 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTT
T ss_pred CCCcEEEECCCCCHHHHHHHH
Confidence 456899999999999988753
No 219
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=91.91 E-value=0.12 Score=40.55 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++..++ +....+|||+|||.|.++..++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~ 115 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLA 115 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHH
Confidence 35666666 7788899999999999988775
No 220
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=91.91 E-value=0.22 Score=38.27 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.4
Q ss_pred CCeEEEecCCccHHHHhhhC
Q 036188 191 IKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~~ 210 (210)
..+|||||||.|.++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~ 67 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI 67 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC
T ss_pred CCcEEEeCCCCCHHHHHHHH
Confidence 67999999999999887753
No 221
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=91.80 E-value=0.084 Score=40.56 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||||||.|.++..++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la 60 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMA 60 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHH
T ss_pred CCCeEEEEccCcCHHHHHHH
Confidence 46789999999999998775
No 222
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=91.79 E-value=0.11 Score=40.50 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||+|.++..+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~ 79 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQ 79 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHH
T ss_pred CCCCeEEEEeccCCHHHHHHH
Confidence 446799999999999998775
No 223
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=91.77 E-value=0.13 Score=40.11 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++...+ .....+|+|||||.|.++..++
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~ 110 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLS 110 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHH
Confidence 4455565 6777899999999999998775
No 224
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=91.61 E-value=0.14 Score=36.84 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=39.9
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhc----CCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLL----TKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~----~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.... ++.|+.||++.++ + ++.-+.++|+-|...|++.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455666676522 5999999999998 7 899999999999999999986
No 225
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=91.52 E-value=0.23 Score=36.42 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHHhhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 31 AVYELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 31 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
+--+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+....+ +..+|..+
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK-SGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT-TEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC-CceEEEec
Confidence 334455788887754 699999999999 56 8889999999999999999864211 23357653
No 226
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.50 E-value=0.14 Score=34.78 Aligned_cols=52 Identities=29% Similarity=0.310 Sum_probs=40.5
Q ss_pred HHHHHHhhChhh-HHhhcCCCCCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 28 AIQAVYELGIFE-ILDKAGPGTKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 28 al~~a~~lglfd-~L~~~g~~~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+.-.++..|.+ .+.. | ..+ |..+||+++++ +...+++-|+.|...|++...
T Consensus 15 ~l~~~i~~~I~~~~l~~-g--~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-G--DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-T--SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCC-c--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 444455555555 3333 2 466 99999999999 999999999999999999876
No 227
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=91.47 E-value=0.12 Score=36.18 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=39.6
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..|...|.+. +|.|..|||+.++.....++.-+.++++-|...|++.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 345566667665 589999999999730011788999999999999999986
No 228
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=91.46 E-value=0.15 Score=39.43 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||+|.++..++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~ 67 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFG 67 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHG
T ss_pred CCCCeEEEeCCCCCHHHHHHH
Confidence 456799999999999998876
No 229
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=91.45 E-value=0.027 Score=44.73 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.8
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|..+..+++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~ 83 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMAR 83 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHT
T ss_pred cCCCEEEEecCCchHHHHHHHH
Confidence 4578999999999999988763
No 230
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=91.33 E-value=0.082 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||.|.++..++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la 65 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELS 65 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHG
T ss_pred CCCCeEEEEccCCcHHHHHHH
Confidence 456789999999999998876
No 231
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=91.29 E-value=0.19 Score=40.47 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=22.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+.+... +....+|||||||+|.++..+++
T Consensus 65 ~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~ 94 (265)
T 2oxt_A 65 WMEERGY-VELTGRVVDLGCGRGGWSYYAAS 94 (265)
T ss_dssp HHHHHTS-CCCCEEEEEESCTTSHHHHHHHT
T ss_pred HHHHcCC-CCCCCEEEEeCcCCCHHHHHHHH
Confidence 3444432 56678999999999999887753
No 232
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=91.29 E-value=0.083 Score=40.89 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+....+|+|+|||+|.++..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la 92 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVS 92 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHH
T ss_pred CCCCCEEEEEeccCCHHHHHHH
Confidence 5667899999999999988765
No 233
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=91.24 E-value=0.062 Score=41.92 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.1
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+....+|+|||||+|.++..++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la 96 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVS 96 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEEcccCCHHHHHHH
Confidence 5667899999999999988775
No 234
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=91.22 E-value=0.18 Score=40.84 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=22.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+.+... +....+|||||||+|.++..+++
T Consensus 73 ~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~ 102 (276)
T 2wa2_A 73 WIDERGG-VELKGTVVDLGCGRGSWSYYAAS 102 (276)
T ss_dssp HHHHTTS-CCCCEEEEEESCTTCHHHHHHHT
T ss_pred HHHHcCC-CCCCCEEEEeccCCCHHHHHHHH
Confidence 3344422 56678999999999999987753
No 235
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=91.17 E-value=0.081 Score=42.98 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+....+|||||||.|.++..++
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la 65 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIA 65 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHH
T ss_pred hcCCCcEEEeCCCCCHHHHHHH
Confidence 3457899999999999998875
No 236
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.13 E-value=0.16 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=43.0
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
-|.-|+.+|.++| +.+++..||+.++++ +...+.++|+.|...+++.+.
T Consensus 38 ~E~lVy~~I~~aG-n~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAG-NKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 4555788888866 268999999999999 999999999999999999876
No 237
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=91.11 E-value=0.15 Score=39.64 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 181 ILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 181 ~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
++.... +++ .+|||||||.|.++..++
T Consensus 59 ~~~~~~-~~~-~~vLDiGcG~G~~~~~l~ 85 (235)
T 3lcc_A 59 LVDTSS-LPL-GRALVPGCGGGHDVVAMA 85 (235)
T ss_dssp HHHTTC-SCC-EEEEEETCTTCHHHHHHC
T ss_pred HHHhcC-CCC-CCEEEeCCCCCHHHHHHH
Confidence 344443 443 499999999999998775
No 238
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=91.05 E-value=0.14 Score=40.32 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=21.2
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.++ -....+|+|+|||+|.++..++
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la 70 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLG 70 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHH
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHH
Confidence 3344443 3356799999999999988775
No 239
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=91.05 E-value=0.1 Score=38.09 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|+|||.|.++..++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~ 60 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAA 60 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHH
Confidence 46799999999999988765
No 240
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=91.02 E-value=0.16 Score=41.69 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=23.0
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++... .....+|+|||||.|.++..++
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la 94 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMS 94 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHH
Confidence 4455555 6677899999999999988765
No 241
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=90.96 E-value=0.13 Score=40.34 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
++.|..++|+++++ ++..+.|.++.|...|+|.+..+. ....+.+|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~--R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK--RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC--CeEEEEECHHHHHHH
Confidence 47899999999999 999999999999999999986210 145577888777554
No 242
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=90.88 E-value=0.18 Score=40.45 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++..++ +....+|||+|||+|.++..++
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la 131 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLA 131 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHH
Confidence 35566666 7778899999999999988775
No 243
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.87 E-value=0.25 Score=33.98 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q 036188 31 AVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLAS 79 (210)
Q Consensus 31 ~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~ 79 (210)
.+.++||+..|.. +++|-.|||+.+|+ +...+.|+=|.|..
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 4566899999988 68999999999999 99999999877754
No 244
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=90.82 E-value=0.17 Score=39.40 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.6
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||.|.++..++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la 75 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLS 75 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHH
Confidence 4566789999999999998775
No 245
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.64 E-value=0.11 Score=37.76 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
+++|..|||+.+++ ++..+.++++-|...|++++..
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee
Confidence 58999999999999 9999999999999999999763
No 246
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=90.59 E-value=0.2 Score=41.81 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=25.1
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..++.... |....+|+|+|||+|.++++++
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a 222 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAA 222 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHH
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHH
Confidence 445566666 8888999999999999998875
No 247
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=90.59 E-value=0.2 Score=39.79 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=19.8
Q ss_pred CC-CCCeEEEecCCccHHHHhhhC
Q 036188 188 FD-NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 188 ~~-~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.. ...+|||||||+|.++..+++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~ 69 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLST 69 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHT
T ss_pred CCCCCCEEEEcCCchhHHHHHHHH
Confidence 66 678999999999999988753
No 248
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.59 E-value=0.22 Score=42.39 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++..-+..|++.|.+. +++|..|||+++++ ++.-+.++++-|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 3334445578888876 59999999999999 999999999999999999885
No 249
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=90.55 E-value=0.088 Score=42.28 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~ 139 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLS 139 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHH
T ss_pred cCCCcEEEECCCCCHHHHHHH
Confidence 357899999999999998775
No 250
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=90.49 E-value=0.2 Score=40.38 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.7
Q ss_pred CCCCeEEEecCCc---cHHHHhh
Q 036188 189 DNIKQLVDVGGSL---GVTLQAI 208 (210)
Q Consensus 189 ~~~~~vvDiGGg~---G~~~~~l 208 (210)
.+..+|||||||. |.+...+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~ 98 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVA 98 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHH
Confidence 3568999999999 9876543
No 251
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.39 E-value=0.14 Score=40.30 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=41.5
Q ss_pred CCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 50 LSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
.+..+||+++++ ++..+.+.++-|...|++++. ....+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA-----GDRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe-----CCccEEECHHHHHHH
Confidence 345999999999 999999999999999999987 356788999887554
No 252
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=90.36 E-value=0.77 Score=28.03 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccc
Q 036188 40 ILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (210)
Q Consensus 40 ~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~ 101 (210)
.|+.-. .++|+.|+|+..++ +-+..+.-|.-|-..|-+.+. .-+|++-|.
T Consensus 11 ll~s~~--QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR------sSRYrlkph 60 (68)
T 3i71_A 11 LLTSVR--QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR------SSRYRLKPH 60 (68)
T ss_dssp HHHHCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------CCEEEECC-
T ss_pred HHHHHh--ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh------ccccccCcc
Confidence 444433 69999999999999 999999999999999999986 677876653
No 253
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=90.31 E-value=0.15 Score=40.50 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|||||+|.+++.++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la 139 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAE 139 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHH
Confidence 456799999999999988765
No 254
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=90.30 E-value=0.16 Score=41.65 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.0
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|.++.++++
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~ 103 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTR 103 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHT
T ss_pred CCCCEEEEEeCChhHHHHHHHh
Confidence 4578999999999999998864
No 255
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=90.16 E-value=0.1 Score=41.10 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||.|.++..++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la 68 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLS 68 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHH
T ss_pred CCCCCEEEEEcCCCCHHHHHHH
Confidence 3566899999999999998775
No 256
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=90.14 E-value=0.12 Score=38.70 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=17.0
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|+|||+|.++..++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~ 63 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEAL 63 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHH
Confidence 46799999999999988654
No 257
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=90.13 E-value=0.3 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..+ |..+||+++|+ +...+++-++.|...|+++..
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 456 89999999999 999999999999999999876
No 258
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=90.08 E-value=0.24 Score=35.82 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=46.6
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHhcCC-CCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQLLTK-NKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~-~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
.-+.-|++.|...+ ++.|++||.+.+.-+ +.++..-+.|-|+.|+..|++.+.... ++..+|..+
T Consensus 14 ~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~-~g~~~Y~~~ 79 (139)
T 3mwm_A 14 RQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTA-EGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECT-TSCEEEECC
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcC-CCceEEEEC
Confidence 34566788887754 699999999998410 112888999999999999999987421 123457654
No 259
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=90.03 E-value=0.11 Score=43.46 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||||||.|.++..++
T Consensus 66 ~~~~VLDvGcG~G~~~~~la 85 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAA 85 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHH
T ss_pred CCCEEEEEeccchHHHHHHH
Confidence 46799999999999988765
No 260
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=90.02 E-value=0.26 Score=40.44 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHhCCCCC-CCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFD-NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~-~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.+. .. ...+++|||||+|.++..++
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~ 104 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVML 104 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHH
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHH
Confidence 34566665 44 45799999999999997764
No 261
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=90.02 E-value=0.21 Score=42.34 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.5
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.++ .....+|+|||||.|.+++.++
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la 241 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLL 241 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHH
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHH
Confidence 3466665 4445899999999999998875
No 262
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=90.00 E-value=0.099 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|||||+|.+++.++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la 142 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVA 142 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHH
T ss_pred CCCEEEEEeCchhHHHHHHH
Confidence 35699999999999998875
No 263
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=89.99 E-value=0.18 Score=35.61 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=40.1
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
.|...+.. .|.++.|||+.+++ ++..+..+|+.|+..|.+.+. ..+.|-++
T Consensus 11 ~i~~~~~~----~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i-----~~~~~~~~ 61 (121)
T 2pjp_A 11 KAEPLFGD----EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI-----VKDRYYRN 61 (121)
T ss_dssp HHGGGCSS----SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEH
T ss_pred HHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----cCCceECH
Confidence 34455543 37799999999999 999999999999999999887 35555443
No 264
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=89.92 E-value=0.14 Score=39.67 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~ 72 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLS 72 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHH
Confidence 456799999999999988775
No 265
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=89.91 E-value=0.26 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.+++.++|++++++ ..|++..++.+|.++|++++.
T Consensus 29 ~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred CcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 689999999999994 578999999999999999987
No 266
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=89.87 E-value=0.17 Score=40.88 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.7
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|||||+|.+++.++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a 98 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAF 98 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHH
T ss_pred cCCCeEEEecccccHHHHHHH
Confidence 456799999999999988764
No 267
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=89.85 E-value=0.11 Score=41.31 Aligned_cols=20 Identities=15% Similarity=0.131 Sum_probs=15.6
Q ss_pred CCCCeEEEecCCccHHHHhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l 208 (210)
....+|||||||+|.++..+
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~ 73 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLA 73 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTT
T ss_pred CCCceEEEeCCCccHHHHHH
Confidence 45678999999999776543
No 268
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=89.75 E-value=0.15 Score=38.64 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~ 79 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAH 79 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHH
Confidence 456799999999999988764
No 269
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=89.73 E-value=0.37 Score=40.64 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=18.9
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||||||+|.++..++
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la 82 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSA 82 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHH
T ss_pred cCCCCEEEEeccCcCHHHHHHH
Confidence 5567899999999999988765
No 270
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=89.68 E-value=0.12 Score=38.96 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.8
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|||||||.|.++..++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~ 60 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLA 60 (203)
T ss_dssp CSCEEEETCTTCHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHH
Confidence 5699999999999988775
No 271
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=89.66 E-value=0.16 Score=41.78 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=19.4
Q ss_pred CCCCCeEEEecCCccHHHHhhhC
Q 036188 188 FDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+....+|||||||+|.++..+++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~ 102 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGG 102 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHh
Confidence 55668999999999999887763
No 272
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.51 E-value=0.55 Score=37.17 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=42.6
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
.-|.-.|.. ++.|+++||+.+|+ +++-+...|.-|...|++++. .+|+....
T Consensus 168 ~~l~~~l~~----~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~-----~~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN----GRATVEELSDRLNL----KEREVREKISEMARFVPVKII-----NDNTVVLD 219 (232)
T ss_dssp HHHHHHHHS----SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE-----TTTEEEEC
T ss_pred HHHHHHHhc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe-----cCCeEEec
Confidence 334445655 69999999999999 999999999999999999866 46666554
No 273
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=89.42 E-value=0.19 Score=39.71 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.1
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
...+|||||||.|.++..+++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~ 74 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQE 74 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHT
T ss_pred CCCeEEEeCCCcCHHHHHHHH
Confidence 567999999999999987753
No 274
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=89.39 E-value=0.23 Score=41.07 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++..++ .....+|||||||+|.++..++
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la 124 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLS 124 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHH
Confidence 4455555 6677899999999999988775
No 275
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=89.30 E-value=0.2 Score=38.15 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=17.9
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|||||||.|..+..+++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~ 76 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFAR 76 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHT
T ss_pred CCCEEEEEcCCccHHHHHHHH
Confidence 457999999999999988763
No 276
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=89.28 E-value=0.53 Score=33.60 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..+ |..+||+.+|+ +...+++-++.|...|++...
T Consensus 26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 566 89999999999 999999999999999999876
No 277
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=89.19 E-value=0.14 Score=38.79 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~ 61 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELF 61 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHH
Confidence 456799999999999988765
No 278
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=89.16 E-value=0.3 Score=35.94 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=40.3
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+-.|.++|.+ |+.|..+||+++|+ +-..+.-.|..|...|++.+.
T Consensus 13 k~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 13 LRDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 3457788884 79999999999999 999999999999999999887
No 279
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=89.12 E-value=0.4 Score=38.31 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.0
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++.++ ....+|+|||||+|.++..++
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la 128 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALA 128 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHH
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHH
Confidence 4445443 345799999999999998775
No 280
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=89.09 E-value=0.16 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|+|||.|.++..++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~ 68 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGAL 68 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHH
T ss_pred CCcCEEEEeeCCCCHHHHHHH
Confidence 456799999999999988765
No 281
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=89.08 E-value=0.15 Score=38.90 Aligned_cols=19 Identities=11% Similarity=-0.165 Sum_probs=16.2
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|||+|||+|.++..++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~ 72 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEAL 72 (201)
T ss_dssp TCEEEETTCTTCHHHHHHH
T ss_pred CCeEEEcCCccCHHHHHHH
Confidence 4699999999999988653
No 282
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=89.03 E-value=0.17 Score=42.09 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..+++.++ .....+|+|||||.|.++..++
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la 215 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFA 215 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHH
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHH
Confidence 45566664 4445799999999999998775
No 283
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=89.03 E-value=0.14 Score=40.66 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=21.1
Q ss_pred hCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 184 SYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 184 ~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.++ .+...+|+|||||+|.++..++
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la 96 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMS 96 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHH
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHH
Confidence 344 7788999999999999988775
No 284
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=89.00 E-value=0.22 Score=38.26 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.0
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|||||||.|..+..+++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~ 84 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGL 84 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHT
T ss_pred CCCEEEEeCCcchHHHHHHHH
Confidence 467999999999999988763
No 285
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.97 E-value=0.32 Score=38.13 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
+.+..+||+++++ ++..+.+.++-|...|++++. ....+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~-----~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVA-----SDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----CCCCeEECHHHHHHH
Confidence 4466999999999 999999999999999999987 456789999887654
No 286
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=88.94 E-value=0.14 Score=40.17 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.3
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+....+|+|||||+|..+..++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la 89 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIK 89 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHH
Confidence 4567899999999999887764
No 287
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=88.93 E-value=0.22 Score=38.21 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=18.6
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|..+..+++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~ 78 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLAR 78 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHT
T ss_pred hCCCEEEEecCCccHHHHHHHH
Confidence 3568999999999999988763
No 288
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=88.92 E-value=0.23 Score=38.73 Aligned_cols=22 Identities=18% Similarity=0.600 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|..+..+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~ 91 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFAS 91 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHT
T ss_pred cCCCEEEEEeCchhHHHHHHHH
Confidence 3567999999999999988763
No 289
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=88.92 E-value=0.18 Score=38.92 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~ 59 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFT 59 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHH
T ss_pred CCCCeEEEecccCCHHHHHHH
Confidence 446799999999999998775
No 290
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=88.89 E-value=0.72 Score=32.30 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh------cCCCCCCcccHHHHHHHHhcccceeeeccC-C--Ccccceec
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQL------LTKNKDAPMMLDRILRLLASYSVVECSLDA-S--GARRLYSL 98 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~--~~~~~y~~ 98 (210)
.++-.+++=|.-.|.+ +|.+--||++.+ ++ ++..+...|+-|...|+++..... + -..-.|++
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 3344445555666777 699999999998 67 999999999999999999875210 0 01123778
Q ss_pred ccccccc
Q 036188 99 NSVSKYY 105 (210)
Q Consensus 99 t~~s~~l 105 (210)
|+.++..
T Consensus 79 T~~G~~~ 85 (117)
T 4esf_A 79 NEAGRQE 85 (117)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 7777643
No 291
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.77 E-value=0.48 Score=39.23 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=43.9
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
+..|.+.|.+. +++|.+|||+++++ +++.++|-++.|...|++.+.. ....|.+.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~----~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----PGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----TTTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe----cCCCcEEee
Confidence 34567778653 58999999999999 9999999999999999986541 233576654
No 292
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=88.77 E-value=0.23 Score=38.22 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=18.2
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|||||||.|..+..+++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~ 78 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMAR 78 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 467999999999999988763
No 293
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=88.71 E-value=0.16 Score=38.36 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.3
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||.|.++..++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~ 70 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSY 70 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHH
T ss_pred CCCCCEEEEEeCCccHHHHHHH
Confidence 3456799999999999988764
No 294
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=88.69 E-value=0.59 Score=33.05 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=36.0
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceec
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~ 98 (210)
..+ |..+||+++|+ +..-+++-++.|...|++.... +.|.|..
T Consensus 35 ~~Lps~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----g~G~~V~ 78 (125)
T 3neu_A 35 DKLPSVREMGVKLAV----NPNTVSRAYQELERAGYIYAKR----GMGSFVT 78 (125)
T ss_dssp CBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEEC
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec----CCEEEEe
Confidence 456 69999999999 9999999999999999998763 3455543
No 295
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=88.62 E-value=0.21 Score=39.66 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||+|..++.++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la 99 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLK 99 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHH
Confidence 4567899999999999887664
No 296
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=88.61 E-value=0.16 Score=40.50 Aligned_cols=21 Identities=0% Similarity=-0.156 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|..+..|+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La 87 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFA 87 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHH
T ss_pred CCCCeEEEeCCCCcHHHHHHH
Confidence 356799999999999998775
No 297
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=88.60 E-value=0.17 Score=39.45 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.6
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|||||+|.++..++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la 97 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFA 97 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHH
T ss_pred CCCEEEECccccCHHHHHHH
Confidence 46799999999999998875
No 298
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=88.57 E-value=0.39 Score=34.13 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
..+ |..+||+++|+ +...+++-++.|...|++...
T Consensus 33 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKI----NPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 567 99999999999 999999999999999999876
No 299
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=88.50 E-value=0.31 Score=38.90 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.4
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~ 83 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYE 83 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHH
Confidence 456799999999998887654
No 300
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=88.49 E-value=0.25 Score=39.93 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.4
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|+|||||.|.++.++++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~ 95 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILK 95 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTT
T ss_pred CCCEEEEECCchHHHHHHHHh
Confidence 468999999999999998864
No 301
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=88.42 E-value=0.38 Score=37.11 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||.|.++..++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la 103 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFY 103 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHH
Confidence 4556799999999999988765
No 302
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=88.18 E-value=0.19 Score=38.38 Aligned_cols=19 Identities=16% Similarity=-0.095 Sum_probs=16.4
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|||+|||+|.++..++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~ 73 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEAL 73 (202)
T ss_dssp TCEEEETTCTTCHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHH
Confidence 4699999999999988754
No 303
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=88.12 E-value=0.3 Score=37.84 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKY 104 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~ 104 (210)
+|++..+||+++++ .+.-++..++.|...|+++.. .+...+|+.++.
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~------~~Gv~LTe~G~~ 75 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKE 75 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------CCCeEECHHHHH
Confidence 48999999999999 999999999999999999986 478888888763
No 304
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=88.09 E-value=0.95 Score=31.54 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh--------cCCCCCCcccHHHHHHHHhcccceeeeccC---CCcccc
Q 036188 27 MAIQAVYELGIFEILDKAGPGTKLSASDIAAQL--------LTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRL 95 (210)
Q Consensus 27 ~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~--------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~---~~~~~~ 95 (210)
+.++-..++=|...|.+ +|.+--||++.+ ++ ++..+.+.|+-|...|+++..... +-..-.
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 34444455556667877 699999999988 56 899999999999999999865210 001123
Q ss_pred eecccccccc
Q 036188 96 YSLNSVSKYY 105 (210)
Q Consensus 96 y~~t~~s~~l 105 (210)
|++|+.++..
T Consensus 79 Y~LT~~G~~~ 88 (116)
T 3f8b_A 79 YRLTEIGHEN 88 (116)
T ss_dssp EEECHHHHHH
T ss_pred EEECHHHHHH
Confidence 7777777643
No 305
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=87.95 E-value=0.34 Score=35.44 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHh--------cCCCCCCcccHHHHHHHHhcccceeeeccC---CCcccceeccc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQL--------LTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNS 100 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~--------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~---~~~~~~y~~t~ 100 (210)
-.++-|...|.+ +|++..||++.+ ++ ++..|.+.|+-|...|+++..... +-..-.|.+|+
T Consensus 41 ~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 41 YVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp THHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred cHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 345566667776 599999999988 47 999999999999999999865210 00112477777
Q ss_pred ccccc
Q 036188 101 VSKYY 105 (210)
Q Consensus 101 ~s~~l 105 (210)
.++.+
T Consensus 113 ~G~~~ 117 (145)
T 1xma_A 113 EGIKY 117 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 306
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=87.93 E-value=0.59 Score=32.77 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=51.7
Q ss_pred HHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhc------CCCCCCcccHHHHHHHHhcccceeeecc-CC--Ccccceec
Q 036188 28 AIQAVYELGIFEILDKAGPGTKLSASDIAAQLL------TKNKDAPMMLDRILRLLASYSVVECSLD-AS--GARRLYSL 98 (210)
Q Consensus 28 al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~------~~~~~~~~~l~rlLr~L~~~gl~~~~~~-~~--~~~~~y~~ 98 (210)
.+.-..++-|...|.+ +|.+.-||++.+. + ++..+.+.|+-|...|+++.... .+ ...-.|++
T Consensus 10 l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~l 81 (117)
T 3elk_A 10 ILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHI 81 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 4444556666777877 6999999999987 7 88999999999999999986521 00 01124888
Q ss_pred cccccccc
Q 036188 99 NSVSKYYV 106 (210)
Q Consensus 99 t~~s~~l~ 106 (210)
|+.++...
T Consensus 82 T~~G~~~l 89 (117)
T 3elk_A 82 TDAGKKFL 89 (117)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88887443
No 307
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=87.88 E-value=0.3 Score=35.35 Aligned_cols=35 Identities=6% Similarity=-0.018 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
...|.++||+++++ ++.-+.+++..|...|++...
T Consensus 50 ~~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999 999999999999999999874
No 308
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=87.83 E-value=0.27 Score=40.30 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.0
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|||||||.|.++..+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~ 115 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLR 115 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHh
Confidence 4568999999999999998764
No 309
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=87.77 E-value=0.41 Score=32.75 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.+ |..+||+++++ +...+++-|+.|...|++...
T Consensus 41 ~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 41 EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455 99999999999 999999999999999999876
No 310
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=87.77 E-value=0.22 Score=39.13 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|||||||+|..+..++
T Consensus 82 ~~~VLDiG~GtG~~t~~la 100 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFR 100 (236)
T ss_dssp CSEEEEECCTTSHHHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHH
Confidence 4699999999999988765
No 311
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=87.65 E-value=0.25 Score=38.02 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=18.9
Q ss_pred CCCCCeEEEecCC-ccHHHHhhh
Q 036188 188 FDNIKQLVDVGGS-LGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg-~G~~~~~l~ 209 (210)
.+...+|+||||| +|.++..++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la 75 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAE 75 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHH
T ss_pred cCCCCEEEEcCCCHHHHHHHHHH
Confidence 4567899999999 999988765
No 312
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=87.63 E-value=0.38 Score=37.00 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=18.5
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||.|.++..++
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la 99 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMA 99 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHH
Confidence 4566899999999999988765
No 313
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=87.52 E-value=0.22 Score=39.15 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=17.0
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||||||+|.++..++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la 84 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLG 84 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHH
Confidence 46799999999999887764
No 314
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=87.52 E-value=0.28 Score=39.61 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.3
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|+|||||.|.++..+++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~ 95 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQ 95 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTT
T ss_pred CCCeEEEEcCCcCHHHHHHHh
Confidence 467999999999999998764
No 315
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=87.38 E-value=0.45 Score=40.98 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhhC
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+++..+ ..+..+|+|+|||.|.++..+++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~ 306 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLAT 306 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHT
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHh
Confidence 3344444 55677999999999999988763
No 316
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=87.30 E-value=0.55 Score=36.75 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||.|..+..++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la 89 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTA 89 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHH
Confidence 456799999999999988775
No 317
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.29 E-value=0.33 Score=38.84 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=46.4
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
..|...|...+ ++++|..|||+.+++ ++..+.++++-|...|++++..+.. ...-...+|+.++.+
T Consensus 161 ~~vL~~L~~~~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~ 227 (250)
T 1p4x_A 161 FTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDH 227 (250)
T ss_dssp HHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHH
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHH
Confidence 34556666543 126999999999999 9999999999999999999763110 011125566665543
No 318
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=87.29 E-value=0.65 Score=39.77 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=44.6
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++..-+..|++.|... +++|..|||+++++ ++.-+.++++-|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 4554555688889886 59999999999999 999999999999999999886
No 319
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=87.16 E-value=0.28 Score=40.37 Aligned_cols=45 Identities=7% Similarity=-0.030 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 164 KHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 164 ~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..|...+...+......+....+ .....+|+|+|||+|..+..++
T Consensus 93 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la 137 (315)
T 1ixk_A 93 PEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLA 137 (315)
T ss_dssp HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHH
T ss_pred hhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 34554443333332233334444 6677899999999999988775
No 320
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=87.09 E-value=0.35 Score=40.35 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.5
Q ss_pred CCCCCeEEEecCCccHHHHhhhC
Q 036188 188 FDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
..+..+|||||||.|.++..+++
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~ 140 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVAR 140 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTT
T ss_pred CCCCCEEEEECCCccHHHHHHHH
Confidence 34578999999999999998864
No 321
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=87.00 E-value=0.49 Score=40.22 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..++.... |.....|+|++||+|.++++.+
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa 214 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAA 214 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHH
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHH
Confidence 445566666 8888999999999999998764
No 322
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=86.97 E-value=0.24 Score=44.24 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||.|.++..++
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la 85 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLA 85 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHH
Confidence 456799999999999998875
No 323
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=86.93 E-value=0.55 Score=33.57 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=36.8
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceec
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~ 98 (210)
..+ |..+||+.+|+ +..-+++-++.|...|+++... +.|.|-.
T Consensus 36 ~~LPser~La~~~gV----Sr~tVReAl~~L~~eGlv~~~~----g~G~~V~ 79 (134)
T 4ham_A 36 EKILSIREFASRIGV----NPNTVSKAYQELERQEVIITVK----GKGTFIA 79 (134)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEEC
T ss_pred CCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEc----CcEEEEe
Confidence 466 88999999999 9999999999999999998763 4566654
No 324
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=86.93 E-value=0.42 Score=37.38 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=17.5
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|||||||.|.++..++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~ 75 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSA 75 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTG
T ss_pred cCCCEEEEECCCccHHHHHHh
Confidence 456799999999999887764
No 325
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=86.80 E-value=0.32 Score=39.66 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=18.2
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|+|||||.|.++..+++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~ 110 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLK 110 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTT
T ss_pred CCCEEEEEcCCcCHHHHHHHh
Confidence 357999999999999998864
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.76 E-value=0.54 Score=33.74 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=43.5
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceec
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~ 98 (210)
+.-|++.|...+ +++.|++||.+.+ ++ +..-+.|-|+.|+..|++.+.... ++..+|..
T Consensus 20 R~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~ 83 (136)
T 1mzb_A 20 RVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFD-GGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSS-SSSCEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeC-CCceEEEe
Confidence 344778886531 1489999999999 56 888999999999999999987321 12345764
No 327
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=86.75 E-value=0.34 Score=41.93 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=45.8
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
.|...|.+.+ ++++|..|||+++++ ++..+.|+++-|...|++++..+.. ...-...+|+.++.+
T Consensus 408 ~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 408 YILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHH
T ss_pred HHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHH
Confidence 3555666541 148999999999999 9999999999999999998763110 111235566655443
No 328
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=86.74 E-value=0.35 Score=38.80 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=18.8
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|+|||||.|.++.++++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~ 92 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFK 92 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTT
T ss_pred CCCCEEEEEeCCcCHHHHHHHh
Confidence 4568999999999999988764
No 329
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=86.71 E-value=0.66 Score=41.70 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=48.9
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhc-----ccceeeeccCCCcccceecccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLAS-----YSVVECSLDASGARRLYSLNSVSK 103 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~-----~gl~~~~~~~~~~~~~y~~t~~s~ 103 (210)
+.-|...|... +.+|..+||+.+++ +++.+++.|+.|+. .|+++.. .+.|.+++...
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~------g~~y~L~~~~~ 493 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH------DGVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE------TTEEEECHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe------CCEEEECHHHH
Confidence 34577778776 48999999999999 99999999999999 8999997 47899998644
No 330
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=86.67 E-value=0.31 Score=39.56 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=18.8
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||.|.++..++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la 137 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALD 137 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSC
T ss_pred CCCCCEEEEecCCCCHHHHHHH
Confidence 4567899999999999998773
No 331
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=86.64 E-value=0.82 Score=37.94 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYY 105 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l 105 (210)
+..|.+.|.++. |.++|.++||+++|+ +...+.+-++.|...|+..+.. ....|++.+....|
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~----~~~GY~L~~~~~~l 67 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV----NHKGHLLQQLPDIW 67 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEECCSSC
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe----CCCeEEEecCcccC
Confidence 345777785431 158999999999999 9999999999999999966541 24568877644433
No 332
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.61 E-value=0.13 Score=43.07 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYV 106 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~ 106 (210)
+..|...|... +++|..|||+++++ ++.-++|.|+.|...|+++.. .....+|+.++.+.
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~------~~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS------KSGMTLTERGLEVY 81 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------ecceEEcHHHHHHH
Confidence 45566777665 59999999999999 999999999999999999743 23356666665433
No 333
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=86.58 E-value=0.33 Score=40.13 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.3
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|+|||||.|.++.++++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~ 136 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCK 136 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTT
T ss_pred CCCEEEEEcCCccHHHHHHHH
Confidence 457999999999999998764
No 334
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=86.47 E-value=0.49 Score=36.73 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=16.8
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..+|||||||.|..+..++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la 75 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYIL 75 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHH
Confidence 34599999999999988775
No 335
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=86.45 E-value=0.32 Score=37.35 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.4
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|||||.|..+..++
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la 96 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFA 96 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHH
T ss_pred CCCCCEEEEEcCCcCHHHHHHH
Confidence 4556799999999999988765
No 336
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=86.43 E-value=0.56 Score=39.97 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=25.1
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..++.... |.+...|+|.+||+|.++++.+
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa 220 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAA 220 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHH
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHH
Confidence 445566666 8888999999999999998764
No 337
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=86.41 E-value=0.36 Score=38.16 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.0
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
++...+|+|||||+|.++..++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la 95 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVS 95 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHH
Confidence 6678999999999999887664
No 338
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=86.40 E-value=0.37 Score=39.68 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|+|||||.|.++..+++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~ 97 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLK 97 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT
T ss_pred CCCCeEEEEcCCcCHHHHHHHh
Confidence 3467999999999999998864
No 339
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=86.39 E-value=0.71 Score=34.67 Aligned_cols=62 Identities=21% Similarity=0.413 Sum_probs=47.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh--------cCCCCCCcccHHHHHHHHhcccceeeeccCC-C--cccceeccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL--------LTKNKDAPMMLDRILRLLASYSVVECSLDAS-G--ARRLYSLNSVS 102 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~--------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~--~~~~y~~t~~s 102 (210)
++-|...|.. +|++.-||++.+ ++ ++..+.+.|+-|...|+++...... + ..-.|++|+.+
T Consensus 4 ~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G 75 (179)
T 1yg2_A 4 PHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAG 75 (179)
T ss_dssp HHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHH
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHH
Confidence 4456667877 699999999999 57 8999999999999999998653110 0 12359999988
Q ss_pred c
Q 036188 103 K 103 (210)
Q Consensus 103 ~ 103 (210)
+
T Consensus 76 ~ 76 (179)
T 1yg2_A 76 R 76 (179)
T ss_dssp H
T ss_pred H
Confidence 6
No 340
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=86.31 E-value=0.37 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|+|||||.|.++..+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~ 98 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCK 98 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTT
T ss_pred CCCCeEEEEeCCcCHHHHHHHH
Confidence 4568999999999999998864
No 341
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=86.28 E-value=0.36 Score=41.11 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=44.1
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
..|++.|.. +|.++++|+.++|+ +...+...|-.|.-.|++... ..++|+++
T Consensus 331 ~~vl~~l~~----~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~-----~Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP----SPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH-----GGSLVSLS 382 (382)
T ss_dssp HHHHHHCCS----SCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC-----TTSEEEC-
T ss_pred HHHHHhhCC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC-----CCceEecC
Confidence 357788865 69999999999999 999999999999999999987 46677653
No 342
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=86.22 E-value=0.37 Score=39.52 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.6
Q ss_pred CCCCCeEEEecCCccHHHHhhhC
Q 036188 188 FDNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
..+..+|||||||.|.++..+++
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~ 115 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVK 115 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTT
T ss_pred CCCCCEEEEECCCchHHHHHHHH
Confidence 34668999999999999998864
No 343
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=86.20 E-value=0.31 Score=38.05 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.7
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||.|..+..++
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la 79 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFA 79 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHH
Confidence 346799999999999988775
No 344
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=86.06 E-value=0.42 Score=37.21 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.9
Q ss_pred CCCeEEEecCCccHHHHhhhC
Q 036188 190 NIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~~ 210 (210)
+..+|||||||.|..+..+++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~ 92 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMAL 92 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHH
Confidence 457999999999999988763
No 345
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=86.01 E-value=0.28 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.5
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..+|||||||.|..+..++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la 79 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMS 79 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHH
Confidence 46799999999999988775
No 346
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=85.99 E-value=0.32 Score=37.67 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=17.3
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||||||.|..+..++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la 73 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMA 73 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 46799999999999988765
No 347
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=85.96 E-value=0.31 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.1
Q ss_pred CCeEEEecCCccHHHHhh
Q 036188 191 IKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l 208 (210)
.++|||||||+|.+++-.
T Consensus 84 ~k~VLDvG~GtGiLs~~A 101 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFC 101 (376)
T ss_dssp TCEEEEETCTTSHHHHHH
T ss_pred CCEEEEeCCCccHHHHHH
Confidence 568999999999987643
No 348
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=85.68 E-value=0.53 Score=32.36 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=46.4
Q ss_pred HHhhChhhHHhhcCCCCCCCHHHHHHHh----cCCCCCCcccHHHHHHHHhcccceeeeccC-CC-cccceecccccccc
Q 036188 32 VYELGIFEILDKAGPGTKLSASDIAAQL----LTKNKDAPMMLDRILRLLASYSVVECSLDA-SG-ARRLYSLNSVSKYY 105 (210)
Q Consensus 32 a~~lglfd~L~~~g~~~~~t~~eLA~~~----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~-~~~~y~~t~~s~~l 105 (210)
..++-|...|.+ +|.+--+|++.+ ++ ++..+.+.|+-|...|+++..... ++ ..-.|++|+.++..
T Consensus 9 ~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~ 80 (108)
T 3l7w_A 9 LIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKH 80 (108)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHH
Confidence 345556667777 588888888885 78 999999999999999999875210 00 01137777776543
No 349
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=85.38 E-value=0.77 Score=37.38 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+.+.+. +....+|||+|||.|.++...+
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa 109 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAA 109 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHH
Confidence 345566665 7777799999999999988544
No 350
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=85.30 E-value=0.94 Score=35.62 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 47 GTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 47 ~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
|..++..+||+.+|+ +...+++-|+.|...|+++..
T Consensus 47 G~~L~e~~La~~lgV----Sr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 47 GTALRQQELATLFGV----SRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp TCBCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCeeCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 468999999999999 999999999999999999976
No 351
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=85.16 E-value=0.33 Score=38.41 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|||||.|.++..++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~ 104 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFA 104 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHH
Confidence 456799999999999988765
No 352
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=85.12 E-value=0.48 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.7
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+..+|+|||||.|..+..+++
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~ 128 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLK 128 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTT
T ss_pred CCCCEEEEEcCCcCHHHHHHHH
Confidence 3467999999999999998864
No 353
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=84.91 E-value=1.2 Score=28.23 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=39.9
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+-.|+++|..+ ||.++-.||+.+|++ ...-+.+-|-.|...|++..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 55689999987 599999999999993 444599999999999999654
No 354
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=84.79 E-value=0.39 Score=37.97 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|||||||.|..+..++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la 98 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATA 98 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHH
T ss_pred hCcCEEEEeCCCcCHHHHHHH
Confidence 346799999999999988775
No 355
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=84.35 E-value=0.77 Score=39.01 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=25.6
Q ss_pred hHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 177 VMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 177 ~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..++.... |.....|+|.+||+|.++++.+
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa 213 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAA 213 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHH
Confidence 3445566666 8888999999999999998764
No 356
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=84.09 E-value=0.44 Score=38.97 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.5
Q ss_pred CCCeEEEecCCccHHHHh
Q 036188 190 NIKQLVDVGGSLGVTLQA 207 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~ 207 (210)
...+|||||||.|..+..
T Consensus 48 ~~~~VLDlGCG~G~~l~~ 65 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEK 65 (302)
T ss_dssp SCCEEEETTCTTTTTHHH
T ss_pred CCCeEEEEecCCcHhHHH
Confidence 467999999999976544
No 357
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=84.08 E-value=0.5 Score=39.81 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=19.2
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
|....+|+|+|||+|.+++.++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a 236 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELA 236 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHH
T ss_pred cCCCCEEEEccCcCcHHHHHHH
Confidence 5667899999999999998875
No 358
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=84.08 E-value=0.68 Score=42.07 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=33.6
Q ss_pred CchhHhhccCchHHHHHHHHHhhhhhhhHHHHHHhCCC---CCCCCeEEEecCCccHHHH
Q 036188 150 VHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKG---FDNIKQLVDVGGSLGVTLQ 206 (210)
Q Consensus 150 ~~~fe~l~~~p~~~~~f~~~M~~~~~~~~~~~l~~~~~---~~~~~~vvDiGGg~G~~~~ 206 (210)
..-||.+++||..-..|.+|+.. .+.+..+. -.+...|+|||+|+|-++.
T Consensus 321 s~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~ 373 (637)
T 4gqb_A 321 SQTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVN 373 (637)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHH
T ss_pred hhhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHH
Confidence 35678888999887788877652 22222110 2345679999999998854
No 359
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=83.98 E-value=0.95 Score=36.75 Aligned_cols=29 Identities=14% Similarity=-0.037 Sum_probs=21.8
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+.+... ++...+|||+|||.|.++..++
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa 93 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAA 93 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHH
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHH
Confidence 4445543 6677799999999999998543
No 360
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=83.97 E-value=0.39 Score=38.69 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+...+|+|+|||+|.++..++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la 144 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIA 144 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHH
T ss_pred CCCCEEEEecccCCHHHHHHH
Confidence 456899999999999998765
No 361
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=83.96 E-value=0.43 Score=40.24 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.2
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||||||+|.++..++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la 102 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLAS 102 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHH
T ss_pred CCCEEEEecCccCHHHHHHH
Confidence 56799999999999887764
No 362
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=83.69 E-value=0.4 Score=38.47 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.0
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+.+..+|+|+|||.|.++..++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la 138 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLA 138 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHH
T ss_pred cCCCCEEEEecCcCCHHHHHHH
Confidence 5667899999999999998775
No 363
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=83.46 E-value=1.3 Score=30.91 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHhhChhhHHhhcCCCCCCCHHHHHHHh------cCCCCCCcccHHHHHHHHhcccceeeeccC-CC--cccceecc
Q 036188 29 IQAVYELGIFEILDKAGPGTKLSASDIAAQL------LTKNKDAPMMLDRILRLLASYSVVECSLDA-SG--ARRLYSLN 99 (210)
Q Consensus 29 l~~a~~lglfd~L~~~g~~~~~t~~eLA~~~------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~--~~~~y~~t 99 (210)
++-..++=|...|.+ +|.+--||++.+ ++ ++..+...|+-|...|+++..... +. ..-.|++|
T Consensus 10 ~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 10 LKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 333344445666777 699999999998 57 999999999999999999865210 00 11247788
Q ss_pred cccccc
Q 036188 100 SVSKYY 105 (210)
Q Consensus 100 ~~s~~l 105 (210)
+.++..
T Consensus 82 ~~G~~~ 87 (116)
T 3hhh_A 82 SSGEAE 87 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777643
No 364
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=83.37 E-value=0.77 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcc
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASY 80 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~ 80 (210)
+.|..+||+.+|+ ++.-+.++++.....
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPVSY 48 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCSTTT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHHhc
Confidence 6899999999999 999999988754433
No 365
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=83.12 E-value=0.44 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.0
Q ss_pred CCCeEEEecCCccHHHH
Q 036188 190 NIKQLVDVGGSLGVTLQ 206 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~ 206 (210)
...+|||||||+|.+..
T Consensus 71 ~~~~vLDiGcG~G~~~~ 87 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL 87 (289)
T ss_dssp CCSEEEEETCTTCCGGG
T ss_pred CCCeEEEECCCcChHHH
Confidence 56799999999998543
No 366
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=83.11 E-value=0.97 Score=32.80 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=40.0
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCC-CCCCcccHHHHHHHHhcccceeeec
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTK-NKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~-~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
-+.-|++.|... ++.|++||.+.+.-. +.++..-+.|-|+.|+..|++.+..
T Consensus 20 qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 20 QRQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 344577788775 389999999988321 1227889999999999999999874
No 367
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.07 E-value=0.89 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhccccee-ee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVE-CS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~-~~ 86 (210)
+++|.+|||+++++ ++.-++|.|..|...|++. +.
T Consensus 20 ~~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGI----YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEEe
Confidence 58999999999999 9999999999999999997 65
No 368
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=82.93 E-value=0.64 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.8
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
....+|||||||.|.++..+++
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr 741 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLD 741 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTS
T ss_pred cCCCEEEEECCCCCHHHHHHHH
Confidence 3578999999999999988763
No 369
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.46 E-value=0.77 Score=33.56 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=42.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceec
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSL 98 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~ 98 (210)
+.-|++.|...+ +++.|++||.+.+ ++ +..-+.|-|+.|+..|++.+.... ++..+|..
T Consensus 19 R~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~-~~~~~Y~~ 82 (150)
T 2w57_A 19 RLKILEVLQQPE-CQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRHHFE-GGKSVFEL 82 (150)
T ss_dssp HHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEECG-GGCEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEEEeC-CCceEEEe
Confidence 344677776531 0389999999999 56 888999999999999999976311 02235764
No 370
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=82.33 E-value=1.1 Score=34.61 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 46 PGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 46 ~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
||..++-.+||+++|+ +...++.-|+.|...|+++..
T Consensus 32 pG~~L~e~~La~~lgV----SRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGI----SFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp TTCEECHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCEeCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3468999999999999 999999999999999999876
No 371
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=82.19 E-value=1.2 Score=40.89 Aligned_cols=50 Identities=8% Similarity=-0.002 Sum_probs=33.8
Q ss_pred CchhHhhccCchHHHHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHH
Q 036188 150 VHIFEYAGLNPRFNKHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQ 206 (210)
Q Consensus 150 ~~~fe~l~~~p~~~~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~ 206 (210)
..-||.+.+|+.+-+.|.+++... +.+..++-.+...|+|||||+|-++.
T Consensus 376 s~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~ 425 (745)
T 3ua3_A 376 SGVYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGT 425 (745)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHH
T ss_pred hHHHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHH
Confidence 356777888888888888877642 22222111245689999999999964
No 372
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=82.17 E-value=0.41 Score=38.42 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|+|||+|..+..++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la 102 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLA 102 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHH
T ss_pred CCCcCEEEEeCCCccHHHHHHH
Confidence 5567899999999999987765
No 373
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=82.08 E-value=0.71 Score=36.97 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=17.7
Q ss_pred CCCCCeEEEecCCccHHHHhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l 208 (210)
+....+|+|||||.|-++..+
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~ 123 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYE 123 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHH
T ss_pred CCCCCeEEEecCCccHHHHHh
Confidence 455789999999999998764
No 374
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=81.57 E-value=0.51 Score=40.03 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|||||.|.++..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la 252 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLA 252 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHH
T ss_pred CCCEEEEEeeeCCHHHHHHH
Confidence 45799999999999998775
No 375
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=81.44 E-value=1.4 Score=34.27 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 47 GTKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 47 ~~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
|..+ |-.+||+++|+ +...++.-|+.|...|+++... +.|.|...
T Consensus 28 G~~LPsE~eLa~~~gV----SR~tVReAL~~L~~eGlv~~~~----g~G~~V~~ 73 (239)
T 1hw1_A 28 GTILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQH----GKPTKVNN 73 (239)
T ss_dssp TSBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TEEEEECC
T ss_pred CCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEec----CCCcEeeC
Confidence 4678 89999999999 9999999999999999998763 45666654
No 376
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=81.20 E-value=0.6 Score=37.36 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.2
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|||+|||.|.+++.++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA 102 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLA 102 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHH
Confidence 3445799999999999998775
No 377
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=80.93 E-value=0.4 Score=34.02 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
..+ |..+||+.+|+ +...+++-++.|...|++.... +.|.|...
T Consensus 33 ~~lPs~~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----~~G~~V~~ 77 (126)
T 3ic7_A 33 GRIPSVREYASIVEV----NANTVMRSYEYLQSQEVIYNKR----GIGFFVAS 77 (126)
T ss_dssp SEECCTTTTTTCC-C----CSGGGHHHHHHHHTTTSEEEET----TTEEEECT
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEEc----CCccEEcc
Confidence 456 88999999999 9999999999999999998763 34555543
No 378
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=80.82 E-value=3.6 Score=28.98 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=34.4
Q ss_pred HHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q 036188 30 QAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLAS 79 (210)
Q Consensus 30 ~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~ 79 (210)
..+-++.|+..|.+ +.|..|||+++|+ ...-+.|+-|.|..
T Consensus 61 aLs~R~eV~klL~~-----G~syreIA~~~g~----S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ-----GYTYATIEQESGA----STATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHHHHHH-----TCCHHHHHHHHCC----CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHCC----CHHHHHHHHHHHhc
Confidence 34445889999988 5999999999999 99999998887753
No 379
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=80.73 E-value=1.6 Score=32.93 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=32.6
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 169 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGS----HREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC
Confidence 7899999999999 999999999999999999875
No 380
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=80.64 E-value=1.4 Score=32.87 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+++.|...|+++..
T Consensus 164 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGC----SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999875
No 381
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=80.54 E-value=2 Score=31.84 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=44.0
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCC---CCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTK---NKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~---~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
+.-|++.|.+.+ ++.|++||-+.+.-+ +.++..-+.|-|+.|+..|++.+.... .+..+|..+
T Consensus 35 R~~IL~~L~~~~--~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~-~~~~~Y~~~ 100 (162)
T 4ets_A 35 REVLLKTLYHSD--THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFG-SAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHSCC--SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC------CCEEEC
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeC-CCceEEEeC
Confidence 455788887764 699999999877420 223788999999999999999986311 123357654
No 382
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=80.43 E-value=3 Score=34.18 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCCCeEEEecCCccHHH
Q 036188 188 FDNIKQLVDVGGSLGVTL 205 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~ 205 (210)
.....+|+|||||+|.++
T Consensus 120 l~~g~rVLDIGcG~G~~t 137 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLT 137 (298)
T ss_dssp CCTTCEEEEECCCSSCHH
T ss_pred CCCcCEEEEECCCccHHH
Confidence 678899999999998654
No 383
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=80.21 E-value=1.5 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 146 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVGS----VRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC
Confidence 5899999999999 999999999999999999875
No 384
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=79.99 E-value=2.3 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=32.6
Q ss_pred hhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 38 FEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 38 fd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
.+.|.++-.+.+.|+++||+.+|+ +++.+.|+++......+-..
T Consensus 9 ~~~i~~~~~~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~ 52 (107)
T 2k9s_A 9 CQYISDHLADSNFDIASVAQHVCL----SPSRLSHLFRQQLGISVLSW 52 (107)
T ss_dssp HHHHHHTSSCSSCCHHHHHHHTTS----CHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHCcCHHHH
Confidence 344544321148999999999999 99999999988776665543
No 385
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=79.81 E-value=2.2 Score=28.54 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhccccee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVE 84 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~ 84 (210)
.+.|+++||+.+|+ +++.+.|+++......+-.
T Consensus 18 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~g~s~~~ 50 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL----SSGYLSIMFKKNFGIPFQD 50 (103)
T ss_dssp TTCCHHHHHHHTTC----CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHH
Confidence 48999999999999 9999999999877665544
No 386
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=79.68 E-value=0.66 Score=37.67 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=17.6
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|||||.|-++..+.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~ 151 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWM 151 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTT
T ss_pred CCCceeeeeccCccHHHHHHH
Confidence 357899999999999987654
No 387
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=79.50 E-value=1.8 Score=34.01 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 46 PGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 46 ~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
||..++-.+||+++|+ +...++.-|+.|...|+++..
T Consensus 48 pG~~L~e~~La~~lgV----SRtpVREAL~~L~~eGlv~~~ 84 (239)
T 2hs5_A 48 PGARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE 84 (239)
T ss_dssp TTCEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCEeCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3468899999999999 999999999999999999876
No 388
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=79.48 E-value=0.68 Score=38.38 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.7
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|||||||.|.++..++
T Consensus 90 ~~rVLdIG~G~G~la~~la 108 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFA 108 (317)
T ss_dssp GCEEEEESCGGGHHHHHHH
T ss_pred CCEEEEEECCcCHHHHHHH
Confidence 3499999999999998876
No 389
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=79.45 E-value=2.3 Score=33.24 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
+++|+.+||+.+|+ +.......|..+...|++..++
T Consensus 167 g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 167 GSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 69999999999999 9999999999999999999873
No 390
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=79.37 E-value=1.6 Score=32.60 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 167 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEeC
Confidence 6899999999999 999999999999999999976
No 391
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=79.36 E-value=1.8 Score=32.94 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 175 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSS----SRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEec
Confidence 6899999999999 999999999999999999875
No 392
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=79.36 E-value=2 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=28.6
Q ss_pred hhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccce
Q 036188 38 FEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVV 83 (210)
Q Consensus 38 fd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~ 83 (210)
...+... ++.|++||++.+ ++ +..-++|-|. ..|++
T Consensus 11 ~~ll~~~---~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSN---EIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHS---CCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcC---CCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445553 589999999999 88 8888888888 56777
No 393
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=79.14 E-value=2.3 Score=33.94 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.7
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.-.|...+...|- .|-.+.||++.+++ ++..++.+|+.|+..|.+.+.
T Consensus 142 ~~~~i~~~~~~~g~-~pp~~~dl~~~l~~----~~~~~~~~l~~l~~~g~lv~l 190 (258)
T 1lva_A 142 LLKDLEDKYRVSRW-QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI 190 (258)
T ss_dssp HHHHHHHHHHHHTT-SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHHCCC-CCCCHHHHHhHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 33445556655321 26689999999999 999999999999999999887
No 394
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=78.96 E-value=1.9 Score=32.83 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
-++|-++||..+|+ .+..+.|+++.|...|+++..
T Consensus 179 ~~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 179 IYLSREELATLSNM----TVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeC
Confidence 37899999999999 999999999999999999876
No 395
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=78.90 E-value=1.8 Score=32.51 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|++.-|...|++...
T Consensus 163 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGT----SRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999875
No 396
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=78.79 E-value=1.7 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 187 ~lt~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 187 RVSRQELARLVGC----SREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEEC
Confidence 5799999999999 999999999999999999876
No 397
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=78.69 E-value=1.4 Score=30.71 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=45.2
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhc------CCCCCCcccHHHHHHHHhcccceeeeccC-C-C-cccceecccccccc
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLL------TKNKDAPMMLDRILRLLASYSVVECSLDA-S-G-ARRLYSLNSVSKYY 105 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~------~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~-~-~~~~y~~t~~s~~l 105 (210)
+=|...|.+ +|.+--||++.+. + ++..+.+.|+-|...|+++..... + + ..-.|++|+.++..
T Consensus 12 ~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~ 83 (115)
T 4esb_A 12 GCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQ 83 (115)
T ss_dssp HHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHH
Confidence 335556776 6999999999985 7 899999999999999999865210 0 0 11237777777643
No 398
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=78.62 E-value=2 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 177 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGA----SRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999876
No 399
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=78.60 E-value=2.1 Score=33.14 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 193 ~lt~~~lA~~lG~----sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGS----TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999976
No 400
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=78.46 E-value=1.1 Score=37.95 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.1
Q ss_pred CCCCeEEEecCCccHHHHhhhC
Q 036188 189 DNIKQLVDVGGSLGVTLQAITT 210 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~~ 210 (210)
.+.++|+|||||.|.++.++++
T Consensus 187 p~pkrVL~IGgG~G~~arellk 208 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVK 208 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHH
Confidence 3678999999999999998764
No 401
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=78.45 E-value=2.1 Score=34.51 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=11.9
Q ss_pred CCeEEEecCCccH
Q 036188 191 IKQLVDVGGSLGV 203 (210)
Q Consensus 191 ~~~vvDiGGg~G~ 203 (210)
..+|+|+|||+|.
T Consensus 106 ~~rIld~GCgTGe 118 (274)
T 1af7_A 106 EYRVWSAAASTGE 118 (274)
T ss_dssp CEEEEESCCTTTH
T ss_pred CcEEEEeeccCCh
Confidence 4689999999998
No 402
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=78.19 E-value=2.5 Score=33.16 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
..+ |..+||++.|+ +..-+++-|+.|...|++.... +.|.|-..+
T Consensus 31 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----g~G~~V~~~ 76 (236)
T 3edp_A 31 MLMPNETALQEIYSS----SRTTIRRAVDLLVEEGLVVRKN----GVGLYVQPK 76 (236)
T ss_dssp C--CCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEECCC
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEC----CceEEEccC
Confidence 567 89999999999 9999999999999999999874 466666554
No 403
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=78.15 E-value=2.6 Score=33.20 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
..+ |..+||++.|+ +..-+++-|+.|...|++.... +.|.|-..
T Consensus 32 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----g~G~~V~~ 76 (243)
T 2wv0_A 32 MPLPSEREYAEQFGI----SRMTVRQALSNLVNEGLLYRLK----GRGTFVSK 76 (243)
T ss_dssp CBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT----TSCEEECC
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEeC----CCeEEEeC
Confidence 567 89999999999 9999999999999999998764 45666654
No 404
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=78.10 E-value=2.1 Score=32.84 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 186 ~~t~~~lA~~lG~----sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999875
No 405
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=78.03 E-value=2.6 Score=33.03 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
..+ |..+||++.|+ +..-+++-|+.|...|++.... +.|.|...+
T Consensus 27 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~g~i~~~~----g~G~~V~~~ 72 (239)
T 3bwg_A 27 DKLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQVR----GSGIFVRKH 72 (239)
T ss_dssp CBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEECCC
T ss_pred CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEeC----CceEEEecC
Confidence 567 89999999999 9999999999999999998874 456666443
No 406
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=77.88 E-value=1.8 Score=32.83 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
-++|-++||..+|+ .+..+.|++.-|...|++...
T Consensus 177 ~~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 177 IPVAKQLVAGHLSI----QPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CCSCTHHHHHHTTS----CHHHHHHHHHHHHHHTSEEES
T ss_pred ecCCHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEec
Confidence 36788999999999 999999999999999999875
No 407
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=77.54 E-value=1.5 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .++.+.|+|+.|...|+++..
T Consensus 139 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATAS----IRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999876
No 408
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=77.39 E-value=1.3 Score=35.20 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=46.0
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC-Ccccceecccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS-GARRLYSLNSVSKYY 105 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~-~~~~~y~~t~~s~~l 105 (210)
+...|.+.+ ++++|..|||+++++ ++..+.++++-|...|++.+..+.. ...-...+|+.++.+
T Consensus 39 vL~~L~~~~-~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~ 103 (250)
T 1p4x_A 39 LLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREK 103 (250)
T ss_dssp HHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHH
T ss_pred HHHHHHhcC-CCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHH
Confidence 444555431 147999999999999 9999999999999999998763211 111236677777654
No 409
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=77.14 E-value=1.3 Score=35.41 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.3
Q ss_pred CCCC--CeEEEecCCccHHHHhhh
Q 036188 188 FDNI--KQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~--~~vvDiGGg~G~~~~~l~ 209 (210)
..+. .+|+|+|||.|..+..++
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA 107 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLA 107 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHH
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHH
Confidence 4444 799999999999998775
No 410
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=77.02 E-value=2.5 Score=28.43 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
.+.|+++||+.+|+ +++.+.|+++......+-..
T Consensus 17 ~~~~~~~lA~~~~~----s~~~l~r~fk~~~G~s~~~~ 50 (108)
T 3mn2_A 17 RPITIEKLTALTGI----SSRGIFKAFQRSRGYSPMAF 50 (108)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHTSSCHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHhCcCHHHH
Confidence 47999999999999 99999999998776665543
No 411
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=76.85 E-value=2.4 Score=35.38 Aligned_cols=40 Identities=5% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHhhcCCCCCCCHHHHHHHh--cCCCCCCcccHHHHHHHHhcccceeee
Q 036188 40 ILDKAGPGTKLSASDIAAQL--LTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 40 ~L~~~g~~~~~t~~eLA~~~--~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+|... +|.++.+||+++ ++ ++.-++|-|..|...|++.+.
T Consensus 30 yl~~~---~pV~s~~La~~~~l~V----S~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 30 YIENK---KPVSSQRVLEVSNIEF----SSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp HHHHC---SCBCHHHHHHHSCCCS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHcC---CCccHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 67664 699999999999 88 999999999999999999987
No 412
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=76.69 E-value=1.1 Score=37.24 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=17.4
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|||+|||+|.+++.++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la 172 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAA 172 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHH
Confidence 45699999999999998875
No 413
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=76.54 E-value=4.6 Score=28.16 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=42.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCC--Ccccceecccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDAS--GARRLYSLNSV 101 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~--~~~~~y~~t~~ 101 (210)
+|=|.-+|.. + .+ |+..|.+.||+ +.+-+...+.+|..+|+-.+-.-++ .+.|.|+++.=
T Consensus 22 RLyla~lId~-~--~~-nvp~L~~~TGm----PRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~dW 83 (117)
T 3ke2_A 22 KLYLAHLMDD-A--RH-NLLSLGKLTGM----PRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRTW 83 (117)
T ss_dssp HHHHHHHHHH-S--CC-CHHHHHHHHCC----CHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEEC
T ss_pred HHHHHHHHhc-C--CC-CHHHHHHHHCC----CHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEEeec
Confidence 3445556666 3 34 99999999999 9999999999999999887642111 12356666543
No 414
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=76.51 E-value=2.8 Score=28.22 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
.+.|+++||+.+|+ +++.+.|+++......+-..
T Consensus 20 ~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~ 53 (108)
T 3oou_A 20 EGMSLKTLGNDFHI----NAVYLGQLFQKEMGEHFTDY 53 (108)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHH
Confidence 48999999999999 99999999998877665543
No 415
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=76.43 E-value=2.5 Score=32.56 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 46 PGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 46 ~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
||..++-.+||+++|+ +...++.-|+.|...|+++..
T Consensus 36 pG~~L~E~~La~~lgV----SRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 36 PGQRLVETDLVAHFGV----GRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp TTCEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3468899999999999 999999999999999999876
No 416
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=76.26 E-value=2.6 Score=35.24 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=16.6
Q ss_pred CCeEEEecCCccHHHHhhh
Q 036188 191 IKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 191 ~~~vvDiGGg~G~~~~~l~ 209 (210)
..+|+|+|||.|.++..++
T Consensus 214 ~~~vLDl~cG~G~~~l~la 232 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALA 232 (369)
T ss_dssp CSEEEEESCTTSHHHHHHG
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 3689999999999998775
No 417
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=76.13 E-value=2.4 Score=32.79 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=32.7
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+++.|...|+++..
T Consensus 177 ~~t~~~iA~~lG~----sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGV----HHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCeEeC
Confidence 7899999999999 999999999999999999986
No 418
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=76.08 E-value=1 Score=38.91 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 164 KHFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 164 ~~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..|.......+......+....+ .....+|+|+|||+|..+..++
T Consensus 234 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la 278 (450)
T 2yxl_A 234 SAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLA 278 (450)
T ss_dssp HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHH
T ss_pred chhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHH
Confidence 34554433333332333334444 5667899999999999888765
No 419
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=75.94 E-value=2.8 Score=28.98 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhc
Q 036188 30 QAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLAS 79 (210)
Q Consensus 30 ~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~ 79 (210)
..+-++.|+..|.+ +.|..+|++.+|+ +..-+.|+-|.|..
T Consensus 44 alaqR~~Ia~lL~~-----G~SyreIa~~tG~----StaTIsRv~r~L~~ 84 (107)
T 3frw_A 44 SLSQRFEVAKMLTD-----KRTYLDISEKTGA----STATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHHHHT-----TCCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHCc----cHHHHHHHHHHHHc
Confidence 34567889999987 5999999999999 98888888887753
No 420
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=75.81 E-value=2.6 Score=32.84 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.5
Q ss_pred CCCCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 46 PGTKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 46 ~~~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
||..+ +-.+||+++|+ +...++.-|+.|...|+++.
T Consensus 24 pG~~LpsE~~La~~lgV----SRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 24 IGDHLPSERALSETLGV----SRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TTCBCCCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC
T ss_pred CCCcCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEe
Confidence 34678 57799999999 99999999999999999987
No 421
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=75.54 E-value=4.1 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=44.7
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHh-------cCCCCCCcccHHHHHHHHhcccceeeeccCC----Ccccceecccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQL-------LTKNKDAPMMLDRILRLLASYSVVECSLDAS----GARRLYSLNSVSKYY 105 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~-------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~----~~~~~y~~t~~s~~l 105 (210)
|...|.+ +|.+--||.+.+ ++ ++..|.+.|+-|...|+++...... -..-.|++|+.++..
T Consensus 49 IL~lL~~----~p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 120 (148)
T 2zfw_A 49 VLAVLRH----EDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHTT----CCEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHH
Confidence 3445665 688888888877 47 8999999999999999998753110 012249999888754
Q ss_pred c
Q 036188 106 V 106 (210)
Q Consensus 106 ~ 106 (210)
.
T Consensus 121 l 121 (148)
T 2zfw_A 121 S 121 (148)
T ss_dssp T
T ss_pred H
Confidence 4
No 422
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=75.31 E-value=2.8 Score=33.73 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++-+.+- ++...+|||+||++|.++...+
T Consensus 62 L~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa 92 (269)
T 2px2_A 62 LRWLVERRF-VQPIGKVVDLGCGRGGWSYYAA 92 (269)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTSHHHHHHT
T ss_pred HHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHh
Confidence 345555653 7888999999999999988654
No 423
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=75.28 E-value=1.7 Score=37.37 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.8
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|+|||.|..++.++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA 112 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALM 112 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHH
Confidence 336899999999999988775
No 424
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=75.19 E-value=3.1 Score=33.40 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~ 101 (210)
..+ |..+||++.|+ +..-+++-|..|+..|++.... +.|.|...+.
T Consensus 51 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----g~G~~V~~~~ 97 (272)
T 3eet_A 51 TRLPSQARIREEYGV----SDTVALEARKVLMAEGLVEGRS----GSGTYVRERP 97 (272)
T ss_dssp SBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC----C--EEECCCC
T ss_pred CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec----CceEEEecCC
Confidence 567 89999999999 9999999999999999998764 5677766543
No 425
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=75.07 E-value=3.2 Score=31.87 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhcCCCCCCc-ccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAP-MMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~-~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+ ..+.|+|+.|...|+++..
T Consensus 169 ~~t~~~lA~~lG~----sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGI----AHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC----ChHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 99 6999999999999999876
No 426
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=75.07 E-value=3.3 Score=32.73 Aligned_cols=45 Identities=22% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSV 101 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~ 101 (210)
..+ |-.+||++.|+ +..-+++-|+.|+..|++.. . +.|.|...+.
T Consensus 34 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~-~----g~Gt~V~~~~ 79 (248)
T 3f8m_A 34 DPFPAEREIAEQFEV----ARETVRQALRELLIDGRVER-R----GRTTVVARPK 79 (248)
T ss_dssp CBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE-E----TTEEEECCCC
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe-C----CCEEEEccCc
Confidence 577 89999999999 99999999999999999998 5 6788876653
No 427
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=74.95 E-value=3.2 Score=28.20 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=32.7
Q ss_pred hhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 38 FEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 38 fd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
.+.|.++- ..+.|+++||+.+++ +++.|.|+++......+-..
T Consensus 13 ~~~i~~~~-~~~~~~~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~ 55 (113)
T 3oio_A 13 VSLMEANI-EEPLSTDDIAYYVGV----SRRQLERLFKQYLGTVPSKY 55 (113)
T ss_dssp HHHHHTCS-SSCCCHHHHHHHHTS----CHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhh-cCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHH
Confidence 34454431 157999999999999 99999999998877665543
No 428
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=74.93 E-value=1.8 Score=37.17 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=20.9
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+++... .....+|+|.|||+|.++..+.
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~ 190 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAY 190 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHH
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHH
Confidence 3344443 4456799999999999998764
No 429
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=74.66 E-value=3.1 Score=28.74 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.-+|+..|++++++ .-...++.||.|...|++...
T Consensus 58 KlITpsvlseRlkI----~gSLAR~aLreL~~kGlIk~V 92 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKI----GGSLARIALRHLEKEGIIKPI 92 (108)
T ss_dssp SSBSHHHHHHTTCC----CTTHHHHHHHHHSSSSSCEEE
T ss_pred eEEeHHHhhhhhhh----hHHHHHHHHHHHHHCCCEEEE
Confidence 35999999999999 999999999999999999876
No 430
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=74.38 E-value=2.6 Score=31.84 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
++|-++||..+|+ .+..+.|+++.|...|+++.
T Consensus 167 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGT----TRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999 99999999999999999987
No 431
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=74.28 E-value=4.3 Score=28.09 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHh-------cCCCCCCcccHHHHHHHHhcccceeeeccCC---C-cccceecccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQL-------LTKNKDAPMMLDRILRLLASYSVVECSLDAS---G-ARRLYSLNSVSKYY 105 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~-------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~---~-~~~~y~~t~~s~~l 105 (210)
|...|.+ +|.+--||.+.+ ++ ++..|...|+-|...|+++...... + ..-.|++|+.++..
T Consensus 27 IL~lL~~----~~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~ 98 (115)
T 2dql_A 27 ILYVLLQ----GESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQ 98 (115)
T ss_dssp HHHHHTT----SCBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHH
T ss_pred HHHHHHh----CCCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHH
Confidence 3444665 588888888777 47 8999999999999999998653110 0 11238888887643
No 432
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=74.17 E-value=2.1 Score=25.54 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=24.0
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
..|+..+.+ +.|..|||+.+|+ ++..+...++
T Consensus 4 ~~vl~l~~~-----g~s~~eIA~~l~i----s~~tV~~~~~ 35 (61)
T 2jpc_A 4 RQVLKLIDE-----GYTNHGISEKLHI----SIKTVETHRM 35 (61)
T ss_dssp HHHHHHHHT-----SCCSHHHHHHTCS----CHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCHHHHHHHhCC----CHHHHHHHHH
Confidence 445666544 7899999999999 8887765553
No 433
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=73.91 E-value=2.6 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.-+|...|++++++ +-...+++||.|...|++...
T Consensus 62 KlITpsvlseRlkI----~gSLARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 62 KVLTVSTVVEKLKV----NGSLARQLMRTMADRKLVEKV 96 (143)
T ss_dssp SEECHHHHHHHHCB----CHHHHHHHHHHHHHTTSEEEE
T ss_pred eeecHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 35899999999999 999999999999999999866
No 434
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=73.71 E-value=0.43 Score=35.25 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=38.1
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVEC 85 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~ 85 (210)
+..|.+.|... +.+|..+||+++|+ ++..+++-++.|...|++..
T Consensus 15 ~~~Il~~l~~~---~~ls~~eLa~~lgv----Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHC---SSCCTTGGGTSSSC----CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 44566666663 58899999999999 99999999999999999974
No 435
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=73.67 E-value=1.1 Score=37.02 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=17.7
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+|+|+|||+|.++..++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~ 149 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVI 149 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHH
T ss_pred CCCCEEEeCCCCccHHHHHHH
Confidence 346799999999999998764
No 436
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=73.64 E-value=2.5 Score=32.02 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 163 ~~t~~~lA~~lG~----sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIGS----SRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHCS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred cCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEEc
Confidence 5899999999999 999999999999999999886
No 437
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=73.15 E-value=1.6 Score=36.96 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=48.0
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccccCC
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNK 109 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~~~~ 109 (210)
|.+.|-+. ...|++++++.+++ ...-.+|.|+.|+..|++++.. ++....|.+++.-..|.++.
T Consensus 302 ll~~l~~~---p~~t~~~~~~~~~~----S~~TA~r~L~~L~e~GiL~~~~--~gR~~~y~~~~~l~il~~~~ 365 (373)
T 3eqx_A 302 LVQVIFEQ---PYCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQ--SGKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHC---SEEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC----CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHC---CCccHHHHHHHhCc----CHHHHHHHHHHHHHCCcEEEeC--CCCceEeehHHHHHHHhccC
Confidence 56667664 35899999999999 9999999999999999999872 11233477776666665554
No 438
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=73.14 E-value=2 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=16.7
Q ss_pred CCCCeEEEecCCccHHHHh
Q 036188 189 DNIKQLVDVGGSLGVTLQA 207 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~ 207 (210)
....+|+|+|||+|.++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~ 212 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA 212 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH
T ss_pred CCCCEEEEccCccCHHHHh
Confidence 4568999999999999886
No 439
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=73.00 E-value=2.7 Score=38.56 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+..++.... |.....|+|.+||+|.++++.+
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa 209 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAA 209 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHH
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHH
Confidence 445566665 8888899999999999998764
No 440
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=72.80 E-value=2.8 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .++.+.|+|+-|...|+++..
T Consensus 217 ~lt~~~lA~~lG~----sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999875
No 441
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=72.43 E-value=0.3 Score=40.92 Aligned_cols=47 Identities=15% Similarity=-0.004 Sum_probs=40.3
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..++-.|-.. ++.|+.|||+.+|+ +...+.+.|+-|...|++...
T Consensus 19 ~ea~vY~~Ll~~---g~~t~~eia~~~gv----~~~~Vy~~L~~L~~~GlV~~~ 65 (342)
T 3qph_A 19 YEILTYWTLLVY---GPSTAKEISTKSGI----PYNRVYDTISSLKLRGFVTEI 65 (342)
T ss_dssp HTTSCSHHHHHH---HHHHHSCCSSSTTS----SSCSCCHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455566666554 58999999999999 999999999999999999876
No 442
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=72.41 E-value=1.4 Score=37.14 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=18.1
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|+|+|||+|.++..++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la 231 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAA 231 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHH
Confidence 456799999999999998775
No 443
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=72.24 E-value=0.76 Score=41.30 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=0.0
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
-|.++|.+. +.+|.+||++.|++ ++..++++|+-|+..|++...
T Consensus 520 ~I~~~l~~~---g~it~~di~~l~~l----s~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 520 AAMLWLSEV---GDLATSDLMAMCGV----SRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEe
Confidence 477888776 59999999999999 999999999999999999876
No 444
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=71.75 E-value=2.9 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
+.|..|||+.+|+ ++..+.++++
T Consensus 31 g~s~~eIA~~lgi----s~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGV----SERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTS----CHHHHHHHHT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHH
Confidence 6799999999999 9998888764
No 445
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=71.61 E-value=1.7 Score=37.30 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|+|+|||.|.++..++
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la 309 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLA 309 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHH
T ss_pred CCCCEEEEeeccchHHHHHHH
Confidence 346799999999999998775
No 446
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=71.37 E-value=1.4 Score=35.68 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
++...+|||+|||.|.+++.++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a 144 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIA 144 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHH
T ss_pred cCCCCEEEEecCcCcHHHHHHH
Confidence 4567899999999999998765
No 447
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=71.28 E-value=6 Score=31.20 Aligned_cols=36 Identities=14% Similarity=-0.033 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
|.+|+++|++.+|+ ++.+.+..|..|...|++..++
T Consensus 180 g~vt~~~L~~~lgW----~~~Ra~~~L~~l~~~G~lwvD~ 215 (233)
T 1u5t_A 180 GYSSISLLKANLGW----EAVRSKSALDEMVANGLLWIDY 215 (233)
T ss_dssp SCCBHHHHHHHHCC----CSHHHHHHHHHHHHTTSSEEEC
T ss_pred CcCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEeC
Confidence 69999999999999 9999999999999999999873
No 448
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=70.72 E-value=1.9 Score=36.32 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=47.0
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccccCC
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNK 109 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~~~~ 109 (210)
.|.+.|-.. .-.+++++++.+|+ +++-++|.|+.|+..|++++.. . +....|...+.-..|..+.
T Consensus 301 ~ll~~l~~~---p~~t~~~~~~~~gv----S~~Ta~r~L~~L~e~GiL~~~~-~-gR~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 301 ELVQVIFEQ---PYCRIQNLVESGLA----KRQTASVYLKQLCDIGVLEEVQ-S-GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHHC---SEEEHHHHHHTSSS----CHHHHHHHHHHHHHTTSCEEC----CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHhC---CcccHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEEec-C-CCceEEehHHHHHHHccCC
Confidence 355666653 24689999999999 9999999999999999999872 1 1223466666666665443
No 449
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=70.69 E-value=3.8 Score=34.81 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=18.0
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
+...+|||+|||+|.+++.++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a 233 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAA 233 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHH
T ss_pred cCCCeEEEcccchhHHHHHHH
Confidence 347899999999999998875
No 450
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=70.64 E-value=1.1 Score=38.30 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=20.7
Q ss_pred HHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 182 LESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 182 l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
....+ .....+|+|+|||+|..+..++
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la 265 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHIL 265 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHH
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHH
Confidence 33444 5567799999999999988765
No 451
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=69.95 E-value=1.9 Score=36.42 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=17.8
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|+|||.|.++..++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la 236 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAA 236 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHH
Confidence 56899999999999998775
No 452
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=69.89 E-value=0.93 Score=36.58 Aligned_cols=60 Identities=8% Similarity=0.152 Sum_probs=0.0
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHh-cCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNS 100 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~-~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~ 100 (210)
++..|+++|...+.+.++++++|++++ ++ ++..++..++.|...|.+=... .+++|+.|.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~----~~~~v~~al~~L~~eG~IYsTi----Dd~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYSTV----DDDHFKSTD 268 (270)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCC----CHHHHHHHHHHHHhCCEEeccc----cccceeecc
Confidence 455688888765323589999999999 69 9999999999999999884431 367887764
No 453
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.82 E-value=3.6 Score=25.31 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=24.9
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHH
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRL 76 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~ 76 (210)
+..|+..+.+ +.|..|||+.+|+ ++..+.+.+..
T Consensus 16 e~~il~~~~~-----g~s~~eIA~~l~i----s~~tV~~~~~~ 49 (74)
T 1fse_A 16 EREVFELLVQ-----DKTTKEIASELFI----SEKTVRNHISN 49 (74)
T ss_dssp HHHHHHHHTT-----TCCHHHHHHHHTS----CHHHHHHHHHH
T ss_pred HHHHHHHHHc-----CCCHHHHHHHHCC----CHHHHHHHHHH
Confidence 3445666533 7799999999999 88877666544
No 454
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=69.43 E-value=1.8 Score=36.63 Aligned_cols=21 Identities=10% Similarity=-0.075 Sum_probs=17.9
Q ss_pred CCCCeEEEecCCccHHHHhhh
Q 036188 189 DNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+..+|+|+|||+|.++..++
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la 239 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSAL 239 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHH
Confidence 346799999999999998775
No 455
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=69.27 E-value=4.4 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=27.4
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHH
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLL 77 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L 77 (210)
+.++|.++- ..+.|+++||+.+++ +++.|.|+++..
T Consensus 12 ~~~~i~~~~-~~~~~~~~lA~~~~~----S~~~l~r~fk~~ 47 (120)
T 3mkl_A 12 VCTVINNNI-AHEWTLARIASELLM----SPSLLKKKLREE 47 (120)
T ss_dssp HHHHHHTST-TSCCCHHHHHHHTTC----CHHHHHHHHHHT
T ss_pred HHHHHHHhc-cCCCCHHHHHHHHCc----CHHHHHHHHHHc
Confidence 344454431 148999999999999 999999998873
No 456
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=69.09 E-value=3.1 Score=29.91 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=47.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcc---cceeeeccCCCcccceecccccccccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASY---SVVECSLDASGARRLYSLNSVSKYYVP 107 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~---gl~~~~~~~~~~~~~y~~t~~s~~l~~ 107 (210)
.+.+|..+.+. -|+..-|+++++ .+..+.+.++.|... -||++... +.+...+.+|+.++.|..
T Consensus 28 ~L~~f~av~e~-----gS~s~AA~~L~i----SqsavS~~I~~LE~~lG~~Lf~R~~~-G~~grg~~LT~~G~~ll~ 94 (135)
T 2ijl_A 28 KVELMQLIAET-----GSISAAGRAMDM----SYRRAWLLVDALNHMFRQPVICSQRG-GKQGGGAALTVFGAELLE 94 (135)
T ss_dssp HHHHHHHHHHH-----SCHHHHHHHTTC----CHHHHHHHHHHHHHHBSSCSEEECCC-------EEECHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHHCc----CHHHHHHHHHHHHHHHCCeeEEecCC-CCCCCceeECHHHHHHHH
Confidence 46678888884 389999999999 999999999999876 78988610 000147999999987653
No 457
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.02 E-value=3.9 Score=33.24 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=41.9
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH-HHhcccceeeeccCCCcccceecccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR-LLASYSVVECSLDASGARRLYSLNSVSK 103 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr-~L~~~gl~~~~~~~~~~~~~y~~t~~s~ 103 (210)
+...+...+ +++.+..++|+.+|+ +...+.+.++ +|...|++... ......|+.+.
T Consensus 268 ~l~~l~~~~-~~~~~~~~~a~~lg~----~~~tl~~~l~~~l~~~gli~~~------~~g~~~t~~~~ 324 (338)
T 3pfi_A 268 YLELLTAAK-QKPIGLASIAAALSE----DENTIEDVIEPYLLANGYIERT------AKGRIASAKSY 324 (338)
T ss_dssp HHHHHHHSC-SCCBCHHHHHHHTTC----CHHHHHHTTHHHHHHTTSEEEE------TTEEEECHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHhCC----CHHHHHHHHhHHHHHcCceecC------CCcccccHHHH
Confidence 444454432 367899999999999 9999999998 99999999886 33344555543
No 458
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=68.97 E-value=4.7 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=27.0
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
..|+..+.+ .+ |..++|+++|+ .+..+.++++
T Consensus 4 ~~l~~~~~~----~g-s~~~~A~~lgi----s~~~vs~~~~ 35 (67)
T 2pij_A 4 IPLSKYLEE----HG-TQSALAAALGV----NQSAISQMVR 35 (67)
T ss_dssp EEHHHHHHH----TC-CHHHHHHHHTS----CHHHHHHHHH
T ss_pred HHHHHHHHH----cC-CHHHHHHHHCc----CHHHHHHHHc
Confidence 356777877 35 99999999999 9999999985
No 459
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=68.26 E-value=1.6 Score=38.16 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=18.8
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|+|+|+|..+..++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA 120 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLA 120 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHH
T ss_pred cCCCCEEEEEcCCcCHHHHHHH
Confidence 5567899999999999888775
No 460
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=67.88 E-value=4.3 Score=26.75 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=29.5
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHH-HHHhcccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRIL-RLLASYSV 82 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlL-r~L~~~gl 82 (210)
.+..|+..+.+ +.|..|||+.+++ .+.-++..+ +.+..+|+
T Consensus 33 rE~~Vl~l~~~-----G~s~~eIA~~L~i----S~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 33 RECLILQEVEK-----GFTNQEIADALHL----SKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp HHHHHHHHHHT-----TCCHHHHHHHHTC----CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHCc----CHHHHHHHHHHHHHHHCC
Confidence 45667777775 8899999999999 888766554 34444443
No 461
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=67.80 E-value=2.7 Score=30.91 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=16.4
Q ss_pred CCCCeEEEecCCcc-HHHHhhh
Q 036188 189 DNIKQLVDVGGSLG-VTLQAIT 209 (210)
Q Consensus 189 ~~~~~vvDiGGg~G-~~~~~l~ 209 (210)
....++||||+|.| ..+..|.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La 55 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIR 55 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHH
T ss_pred CCCCcEEEEccCCChHHHHHHH
Confidence 44569999999999 4777664
No 462
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.55 E-value=20 Score=28.53 Aligned_cols=45 Identities=16% Similarity=-0.021 Sum_probs=37.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
...++..++. ++.+.++|++.+ ++ +...+.+.|+.|...|++.+.
T Consensus 284 ~~~~l~~la~----g~~~~~~l~~~~~~~~~~~----~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 284 YVDILRAIAL----GYNRWSLIRDYLAVKGTKI----PEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHT----TCCSHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhCCCEEec
Confidence 3456677776 367999999887 78 888899999999999999875
No 463
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=67.43 E-value=2.8 Score=28.78 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.3
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcC
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLT 61 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~ 61 (210)
++-.|.++|.+ +|+|+.|||+.+|+
T Consensus 12 ~Re~Ii~lL~~----~plta~ei~~~l~i 36 (105)
T 2gmg_A 12 RREKIIELLLE----GDYSPSELARILDM 36 (105)
T ss_dssp HHHHHHHHTTT----SCBCTTHHHHSSCC
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHhCC
Confidence 45568888875 69999999999999
No 464
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=67.33 E-value=5.4 Score=32.65 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=22.3
Q ss_pred HHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 180 NILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 180 ~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.+.+. .-+....++||+|+++|.++..++
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~ 100 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAA 100 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHH
Confidence 33444 326778999999999999988765
No 465
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=67.31 E-value=5.4 Score=28.65 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=43.0
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHh-------cCCCCCCcccHHHHHHHHhcccceeeeccCC---C-cccceecccccccc
Q 036188 37 IFEILDKAGPGTKLSASDIAAQL-------LTKNKDAPMMLDRILRLLASYSVVECSLDAS---G-ARRLYSLNSVSKYY 105 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~-------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~---~-~~~~y~~t~~s~~l 105 (210)
|...|.+ +|.+--+|++.+ ++ ++..+...|+-|...|+++...... + ..-.|++|+.++..
T Consensus 39 IL~lL~~----~~~~Gyei~k~l~~~~~~~~i----s~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 110 (138)
T 2e1n_A 39 VLAVLRH----EDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 110 (138)
T ss_dssp HHHHHTT----SCEEHHHHHHHHHHHSTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHH
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHH
Confidence 4455665 588888888776 47 8899999999999999998652110 0 11238888877643
No 466
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=66.58 E-value=3.6 Score=33.24 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
..++..+. .....|+|++||+|..+++.+
T Consensus 226 ~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~ 254 (297)
T 2zig_A 226 ERLVRMFS--FVGDVVLDPFAGTGTTLIAAA 254 (297)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHH
Confidence 44455543 345699999999999998764
No 467
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=66.35 E-value=2.8 Score=37.21 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=17.9
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|.+||+|.++..+.
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~ 188 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEAD 188 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHH
T ss_pred cCCCCeEecCCcccchHHHHHH
Confidence 3456799999999999987754
No 468
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=66.22 E-value=2.1 Score=37.21 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhhhHHHHHHhCCCCCCCCeEEEecCCccHHHHhhh
Q 036188 165 HFNAAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 165 ~f~~~M~~~~~~~~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.|....-..+.....-+....+ .....+|+|+|+|+|..+..++
T Consensus 81 ~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA 124 (456)
T 3m4x_A 81 LHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLA 124 (456)
T ss_dssp HHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHH
T ss_pred HHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHH
Confidence 3444433333332233334444 5667899999999998887765
No 469
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=66.20 E-value=4.7 Score=28.12 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=43.8
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceeccccccccccCCCCCChHH
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGP 116 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~ 116 (210)
+.+.|.++- ..+.|+++||+.+|+ +++.+.|+++....+.+-+.. ..++.......|.... .++..
T Consensus 16 ~~~~i~~~~-~~~~sl~~lA~~~~~----S~~~l~r~fk~~~G~s~~~~l-------~~~Rl~~A~~lL~~~~--~si~~ 81 (129)
T 1bl0_A 16 ILDWIEDNL-ESPLSLEKVSERSGY----SKWHLQRMFKKETGHSLGQYI-------RSRKMTEIAQKLKESN--EPILY 81 (129)
T ss_dssp HHHHHHTTT-TSCCCCHHHHHHSSS----CHHHHHHHHHHHHSSCHHHHH-------HHHHHHHHHHHHHHCC--CCHHH
T ss_pred HHHHHHHcc-CCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHHHH-------HHHHHHHHHHHHHcCC--CCHHH
Confidence 344454431 147999999999999 999999999988777665543 3344444444454322 24555
Q ss_pred HHH
Q 036188 117 LIQ 119 (210)
Q Consensus 117 ~~~ 119 (210)
+..
T Consensus 82 IA~ 84 (129)
T 1bl0_A 82 LAE 84 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 470
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=65.56 E-value=3.2 Score=30.86 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=35.0
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+.+...++-. +|+|-.||++..|+ + ...+++.|...|++.+.
T Consensus 97 LEtLaiIay~---qPiTR~eI~~irGv----~---~~~~v~~L~e~glI~e~ 138 (162)
T 1t6s_A 97 LEVLAVVAWH---QPVTKGEIQQIRGA----S---PDYSIDRLLARGLIEVR 138 (162)
T ss_dssp HHHHHHHHHH---CSEEHHHHHHHHTC----C---CCSHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCC----C---HHHHHHHHHHCCCEEEc
Confidence 4456677776 59999999999999 7 44689999999999975
No 471
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=65.38 E-value=3.4 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
+.|..+||+.+|+ +..-+.++++
T Consensus 21 g~s~~~ia~~lgv----s~~Tv~r~l~ 43 (52)
T 1jko_C 21 GHPRQQLAIIFGI----GVSTLYRYFP 43 (52)
T ss_dssp TCCHHHHHHTTSC----CHHHHHHHSC
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHH
Confidence 5899999999999 8888877764
No 472
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.36 E-value=4.9 Score=25.76 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=26.7
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH-HHhccc
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR-LLASYS 81 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr-~L~~~g 81 (210)
+..|+..+.+ +.|..|||+.+|+ .+..++..++ .+..++
T Consensus 26 e~~vl~l~~~-----g~s~~eIA~~l~i----s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 26 ERDILKLIAQ-----GLPNKMIARRLDI----TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp HHHHHHHHTT-----TCCHHHHHHHHTS----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc-----CCCHHHHHHHHCc----CHHHHHHHHHHHHHHHc
Confidence 3445655533 7899999999999 8887765553 334443
No 473
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=65.26 E-value=6.4 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeec
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL 87 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~ 87 (210)
|.+|+++|++.+++ ++.+.+..|..|...|++..++
T Consensus 167 g~vt~~~L~~~l~W----~~~Ra~~~L~~l~~~GllwvD~ 202 (234)
T 3cuq_A 167 GYVTVSEIKASLKW----ETERARQVLEHLLKEGLAWLDL 202 (234)
T ss_dssp SEECHHHHHHHHTC----CHHHHHHHHHHHHHHTSCEEES
T ss_pred CcCcHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEeC
Confidence 68999999999999 9999999999999999999873
No 474
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=65.22 E-value=2.4 Score=35.64 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=17.6
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|+|||+|.++..++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la 228 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLA 228 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHH
Confidence 56799999999999998775
No 475
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=64.95 E-value=4.4 Score=30.81 Aligned_cols=46 Identities=7% Similarity=-0.007 Sum_probs=39.2
Q ss_pred hhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 34 ELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 34 ~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
+-.|.+.|.++ +.+|++|||+.+++ ++.-++|=|..|..-++.++.
T Consensus 14 ~~~i~~~l~~~---~~~~~~~la~~~~v----s~~TiRrDl~eL~~~~l~~r~ 59 (190)
T 4a0z_A 14 REAIRQQIDSN---PFITDHELSDLFQV----SIQTIRLDRTYLNIPELRKRI 59 (190)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHC---CCEeHHHHHHHHCC----CHHHHHHHHHHhcCcchhhHh
Confidence 34577888886 48999999999999 999999999999998887754
No 476
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=64.88 E-value=6.6 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=22.9
Q ss_pred HHHHHHhCCCCCCCCeEEEecCCccHHHHhh
Q 036188 178 MSNILESYKGFDNIKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 178 ~~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l 208 (210)
...+.+.+. +.....|||+|+++|.++...
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~ 96 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYC 96 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHH
Confidence 345566664 776779999999999998744
No 477
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=64.55 E-value=1.8 Score=34.21 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=5.7
Q ss_pred CCC-CHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecc
Q 036188 48 TKL-SASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLN 99 (210)
Q Consensus 48 ~~~-t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t 99 (210)
..+ |..+||+++|+ +..-+++-++.|...|++.... +.|.|...
T Consensus 38 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~G~i~~~~----g~G~~V~~ 82 (247)
T 2ra5_A 38 SLLGNEIELAARLGL----SRPTVRQAIQSLVDKGLLVRRR----GVGTQVVH 82 (247)
T ss_dssp ----------------------------------CEEEEEC------------
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc----CceeEEec
Confidence 466 88999999999 9999999999999999998763 45666544
No 478
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=64.47 E-value=7.3 Score=27.32 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHh-----cCCCCCCcccHHHHHHHHhcccceeeeccCC--Ccccceec
Q 036188 26 PMAIQAVYELGIFEILDKAGPGTKLSASDIAAQL-----LTKNKDAPMMLDRILRLLASYSVVECSLDAS--GARRLYSL 98 (210)
Q Consensus 26 ~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~-----~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~--~~~~~y~~ 98 (210)
+..++-.+++=|...|. + |.+--+|.+.+ ++ ++..+..+|+-|...|+++...... ...-.|++
T Consensus 15 ~~l~~g~l~~~IL~lL~--~---p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~L 85 (123)
T 3ri2_A 15 LELRRGTLVMLVLSQLR--E---PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRT 85 (123)
T ss_dssp HHHHHHHHHHHHHHHTT--S---CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHhCcHHHHHHHHHc--C---CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEE
Confidence 33444445555555665 2 78888888885 67 8999999999999999998652100 01124777
Q ss_pred ccccccc
Q 036188 99 NSVSKYY 105 (210)
Q Consensus 99 t~~s~~l 105 (210)
|+.++..
T Consensus 86 T~~Gr~~ 92 (123)
T 3ri2_A 86 TDEGLRV 92 (123)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 7776543
No 479
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=64.45 E-value=6.9 Score=32.17 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCCCCeEEEecCCccHHHHhh
Q 036188 179 SNILESYKGFDNIKQLVDVGGSLGVTLQAI 208 (210)
Q Consensus 179 ~~~l~~~~~~~~~~~vvDiGGg~G~~~~~l 208 (210)
..+.+.+. +.....|||+||++|.++...
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~ 112 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYM 112 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHH
Confidence 45555655 666679999999999998743
No 480
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=64.14 E-value=7.5 Score=30.86 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCCCHHHHHH---HhcCCCCCCcccHHHHHHHHhcccceeeeccCCCcccceecccccc
Q 036188 48 TKLSASDIAA---QLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSK 103 (210)
Q Consensus 48 ~~~t~~eLA~---~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~~y~~t~~s~ 103 (210)
+.+++.+|.+ .+|+ ++..++--+.=|++.|+++.. ..| |++|+.++
T Consensus 19 ~~i~~~~Li~l~~~~Gi----~e~avRtAlsRL~~~G~L~~~-----~~G-Y~LT~~~~ 67 (247)
T 3kfw_X 19 AWATASELIQLTADFGI----KETTLRVALTRMVGAGDLVRS-----ADG-YRLSDRLL 67 (247)
T ss_dssp SCBCHHHHHHHHTTTTC----CHHHHHHHHHHHHHTTSEEEE-----TTE-EEECHHHH
T ss_pred CcccHHHHHHHHHHcCC----ChHHHHHHHHHHHHcCCeecc-----CCc-eeeCHHHH
Confidence 6888887665 5578 999999999999999999986 455 99999764
No 481
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=64.10 E-value=11 Score=24.84 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHhhchHHHHHHHHHhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccce
Q 036188 18 QLATGVVLPMAIQAVYELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVV 83 (210)
Q Consensus 18 ~~~~~~~~~~al~~a~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~ 83 (210)
+++.........+..++--|+......| ++.+..+.-..+++ |+....++..+++..|++
T Consensus 29 ~LC~~lrL~P~~YL~~K~~Li~E~~k~g--~~lkk~da~~~~ki----D~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 29 QLCIQLKILPKPYLVLKEVMFRELLKTG--GNLSKSACRELLNI----DPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHS--SCCCHHHHHHHTTS----CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhC--CCccHHHHHHHHcc----cHHHHHHHHHHHHHcCCC
Confidence 4444555555667777777766666544 56999999999999 999999999999999875
No 482
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=63.59 E-value=3.8 Score=34.64 Aligned_cols=20 Identities=30% Similarity=0.229 Sum_probs=16.6
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
+.-+|+|+|||+|..+..++
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v 71 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHII 71 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHH
Confidence 35789999999999887664
No 483
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=63.52 E-value=5 Score=24.91 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHH
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRIL 74 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlL 74 (210)
.+.|..|||+.+|+ ++..+++.+
T Consensus 29 ~~~s~~eIA~~l~i----s~~tV~~~~ 51 (73)
T 1ku3_A 29 REHTLEEVGAYFGV----TRERIRQIE 51 (73)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHH
Confidence 48999999999999 888777654
No 484
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=63.41 E-value=4.6 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=16.7
Q ss_pred CCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 50 LSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
+|..|||+++|+ .+.-+.|+|+
T Consensus 1 ~T~~diA~~aGV----S~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGV----SRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTS----CHHHHHHHHH
T ss_pred CCHHHHHHHHCc----CHHHHHHHHc
Confidence 377889999998 7777766664
No 485
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=63.02 E-value=5.6 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccc
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSV 82 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl 82 (210)
+.|+.+||+.+|+ ++.-+.+|++.....|.
T Consensus 23 g~s~~~ia~~~gI----s~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGI----NRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTS----CHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCc----CHHHHHHHHHHHhhcCc
Confidence 6899999999999 99999999987665443
No 486
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=62.74 E-value=6.4 Score=26.45 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=28.2
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHH-HHHhcccc
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRIL-RLLASYSV 82 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlL-r~L~~~gl 82 (210)
.+..|+..+.+ +.|..|||+.+++ .+..++..+ +.+..+|+
T Consensus 38 re~~Vl~l~~~-----G~s~~EIA~~L~i----S~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 38 KESEVLRLFAE-----GFLVTEIAKKLNR----SIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp HHHHHHHHHHH-----TCCHHHHHHHHTS----CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHCc----CHHHHHHHHHHHHHHHCC
Confidence 45566766655 8899999999999 888765544 33333343
No 487
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=62.31 E-value=1.6 Score=33.01 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 49 KLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
++|-++||..+|+ .+..+.|+|+.|...|+++..
T Consensus 164 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFGC----ARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp --------------------------------------
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCeEEEc
Confidence 7899999999999 999999999999999999875
No 488
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=62.21 E-value=5.6 Score=32.01 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHhhcCCCCCCCHHH---HHHHhcCCCCCCcccHHHHHHHHhcccceeeeccCCCccc---ceeccccccccc
Q 036188 40 ILDKAGPGTKLSASD---IAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASGARR---LYSLNSVSKYYV 106 (210)
Q Consensus 40 ~L~~~g~~~~~t~~e---LA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~~---~y~~t~~s~~l~ 106 (210)
++...| +.+++.+ |.+.+|+ ++..++--|.-|+..|+++.. ..| .|++|+.++...
T Consensus 35 ~~~~~g--~~i~~~~Li~l~~~~Gi----~~~avR~Al~RL~~~G~l~~~-----~~Gr~~~Y~Lt~~g~~~l 96 (266)
T 3l09_A 35 VSRDGV--IEVSGVALSSFVERMGL----QPQAMRVALHRLKRDGWVESR-----RLGRVGFHRLSDSALTQT 96 (266)
T ss_dssp HHHTTC--CCEEHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE-----EETTEEEEEECHHHHHHH
T ss_pred HhccCC--CcccHHHHHHHHHHcCC----CchHHHHHHHHHHHCCCeeee-----ecCCcceEEECHHHHHHH
Confidence 344443 6788877 7778899 999999999999999999876 344 799999886433
No 489
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=60.90 E-value=7.4 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
.++|..+||+++|+ ++..+.++.+
T Consensus 13 ~g~s~~~lA~~~gi----s~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEV----SRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTS----CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHc
Confidence 58999999999999 8888777653
No 490
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=60.89 E-value=7.2 Score=25.73 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=29.4
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHH-HHHhccccee
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRIL-RLLASYSVVE 84 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlL-r~L~~~gl~~ 84 (210)
.+..|+..+. .+.|..|||+.+|+ .+..++..+ |.+..++.-.
T Consensus 31 ~e~~vl~l~~-----~g~s~~eIA~~l~i----s~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 31 QERTLLGLLS-----EGLTNKQIADRMFL----AEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp HHHHHHHHHH-----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHH-----cCCCHHHHHHHHCc----CHHHHHHHHHHHHHHHcCCC
Confidence 3456677763 38999999999999 888766544 4444444433
No 491
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=60.70 E-value=4 Score=35.63 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.5
Q ss_pred CCCeEEEecCCccHHHHhhh
Q 036188 190 NIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 190 ~~~~vvDiGGg~G~~~~~l~ 209 (210)
...+|+|+|||+|..+..++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA 136 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQIS 136 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 67899999999999888765
No 492
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=60.14 E-value=9.6 Score=29.73 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred hChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 35 LGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 35 lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.-|+..|++ | .|.|.++||+.+|+ +.+.+++.|..+- .++.+
T Consensus 25 ~~llr~la~-G--rpv~~~~LA~~~g~----~~~~v~~~L~~l~---~~~~D 66 (220)
T 3f2g_A 25 VPLLRELAK-G--RPVSRTTLAGILDW----PAERVAAVLEQAT---STEYD 66 (220)
T ss_dssp HHHHHHHTT-T--SCBCHHHHHHHHTC----CHHHHHHHHHHCT---TCEEC
T ss_pred HHHHHHHhc-C--CCCCHHHHHHHhCc----CHHHHHHHHHhCC---cEEEC
Confidence 345566775 4 79999999999999 8877766666664 45444
No 493
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=60.13 E-value=7.8 Score=30.25 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=35.4
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccceeee
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECS 86 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~~~~ 86 (210)
.+..+|+-. +|+|-.||++..|+ ++ ..+++.|...|++.+.
T Consensus 104 EtLaiIAy~---QPITR~eI~~irGv----~~---~~~v~~Lle~gLI~e~ 144 (219)
T 2z99_A 104 ETLAVVAYR---QPVTRARVSAVRGV----NV---DAVMRTLLARGLITEV 144 (219)
T ss_dssp HHHHHHHHH---CSEEHHHHHHHHTS----CC---HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHHCC----CH---HHHHHHHHHCCCEEEc
Confidence 456667766 69999999999999 76 6899999999999986
No 494
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=59.90 E-value=2.9 Score=34.27 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=18.6
Q ss_pred CCCCCeEEEecCCccHHHHhhh
Q 036188 188 FDNIKQLVDVGGSLGVTLQAIT 209 (210)
Q Consensus 188 ~~~~~~vvDiGGg~G~~~~~l~ 209 (210)
.....+|+|+|+|.|..+..++
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la 121 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLA 121 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHH
Confidence 5567899999999999888765
No 495
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=59.16 E-value=8 Score=29.71 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=45.5
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHh--------cCCCCCCcccHHHHHHHHhcccceeeeccC-CCc--ccceecccccc
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQL--------LTKNKDAPMMLDRILRLLASYSVVECSLDA-SGA--RRLYSLNSVSK 103 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~--------~~~~~~~~~~l~rlLr~L~~~gl~~~~~~~-~~~--~~~y~~t~~s~ 103 (210)
-|...|.+ +|++--||++.+ ++ ++..+.+.|+-|...|+++..... ++. .-.|++|+.++
T Consensus 40 ~IL~lL~~----~p~~GYeL~~~l~~~~~~~~~~----s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr 110 (204)
T 3l9f_A 40 IILGILSK----KERSGYEINDILQNQLSYFYDG----TYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGK 110 (204)
T ss_dssp HHHHHTSS----CCEEHHHHHHHHHHTSTTTEEC----CTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHHHHhCCccCC----CcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHH
Confidence 34556765 699999999998 46 889999999999999999865311 111 12599999886
No 496
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.77 E-value=6.6 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHH-HHHhccc
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRIL-RLLASYS 81 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlL-r~L~~~g 81 (210)
.+.|.+|||+.+|+ ++..++..+ |++..+.
T Consensus 24 ~g~s~~eIA~~lgi----s~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 24 TDYTLEEVGKQFDV----TRERIRQIEAKALRKLR 54 (68)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHHHH
Confidence 48999999999999 888877755 3444433
No 497
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.36 E-value=14 Score=24.07 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.6
Q ss_pred hhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHHHHhcccce
Q 036188 37 IFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILRLLASYSVV 83 (210)
Q Consensus 37 lfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gl~ 83 (210)
|..+|.+. ++.|+.+|++++++ +..-+..=+.=|...+=+
T Consensus 13 VW~~L~~~---~~~s~~el~k~t~l----~d~el~lAIGWLaREdKI 52 (82)
T 2l02_A 13 VWHALNEA---DGISIPELARKVNL----SVESTALAVGWLARENKV 52 (82)
T ss_dssp HHHHHHHC---CSBCHHHHHHHHTC----CHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhcc---CCCCHHHHHHHhCC----CHHHHHHHHHHHhccCce
Confidence 67788885 59999999999999 888777666666666644
No 498
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.29 E-value=7.9 Score=24.09 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=24.8
Q ss_pred HhhChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 33 YELGIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 33 ~~lglfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
.+..|+..+. .+.|..|||+.+|+ ++..++..++
T Consensus 20 ~e~~vl~l~~-----~g~s~~eIA~~l~i----s~~tV~~~~~ 53 (79)
T 1x3u_A 20 RERQVLSAVV-----AGLPNKSIAYDLDI----SPRTVEVHRA 53 (79)
T ss_dssp HHHHHHHHHT-----TTCCHHHHHHHTTS----CHHHHHHHHH
T ss_pred HHHHHHHHHH-----cCCCHHHHHHHHCc----CHHHHHHHHH
Confidence 3455665542 38899999999999 8887765553
No 499
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=58.29 E-value=5.5 Score=26.64 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=26.1
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHHhcCCCCCCcccHHHHHH
Q 036188 36 GIFEILDKAGPGTKLSASDIAAQLLTKNKDAPMMLDRILR 75 (210)
Q Consensus 36 glfd~L~~~g~~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 75 (210)
.|.+.|... +.|+.|||+.+|+ ++.-+.|.|.
T Consensus 11 ~I~~~l~~~----~~ti~dlA~~~gV----S~~TVsR~L~ 42 (93)
T 2l0k_A 11 KIGKYIVET----KKTVRVIAKEFGV----SKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHH----CCCHHHHHHHHTS----CHHHHHHHHT
T ss_pred HHHHHHHHc----CCCHHHHHHHHCC----CHHHHHHHHc
Confidence 466777763 5899999999999 9888888774
No 500
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.55 E-value=7.1 Score=25.22 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhcCCCCCCcccHHHHH
Q 036188 48 TKLSASDIAAQLLTKNKDAPMMLDRIL 74 (210)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~~~l~rlL 74 (210)
.+.|..|||+.+|+ ++..++..+
T Consensus 37 ~~~s~~EIA~~lgi----s~~tV~~~~ 59 (87)
T 1tty_A 37 KPKTLEEVGQYFNV----TRERIRQIE 59 (87)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHH
Confidence 48999999999999 888877655
Done!