BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036189
MEENEIIQNSAHRCPSKVYPLTTGDISQLPPSRPPHYQHFQIKKLPKLIIITLLVVAASI
SLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLD
YIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKINSQRR
NGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDVGMFIGRLPKQ
C

High Scoring Gene Products

Symbol, full name Information P value
AT3G52460 protein from Arabidopsis thaliana 7.4e-08
AT2G27260 protein from Arabidopsis thaliana 3.0e-07
AT1G61760 protein from Arabidopsis thaliana 0.00028

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036189
        (241 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079974 - symbol:AT3G52460 "AT3G52460" species...   142  7.4e-08   1
TAIR|locus:2039632 - symbol:AT2G27260 "AT2G27260" species...   135  3.0e-07   1
TAIR|locus:2195783 - symbol:AT1G61760 "AT1G61760" species...   110  0.00028   1


>TAIR|locus:2079974 [details] [associations]
            symbol:AT3G52460 "AT3G52460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL050300 IPI:IPI00528033 PIR:T08453 RefSeq:NP_190814.1
            UniGene:At.53904 PRIDE:Q9SVC7 EnsemblPlants:AT3G52460.1
            GeneID:824411 KEGG:ath:AT3G52460 TAIR:At3g52460 eggNOG:NOG313614
            HOGENOM:HOG000091110 InParanoid:Q9SVC7 OMA:ISTTITW PhylomeDB:Q9SVC7
            ProtClustDB:CLSN2684771 Genevestigator:Q9SVC7 Uniprot:Q9SVC7
        Length = 300

 Score = 142 (55.0 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 51/188 (27%), Positives = 81/188 (43%)

Query:    60 ISLTALICI---LMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQ 116
             I L  L+CI   + +  L P++P   ++ FSVSNF +      A+W  NLT +N +   +
Sbjct:   114 IVLVVLLCISTTITWLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLK 173

Query:   117 IYLDYIECI-----ALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDS-LIFLNHQ 170
              Y D I+ +     A+  D F   +  +   P  V+  K   I   L  GD     +   
Sbjct:   174 GYFDRIQGLVYHQNAVGEDEF---LATAFFQPVFVETKKSVVIGETLTAGDKEQPKVPSW 230

Query:   171 LLQKINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGLSDSDV 230
             ++ ++  +R  G  V F L +     F    W      + L   C  LKVGF+G+S +  
Sbjct:   231 VVDEMKKERETGT-VTFSLRMAVWVTFKTDGWA--ARESGLKVFCGKLKVGFEGISGNGA 287

Query:   231 GMFIGRLP 238
              +    LP
Sbjct:   288 VLLPKPLP 295


>TAIR|locus:2039632 [details] [associations]
            symbol:AT2G27260 "AT2G27260" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR004864 GO:GO:0009506 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006233 Pfam:PF03168 EMBL:AF325072
            EMBL:AY049301 EMBL:AY093756 IPI:IPI00519153 PIR:G84670
            RefSeq:NP_565642.1 UniGene:At.13628 ProteinModelPortal:Q9XIN3
            PaxDb:Q9XIN3 PRIDE:Q9XIN3 EnsemblPlants:AT2G27260.1 GeneID:817268
            KEGG:ath:AT2G27260 TAIR:At2g27260 eggNOG:NOG313634
            HOGENOM:HOG000090343 InParanoid:Q9XIN3 OMA:TRRRVMR PhylomeDB:Q9XIN3
            ProtClustDB:CLSN2713610 ArrayExpress:Q9XIN3 Genevestigator:Q9XIN3
            Uniprot:Q9XIN3
        Length = 243

 Score = 135 (52.6 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 43/190 (22%), Positives = 88/190 (46%)

Query:    55 VVAASISLTALICILMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHL 114
             V    + L  LI  + +  + P+LP ++L++ SVSNF + +  +  KWD  L F+NP+  
Sbjct:    65 VFTTFLLLLGLILFIFFLIVRPQLPDVNLNSLSVSNFNVSNNQVSGKWDLQLQFRNPNSK 124

Query:   115 WQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQK 174
               ++ +   C A+ ++   ++++ +   PF      ++ ++  L+   +  +++ +L+  
Sbjct:   125 MSLHYETALC-AMYYNR--VSLSETRLQPFDQGKKDQTVVNATLSVSGT--YVDGRLVDS 179

Query:   175 INSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYT---CLDLKVGFKGLSDSDVG 231
             I  +R     V F L + +   F       +  F    Y    C D+ VG   +S  + G
Sbjct:   180 IGKERSVKGNVEFDLRMISYVTFR------YGAFRRRRYVTVYCDDVAVGVP-VSSGE-G 231

Query:   232 MFIGRLPKQC 241
               +G   K+C
Sbjct:   232 KMVGS-SKRC 240


>TAIR|locus:2195783 [details] [associations]
            symbol:AT1G61760 "AT1G61760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004864 EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC005882 Pfam:PF03168
            HOGENOM:HOG000241049 ProtClustDB:CLSN2682038 IPI:IPI00519074
            PIR:D96643 RefSeq:NP_176369.1 UniGene:At.66072
            ProteinModelPortal:Q9SYB2 PRIDE:Q9SYB2 EnsemblPlants:AT1G61760.1
            GeneID:842473 KEGG:ath:AT1G61760 TAIR:At1g61760 eggNOG:NOG263877
            InParanoid:Q9SYB2 OMA:FETSHIS PhylomeDB:Q9SYB2
            Genevestigator:Q9SYB2 Uniprot:Q9SYB2
        Length = 224

 Score = 110 (43.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 40/172 (23%), Positives = 80/172 (46%)

Query:    59 SISLTALICI-----LMYFTLGPKLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDH 113
             +I L+ L+C+     +++ +L P  P +H+  FS+S  +       +   F +T  NP+ 
Sbjct:    46 AIFLSLLLCLGIITFILWISLQPHRPRVHIRGFSISGLSRPDGFETSHISFKITAHNPNQ 105

Query:   114 LWQIYLDYIECIALNHDHFPIAINHSVSPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQ 173
                IY D +E  ++ +    I  +  ++ PF   P  K+T  +  A     + +N     
Sbjct:   106 NVGIYYDSMEG-SVYYKEKRIG-STKLTNPFYQDP--KNTSSIDGALSRPAMAVNKDRWM 161

Query:   174 KINSQRRNGRMVVFGLAVRAKTRFTGVSWLWWTEFANLMYTCLDLKVGFKGL 225
             ++   R  G+ ++F L VR+  RF   +W      ++ MY    +++G+ G+
Sbjct:   162 EMERDRNQGK-IMFRLKVRSMIRFKVYTW---HSKSHKMYASCYIEIGWDGM 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       228   0.00081  113 3  11 22  0.48    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Total cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Start:  Sat May 11 04:14:30 2013   End:  Sat May 11 04:14:31 2013

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