BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036189
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp Mip) In E. Coli Polar Lipids
          Length = 220

 Score = 30.4 bits (67), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 135 AINHSVSPPFKVKPMKKSTIHVQLATGDSL---IFLNHQLLQKINS---QRRNGRMVVFG 188
           A+ +SV+PP     +  +T+H  ++ G +    IFL  Q +  I +   +RRNGR+    
Sbjct: 96  AVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA 155

Query: 189 LAV 191
           LAV
Sbjct: 156 LAV 158


>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
           Resolution
 pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
           An Open Pore State
 pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
           Observed In Loosely Packed 3d-Crystals
          Length = 263

 Score = 30.4 bits (67), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 135 AINHSVSPPFKVKPMKKSTIHVQLATGDSL---IFLNHQLLQKINS---QRRNGRMVVFG 188
           A+ +SV+PP     +  +T+H  ++ G +    IFL  Q +  I +   +RRNGR+    
Sbjct: 102 AVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA 161

Query: 189 LAV 191
           LAV
Sbjct: 162 LAV 164


>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
           State
          Length = 263

 Score = 30.4 bits (67), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 135 AINHSVSPPFKVKPMKKSTIHVQLATGDSL---IFLNHQLLQKINS---QRRNGRMVVFG 188
           A+ +SV+PP     +  +T+H  ++ G +    IFL  Q +  I +   +RRNGR+    
Sbjct: 102 AVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA 161

Query: 189 LAV 191
           LAV
Sbjct: 162 LAV 164


>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
           Closed Water Pore
          Length = 235

 Score = 30.4 bits (67), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 135 AINHSVSPPFKVKPMKKSTIHVQLATGDSL---IFLNHQLLQKINS---QRRNGRMVVFG 188
           A+ +SV+PP     +  +T+H  ++ G +    IFL  Q +  I +   +RRNGR+    
Sbjct: 98  AVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA 157

Query: 189 LAV 191
           LAV
Sbjct: 158 LAV 160


>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 77  KLPSLHLDTFSVSNFTIGSTN-LIAKWDFNLTFKNPDHLWQIY-----------LDYIEC 124
           +L    LDTF  S  + G TN LI K+ F       + L+Q+            L++ +C
Sbjct: 202 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDC 261

Query: 125 IALNHDHFPIAINHSVSPPFKVKPMKKSTIHV 156
                 +F  + N  V  P KV+ +    +H+
Sbjct: 262 TLNGVGNFRASDNDRVIDPGKVETLTIRRLHI 293


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,789,332
Number of Sequences: 62578
Number of extensions: 249947
Number of successful extensions: 689
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 6
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)