Query 036189
Match_columns 241
No_of_seqs 151 out of 675
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 6.3E-05 2.1E-09 61.4 11.6 76 77-160 43-119 (174)
2 1xo8_A AT1G01470; structural g 97.8 3E-05 1E-09 61.9 6.2 76 77-160 20-96 (151)
3 3but_A Uncharacterized protein 97.5 0.0025 8.4E-08 49.9 12.3 90 98-199 16-106 (136)
4 3hd7_B Syntaxin-1A; membrane p 60.3 4.1 0.00014 30.0 2.0 6 63-68 97-102 (109)
5 2knc_B Integrin beta-3; transm 52.5 7.3 0.00025 27.1 2.1 17 56-72 17-33 (79)
6 2k9j_B Integrin beta-3; transm 40.2 19 0.00064 22.0 2.3 16 56-71 16-31 (43)
7 3s8f_C Cytochrome C oxidase po 35.9 11 0.00037 22.0 0.6 13 60-72 12-24 (34)
8 1zza_A Stannin, AG8_1; helix, 32.1 15 0.00051 25.2 1.0 26 52-77 16-41 (90)
9 2l8s_A Integrin alpha-1; trans 28.5 33 0.0011 22.1 2.1 24 56-79 16-41 (54)
10 2jp3_A FXYD domain-containing 27.6 44 0.0015 22.4 2.6 17 52-68 20-36 (67)
11 2jo1_A Phospholemman; FXYD1, N 27.6 44 0.0015 22.7 2.6 16 53-68 20-35 (72)
12 2lk9_A Bone marrow stromal ant 26.3 24 0.00083 20.4 1.0 8 49-56 6-13 (35)
13 2knc_A Integrin alpha-IIB; tra 26.3 37 0.0013 21.8 2.1 24 56-79 19-44 (54)
14 1wlp_A Cytochrome B-245 light 26.2 16 0.00054 19.8 0.2 12 29-40 11-22 (26)
15 2zxe_G FXYD10, phospholemman-l 23.9 59 0.002 22.2 2.8 17 52-68 22-38 (74)
16 3vmt_A Monofunctional glycosyl 23.4 28 0.00096 29.7 1.4 13 44-56 32-44 (263)
17 2l0d_A Cell surface protein; s 23.4 2.1E+02 0.0073 20.8 6.1 58 79-147 3-60 (114)
18 2k1a_A Integrin alpha-IIB; sin 22.4 52 0.0018 19.9 2.1 14 58-71 19-32 (42)
19 1nrp_R Receptor based peptide 22.2 15 0.00051 19.4 -0.4 15 106-120 6-20 (26)
20 3kdp_B Sodium/potassium-transp 21.8 56 0.0019 28.1 3.0 31 63-94 33-63 (286)
21 1nro_R Receptor based peptide 20.1 22 0.00076 18.9 0.0 14 106-119 6-19 (27)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.02 E-value=6.3e-05 Score=61.44 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEEEE
Q 036189 77 KLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKSTIH 155 (241)
Q Consensus 77 k~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~v~ 155 (241)
+.|+++|.++.+..++.. ..++.+.+.+.|||. ..+.+..++-.+.-.|.. ++++.++ ++..++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~---lasG~s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYS-QSIPICQISYILKSATRT---IASGTIPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSC---EEEEEESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCC-CCccccceEEEEEECCEE---EEEEecCCCceECCCCcEEEE
Confidence 679999999999887654 478999999999998 999999999999999998 9999887 5999999999999
Q ss_pred EEEEe
Q 036189 156 VQLAT 160 (241)
Q Consensus 156 v~l~~ 160 (241)
+.++.
T Consensus 115 Vpv~v 119 (174)
T 1yyc_A 115 VPVKV 119 (174)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88888
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.81 E-value=3e-05 Score=61.90 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=66.2
Q ss_pred CCCEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCC-CceecCCCeEEEE
Q 036189 77 KLPSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSP-PFKVKPMKKSTIH 155 (241)
Q Consensus 77 k~P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp-~F~q~~~~tt~v~ 155 (241)
+.|+++|.++.+..++. ...++.+.+.++|||. ..+.+..++..+.-.|.. ++++..+ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~---lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGRE---IGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSC---EEEEEEEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEE---EEEEecCCCcEECCCCcEEEE
Confidence 56999999999977644 4568999999999998 999999999999889998 9999886 6999999999988
Q ss_pred EEEEe
Q 036189 156 VQLAT 160 (241)
Q Consensus 156 v~l~~ 160 (241)
+.++.
T Consensus 92 vpv~v 96 (151)
T 1xo8_A 92 IPVVV 96 (151)
T ss_dssp ECCCE
T ss_pred EEEEE
Confidence 77766
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.45 E-value=0.0025 Score=49.86 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=65.7
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeecc-CCCceecCCCeEEEEEEEEeCCceeecCHHHHHHHH
Q 036189 98 LIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSV-SPPFKVKPMKKSTIHVQLATGDSLIFLNHQLLQKIN 176 (241)
Q Consensus 98 l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~-vp~F~q~~~~tt~v~v~l~~~~~~~~l~~~~~~~l~ 176 (241)
-...+.+++.+.|||. ..+.++.++..++..|.. +|++. ...+..++.+++.+.+.+.... ..+.+ .+.
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~---la~G~s~~~~~I~~~g~~~v~v~~~i~~--~~l~~----~~~ 85 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVK---VADGYENSPVTVKPASATTLKFSLRLNN--SFLRE----WWV 85 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEE---EEEEEECCCEEECTTCEEEEEEEEEEEH--HHHTT----HHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEE---EEeeeecCceEECCCCcEEEEEEEEEch--HHhHH----HHH
Confidence 4577999999999997 999999999999999998 99987 6689999999998988887721 12233 344
Q ss_pred HHhhCCceEEEEEEEEEEEEEEE
Q 036189 177 SQRRNGRMVVFGLAVRAKTRFTG 199 (241)
Q Consensus 177 ~d~~~G~~v~~~v~v~~~vr~kv 199 (241)
+-..+|..-. ++++++..+++
T Consensus 86 ~hi~nge~s~--l~i~~~~~l~v 106 (136)
T 3but_A 86 THIANGEKTK--IRVAIKPTIEI 106 (136)
T ss_dssp HHHHTTSEEE--EEEEEEEEEEC
T ss_pred HHhhcCCceE--EEEEEEEEEEe
Confidence 4444564233 34444445555
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=60.27 E-value=4.1 Score=29.98 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.2
Q ss_pred HHHHhh
Q 036189 63 TALICI 68 (241)
Q Consensus 63 lgl~~l 68 (241)
+.++++
T Consensus 97 ~~i~~~ 102 (109)
T 3hd7_B 97 GIIIAS 102 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.47 E-value=7.3 Score=27.09 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhheeeE
Q 036189 56 VAASISLTALICILMYF 72 (241)
Q Consensus 56 ~~~~i~llgl~~lil~l 72 (241)
+++.++++|++++++|-
T Consensus 17 vi~gilliGllllliwk 33 (79)
T 2knc_B 17 VMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33356788888888773
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=40.16 E-value=19 Score=21.97 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhheee
Q 036189 56 VAASISLTALICILMY 71 (241)
Q Consensus 56 ~~~~i~llgl~~lil~ 71 (241)
+++.++++|++++++|
T Consensus 16 vi~~ivliGl~lLliw 31 (43)
T 2k9j_B 16 VMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334678888888877
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=35.93 E-value=11 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=8.5
Q ss_pred HHHHHHHhheeeE
Q 036189 60 ISLTALICILMYF 72 (241)
Q Consensus 60 i~llgl~~lil~l 72 (241)
++++|+.++++|+
T Consensus 12 V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 12 ILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566777777774
No 8
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=32.07 E-value=15 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhheeeEEecCC
Q 036189 52 TLLVVAASISLTALICILMYFTLGPK 77 (241)
Q Consensus 52 ~~~~~~~~i~llgl~~lil~lv~rPk 77 (241)
+++++++.+..+|++++.-|..+|-+
T Consensus 16 tv~viliavaalg~li~gcwcylrlq 41 (90)
T 1zza_A 16 TVIVILIAIAALGALILGCWCYLRLQ 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555666777777778777654
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.48 E-value=33 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhheeeE--EecCCCC
Q 036189 56 VAASISLTALICILMYF--TLGPKLP 79 (241)
Q Consensus 56 ~~~~i~llgl~~lil~l--v~rPk~P 79 (241)
+++.+++++++++++|- .|+-+.|
T Consensus 16 vl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 33345777778888883 4555443
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.58 E-value=44 Score=22.39 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036189 52 TLLVVAASISLTALICI 68 (241)
Q Consensus 52 ~~~~~~~~i~llgl~~l 68 (241)
..+++.++++++||+++
T Consensus 20 gGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHH
Confidence 34444444566666544
No 11
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=27.57 E-value=44 Score=22.65 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 036189 53 LLVVAASISLTALICI 68 (241)
Q Consensus 53 ~~~~~~~i~llgl~~l 68 (241)
.+++.++++++||+++
T Consensus 20 GLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 20 GLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444444566665444
No 12
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=26.34 E-value=24 Score=20.39 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 036189 49 IIITLLVV 56 (241)
Q Consensus 49 ~~~~~~~~ 56 (241)
.+.+.+++
T Consensus 6 ~lg~Gvl~ 13 (35)
T 2lk9_A 6 LLGIGILV 13 (35)
T ss_dssp HHHHHHHH
T ss_pred eecccHHH
Confidence 44333333
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.30 E-value=37 Score=21.78 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhheeeE--EecCCCC
Q 036189 56 VAASISLTALICILMYF--TLGPKLP 79 (241)
Q Consensus 56 ~~~~i~llgl~~lil~l--v~rPk~P 79 (241)
+++.++++.++++++|- .|+-+.|
T Consensus 19 vl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 33345677778888883 4555443
No 14
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=26.18 E-value=16 Score=19.84 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCC
Q 036189 29 LPPSRPPHYQHF 40 (241)
Q Consensus 29 ~p~~~~p~~~~~ 40 (241)
.||+|+|...|+
T Consensus 11 nPPPRpPae~r~ 22 (26)
T 1wlp_A 11 NPPPRPPAEARK 22 (26)
T ss_dssp SCCCCCCHHHHH
T ss_pred CcCCCCchHHcc
Confidence 355666655443
No 15
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.93 E-value=59 Score=22.19 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036189 52 TLLVVAASISLTALICI 68 (241)
Q Consensus 52 ~~~~~~~~i~llgl~~l 68 (241)
..+++.++++++||+++
T Consensus 22 gGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 22 VGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHH
Confidence 34445444566665444
No 16
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=23.41 E-value=28 Score=29.68 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=4.0
Q ss_pred CchhhhHHHHHHH
Q 036189 44 KLPKLIIITLLVV 56 (241)
Q Consensus 44 ~~~rc~~~~~~~~ 56 (241)
+..|.+.+.++++
T Consensus 32 ~~~~~~~~~~~~~ 44 (263)
T 3vmt_A 32 KSKRILLKILLTI 44 (263)
T ss_dssp ---CCTTHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3334444333333
No 17
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=23.41 E-value=2.1e+02 Score=20.77 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=33.7
Q ss_pred CEEEEeeEEEeeeecCCCceeEEEEEEEEEeCCCCeeEEEEccEEEEEEeCCcccceeeeccCCCceec
Q 036189 79 PSLHLDTFSVSNFTIGSTNLIAKWDFNLTFKNPDHLWQIYLDYIECIALNHDHFPIAINHSVSPPFKVK 147 (241)
Q Consensus 79 P~f~V~s~~l~~f~~~~~~l~~~~~~~l~v~NPN~k~~i~Y~~~~v~v~Y~g~~~~~lg~~~vp~F~q~ 147 (241)
|...|.+++-+. +.-+-..+++++++|.=.... ....+.++..|.. ++...+++.--|
T Consensus 3 PDL~vt~itP~~-----~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~---v~t~~v~~LaaG 60 (114)
T 2l0d_A 3 PDLVPVSLTPVT-----VVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIV---VDTQTVTSLESE 60 (114)
T ss_dssp CCEEEEEEECSE-----ECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEE---EEEEEESCBCBT
T ss_pred CCcEEEeccCCC-----cCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEE---EcceecccccCC
Confidence 455555553222 233456678888998754222 4456677778877 777766554333
No 18
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.37 E-value=52 Score=19.94 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=9.4
Q ss_pred HHHHHHHHHhheee
Q 036189 58 ASISLTALICILMY 71 (241)
Q Consensus 58 ~~i~llgl~~lil~ 71 (241)
+.++++.++++++|
T Consensus 19 ~GLllL~li~~~Lw 32 (42)
T 2k1a_A 19 GGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777777777
No 19
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=22.16 E-value=15 Score=19.40 Aligned_cols=15 Identities=13% Similarity=0.614 Sum_probs=10.1
Q ss_pred EEEeCCCCeeEEEEc
Q 036189 106 LTFKNPDHLWQIYLD 120 (241)
Q Consensus 106 l~v~NPN~k~~i~Y~ 120 (241)
+..+|||.|..-.++
T Consensus 6 fllrnpndkyepfwe 20 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhcCCCcccCcccc
Confidence 456999987654443
No 20
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=21.83 E-value=56 Score=28.10 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=18.9
Q ss_pred HHHHhheeeEEecCCCCEEEEeeEEEeeeecC
Q 036189 63 TALICILMYFTLGPKLPSLHLDTFSVSNFTIG 94 (241)
Q Consensus 63 lgl~~lil~lv~rPk~P~f~V~s~~l~~f~~~ 94 (241)
+++.+.+++..+-|+.|++. +...-.++.+.
T Consensus 33 Fa~~m~v~l~TLd~~~Pkyq-d~~~~PGL~~~ 63 (286)
T 3kdp_B 33 FIGTIQVMLLTISEFKPTYQ-DRVAPPGLTQI 63 (286)
T ss_dssp HHHHHHGGGSCSCSSSCSCC-TTTCSCCCCBS
T ss_pred HHHHHHHHHHhCcccCCccc-CCCCCCcceec
Confidence 33344455556889999999 65543444444
No 21
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=20.14 E-value=22 Score=18.91 Aligned_cols=14 Identities=14% Similarity=0.593 Sum_probs=9.3
Q ss_pred EEEeCCCCeeEEEE
Q 036189 106 LTFKNPDHLWQIYL 119 (241)
Q Consensus 106 l~v~NPN~k~~i~Y 119 (241)
+..+|||.|..-.+
T Consensus 6 fllrnpndkyepfw 19 (27)
T 1nro_R 6 FLLRNPNDKYEPFW 19 (27)
T ss_pred ccccCCCcccCccc
Confidence 45689998755443
Done!