BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036193
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
 pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
          Length = 187

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 83  HVTFITLEVQCRTCSGSGDRLVGRATLLVS----DFIGGYVPENHLNFLSYLLRDARGIR 138
           H+  +  + Q   C   GD  VG+  LL+S     F G Y+P    N+ + ++ D + + 
Sbjct: 3   HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVN 62

Query: 139 SGILNVS 145
            G+ + +
Sbjct: 63  LGLWDTA 69


>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
 pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
          Length = 204

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 83  HVTFITLEVQCRTCSGSGDRLVGRATLLVS----DFIGGYVPENHLNFLSYLLRDARGIR 138
           H+  +  + Q   C   GD  VG+  LL+S     F G Y+P    N+ + ++ D + + 
Sbjct: 20  HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN 79

Query: 139 SGILNVS 145
            G+ + +
Sbjct: 80  LGLWDTA 86


>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
 pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
          Length = 204

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 83  HVTFITLEVQCRTCSGSGDRLVGRATLLVS----DFIGGYVPENHLNFLSYLLRDARGIR 138
           H+  +  + Q   C   GD  VG+  LL+S     F G Y+P    N+ + ++ D + + 
Sbjct: 20  HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN 79

Query: 139 SGILNVS 145
            G+ + +
Sbjct: 80  LGLWDTA 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,319
Number of Sequences: 62578
Number of extensions: 219532
Number of successful extensions: 397
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 5
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)