BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036193
         (198 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
          Length = 207

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 95/135 (70%), Gaps = 3/135 (2%)

Query: 17  SCSSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKL 76
           S S+  R++EI V+SAE L+VD + +KKK ++VV++D   +  +KVD +GGSYP W ++ 
Sbjct: 2   SYSTFKRSLEIEVISAEGLKVDRKPLKKKTYSVVRIDE-KSWASKVDELGGSYPIWKDRF 60

Query: 77  VMKLPMH--VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA 134
            M++P++  V FI++EV  RT     D+ VG A + V+DF+GG+ P+ HLNFLSY LRD 
Sbjct: 61  DMEMPINASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGHLNFLSYRLRDE 120

Query: 135 RGIRSGILNVSVRVK 149
            G + GI+NVS+ VK
Sbjct: 121 YGDKCGIVNVSIMVK 135


>sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1
          Length = 192

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 19/183 (10%)

Query: 22  SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP 81
           ++T+EI + SAE L+++ R +KKK FAVVK+D    R + +D    S P W+ K  M + 
Sbjct: 17  TKTLEIDLRSAEGLKLNRRPIKKKTFAVVKIDE-KCRKSNLDESRRSNPTWNYKSEMPIN 75

Query: 82  MHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGI 141
            +  FI +EV  RT SG  D+ +G A +  +DF+G Y PE HLNFLSY LRD  G + GI
Sbjct: 76  GNEQFIFIEVFYRTGSGH-DKKIGEAKIPTNDFMGRYSPEGHLNFLSYRLRDEFGDKCGI 134

Query: 142 LNVSVRVKEGSGLGLLKSRYEYCSSS--------PSAQQKPVIGADAKKFNGLVAEIPVW 193
           +N+S+ VK           Y  CSS         P  +   + G   +   G    +PVW
Sbjct: 135 VNLSILVKSDP-----TRDYGACSSQAAVTGLWRPRLETASIDGYGGRTVTG----VPVW 185

Query: 194 NPY 196
             Y
Sbjct: 186 GLY 188


>sp|Q6WKZ4|RFIP1_HUMAN Rab11 family-interacting protein 1 OS=Homo sapiens GN=RAB11FIP1
           PE=1 SV=2
          Length = 1283

 Score = 32.0 bits (71), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 25  VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKL---- 80
           V++TVL A  LR  G      A+AV+++       T V       P W E+   +L    
Sbjct: 20  VQVTVLQARGLRAKGPGGTSDAYAVIQVG-KEKYATSVSERSLGAPVWREEATFELPSLL 78

Query: 81  ---PMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDF 114
              P     + L V  R   G  D+ +GRA + + D 
Sbjct: 79  SSGPAAAATLQLTVLHRALLGL-DKFLGRAEVDLRDL 114


>sp|Q9N179|41_BOVIN Protein 4.1 OS=Bos taurus GN=EPB41 PE=2 SV=1
          Length = 617

 Score = 30.8 bits (68), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 1   PSPSHPQKSESLHMENSCSSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVT 60
           PS +  +K E L  EN    HS       L  EDL      +KK   ++ +L     +  
Sbjct: 396 PSEAWKKKRERLDGENIYIRHSN------LMLEDLDKSQEEIKKHHASISEL-----KKN 444

Query: 61  KVDAIGGSYPA-WDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLVGRATLLVSD 113
            ++++    P+ WD++L      H  F TL +  +  +G G  LV   T+ +SD
Sbjct: 445 FMESVPEPRPSEWDKRL----STHSPFRTLNINGQIPTGEGPPLVKTQTVTISD 494


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,354,173
Number of Sequences: 539616
Number of extensions: 2895011
Number of successful extensions: 6009
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6003
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)