Query 036193
Match_columns 198
No_of_seqs 164 out of 1429
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.7E-26 3.8E-31 174.5 15.3 119 22-148 1-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 2E-25 4.3E-30 168.2 12.6 120 24-144 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.9 5.9E-24 1.3E-28 158.5 13.8 117 23-148 1-118 (118)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.9E-23 4.2E-28 156.7 14.9 120 24-150 1-121 (121)
5 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.4E-23 3.1E-28 164.0 14.0 126 24-152 1-135 (150)
6 cd08682 C2_Rab11-FIP_classI C2 99.9 1.3E-23 2.9E-28 158.8 13.4 117 25-147 1-126 (126)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 2.7E-23 5.8E-28 158.1 13.5 113 24-144 1-125 (126)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 5.1E-23 1.1E-27 156.4 14.3 124 24-149 1-133 (133)
9 cd04022 C2A_MCTP_PRT_plant C2 99.9 5.9E-23 1.3E-27 155.4 13.6 119 24-149 1-126 (127)
10 cd08378 C2B_MCTP_PRT_plant C2 99.9 6.4E-23 1.4E-27 154.6 13.6 118 24-149 1-120 (121)
11 cd04015 C2_plant_PLD C2 domain 99.9 1E-22 2.2E-27 160.3 15.1 120 22-149 6-158 (158)
12 cd08678 C2_C21orf25-like C2 do 99.9 3.2E-22 7E-27 151.3 15.5 120 25-153 1-124 (126)
13 cd04044 C2A_Tricalbin-like C2 99.9 2.6E-22 5.7E-27 150.2 14.0 121 23-150 2-124 (124)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 6.2E-22 1.4E-26 149.2 15.1 117 25-148 2-121 (121)
15 cd08377 C2C_MCTP_PRT C2 domain 99.9 7.7E-22 1.7E-26 147.0 14.2 117 23-149 1-119 (119)
16 cd08400 C2_Ras_p21A1 C2 domain 99.9 1E-21 2.2E-26 148.9 15.0 119 22-151 3-125 (126)
17 cd04046 C2_Calpain C2 domain p 99.9 1.1E-21 2.4E-26 148.5 15.2 120 22-152 2-125 (126)
18 cd08375 C2_Intersectin C2 doma 99.9 1.5E-21 3.2E-26 150.2 15.4 123 20-148 12-135 (136)
19 KOG1030 Predicted Ca2+-depende 99.9 6.7E-22 1.5E-26 155.0 10.6 96 20-118 3-98 (168)
20 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 3E-21 6.5E-26 145.2 13.7 117 25-147 2-120 (121)
21 cd08382 C2_Smurf-like C2 domai 99.9 4.4E-21 9.6E-26 144.7 13.9 116 24-146 1-122 (123)
22 cd04014 C2_PKC_epsilon C2 doma 99.9 8.1E-21 1.7E-25 144.6 15.2 121 20-151 1-131 (132)
23 cd04036 C2_cPLA2 C2 domain pre 99.9 5.8E-21 1.3E-25 142.8 13.9 114 25-149 2-118 (119)
24 cd08376 C2B_MCTP_PRT C2 domain 99.9 7.6E-21 1.6E-25 141.2 14.4 114 24-149 1-115 (116)
25 cd04024 C2A_Synaptotagmin-like 99.9 4.5E-21 9.8E-26 144.4 13.2 121 23-148 1-128 (128)
26 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 6.9E-21 1.5E-25 143.1 13.8 116 24-147 1-123 (123)
27 cd08395 C2C_Munc13 C2 domain t 99.9 6.8E-21 1.5E-25 143.7 12.7 103 24-134 1-113 (120)
28 cd08373 C2A_Ferlin C2 domain f 99.9 3.4E-20 7.3E-25 140.2 14.7 116 29-154 2-121 (127)
29 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3E-20 6.5E-25 138.5 13.0 114 23-148 1-121 (121)
30 cd08394 C2A_Munc13 C2 domain f 99.8 2.8E-20 6.2E-25 141.1 12.2 100 23-133 2-101 (127)
31 cd04049 C2_putative_Elicitor-r 99.8 3.8E-20 8.3E-25 139.2 12.9 104 23-133 1-108 (124)
32 cd08381 C2B_PI3K_class_II C2 d 99.8 2.9E-20 6.4E-25 140.3 11.8 102 22-131 12-121 (122)
33 cd04017 C2D_Ferlin C2 domain f 99.8 1.3E-19 2.9E-24 138.7 15.3 122 24-151 2-134 (135)
34 cd04027 C2B_Munc13 C2 domain s 99.8 7.4E-20 1.6E-24 138.7 13.5 114 24-146 2-127 (127)
35 cd04050 C2B_Synaptotagmin-like 99.8 4.6E-20 1E-24 135.3 11.0 101 24-133 1-102 (105)
36 cd04010 C2B_RasA3 C2 domain se 99.8 6.6E-20 1.4E-24 143.1 12.3 104 24-135 1-124 (148)
37 cd04021 C2_E3_ubiquitin_ligase 99.8 3.1E-19 6.8E-24 135.1 15.0 120 23-146 2-124 (125)
38 cd04028 C2B_RIM1alpha C2 domai 99.8 1.2E-19 2.7E-24 141.2 13.0 108 21-135 27-140 (146)
39 cd04040 C2D_Tricalbin-like C2 99.8 1.5E-19 3.3E-24 133.9 12.8 113 25-144 1-114 (115)
40 cd08677 C2A_Synaptotagmin-13 C 99.8 8.5E-20 1.9E-24 137.1 11.4 92 20-116 11-108 (118)
41 cd08691 C2_NEDL1-like C2 domai 99.8 4.4E-19 9.6E-24 136.7 15.0 117 24-146 2-136 (137)
42 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.9E-19 4.1E-24 137.1 12.8 108 20-131 12-127 (128)
43 cd04043 C2_Munc13_fungal C2 do 99.8 4.9E-19 1.1E-23 133.3 15.0 119 24-151 2-123 (126)
44 cd04045 C2C_Tricalbin-like C2 99.8 2E-19 4.3E-24 135.4 12.5 105 23-135 1-105 (120)
45 cd04041 C2A_fungal C2 domain f 99.8 1.2E-19 2.7E-24 134.3 10.5 93 23-117 1-100 (111)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.4E-19 7.5E-24 135.0 13.0 106 20-132 12-125 (125)
47 cd04011 C2B_Ferlin C2 domain s 99.8 4E-19 8.6E-24 131.4 12.8 104 22-134 3-111 (111)
48 cd04039 C2_PSD C2 domain prese 99.8 1.8E-19 3.9E-24 133.4 10.9 93 23-118 1-99 (108)
49 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.1E-19 6.8E-24 134.2 12.3 106 20-132 13-123 (124)
50 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.8E-19 6.1E-24 135.3 12.0 105 20-131 12-124 (125)
51 cd08688 C2_KIAA0528-like C2 do 99.8 2.1E-19 4.5E-24 132.9 10.7 104 25-133 1-109 (110)
52 cd04013 C2_SynGAP_like C2 doma 99.8 1.1E-18 2.4E-23 135.7 14.4 122 22-154 10-144 (146)
53 cd08385 C2A_Synaptotagmin-1-5- 99.8 7.6E-19 1.7E-23 132.0 13.0 106 20-132 13-123 (124)
54 cd08690 C2_Freud-1 C2 domain f 99.8 1.6E-18 3.5E-23 136.1 14.9 123 24-153 3-141 (155)
55 cd08685 C2_RGS-like C2 domain 99.8 3.6E-19 7.9E-24 133.9 10.8 103 21-131 10-119 (119)
56 cd04031 C2A_RIM1alpha C2 domai 99.8 7.6E-19 1.7E-23 131.8 12.1 105 20-132 13-125 (125)
57 cd00275 C2_PLC_like C2 domain 99.8 2.3E-18 5E-23 129.4 14.5 116 23-148 2-127 (128)
58 PLN03008 Phospholipase D delta 99.8 1.6E-18 3.4E-23 163.6 16.3 125 22-154 13-182 (868)
59 cd04030 C2C_KIAA1228 C2 domain 99.8 1.9E-18 4.1E-23 130.1 13.2 105 20-131 13-126 (127)
60 cd08383 C2A_RasGAP C2 domain ( 99.8 1.7E-18 3.7E-23 128.4 12.6 111 25-148 2-117 (117)
61 cd08680 C2_Kibra C2 domain fou 99.8 1.1E-18 2.4E-23 132.4 11.2 106 20-131 11-124 (124)
62 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.4E-18 5.1E-23 129.4 13.0 106 20-132 13-124 (125)
63 cd08521 C2A_SLP C2 domain firs 99.8 2.2E-18 4.7E-23 129.0 12.6 105 20-131 11-123 (123)
64 cd08388 C2A_Synaptotagmin-4-11 99.8 4.4E-18 9.6E-23 129.4 14.0 107 20-131 13-126 (128)
65 cd04032 C2_Perforin C2 domain 99.8 2.7E-18 5.9E-23 130.7 12.2 90 22-115 27-118 (127)
66 cd04038 C2_ArfGAP C2 domain pr 99.8 2.1E-18 4.6E-23 134.1 11.4 92 23-118 2-93 (145)
67 cd08389 C2A_Synaptotagmin-14_1 99.8 4.5E-18 9.7E-23 128.6 12.1 105 20-132 13-123 (124)
68 cd04018 C2C_Ferlin C2 domain t 99.8 4.1E-18 8.8E-23 133.4 11.8 107 24-134 1-126 (151)
69 cd08390 C2A_Synaptotagmin-15-1 99.8 1.3E-17 2.9E-22 124.9 14.0 106 20-132 11-122 (123)
70 cd04052 C2B_Tricalbin-like C2 99.8 4.6E-18 1E-22 126.0 11.1 103 39-151 8-111 (111)
71 cd04009 C2B_Munc13-like C2 dom 99.8 5.3E-18 1.2E-22 129.5 10.9 96 20-117 13-119 (133)
72 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.5E-17 3.3E-22 131.5 11.4 107 20-133 24-138 (162)
73 cd08675 C2B_RasGAP C2 domain s 99.7 1.7E-17 3.8E-22 127.6 11.3 103 25-135 1-122 (137)
74 cd08406 C2B_Synaptotagmin-12 C 99.7 2.1E-17 4.5E-22 127.2 11.1 92 20-113 12-110 (136)
75 cd08676 C2A_Munc13-like C2 dom 99.7 2.1E-17 4.6E-22 129.6 11.2 102 18-131 23-153 (153)
76 cd04026 C2_PKC_alpha_gamma C2 99.7 2.6E-17 5.7E-22 124.8 11.2 105 22-134 12-122 (131)
77 cd08404 C2B_Synaptotagmin-4 C2 99.7 8.9E-18 1.9E-22 128.5 8.4 112 20-140 12-130 (136)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.7 4.2E-17 9E-22 124.0 11.0 110 20-138 10-126 (133)
79 cd04037 C2E_Ferlin C2 domain f 99.7 6.2E-17 1.3E-21 122.3 11.8 91 24-116 1-93 (124)
80 cd08407 C2B_Synaptotagmin-13 C 99.7 3.7E-17 8E-22 126.1 10.7 93 19-113 11-112 (138)
81 cd08402 C2B_Synaptotagmin-1 C2 99.7 6.7E-17 1.5E-21 123.5 11.1 95 18-114 10-111 (136)
82 cd08405 C2B_Synaptotagmin-7 C2 99.7 7.3E-17 1.6E-21 123.4 11.0 93 20-114 12-111 (136)
83 cd08686 C2_ABR C2 domain in th 99.7 2.6E-16 5.6E-21 118.1 13.6 81 25-112 1-91 (118)
84 cd08403 C2B_Synaptotagmin-3-5- 99.7 8.7E-17 1.9E-21 122.6 10.9 92 19-112 10-108 (134)
85 cd08410 C2B_Synaptotagmin-17 C 99.7 1.1E-16 2.4E-21 122.6 11.5 90 20-111 11-107 (135)
86 cd04048 C2A_Copine C2 domain f 99.7 1.7E-16 3.8E-21 118.8 12.1 98 28-132 5-113 (120)
87 cd08408 C2B_Synaptotagmin-14_1 99.7 1.2E-16 2.7E-21 123.1 11.3 94 19-114 11-112 (138)
88 cd04035 C2A_Rabphilin_Doc2 C2 99.7 2.2E-16 4.8E-21 118.5 12.2 95 20-117 12-114 (123)
89 cd08409 C2B_Synaptotagmin-15 C 99.7 1.3E-16 2.7E-21 122.7 11.0 93 20-115 12-111 (137)
90 cd08692 C2B_Tac2-N C2 domain s 99.7 1.2E-16 2.6E-21 122.7 10.7 95 19-114 10-110 (135)
91 cd00276 C2B_Synaptotagmin C2 d 99.7 1.5E-16 3.2E-21 120.5 10.2 109 20-137 11-126 (134)
92 PLN03200 cellulose synthase-in 99.7 7.1E-17 1.5E-21 163.8 10.7 119 21-150 1978-2101(2102)
93 KOG1028 Ca2+-dependent phospho 99.7 1.9E-15 4.1E-20 135.8 14.3 123 22-151 166-296 (421)
94 PF00168 C2: C2 domain; Inter 99.7 1.2E-15 2.6E-20 105.5 10.2 82 25-108 1-85 (85)
95 PLN02270 phospholipase D alpha 99.6 4.1E-15 8.9E-20 140.4 15.9 126 22-154 7-153 (808)
96 cd04047 C2B_Copine C2 domain s 99.6 2.1E-15 4.5E-20 111.0 10.9 89 26-117 3-101 (110)
97 KOG0696 Serine/threonine prote 99.6 1.2E-16 2.5E-21 141.2 3.5 104 22-133 179-288 (683)
98 PLN02223 phosphoinositide phos 99.6 1.8E-14 3.9E-19 131.4 13.8 117 22-148 408-534 (537)
99 COG5038 Ca2+-dependent lipid-b 99.6 2.8E-14 6E-19 137.4 14.6 145 3-154 416-562 (1227)
100 KOG1011 Neurotransmitter relea 99.6 8.5E-15 1.8E-19 134.2 8.3 126 17-151 289-426 (1283)
101 PLN02952 phosphoinositide phos 99.6 9.3E-14 2E-18 128.7 15.1 120 20-149 467-597 (599)
102 smart00239 C2 Protein kinase C 99.5 8.5E-14 1.8E-18 98.0 11.1 93 24-118 1-96 (101)
103 cd00030 C2 C2 domain. The C2 d 99.5 2.7E-13 5.8E-18 94.6 10.7 89 25-115 1-90 (102)
104 PLN02230 phosphoinositide phos 99.5 4.1E-13 8.8E-18 124.3 12.3 118 21-148 467-597 (598)
105 PLN02228 Phosphoinositide phos 99.5 1E-12 2.3E-17 121.1 14.2 121 22-152 430-564 (567)
106 KOG0169 Phosphoinositide-speci 99.4 5.5E-13 1.2E-17 124.3 11.4 119 23-150 616-745 (746)
107 PLN02222 phosphoinositide phos 99.4 2.6E-12 5.5E-17 118.9 13.8 117 22-148 451-580 (581)
108 KOG2059 Ras GTPase-activating 99.4 5.5E-13 1.2E-17 123.1 9.4 123 23-153 5-129 (800)
109 COG5038 Ca2+-dependent lipid-b 99.4 6.4E-13 1.4E-17 128.2 10.1 127 22-155 1039-1167(1227)
110 cd08374 C2F_Ferlin C2 domain s 99.4 3.7E-12 8.1E-17 97.6 10.5 93 24-118 1-125 (133)
111 cd08689 C2_fungal_Pkc1p C2 dom 99.4 1.4E-12 3E-17 95.6 6.5 86 25-117 1-89 (109)
112 PLN02352 phospholipase D epsil 99.3 2.8E-11 6.1E-16 114.3 13.3 120 21-154 8-135 (758)
113 KOG1028 Ca2+-dependent phospho 99.3 3.7E-11 8.1E-16 108.1 10.6 92 20-113 295-393 (421)
114 KOG1264 Phospholipase C [Lipid 99.2 4.2E-11 9.1E-16 112.3 10.1 101 22-133 1064-1171(1267)
115 KOG1031 Predicted Ca2+-depende 99.0 3.7E-09 8E-14 96.8 9.9 127 21-150 1-137 (1169)
116 KOG1328 Synaptic vesicle prote 98.9 2.8E-10 6.1E-15 105.9 1.4 127 20-153 111-305 (1103)
117 KOG1328 Synaptic vesicle prote 98.8 8.6E-10 1.9E-14 102.7 1.7 92 22-115 946-1048(1103)
118 KOG2059 Ras GTPase-activating 98.5 2.2E-07 4.7E-12 86.7 7.2 109 41-155 148-282 (800)
119 KOG1265 Phospholipase C [Lipid 98.4 1.1E-06 2.4E-11 83.8 8.6 102 22-140 702-812 (1189)
120 KOG0905 Phosphoinositide 3-kin 98.3 5.4E-07 1.2E-11 87.9 4.8 108 19-133 1520-1635(1639)
121 cd08683 C2_C2cd3 C2 domain fou 98.3 6.5E-07 1.4E-11 68.1 4.1 102 25-131 1-143 (143)
122 KOG1013 Synaptic vesicle prote 98.2 2.1E-07 4.5E-12 80.3 -1.1 125 22-149 92-229 (362)
123 KOG3837 Uncharacterized conser 98.1 2.6E-06 5.7E-11 75.6 4.8 125 22-152 366-506 (523)
124 KOG1011 Neurotransmitter relea 98.1 1.8E-05 3.9E-10 73.8 9.1 103 23-134 1125-1238(1283)
125 KOG1326 Membrane-associated pr 97.9 5.8E-06 1.3E-10 79.7 2.9 91 20-112 610-702 (1105)
126 KOG1013 Synaptic vesicle prote 97.9 2.5E-05 5.4E-10 67.7 5.6 87 20-108 230-323 (362)
127 PLN02964 phosphatidylserine de 97.8 3.5E-05 7.5E-10 72.8 6.0 88 22-118 53-141 (644)
128 cd08684 C2A_Tac2-N C2 domain f 97.8 4.1E-05 8.8E-10 54.7 4.5 88 26-117 2-95 (103)
129 PF10358 NT-C2: N-terminal C2 97.6 0.0059 1.3E-07 46.5 14.2 121 23-152 7-138 (143)
130 KOG1326 Membrane-associated pr 97.4 4.8E-05 1E-09 73.6 0.5 112 25-146 208-329 (1105)
131 cd08398 C2_PI3K_class_I_alpha 97.3 0.0019 4.1E-08 50.9 9.2 86 23-113 8-105 (158)
132 KOG2060 Rab3 effector RIM1 and 97.3 0.0002 4.4E-09 63.0 3.7 110 21-135 267-381 (405)
133 cd08693 C2_PI3K_class_I_beta_d 97.2 0.0025 5.3E-08 51.0 8.7 70 23-95 8-86 (173)
134 PF12416 DUF3668: Cep120 prote 97.1 0.027 5.9E-07 49.7 14.6 122 25-154 2-137 (340)
135 PF15627 CEP76-C2: CEP76 C2 do 97.0 0.018 4E-07 45.2 11.6 128 20-152 6-153 (156)
136 PF11618 DUF3250: Protein of u 96.9 0.015 3.3E-07 42.9 9.5 97 47-150 2-106 (107)
137 cd08380 C2_PI3K_like C2 domain 96.9 0.0088 1.9E-07 46.6 8.6 88 23-113 8-106 (156)
138 cd04012 C2A_PI3K_class_II C2 d 96.8 0.0078 1.7E-07 47.8 8.3 92 21-113 6-118 (171)
139 cd08399 C2_PI3K_class_I_gamma 96.5 0.037 8.1E-07 44.5 10.4 71 23-95 10-88 (178)
140 cd08687 C2_PKN-like C2 domain 96.5 0.028 6.2E-07 40.4 8.2 85 43-148 8-92 (98)
141 KOG1452 Predicted Rho GTPase-a 96.2 0.009 1.9E-07 52.0 5.4 123 19-153 47-171 (442)
142 cd08397 C2_PI3K_class_III C2 d 96.2 0.021 4.6E-07 45.0 7.2 70 42-113 28-106 (159)
143 cd08694 C2_Dock-A C2 domains f 95.9 0.073 1.6E-06 43.4 9.0 55 57-112 54-114 (196)
144 PF00792 PI3K_C2: Phosphoinosi 95.8 0.063 1.4E-06 41.1 8.1 69 45-114 3-85 (142)
145 PF14429 DOCK-C2: C2 domain in 95.8 0.046 1E-06 43.7 7.5 56 57-113 60-120 (184)
146 KOG1327 Copine [Signal transdu 95.6 0.032 6.9E-07 51.7 6.4 85 29-116 142-236 (529)
147 cd08695 C2_Dock-B C2 domains f 95.0 0.083 1.8E-06 42.9 6.4 55 57-112 54-112 (189)
148 smart00142 PI3K_C2 Phosphoinos 94.2 0.31 6.8E-06 35.1 7.4 70 25-95 13-91 (100)
149 PF15625 CC2D2AN-C2: CC2D2A N- 94.2 0.27 5.8E-06 39.0 7.5 73 42-116 35-108 (168)
150 cd08679 C2_DOCK180_related C2 93.0 0.41 8.8E-06 38.1 6.8 52 61-113 57-115 (178)
151 KOG1329 Phospholipase D1 [Lipi 91.9 0.48 1E-05 46.4 6.7 102 44-152 138-243 (887)
152 cd08696 C2_Dock-C C2 domains f 91.9 0.72 1.6E-05 37.1 6.8 55 57-112 55-117 (179)
153 cd08697 C2_Dock-D C2 domains f 90.5 1.4 2.9E-05 35.7 7.2 56 57-113 57-123 (185)
154 PF06219 DUF1005: Protein of u 86.4 16 0.00034 33.3 11.6 110 42-152 34-170 (460)
155 PTZ00447 apical membrane antig 85.8 14 0.00029 33.1 10.7 117 25-154 60-178 (508)
156 KOG1327 Copine [Signal transdu 84.5 2.3 5.1E-05 39.6 5.8 61 57-118 42-106 (529)
157 PF14924 DUF4497: Protein of u 81.8 5.9 0.00013 29.1 6.1 66 85-150 29-105 (112)
158 PF07162 B9-C2: Ciliary basal 81.6 24 0.00051 27.7 10.5 81 25-112 4-102 (168)
159 PF14186 Aida_C2: Cytoskeletal 81.4 6.3 0.00014 30.7 6.3 92 23-117 13-115 (147)
160 KOG3543 Ca2+-dependent activat 78.1 23 0.00049 34.2 9.8 117 23-151 341-461 (1218)
161 KOG0694 Serine/threonine prote 67.0 4.1 8.8E-05 39.1 2.3 51 43-95 27-77 (694)
162 KOG0904 Phosphatidylinositol 3 63.7 30 0.00066 34.5 7.4 70 22-94 342-421 (1076)
163 PF14909 SPATA6: Spermatogenes 53.8 1E+02 0.0022 23.8 9.9 86 24-116 3-101 (140)
164 KOG4269 Rac GTPase-activating 53.2 9.9 0.00021 37.8 2.3 57 20-82 756-816 (1112)
165 PF12416 DUF3668: Cep120 prote 51.2 1.8E+02 0.0038 25.8 12.4 99 12-118 181-297 (340)
166 KOG2419 Phosphatidylserine dec 49.7 2.4 5.2E-05 40.6 -2.3 57 23-82 280-340 (975)
167 KOG0905 Phosphoinositide 3-kin 48.2 25 0.00055 36.3 4.2 98 19-116 631-751 (1639)
168 cd05137 RasGAP_CLA2_BUD2 CLA2/ 38.1 44 0.00094 30.2 3.9 47 103-154 1-49 (395)
169 COG5342 Invasion protein B, in 37.4 1.1E+02 0.0024 24.7 5.7 93 84-191 75-178 (181)
170 KOG1032 Uncharacterized conser 30.4 77 0.0017 30.3 4.4 70 24-95 98-168 (590)
171 PF08151 FerI: FerI (NUC094) d 29.2 1.9E+02 0.004 19.7 5.3 35 120-154 10-47 (72)
172 COG0483 SuhB Archaeal fructose 26.4 16 0.00035 30.8 -0.8 16 179-194 86-101 (260)
173 PF08174 Anillin: Cell divisio 23.1 3.2E+02 0.0069 20.3 5.9 48 47-94 37-89 (140)
174 PF12682 Flavodoxin_4: Flavodo 22.8 43 0.00093 25.9 1.1 18 179-196 70-87 (156)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.95 E-value=1.7e-26 Score=174.45 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=101.2
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d 101 (198)
.|.|+|+|++|++|+..+ ++++||||++++++ ++++|+++++++.||+|||+|.|.+......|.|+|||++ .+.+|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d-~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDER-AFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCC-CCcCC
Confidence 378999999999998777 78999999999976 6889999988779999999999999876678999999998 56679
Q ss_pred ceeEEEEEeCce-eeccccCCCcceeEEEEEEcCCC-CcceEEEEEEEE
Q 036193 102 RLVGRATLLVSD-FIGGYVPENHLNFLSYLLRDARG-IRSGILNVSVRV 148 (198)
Q Consensus 102 ~~lG~~~vpl~~-l~~~~~~~~~~~~~~~~L~~~~g-~~~G~L~l~v~f 148 (198)
++||++.|++.+ +..+.. ...||+|...++ +..|.|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~-----~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGET-----LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCC-----ccccEeCcCccCCCCceEEEEEEeC
Confidence 999999999964 554421 457999987655 467999999985
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.93 E-value=2e-25 Score=168.19 Aligned_cols=120 Identities=40% Similarity=0.646 Sum_probs=104.9
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-----CceEEEEEEecccCC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-----VTFITLEVQCRTCSG 98 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~v~V~d~~~~~ 98 (198)
+|+|+|++|++|+..+..+++||||+|++++.++.+|++.++++.||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~-~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER-PS 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC-CC
Confidence 589999999999988888999999999998756889999877679999999999999765 589999999988 45
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEE
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNV 144 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l 144 (198)
.+|++||++.+++.++..+...+......||+|.+++|+++|+|+|
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 6799999999999999987643334567899999999999999985
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.92 E-value=5.9e-24 Score=158.48 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=100.2
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCC
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d 101 (198)
|.|+|+|++|++|+..+..+++||||++++++ .+.+|+++++++.||+|||.|.|.+.. ....|.|+|||++ ..+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~--~~~~ 77 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD--KRKP 77 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC--CCCC
Confidence 57999999999999888889999999999986 578999887666999999999999975 3578999999988 4459
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEE
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRV 148 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f 148 (198)
++||++.+++.++..+.. ...||+|.. +++..|+|+|+++|
T Consensus 78 ~~iG~~~~~l~~~~~~~~-----~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 78 DLIGDTEVDLSPALKEGE-----FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred cceEEEEEecHHHhhcCC-----CCCcEEecc-CCcEeeEEEEEEEC
Confidence 999999999999876532 346899876 46789999999986
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.91 E-value=1.9e-23 Score=156.75 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=103.5
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCce
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~ 103 (198)
.|+|+|++|++|...+..+.+||||++.+++....+|++.+++ .||+|||+|.|.+......|.|+|||++ ...+|++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~l~~~v~D~d-~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKN-LNPVWDEKFTLPIEDVTQPLYIKVFDYD-RGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCC-CCCccceeEEEEecCCCCeEEEEEEeCC-CCCCCcc
Confidence 3899999999999888889999999999987567899999875 9999999999999765689999999998 4558999
Q ss_pred eEEEEEeCceeeccccCCCcceeEEEEEEcCCC-CcceEEEEEEEEEe
Q 036193 104 VGRATLLVSDFIGGYVPENHLNFLSYLLRDARG-IRSGILNVSVRVKE 150 (198)
Q Consensus 104 lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g-~~~G~L~l~v~f~~ 150 (198)
||.+.+++.++..+.. ...||+|.+.++ +..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999886532 456999987664 67899999999865
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=1.4e-23 Score=163.95 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=105.4
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCCc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~ 102 (198)
.|+|+|++|++|...+.++.+||||++++++ ++.+|++.++++.||+|||+|.|.+.. ..+.|.|+|+|++ ...+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~-~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV-GPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec-CCCCCC
Confidence 4899999999999888889999999999987 688999987756999999999999964 3579999999988 445799
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCCC--------CcceEEEEEEEEEecC
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG--------IRSGILNVSVRVKEGS 152 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g--------~~~G~L~l~v~f~~~~ 152 (198)
+||++.++|+++..+.. .......||+|.+..| +.+|+|+|.++|.+..
T Consensus 79 ~lG~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 79 PLGRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred eEEEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 99999999999876431 1233567999998653 5679999999999643
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=1.3e-23 Score=158.78 Aligned_cols=117 Identities=23% Similarity=0.378 Sum_probs=97.6
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC------CCceEEEEEEecccCC
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM------HVTFITLEVQCRTCSG 98 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~------~~~~L~v~V~d~~~~~ 98 (198)
++|+|++|+||...+..+.+||||+|.+++ .+.+|++.+++ .||+|||+|.|.+.. ....|.|+|||++ .+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~-~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN-LL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc-cc
Confidence 579999999999888888999999999975 58899999886 999999999999975 3579999999998 45
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC---CcceEEEEEEE
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG---IRSGILNVSVR 147 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g---~~~G~L~l~v~ 147 (198)
.+|++||++.|+|.++.... +.....||+|....+ +.+|+|+|+++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 67999999999999987421 112457999986433 56899999873
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.91 E-value=2.7e-23 Score=158.05 Aligned_cols=113 Identities=23% Similarity=0.296 Sum_probs=95.9
Q ss_pred EEEEEEEEccC---CCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCC--
Q 036193 24 TVEITVLSAED---LRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSG-- 98 (198)
Q Consensus 24 ~L~V~VisA~~---L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~-- 98 (198)
.|+|+|++|+| |+..+..+.+||||++++++ ++.||++.+++ .||+|||+|.|.+......|.|+|||++ ..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~~-~nP~WnE~f~f~v~~~~~~l~v~V~d~d-~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVEDS-SNPRWNEQYTWPVYDPCTVLTVGVFDNS-QSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccCC-CCCcceeEEEEEecCCCCEEEEEEEECC-Cccc
Confidence 38999999999 77788889999999999975 58899999875 9999999999999766679999999988 33
Q ss_pred ----CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC---CCcceEEEE
Q 036193 99 ----SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR---GIRSGILNV 144 (198)
Q Consensus 99 ----~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~---g~~~G~L~l 144 (198)
.+|++||++.++|.++..+. ....||+|...+ ++..|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 38999999999999987653 246799999754 356788875
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.90 E-value=5.1e-23 Score=156.44 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=103.9
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCC------CeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF------NNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCS 97 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~------~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~ 97 (198)
+|+|+|++|++|...+..+.+||||++++.+. .+.+|++.+++ .||+|||+|.|.+......|.|+|||++ .
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT-LNPKWNEEFFFRVNPREHRLLFEVFDEN-R 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC-CCCcEeeEEEEEEcCCCCEEEEEEEECC-C
Confidence 48999999999998888889999999999753 25689988775 9999999999999876678999999998 4
Q ss_pred CCCCceeEEEEEeCceeeccccCC-CcceeEEEEEEcC--CCCcceEEEEEEEEE
Q 036193 98 GSGDRLVGRATLLVSDFIGGYVPE-NHLNFLSYLLRDA--RGIRSGILNVSVRVK 149 (198)
Q Consensus 98 ~~~d~~lG~~~vpl~~l~~~~~~~-~~~~~~~~~L~~~--~g~~~G~L~l~v~f~ 149 (198)
..+|++||++.+++.++..+...+ ......||+|.++ .++.+|+|+|++.|.
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 567999999999999998764322 2346689999975 467899999999984
No 9
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=5.9e-23 Score=155.42 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=100.1
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC----CceEEEEEEecccCCC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH----VTFITLEVQCRTCSGS 99 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~----~~~L~v~V~d~~~~~~ 99 (198)
.|.|+|++|++|...+..+.+||||++.+++ ++.||++.+++ .||+|||+|.|.+... ...|.|+|||++ ...
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~-~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKD-LNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR-RSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCC-CCCccceEEEEEccCHHHccCCeEEEEEeeCC-CCc
Confidence 4899999999999878788999999999986 58899998775 9999999999999742 358999999987 344
Q ss_pred -CCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC--CCcceEEEEEEEEE
Q 036193 100 -GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR--GIRSGILNVSVRVK 149 (198)
Q Consensus 100 -~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~--g~~~G~L~l~v~f~ 149 (198)
+|++||++.+++.++.... .....||+|.++. ++.+|+|+|+++|.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 7999999999999987322 2356799998753 47899999999985
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=6.4e-23 Score=154.61 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=100.3
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCCc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~ 102 (198)
.|.|+|++|+||... .+||||++.+++ .+.+|++.+++ .||+|||+|.|.+.. ....|.|+|||++ ..+|+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-~~~kT~v~~~t-~nP~Wne~F~f~~~~~~~~~L~~~v~d~d--~~~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN-YKGSTKAIERT-SNPEWNQVFAFSKDRLQGSTLEVSVWDKD--KAKDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC-ccccccccCCC-CCCccceEEEEEcCCCcCCEEEEEEEeCC--CCcCc
Confidence 389999999999865 689999999976 58899999875 999999999999975 5689999999998 44899
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCCC-CcceEEEEEEEEE
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG-IRSGILNVSVRVK 149 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g-~~~G~L~l~v~f~ 149 (198)
+||++.++++++..+...++.....||.|.+..+ +.+|+|+|+++|.
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999999987654333444568999988653 7899999999996
No 11
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.90 E-value=1e-22 Score=160.34 Aligned_cols=120 Identities=21% Similarity=0.298 Sum_probs=101.1
Q ss_pred CcEEEEEEEEccCCCCCC------------------------------CCCCCCcEEEEEECCCCeeEeeecCCCCCCCe
Q 036193 22 SRTVEITVLSAEDLRVDG------------------------------RSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPA 71 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~------------------------------~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~ 71 (198)
.|+|+|+|++|++|+.++ ..+.+||||+|++++....||++.+++ .||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~-~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENS-ENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCC-CCCc
Confidence 588999999999998765 346689999999987555799999876 9999
Q ss_pred eceEEEEEeCCCCceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCC---cceEEEEEEEE
Q 036193 72 WDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGI---RSGILNVSVRV 148 (198)
Q Consensus 72 WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~---~~G~L~l~v~f 148 (198)
|||+|.|.+......|.|+|+|++ ..++++||++.+|++++..+.. ...||+|.+.+++ ..|+|+|+++|
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d--~~~~~~IG~~~i~l~~l~~g~~-----~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDND--VVGAQLIGRAYIPVEDLLSGEP-----VEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCC--CcCCcEEEEEEEEhHHccCCCC-----cceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999999876778999999998 5578899999999999986532 4579999886553 46899999998
Q ss_pred E
Q 036193 149 K 149 (198)
Q Consensus 149 ~ 149 (198)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.89 E-value=3.2e-22 Score=151.27 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=101.4
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECC-CCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCce
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDP-FNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~-~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~ 103 (198)
|.|+|++|+||.. ..+.+||||+++++. .++.+|++.+++ .||+|||.|.|.+......|.|+|||++ ...+|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNT-SNPFWDEHFLFELSPNSKELLFEVYDNG-KKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecC-CCCccCceEEEEeCCCCCEEEEEEEECC-CCCCCce
Confidence 6799999999987 678999999999974 357899999876 9999999999999866688999999998 4567999
Q ss_pred eEEEEEeCceeeccccCCCcceeEEEEEEcC---CCCcceEEEEEEEEEecCC
Q 036193 104 VGRATLLVSDFIGGYVPENHLNFLSYLLRDA---RGIRSGILNVSVRVKEGSG 153 (198)
Q Consensus 104 lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~---~g~~~G~L~l~v~f~~~~~ 153 (198)
||++.+++.++..+.. ...||+|... +++.+|+|++.+.|.+...
T Consensus 77 lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 77 LGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 9999999999886532 3468998865 2467999999999987763
No 13
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.89 E-value=2.6e-22 Score=150.20 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=99.8
Q ss_pred cEEEEEEEEccCCCCCC-CCCCCCcEEEEEECC-CCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCC
Q 036193 23 RTVEITVLSAEDLRVDG-RSVKKKAFAVVKLDP-FNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSG 100 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~-~~~~~dpYv~v~l~~-~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~ 100 (198)
|.|+|+|++|++|+..+ ..+.+||||++++++ ....+|++.+++ .||+|||.|.|.+......|.|+|||++ ...+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~-~~P~Wne~~~~~v~~~~~~l~~~v~d~~-~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDT-SNPVWNETKYILVNSLTEPLNLTVYDFN-DKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCC-CCCcceEEEEEEeCCCCCEEEEEEEecC-CCCC
Confidence 68999999999998644 346789999999987 468899999875 9999999999999866789999999998 4567
Q ss_pred CceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEe
Q 036193 101 DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKE 150 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~ 150 (198)
|++||++.+++.++...... ...++.|. .+++.+|+|+++++|.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhh-cCCccceEEEEEEEeCC
Confidence 99999999999999876421 12244443 57888999999999975
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.89 E-value=6.2e-22 Score=149.22 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=98.6
Q ss_pred EEEEEEEccCCCCC-CCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCce
Q 036193 25 VEITVLSAEDLRVD-GRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 25 L~V~VisA~~L~~~-~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~ 103 (198)
|.|+|++|+||+.. ...+.+||||.|.+++....+|++.+++ .||+|||+|.|.+......|.|+|||++ ...+|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt-~~P~WnE~F~f~v~~~~~~l~~~v~d~~-~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKS-LCPFFGEDFYFEIPRTFRHLSFYIYDRD-VLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECC-CCCccCCeEEEEcCCCCCEEEEEEEECC-CCCCCce
Confidence 78999999999875 3456889999999976557899998875 9999999999999866689999999998 5668999
Q ss_pred eEEEEEeCceeeccccCCCcceeEEEEEEcC--CCCcceEEEEEEEE
Q 036193 104 VGRATLLVSDFIGGYVPENHLNFLSYLLRDA--RGIRSGILNVSVRV 148 (198)
Q Consensus 104 lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~--~g~~~G~L~l~v~f 148 (198)
||.+.++++++..+. ....||+|... .++.+|+|+|+++|
T Consensus 80 iG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999987543 24679999864 35678999999886
No 15
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.88 E-value=7.7e-22 Score=146.97 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=100.3
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
|.|+|+|++|++|+..+..+.+||||++.+++ .+.+|++.+++ .||.|||+|.|.+......|.|+|||++ ...+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~t-~nP~W~e~f~~~~~~~~~~l~~~v~d~~-~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYKT-LNPEWNKIFTFPIKDIHDVLEVTVYDED-KDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecCC-cCCccCcEEEEEecCcCCEEEEEEEECC-CCCCCc
Confidence 57999999999999888888999999999986 46799999875 9999999999999765689999999988 446799
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCC--CCcceEEEEEEEEE
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR--GIRSGILNVSVRVK 149 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~--g~~~G~L~l~v~f~ 149 (198)
+||++.+++.++..+ ...||+|.++. ++.+|+|.|++.|.
T Consensus 78 ~iG~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 78 FLGKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred eeeEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEeC
Confidence 999999999988644 23599998754 46799999999873
No 16
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.88 E-value=1e-21 Score=148.86 Aligned_cols=119 Identities=25% Similarity=0.341 Sum_probs=97.4
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSG 100 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~ 100 (198)
.+.|+|+|++|+||+.. +.+||||+|.+++.++.+|++. + +.||.|||+|.|.+... ...|+|+|||++ ...+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~-~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPPDVNSFTISLSNKA-KRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCCCcCEEEEEEEECC-CCCC
Confidence 46799999999999864 3689999999986556789874 4 49999999999997543 367899999988 5678
Q ss_pred CceeEEEEEeCceeeccccCCCcceeEEEEEEcCC---CCcceEEEEEEEEEec
Q 036193 101 DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR---GIRSGILNVSVRVKEG 151 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~---g~~~G~L~l~v~f~~~ 151 (198)
|++||++.+||.++..+.. ...||.|...+ .+..|+|+|+++|.+.
T Consensus 77 d~~iG~v~i~l~~l~~~~~-----~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQE-----TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCeEEEEEEEHhHccCCCc-----ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999999876532 45799998754 3567999999999874
No 17
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.88 E-value=1.1e-21 Score=148.51 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=101.1
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d 101 (198)
...|+|+|++|++|+..+.++.+||||++.+++ ++++|++.+++ .||+|||.|.|.+......|.|+|||++ ..+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~i~V~d~~--~~~d 77 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKDT-LSPEFDTQAIFYRKKPRSPIKIQVWNSN--LLCD 77 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCCC-CCCcccceEEEEecCCCCEEEEEEEECC--CCCC
Confidence 467999999999999888889999999999986 58899999875 9999999999999776789999999988 5579
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEc----CCCCcceEEEEEEEEEecC
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRD----ARGIRSGILNVSVRVKEGS 152 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~----~~g~~~G~L~l~v~f~~~~ 152 (198)
++||.+.+++.++... ...+|+|.. .+++..|+|.+++.+.+..
T Consensus 78 ~~lG~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 78 EFLGQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CceEEEEEecccCCCc-------CceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 9999999999875322 235677743 4578899999999887754
No 18
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.88 E-value=1.5e-21 Score=150.19 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=100.8
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCC
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSG 98 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~ 98 (198)
...|.|+|+|++|++|...+.++.+||||++.++. ++++|++.+++ .||.|||+|.|.+.. ....|.|+|||++ ..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~D~d-~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDT-LNPKWNSSMQFFVKDLEQDVLCITVFDRD-FF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCC-CCCccCceEEEEecCccCCEEEEEEEECC-CC
Confidence 45689999999999999888889999999999975 58899999875 999999999999964 4578999999998 45
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEE
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRV 148 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f 148 (198)
..|++||++.+++.++.............+.+| +++.+|+|+|++.|
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 679999999999999987432222223344444 46778999999987
No 19
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.87 E-value=6.7e-22 Score=154.99 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=87.9
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCC
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGS 99 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~ 99 (198)
+..|.|+|+|++|.||...|..+++||||++++++ ++.+|++.+++ .||+|||.|+|.+......|.++|||++ .+.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n-~NPeWNe~ltf~v~d~~~~lkv~VyD~D-~fs 79 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKN-LNPEWNEELTFTVKDPNTPLKVTVYDKD-TFS 79 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCC-CCCcccceEEEEecCCCceEEEEEEeCC-CCC
Confidence 45689999999999999999879999999999986 79999988775 9999999999999988899999999999 677
Q ss_pred CCceeEEEEEeCceeeccc
Q 036193 100 GDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 100 ~d~~lG~~~vpl~~l~~~~ 118 (198)
+|++||.|.|+|..++...
T Consensus 80 ~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 80 SDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred cccccceeeeccHHHHHHh
Confidence 8999999999999988653
No 20
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.87 E-value=3e-21 Score=145.19 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=98.2
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCcee
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLV 104 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~l 104 (198)
|.|+|++|++|...+..+.+||||++.+++....+|++.+++ .||+|||.|.|.+......|.|+|||++ ....|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t-~nP~Wne~f~~~~~~~~~~l~v~v~d~~-~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKT-LNPFWGEEYTVHLPPGFHTVSFYVLDED-TLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCC-CCCcccceEEEeeCCCCCEEEEEEEECC-CCCCCCEE
Confidence 899999999999888889999999999986545799999875 9999999999999876689999999998 45679999
Q ss_pred EEEEEeCceeeccccCCCcceeEEEEEEc--CCCCcceEEEEEEE
Q 036193 105 GRATLLVSDFIGGYVPENHLNFLSYLLRD--ARGIRSGILNVSVR 147 (198)
Q Consensus 105 G~~~vpl~~l~~~~~~~~~~~~~~~~L~~--~~g~~~G~L~l~v~ 147 (198)
|++.+++.++..... ....||+|.. ..++..|+|+|.++
T Consensus 80 G~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999988764321 1346999976 34567899999875
No 21
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.87 E-value=4.4e-21 Score=144.65 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=96.5
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCC--C
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSG--D 101 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~--d 101 (198)
.|+|+|++|++|...+.++.+||||++++++.+.++|++.+++ .||+|||+|.|.+.. ...|.|+|||++ .... |
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t-~nP~Wne~f~~~~~~-~~~l~i~V~d~~-~~~~~~d 77 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKT-LDPKWNEHFDLTVGP-SSIITIQVFDQK-KFKKKDQ 77 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCC-CCCcccceEEEEeCC-CCEEEEEEEECC-CCCCCCC
Confidence 3899999999999888889999999999986678899998875 999999999999976 689999999988 3433 5
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEcCC----CCcceEEEEEE
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR----GIRSGILNVSV 146 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~----g~~~G~L~l~v 146 (198)
++||++.+++.++...... ...||+|+... +...|+|.+.+
T Consensus 78 ~~lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 8999999999999865321 23589997743 56689988875
No 22
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.87 E-value=8.1e-21 Score=144.60 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=99.0
Q ss_pred CcCcEEEEEEEEccCCCCCCCC----------CCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRS----------VKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITL 89 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~----------~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v 89 (198)
|..+.|+|+|++|++|+..+.. +.+||||++.+++....+|++.+++ .||.|||+|.|.+.. ...|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t-~~P~Wne~f~~~v~~-~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKT-NSPVWNEEFTTEVHN-GRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCC-CCCCcceeEEEEcCC-CCEEEE
Confidence 4568999999999999876642 5789999999987555799988775 999999999999974 589999
Q ss_pred EEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEec
Q 036193 90 EVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEG 151 (198)
Q Consensus 90 ~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~ 151 (198)
+|+|++ ....|++||++.++|.++..+. ......||+|. ++|+|+|.+++...
T Consensus 79 ~v~d~~-~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~-----~~G~l~l~~~~~~~ 131 (132)
T cd04014 79 TVFHDA-AIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLE-----PQGKLHVKIELKGS 131 (132)
T ss_pred EEEeCC-CCCCCceEEEEEEEhHHhcccC---CCcccEEEEcc-----CCcEEEEEEEEecC
Confidence 999987 4567899999999999988741 11246799985 47999999998763
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.86 E-value=5.8e-21 Score=142.83 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=95.5
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECC--CCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCCC
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDP--FNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~--~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~d 101 (198)
|.|+|++|++|+..+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|.+... ...|.|+|||++ .. +|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t-~nP~Wne~f~f~i~~~~~~~l~v~v~d~d-~~-~~ 78 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS-INPVWNETFEFRIQSQVKNVLELTVMDED-YV-MD 78 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC-CCCccceEEEEEeCcccCCEEEEEEEECC-CC-CC
Confidence 789999999999887788999999999964 357899999875 9999999999999753 467999999998 34 89
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEE
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVK 149 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~ 149 (198)
++||++.+++.++..+. ....||+|.. +.+|+|++.+.+.
T Consensus 79 ~~iG~~~~~l~~l~~g~-----~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGE-----KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCC-----cEEEEEECCC---CCCceEEEEEEee
Confidence 99999999999987653 2567999864 3478988888764
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.86 E-value=7.6e-21 Score=141.24 Aligned_cols=114 Identities=19% Similarity=0.274 Sum_probs=97.0
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCCCc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~d~ 102 (198)
.|+|+|++|++|+..+..+.+||||++++++ ++.+|++.+++ .||+|||+|.|.+... ...|.|+|||++ ...+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~v~v~d~~-~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKT-LNPQWLEQFDLHLFDDQSQILEIEVWDKD-TGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCC-CCCceeEEEEEEecCCCCCEEEEEEEECC-CCCCCC
Confidence 3789999999999888788999999999975 58899998875 9999999999999754 689999999998 456799
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEE
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVK 149 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~ 149 (198)
+||++.++|+++..+. ....||+|.+. +|+|++.+.+.
T Consensus 78 ~iG~~~~~l~~l~~~~-----~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQ-----THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCC-----ceEEEEEccCC----CcEEEEEEEec
Confidence 9999999999887542 35679999753 59999988764
No 25
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.86 E-value=4.5e-21 Score=144.39 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=100.1
Q ss_pred cEEEEEEEEccCCCCCCC--CCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCC
Q 036193 23 RTVEITVLSAEDLRVDGR--SVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGS 99 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~--~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~ 99 (198)
|.|.|+|++|++|...+. .+.+||||++.+++ ++.+|++.+++ .||+|||+|.|.+.. ....|.|+|||++ ...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t-~~P~Wne~f~~~~~~~~~~~l~i~v~d~~-~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNT-LNPKWNYWCEFPIFSAQNQLLKLILWDKD-RFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecCC-cCCccCCcEEEEecCCCCCEEEEEEEECC-CCC
Confidence 579999999999998777 78999999999975 58899999875 999999999999985 5689999999988 455
Q ss_pred CCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC----CCcceEEEEEEEE
Q 036193 100 GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR----GIRSGILNVSVRV 148 (198)
Q Consensus 100 ~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~----g~~~G~L~l~v~f 148 (198)
+|++||++.+++.++.... .......||.|.+.+ +..+|+|+|.+.+
T Consensus 78 ~~~~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999987532 112245799998753 3479999999864
No 26
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.86 E-value=6.9e-21 Score=143.10 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=96.9
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCCCc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~d~ 102 (198)
.|+|+|++|++|...+..+.+||||++.+++ .+.+|++.+++ .||+|||+|.|.+... ...|.|+|||++ ....++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~~~v~d~~-~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKS-CYPRWNEVFEFELMEGADSPLSVEVWDWD-LVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCC-CCCccCcEEEEEcCCCCCCEEEEEEEECC-CCCCCc
Confidence 3899999999999888788899999999975 57899999875 9999999999999753 578999999988 456789
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEc------CCCCcceEEEEEEE
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRD------ARGIRSGILNVSVR 147 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~------~~g~~~G~L~l~v~ 147 (198)
+||.+.++|.++..... ...||.|.. .+++..|.|+|.|+
T Consensus 78 ~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999999999876432 245898886 24567899999874
No 27
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=6.8e-21 Score=143.69 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=83.9
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECC----C--CeeEeeecCCCCCCCeeceEEEEEeCCC----CceEEEEEEe
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----F--NNRVTKVDAIGGSYPAWDEKLVMKLPMH----VTFITLEVQC 93 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~--~k~rT~v~~~~g~nP~WNE~f~f~v~~~----~~~L~v~V~d 93 (198)
.|.|+|++|++|+..+ .|.+||||+|++.+ . ++++|++.+++ +||+|||+|.|.+..+ ...|.|+|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t-lnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCC-CCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 4899999999998776 48899999999832 2 35688888664 9999999999999732 3579999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcC
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA 134 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~ 134 (198)
++ ....|++||++.+|+.++..+. ....|++|..+
T Consensus 79 ~d-~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 79 YC-FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred ec-ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 98 4456899999999999998654 25679998764
No 28
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.85 E-value=3.4e-20 Score=140.19 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=98.7
Q ss_pred EEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEEecccCCCCCceeE
Q 036193 29 VLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQCRTCSGSGDRLVG 105 (198)
Q Consensus 29 VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~d~~~~~~~d~~lG 105 (198)
|++|++|.. ..+++||||++++++ .+++|++.+++ .||+|||+|.|.+.. ....|.|+|||++ ...+|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~-~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-VKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYE-KVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-EeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECC-CCCCCceEE
Confidence 789999987 678899999999986 47899999876 999999999999963 3689999999998 456789999
Q ss_pred EEEEeCceeeccccCCCcceeEEEEEEcCCCC-cceEEEEEEEEEecCCC
Q 036193 106 RATLLVSDFIGGYVPENHLNFLSYLLRDARGI-RSGILNVSVRVKEGSGL 154 (198)
Q Consensus 106 ~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~-~~G~L~l~v~f~~~~~~ 154 (198)
++.++++++..+. ....+++|.+.+++ .+|+|++.++|.+....
T Consensus 77 ~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 77 SATVSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 9999999998653 25679999877664 47999999999987754
No 29
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.84 E-value=3e-20 Score=138.46 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=95.3
Q ss_pred cEEEEEEEEccCCCCCCC------CCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecc
Q 036193 23 RTVEITVLSAEDLRVDGR------SVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRT 95 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~------~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~ 95 (198)
|.|+|+|++|++|...+. .+.+||||++.+++ +.++|++.+++ .||+|||.|.|.+.. ....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t-~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKEN-LNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCC-CCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 579999999999987653 36799999999986 68899998875 999999999999974 4689999999998
Q ss_pred cCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEE
Q 036193 96 CSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRV 148 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f 148 (198)
..+|++||.+.+++.++..+. ....||+|.+. .+|+|+|.++|
T Consensus 79 --~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 79 --PDKDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred --CCCCCcEEEEEEEHHHhcccC-----ccceEEECcCC---CCceEEEEEeC
Confidence 348999999999999988643 24579999653 57999998865
No 30
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.84 E-value=2.8e-20 Score=141.14 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=85.0
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
+.|.|+|++|++|...+ ..||||++++++ ++.+|++.++ .||+|||+|.|.+......|.|+|||++ ...|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V~dkd--~~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-VKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIELWNKG--LIWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-EEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEEEeCC--CcCCC
Confidence 47999999999997644 358999999975 6889998864 6999999999999766667999999998 67999
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
+||++.|||.++..+. +.....||+|..
T Consensus 74 ~lG~v~i~L~~v~~~~---~~~~~~Wy~L~~ 101 (127)
T cd08394 74 LVGTVWIPLSTIRQSN---EEGPGEWLTLDS 101 (127)
T ss_pred ceEEEEEEhHHcccCC---CCCCCccEecCh
Confidence 9999999999998763 334568999986
No 31
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.84 E-value=3.8e-20 Score=139.23 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=87.2
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC----CceEEEEEEecccCC
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH----VTFITLEVQCRTCSG 98 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~----~~~L~v~V~d~~~~~ 98 (198)
|.|+|+|++|++|+..+..+++||||++++++ +..+|++.++++.||+|||+|.|.+... ...|.|+|||++ ..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~-~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD-NF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc-cC
Confidence 57999999999999877788999999999975 4778888876569999999999999865 578999999998 45
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
.+|++||++.+++.++..+.. ...||.|..
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~-----~~~~~~l~p 108 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGV-----EPGTAELVP 108 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCC-----CcCceEeec
Confidence 679999999999999987542 234666654
No 32
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.84 E-value=2.9e-20 Score=140.27 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=86.2
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEe-C---CCCceEEEEEEe
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKL-P---MHVTFITLEVQC 93 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v-~---~~~~~L~v~V~d 93 (198)
.+.|.|+|++|+||...+ .+.+||||++++.+ ..+.+|++.+++ .||+|||+|.|.+ + .....|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~-~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCC-CCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 578999999999999888 78999999999964 247899999876 9999999999998 3 245799999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
++ ...++++||++.++|.++..+. ....||+|
T Consensus 90 ~d-~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 90 HD-SLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred CC-CCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 98 5667999999999999987543 13568876
No 33
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.84 E-value=1.3e-19 Score=138.66 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=97.7
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC----------CCceEEEEEEe
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM----------HVTFITLEVQC 93 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~----------~~~~L~v~V~d 93 (198)
.|+|+|++|++|...+..+.+||||+|.+++ ++.+|++.+++ .||+|||.|.|.+.. ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t-~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKET-LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCC-CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 5899999999999888889999999999975 58899999875 999999999998531 12579999999
Q ss_pred cccCCCCCceeEEEEE-eCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEec
Q 036193 94 RTCSGSGDRLVGRATL-LVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEG 151 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~v-pl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~ 151 (198)
++ ...+|++||++.+ |+..+.... .......||+|.. .++.+|+|.|++.+.+.
T Consensus 80 ~d-~~~~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~~-~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QD-SVGKDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIYK-GGQSAGELLAAFELIEV 134 (135)
T ss_pred Cc-CCCCCccceEEEeeeeeecccCC--CCCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence 98 4567899999987 544333221 2334668999974 46789999999999864
No 34
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.84 E-value=7.4e-20 Score=138.70 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=94.2
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccC------
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCS------ 97 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~------ 97 (198)
.|+|+|++|++|...+..+.+||||++.+++ .+.+|++.+++ .||+|||+|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t-~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQN-LNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCC-CCCccceEEEEEecCCCCEEEEEEEECCCCcccccc
Confidence 5899999999999888888999999999975 57899998875 999999999999975567899999998721
Q ss_pred ----CCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC--CcceEEEEEE
Q 036193 98 ----GSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG--IRSGILNVSV 146 (198)
Q Consensus 98 ----~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g--~~~G~L~l~v 146 (198)
...|++||.+.+++.++... ...||.|.+.++ +.+|+|.|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 13588999999999876422 347999987543 5799999874
No 35
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.83 E-value=4.6e-20 Score=135.26 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=87.0
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCCc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~ 102 (198)
.|.|+|++|++|+..+..+.+||||++++++ ++++|++.+++ .||+|||.|.|.+.. +...|.|+|+|++ . |+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--~--~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERT-NNPVWEEGFTFLVRNPENQELEIEVKDDK--T--GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCC-CCCcccceEEEEeCCCCCCEEEEEEEECC--C--CC
Confidence 3899999999999877788999999999987 68899998765 999999999999985 4678999999988 3 88
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
+||++.++|.++.... +.....||+|.+
T Consensus 75 ~iG~~~i~l~~l~~~~---~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKEP---DLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhccc---cceeeeeEecCC
Confidence 9999999999998653 223567999975
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=6.6e-20 Score=143.05 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=84.4
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeC------------C----C
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLP------------M----H 83 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~------------~----~ 83 (198)
.|.|+|++|+||.. ..+.+||||+|.+.+. ++.+|++.+++ .||+|||+|.|.+. + .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t-~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKT-NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCC-CCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999987 4678999999999763 46789998875 99999999999994 1 2
Q ss_pred CceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC
Q 036193 84 VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR 135 (198)
Q Consensus 84 ~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~ 135 (198)
...|.|+|||++ ...+|++||++.|++.++..+.. ....||+|...+
T Consensus 78 ~~~L~i~V~d~~-~~~~ddfLG~v~i~l~~l~~~~~----~~~~W~~L~~~~ 124 (148)
T cd04010 78 KLELRVDLWHAS-MGGGDVFLGEVRIPLRGLDLQAG----SHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEEcCC-CCCCCceeEEEEEecccccccCC----cCcceeecCCcc
Confidence 358999999998 45579999999999999876511 135699998753
No 37
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.83 E-value=3.1e-19 Score=135.06 Aligned_cols=120 Identities=24% Similarity=0.326 Sum_probs=95.9
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
..|+|+|++|+ |...+.++.+||||++++++..+.+|++.+++ .||+|||+|.|.+.. ...|.|+|||++ ....|+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t-~~P~Wne~f~~~~~~-~~~l~~~V~d~~-~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKT-SNPKWNEHFTVLVTP-QSTLEFKVWSHH-TLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCC-CCCccccEEEEEeCC-CCEEEEEEEeCC-CCCCCc
Confidence 36999999999 54444478899999999986547899998765 999999999999975 478999999998 456799
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCC---CCcceEEEEEE
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR---GIRSGILNVSV 146 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~---g~~~G~L~l~v 146 (198)
+||++.++|.++.............+++|.+++ ++..|.|++.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999999875422222234689998754 37789999875
No 38
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=1.2e-19 Score=141.16 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=88.9
Q ss_pred cCcEEEEEEEEccCCCCC-CCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEe-c
Q 036193 21 HSRTVEITVLSAEDLRVD-GRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQC-R 94 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~-~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d-~ 94 (198)
..+.|+|+|++|+||... +..+.+||||++++.+. .+.||++++++ .||+|||+|.|.+......|.|+||+ .
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt-lnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT-LDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC-CCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 358899999999999864 35678999999999542 37899999876 99999999999998777899999994 5
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR 135 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~ 135 (198)
+ ++.++++||++.|+|+++..+. ....||+|....
T Consensus 106 ~-~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 106 G-RMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred C-CCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 5 4567899999999999985442 145799998754
No 39
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.83 E-value=1.5e-19 Score=133.90 Aligned_cols=113 Identities=25% Similarity=0.284 Sum_probs=95.4
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCCce
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~~ 103 (198)
|+|+|++|++|...+..+.+||||++.+++....+|++.++ +.||+|||+|.|.+.. ....|.|+|||++ ...++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~-~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWD-RGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCC-CCCCCCc
Confidence 68999999999887778889999999998765689998876 4999999999999975 4578999999988 4567999
Q ss_pred eEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEE
Q 036193 104 VGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNV 144 (198)
Q Consensus 104 lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l 144 (198)
||++.+++.++..+. ....|++|...++...|+|-|
T Consensus 79 iG~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEE-----TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCC-----cEEEEEECcCCCCccCceEEc
Confidence 999999999987642 256799998777777888754
No 40
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=8.5e-20 Score=137.07 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=79.6
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC---CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEEe
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF---NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQC 93 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~---~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~d 93 (198)
+..+.|.|+|++|++|+. .+.+||||++++.+. .+.+|++.+++ +||+|||+|.|.++. ....|.|+|||
T Consensus 11 ~~~~~L~V~vikA~~L~~---~g~sDPYVKv~L~~~~k~~k~kT~v~rkt-lnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 11 KQKAELHVNILEAENISV---DAGCECYISGCVSVSEGQKEAQTALKKLA-LHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred CcCCEEEEEEEEecCCCC---CCCCCeEEEEEEcCCcCccEEEcceecCC-CCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 567899999999999982 356999999999642 47899999886 999999999999974 35789999999
Q ss_pred cccCCCCCceeEEEEEeCceeec
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIG 116 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~ 116 (198)
.+ +++++++||++.++++++..
T Consensus 87 ~D-rfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 87 CD-RFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred CC-CCCCCceEEEEEEccccccC
Confidence 99 78899999999999997643
No 41
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.82 E-value=4.4e-19 Score=136.71 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=95.2
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCC------------CeeEeeecCCCCCCCee-ceEEEEEeCCCCceEEEE
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF------------NNRVTKVDAIGGSYPAW-DEKLVMKLPMHVTFITLE 90 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~------------~k~rT~v~~~~g~nP~W-NE~f~f~v~~~~~~L~v~ 90 (198)
.+.|++++|+||+ .+.++++||||++.+.+. ++.+|++.+++ .||+| ||+|.|.+.. ...|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~t-lnP~W~nE~f~f~v~~-~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENT-INPVWHREQFVFVGLP-TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCC-CCCceEceEEEEEcCC-CCEEEEE
Confidence 4679999999998 567899999999999542 36899999876 99999 9999999975 4789999
Q ss_pred EEecccCCC---CCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC--CCcceEEEEEE
Q 036193 91 VQCRTCSGS---GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR--GIRSGILNVSV 146 (198)
Q Consensus 91 V~d~~~~~~---~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~--g~~~G~L~l~v 146 (198)
|||++ ... .|++||++.+++.++..+.. ......+|+|.+.+ +..+|+|.|.+
T Consensus 79 V~D~~-~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKF-AKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecC-CCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99976 122 27899999999999987742 22366799998754 57899999875
No 42
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.82 E-value=1.9e-19 Score=137.14 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=88.0
Q ss_pred CcCcEEEEEEEEccCCCCCCCC-CCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRS-VKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~-~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V 91 (198)
...+.|.|+|++|+||...+.. +.+||||++.+.+. .+.||++.+++ .||+|||+|.|.+... ...|.|.|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t-~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGT-VNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCC-CCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 4467899999999999877754 88999999999643 37799999875 9999999999999742 57999999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
||.+ ...++++||++.|+|+++.-... ......||+|
T Consensus 91 ~~~~-~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l 127 (128)
T cd08392 91 WHSR-TLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPL 127 (128)
T ss_pred EeCC-CCcCcceEEEEEEEcCCcccCCC--CccccceEEC
Confidence 9988 46678999999999998854421 2235679987
No 43
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.82 E-value=4.9e-19 Score=133.30 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=96.5
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCC--CeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF--NNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSG 100 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~--~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~ 100 (198)
.|.|+|++|++|+..+..+.+||||++.+.+. ...+|++.+++ .||+|||+|.|.+... ...|.|+|||++ ....
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d-~~~~ 79 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRS-FVGK 79 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECC-CCCC
Confidence 58999999999998888889999999998643 35799998875 9999999999999763 578999999998 4457
Q ss_pred CceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEec
Q 036193 101 DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEG 151 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~ 151 (198)
+++||++.++|.++.... +......|+.|.. +|+|+|.+.+...
T Consensus 80 ~~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~-----~g~i~l~~~~~~~ 123 (126)
T cd04043 80 HDLCGRASLKLDPKRFGD--DGLPREIWLDLDT-----QGRLLLRVSMEGE 123 (126)
T ss_pred CceEEEEEEecCHHHcCC--CCCCceEEEEcCC-----CCeEEEEEEEeee
Confidence 899999999998765432 1223567998853 6899999888754
No 44
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=2e-19 Score=135.37 Aligned_cols=105 Identities=24% Similarity=0.214 Sum_probs=90.4
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
|.|+|+|++|++|+..+.++.+||||++++++..+.+|++.+++ .||+|||.|.|.+......|.|+|||++ ...+|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t-~~P~Wne~f~~~v~~~~~~L~v~v~d~~-~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNT-LNPVWDEVLYVPVTSPNQKITLEVMDYE-KVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCC-cCCccCceEEEEecCCCCEEEEEEEECC-CCCCCC
Confidence 57999999999999888889999999999976557889888764 9999999999999876689999999998 456789
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCC
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR 135 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~ 135 (198)
+||++.+++.++..+. ...||.|.+.+
T Consensus 79 ~IG~~~~~l~~l~~~~------~~~~~~~~~~~ 105 (120)
T cd04045 79 SLGSVEINVSDLIKKN------EDGKYVEYDDE 105 (120)
T ss_pred eeeEEEEeHHHhhCCC------CCceEEecCCC
Confidence 9999999999998762 24588888754
No 45
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.82 E-value=1.2e-19 Score=134.33 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=80.5
Q ss_pred cEEEEEEEEccCCCCCCCC-CCCCcEEEEEECC--CCeeEeeecCCCCCCCeeceEEEEEeCCC----CceEEEEEEecc
Q 036193 23 RTVEITVLSAEDLRVDGRS-VKKKAFAVVKLDP--FNNRVTKVDAIGGSYPAWDEKLVMKLPMH----VTFITLEVQCRT 95 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~-~~~dpYv~v~l~~--~~k~rT~v~~~~g~nP~WNE~f~f~v~~~----~~~L~v~V~d~~ 95 (198)
|.|+|+|++|++|...+.. +.+||||+|++.+ ....+|++.+++ .||+|||+|.|.+... ...|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD-LNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC-CCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999988877 8999999999954 346799999886 9999999999988642 468999999998
Q ss_pred cCCCCCceeEEEEEeCceeecc
Q 036193 96 CSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
....|++||++.+++.++...
T Consensus 80 -~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 80 -RFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred -CCCCCCcceEEEEEHHHHhcC
Confidence 566799999999999999843
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=3.4e-19 Score=134.96 Aligned_cols=106 Identities=12% Similarity=0.175 Sum_probs=86.7
Q ss_pred CcCcEEEEEEEEccCCCCCCC-CCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGR-SVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~-~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V 91 (198)
...+.|.|+|++|+||...+. .+.+||||++.+.+ ..+.||++.+++ .||+|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNT-TNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCC-CCCcccceEEEECCHHHhCCCEEEEEE
Confidence 456889999999999987654 47899999999954 236789988775 999999999999974 356899999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
||++ ...++++||++.++|.++..... ...||+|.
T Consensus 91 ~d~~-~~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l~ 125 (125)
T cd04029 91 WHYD-RFGRNTFLGEVEIPLDSWNFDSQ-----HEECLPLH 125 (125)
T ss_pred EECC-CCCCCcEEEEEEEeCCcccccCC-----cccEEECc
Confidence 9998 56679999999999998876532 34688873
No 47
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.81 E-value=4e-19 Score=131.43 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=86.8
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-----CceEEEEEEeccc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-----VTFITLEVQCRTC 96 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~v~V~d~~~ 96 (198)
-..|+|+|++|++|. .+.+||||++++++ ++.+|++.+++ .||+|||+|.|.+... ...|.|+|||++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~- 75 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG-QKKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYDSR- 75 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC-EeeeeeEEecc-CCCccccEEEEecCCCHHHHhcCeEEEEEEcCc-
Confidence 357999999999998 46799999999996 57899988765 9999999999998532 468999999998
Q ss_pred CCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcC
Q 036193 97 SGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA 134 (198)
Q Consensus 97 ~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~ 134 (198)
...+|++||++.++|+++..+. +......||+|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 4567999999999999998653 33467789999763
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.81 E-value=1.8e-19 Score=133.36 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred cEEEEEEEEccCCCCCCCC----CCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC--CceEEEEEEeccc
Q 036193 23 RTVEITVLSAEDLRVDGRS----VKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH--VTFITLEVQCRTC 96 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~----~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~--~~~L~v~V~d~~~ 96 (198)
|.|.|+|++|++|+..+.. +.+||||++++++ +++||++++++ .||+|||.|.|.+... ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t-~nPvWne~f~f~v~~~~~~~~L~~~V~D~d- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHT-LNPVFNERLAFEVYPHEKNFDIQFKVLDKD- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCC-CCCcccceEEEEEeCccCCCEEEEEEEECC-
Confidence 5799999999999875432 3589999999975 58899999886 9999999999998642 358999999998
Q ss_pred CCCCCceeEEEEEeCceeeccc
Q 036193 97 SGSGDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 97 ~~~~d~~lG~~~vpl~~l~~~~ 118 (198)
...+|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 5678999999999999999775
No 49
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.81 E-value=3.1e-19 Score=134.25 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=89.1
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEEC--CCCeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEec
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLD--PFNNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCR 94 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~--~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~ 94 (198)
+..+.|.|+|++|+||...+..+.+||||++.+. +..+.+|++.+++ .||+|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT-LNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC-CCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 3467899999999999988888899999999994 3457899999876 9999999999999743 46899999999
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
+ ...+|++||++.++|+++..+. ....||.|.
T Consensus 92 ~-~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 92 D-QFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred C-CCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 8 4567999999999999997553 245698875
No 50
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=2.8e-19 Score=135.31 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=86.7
Q ss_pred CcCcEEEEEEEEccCCCCCCCC-CCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRS-VKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~-~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V 91 (198)
...+.|.|+|++|+||...+.. +.+||||++.+.+ ..+.||++++++ .||+|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT-LNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC-CCCccCceEEEECCHHHhCCCEEEEEE
Confidence 3457899999999999987765 7899999999953 235799999886 999999999999973 357999999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
||.+ ...++++||++.++|.++.... ....||+|
T Consensus 91 ~d~~-~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L 124 (125)
T cd08393 91 WHRD-SLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPL 124 (125)
T ss_pred EeCC-CCCCCcEeEEEEEecCccccCC-----CCcceEEC
Confidence 9998 5668999999999999886442 23568876
No 51
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.81 E-value=2.1e-19 Score=132.94 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=86.9
Q ss_pred EEEEEEEccCCCCCCC-CCCCCcEEEEEECCCCeeEeeecCCCCCCCee-ceEEEEEeCCC---CceEEEEEEecccCCC
Q 036193 25 VEITVLSAEDLRVDGR-SVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAW-DEKLVMKLPMH---VTFITLEVQCRTCSGS 99 (198)
Q Consensus 25 L~V~VisA~~L~~~~~-~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~W-NE~f~f~v~~~---~~~L~v~V~d~~~~~~ 99 (198)
|+|+|++|++|+..+. .+.+||||++++++ ++.||++.+++ .||+| ||+|.|.+... ...|.|+|||++ ...
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~-~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKS-LNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-TYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCC-CCCcccCcEEEEEcChHHcCCCeEEEEEEeCC-CCC
Confidence 6899999999987764 67899999999986 68999999875 99999 99999999753 478999999998 456
Q ss_pred CCceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 100 GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 100 ~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
+|++||++.+++.++.... +......||+|.+
T Consensus 78 ~~~~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred CCCceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 7899999999999998742 1223557999875
No 52
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=1.1e-18 Score=135.72 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=98.8
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCC---
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSG--- 98 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~--- 98 (198)
...|.|.|++|++|... .+|||++.+++....||++..++ .||.|||.|.|...+....|.|.|+.++...
T Consensus 10 ~~sL~v~V~EAk~Lp~~-----~~~Y~~i~Ld~~~vaRT~v~~~~-~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK-----KRYYCELCLDKTLYARTTSKLKT-DTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEccCCCCc-----CCceEEEEECCEEEEEEEEEcCC-CCCcceeeEEecCCCcccEEEEEEEEccCccccc
Confidence 46799999999999753 38999999998655799999876 8999999999998776688999997554112
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc----------ceEEEEEEEEEecCCC
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR----------SGILNVSVRVKEGSGL 154 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~----------~G~L~l~v~f~~~~~~ 154 (198)
.++.+||.+.||+.++..+.. ...||+|...++++ .+.|+++++|.+....
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~-----ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQF-----VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCc-----ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence 268899999999999986532 56799999976543 3699999999987643
No 53
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.80 E-value=7.6e-19 Score=132.01 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=88.0
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC--CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEEec
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF--NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQCR 94 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~--~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~d~ 94 (198)
...+.|+|+|++|+||...+..+.+||||++.+.+. .+++|++.+++ .||+|||+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCC-CCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 456789999999999998887888999999999642 46799998875 999999999999974 246899999999
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
+ .+.+|++||++.++|+++..+. ....||+|.
T Consensus 92 d-~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 92 D-RFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred C-CCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 8 4667899999999999886543 245688874
No 54
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.80 E-value=1.6e-18 Score=136.08 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=97.7
Q ss_pred EEEEEEEEccC--CCCCCCCCCCCcEEEEEE----CCCCeeEeeecCCCCCCCeeceEEEEEeCCC---------CceEE
Q 036193 24 TVEITVLSAED--LRVDGRSVKKKAFAVVKL----DPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH---------VTFIT 88 (198)
Q Consensus 24 ~L~V~VisA~~--L~~~~~~~~~dpYv~v~l----~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---------~~~L~ 88 (198)
.++++|..|++ |...+..+..||||++++ ++.++.||++.+++ .||+|||+|.|.+... ...|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~T-lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDT-NSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCC-CCCcccceEEEEeccccchhhhhccCCcEE
Confidence 35677777777 556666778999999998 34468999999886 9999999999999643 35799
Q ss_pred EEEEecccCCC-CCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecCC
Q 036193 89 LEVQCRTCSGS-GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGSG 153 (198)
Q Consensus 89 v~V~d~~~~~~-~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~~ 153 (198)
|+|||.+ .++ +|++||++.++|..+..... ...+++|.+......|+|++.+++-.+..
T Consensus 82 ~~V~d~~-~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 82 FEVYHKG-GFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMDGRKATGGKLEVKVRLREPLT 141 (155)
T ss_pred EEEEeCC-CcccCCCeeEEEEEEcccccccCc-----ceEEEEhhhCCCCcCCEEEEEEEecCCCc
Confidence 9999998 343 69999999999999876532 34589988644456789999999987764
No 55
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=3.6e-19 Score=133.85 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=83.5
Q ss_pred cCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC--CceEEEEEEec
Q 036193 21 HSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH--VTFITLEVQCR 94 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~--~~~L~v~V~d~ 94 (198)
..+.|+|+|++|+||...+ .+.+||||++.+.+. .+.||++.+++ .||+|||+|.|.+... ...|.|+|||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t-~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDS-ANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCC-CCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 3578999999999998777 788999999999652 36689988875 9999999999999743 35788999998
Q ss_pred ccCCC-CCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 95 TCSGS-GDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 95 ~~~~~-~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
+ ... ++++||.+.|+|.++..+.. ...||.|
T Consensus 88 ~-~~~~~~~~lG~~~i~l~~~~~~~~-----~~~Wy~l 119 (119)
T cd08685 88 L-SKSRDSGLLGCMSFGVKSIVNQKE-----ISGWYYL 119 (119)
T ss_pred C-CCcCCCEEEEEEEecHHHhccCcc-----ccceEeC
Confidence 7 343 47899999999999985421 3468865
No 56
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=7.6e-19 Score=131.82 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=85.6
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC----CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM----HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~----~~~~L~v~V 91 (198)
+..+.|.|+|++|++|...+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|.+.. ....|.|+|
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT-LNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC-CCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 45678999999999999877788899999999965 247789998876 999999999999643 357899999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
||++ ...+|++||++.++|.+..... ...||+|.
T Consensus 92 ~d~~-~~~~~~~iG~~~i~l~~~~~~~------~~~W~~L~ 125 (125)
T cd04031 92 WDYD-RDGENDFLGEVVIDLADALLDD------EPHWYPLQ 125 (125)
T ss_pred EeCC-CCCCCcEeeEEEEecccccccC------CcceEECc
Confidence 9998 4567899999999999833221 24688873
No 57
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.80 E-value=2.3e-18 Score=129.43 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=95.2
Q ss_pred cEEEEEEEEccCCCCCC--CCCCCCcEEEEEECC-----CCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEec
Q 036193 23 RTVEITVLSAEDLRVDG--RSVKKKAFAVVKLDP-----FNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCR 94 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~--~~~~~dpYv~v~l~~-----~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~ 94 (198)
..|+|+|++|++|+..+ ..+..||||++++.+ ..+.+|++.++++.||+|||+|.|.+... ...|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46999999999998766 577899999999943 24689999877656999999999998743 46899999999
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCC--cceEEEEEEEE
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGI--RSGILNVSVRV 148 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~--~~G~L~l~v~f 148 (198)
+ .. +|++||++.+++.++..+ ..+++|.+++|+ ..|.|.+.+++
T Consensus 82 ~-~~-~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D-SG-DDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-CC-CCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 34 899999999999988543 247899988774 46888888876
No 58
>PLN03008 Phospholipase D delta
Probab=99.80 E-value=1.6e-18 Score=163.59 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=104.9
Q ss_pred CcEEEEEEEEccCCCCCCC------------------------------------------CCCCCcEEEEEECCCCeeE
Q 036193 22 SRTVEITVLSAEDLRVDGR------------------------------------------SVKKKAFAVVKLDPFNNRV 59 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~------------------------------------------~~~~dpYv~v~l~~~~k~r 59 (198)
.|+|+++|..|++|+.++. .+++||||+|.+++..+.|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5889999999999864111 2467999999997655679
Q ss_pred eeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCC--
Q 036193 60 TKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGI-- 137 (198)
Q Consensus 60 T~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~-- 137 (198)
|++.+++ .||+|||+|.|.++.....|.|+|+|++ ..++++||++.|||.++..+.. ...|++|.+.+++
T Consensus 93 TrVi~n~-~NPvWNE~F~f~vah~~s~L~f~VkD~D--~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 93 TRVLKNS-QEPLWDEKFNISIAHPFAYLEFQVKDDD--VFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPP 164 (868)
T ss_pred EEeCCCC-CCCCcceeEEEEecCCCceEEEEEEcCC--ccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCC
Confidence 9999875 8999999999999877789999999998 5678899999999999987642 5679999997764
Q ss_pred -cceEEEEEEEEEecCCC
Q 036193 138 -RSGILNVSVRVKEGSGL 154 (198)
Q Consensus 138 -~~G~L~l~v~f~~~~~~ 154 (198)
..++|+|+++|.+....
T Consensus 165 k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCCcEEEEEEEEEEcccc
Confidence 45799999999998765
No 59
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.79 E-value=1.9e-18 Score=130.14 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=87.3
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~ 92 (198)
...+.|+|+|++|+||...+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|.+.. ....|.|+|+
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~-~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN-LNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCC-CCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 44678999999999999888888999999999954 357899999876 999999999999964 2478999999
Q ss_pred ecccCC--CCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 93 CRTCSG--SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 93 d~~~~~--~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
|++ .. .+|++||++.++|.++..+. ....||.|
T Consensus 92 ~~~-~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L 126 (127)
T cd04030 92 NSK-SFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDL 126 (127)
T ss_pred ECC-cccCCCCceEEEEEEecccccccC-----CccceEEC
Confidence 987 33 47899999999999986542 24568877
No 60
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.79 E-value=1.7e-18 Score=128.38 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=84.1
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCCCC
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~~d 101 (198)
|+|+|++|+||+.. +.+||||++++++...++|++.++ .||+|||+|.|.+... ...|.|.++|.+ ....+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~-~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR-SKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecc-cCCCe
Confidence 88999999999865 689999999998754579998865 8999999999999763 357778888876 23345
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEcCC--CCcceEEEEEEEE
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR--GIRSGILNVSVRV 148 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~--g~~~G~L~l~v~f 148 (198)
.++|. +++..+..+. ....||+|...+ ++..|+|+|.++|
T Consensus 76 ~~~g~--v~l~~~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQ-----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCC-----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 55555 4555444332 245799998754 3568999999986
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=1.1e-18 Score=132.36 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=86.9
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC-----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF-----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~-----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V 91 (198)
+..+.|.|+|++|+||+..+..+.+||||++.+-+. .+.+|++.+++ .||+|||+|.|+++. ....|.|+|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t-~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ-DKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC-CCCccccEEEEECCHHHhhcCEEEEEE
Confidence 556789999999999988777778999999999542 37899999875 999999999999975 357999999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
|+.+ ...++++||.+.|+|.++..... ....||.|
T Consensus 90 ~~~~-~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 90 CSVG-PDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred EeCC-CCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 9988 56689999999999998854321 23457764
No 62
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=2.4e-18 Score=129.39 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=87.2
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEEC--CCCeeEeeecCCCCCCCeeceEEEEEeCC----CCceEEEEEEe
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLD--PFNNRVTKVDAIGGSYPAWDEKLVMKLPM----HVTFITLEVQC 93 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~--~~~k~rT~v~~~~g~nP~WNE~f~f~v~~----~~~~L~v~V~d 93 (198)
...+.|.|+|++|+||+..+..+.+||||++.+. +.++.+|++.+++ .||+|||+|.|.+.+ ....|.|+|||
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC-CCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 4467899999999999988888899999999994 3457899999876 999999999998532 24689999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
++ ...++++||++.+++.++..+. ....||.|.
T Consensus 92 ~d-~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 92 YD-RFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CC-CCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 98 4667899999999999987543 245688774
No 63
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.79 E-value=2.2e-18 Score=128.99 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=85.9
Q ss_pred CcCcEEEEEEEEccCCCCCC-CCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDG-RSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~-~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V 91 (198)
...+.|+|+|++|+||+..+ ..+.+||||++.+.+. .+.+|++.+++ .||+|||+|.|.+.. ....|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNT-TNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCC-CCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 34678999999999998777 6788999999998532 46789988765 999999999999874 256899999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
||.+ ...++++||++.++|+++..+.. ...||+|
T Consensus 90 ~d~~-~~~~~~~iG~~~i~l~~l~~~~~-----~~~w~~l 123 (123)
T cd08521 90 WHHD-RFGRNTFLGEVEIPLDSWDLDSQ-----QSEWYPL 123 (123)
T ss_pred EeCC-CCcCCceeeEEEEecccccccCC-----CccEEEC
Confidence 9988 45678999999999999964421 3568876
No 64
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=4.4e-18 Score=129.37 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=84.8
Q ss_pred CcCcEEEEEEEEccCCCCCCCC-CCCCcEEEEEECC--CCeeEeeecCCCCCCCeeceEEEE-EeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRS-VKKKAFAVVKLDP--FNNRVTKVDAIGGSYPAWDEKLVM-KLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~-~~~dpYv~v~l~~--~~k~rT~v~~~~g~nP~WNE~f~f-~v~~---~~~~L~v~V~ 92 (198)
.....|.|+|++|+||+..+.. +.+||||++.+.+ .++.||++.+++ .||+|||+|.| .++. ....|.|+||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t-~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT-RNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC-CCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 4467899999999999987765 8899999999953 346799999875 99999999999 4542 2457999999
Q ss_pred ecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
|++ ...+|++||++.++|+++...+. . ....|++|
T Consensus 92 d~d-~~~~d~~lG~~~i~L~~l~~~~~--~-~~~~~~~~ 126 (128)
T cd08388 92 SFD-RYSRDDVIGEVVCPLAGADLLNE--G-ELLVSREI 126 (128)
T ss_pred EcC-CCCCCceeEEEEEeccccCCCCC--c-eEEEEEec
Confidence 988 56689999999999998865431 1 13456655
No 65
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.78 E-value=2.7e-18 Score=130.73 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=77.7
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC--CCCceEEEEEEecccCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP--MHVTFITLEVQCRTCSGS 99 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~--~~~~~L~v~V~d~~~~~~ 99 (198)
.+.|+|+|++|++|.. +..+.+||||+|.+++ ++.+|++.+++ .||+|||+|.|.+. .....|.|+|||++ ...
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~t-~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d-~~s 102 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWNN-NNPRWNATFDFGSVELSPGGKLRFEVWDRD-NGW 102 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecCC-CCCcCCCEEEEecccCCCCCEEEEEEEeCC-CCC
Confidence 4889999999999984 5678899999999986 48899999876 99999999999753 24689999999998 456
Q ss_pred CCceeEEEEEeCceee
Q 036193 100 GDRLVGRATLLVSDFI 115 (198)
Q Consensus 100 ~d~~lG~~~vpl~~l~ 115 (198)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 8999999999998555
No 66
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.78 E-value=2.1e-18 Score=134.10 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=82.2
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
|.|.|+|++|++|...+. +.+||||++++++ ++.+|++.+++ .||+|||+|.|.+......|.|+|||++ .+.+|+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-~~~kT~vvk~t-~nP~WnE~f~f~i~~~~~~l~~~V~D~d-~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-QKVKTRVIKKN-LNPVWNEELTLSVPNPMAPLKLEVFDKD-TFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-EEEEeeeEcCC-CCCeecccEEEEecCCCCEEEEEEEECC-CCCCCC
Confidence 679999999999987776 7899999999975 68999999875 9999999999999876789999999998 566799
Q ss_pred eeEEEEEeCceeeccc
Q 036193 103 LVGRATLLVSDFIGGY 118 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~ 118 (198)
+||++.+++.++....
T Consensus 78 ~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 78 SMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEEHHHhhhhh
Confidence 9999999999987653
No 67
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=4.5e-18 Score=128.61 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC--CCeeEeeecCCCCCCCeeceEEEEE-eCC---CCceEEEEEEe
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP--FNNRVTKVDAIGGSYPAWDEKLVMK-LPM---HVTFITLEVQC 93 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~--~~k~rT~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~v~V~d 93 (198)
...+.|.|+|++|+||...+..+..||||++.+.+ .++.+|++.+ + .||+|||+|.|+ ++. ....|.|+|||
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 45678999999999999877778899999988744 3577888875 4 899999999998 653 35789999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
.+ .+.++++||++.|+|+++..+. ....||+|.
T Consensus 91 ~~-~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 91 VE-RMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred CC-CcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 98 5667999999999999996542 256788874
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.1e-18 Score=133.36 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=86.1
Q ss_pred EEEEEEEEccCCCCCCCC--------------CCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC--CCCceE
Q 036193 24 TVEITVLSAEDLRVDGRS--------------VKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP--MHVTFI 87 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~--------------~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~--~~~~~L 87 (198)
.|.|+|++|++|+..+.. +.+||||+|.+++ ++.+|++.+++ .||+|||+|.|++. .....|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~t-~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKNS-YNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcCC-CCCCcceEEEEEeeCCCcCCEE
Confidence 489999999999976643 3689999999987 47899999876 99999999999974 235799
Q ss_pred EEEEEecccCCCCCceeEEEEEeCceeeccccCCC---cceeEEEEEEcC
Q 036193 88 TLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPEN---HLNFLSYLLRDA 134 (198)
Q Consensus 88 ~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~---~~~~~~~~L~~~ 134 (198)
.|+|||++ ...+|++||++.+++.++..... +. .....||.|...
T Consensus 79 ~~~v~D~d-~~~~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWD-RVGNDDVIGTHFIDLSKISNSGD-EGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECC-CCCCCCEEEEEEEeHHHhccCCc-cccCCccCceEEEeecC
Confidence 99999998 45689999999999999876542 11 124578888753
No 69
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.77 E-value=1.3e-17 Score=124.85 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=86.7
Q ss_pred CcCcEEEEEEEEccCCCCCC-CCCCCCcEEEEEECC--CCeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEe
Q 036193 20 SHSRTVEITVLSAEDLRVDG-RSVKKKAFAVVKLDP--FNNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQC 93 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~-~~~~~dpYv~v~l~~--~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d 93 (198)
...+.|.|+|++|++|+..+ ..+.+||||++.+.+ ....+|++.+++ .||+|||+|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~-~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT-QNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCC-CCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 34678999999999998877 578899999999843 346789888875 9999999999999742 4689999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
.+ ...++++||++.++|.++..... ...|++|.
T Consensus 90 ~~-~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~ 122 (123)
T cd08390 90 VD-RFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLE 122 (123)
T ss_pred CC-cCCCCcEEEEEEEeccceecCCC-----ceEEEeCC
Confidence 88 45578999999999999886531 34688874
No 70
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=4.6e-18 Score=125.95 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCCCceeEEEEEeCceeecc
Q 036193 39 GRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 39 ~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
.++|.+||||++.+++....+|++.+++ .||+|||+|.|.+... ...|.|+|+|++ .. +|++||++.++|+++...
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~i~v~d~~-~~-~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKT-NNPSWNASTEFLVTDRRKSRVTVVVKDDR-DR-HDPVLGSVSISLNDLIDA 84 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccC-CCCccCCceEEEecCcCCCEEEEEEEECC-CC-CCCeEEEEEecHHHHHhh
Confidence 4578899999999986546799988775 9999999999999753 578999999998 34 899999999999998754
Q ss_pred ccCCCcceeEEEEEEcCCCCcceEEEEEEEEEec
Q 036193 118 YVPENHLNFLSYLLRDARGIRSGILNVSVRVKEG 151 (198)
Q Consensus 118 ~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~ 151 (198)
.. ....||+|.. +.+|+|++++.|.|.
T Consensus 85 ~~----~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TS----VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred hh----ccceeEECCC---CCCCEEEEEEEEecC
Confidence 21 1346999864 568999999999873
No 71
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=5.3e-18 Score=129.46 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=81.9
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC------CCeeEeeecCCCCCCCeeceEEEEEeCC-----CCceEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP------FNNRVTKVDAIGGSYPAWDEKLVMKLPM-----HVTFIT 88 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~------~~k~rT~v~~~~g~nP~WNE~f~f~v~~-----~~~~L~ 88 (198)
...+.|+|+|++|++|+..+..+.+||||+|.+.+ ..+.+|++.+++ .||+|||+|.|.+.. ....|.
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCCCEEE
Confidence 34578999999999999877788999999999963 247899999876 999999999999964 246899
Q ss_pred EEEEecccCCCCCceeEEEEEeCceeecc
Q 036193 89 LEVQCRTCSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 89 v~V~d~~~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
|+|||++ ...+|++||++.++|+++..-
T Consensus 92 ~~V~d~d-~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYD-LLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecC-CCCCCcEeEEEEEeHHHCCcc
Confidence 9999998 456699999999999988843
No 72
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.74 E-value=1.5e-17 Score=131.48 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=86.5
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeC-C---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLP-M---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~-~---~~~~L~v~V 91 (198)
...+.|.|+|++|+||+..+..+.+||||++.+.+ ..++||++++++ .||+|||+|.|.+. . ....|.|+|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 45789999999999999888788999999999842 357899999886 99999999999863 2 236899999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
||++ .+.+|++||++.+++.++..... ...||.|..
T Consensus 103 ~d~d-~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 103 WDHD-KLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EeCC-CCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9998 45679999999999998875431 234666543
No 73
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=1.7e-17 Score=127.59 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=86.0
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECC---CCeeEeeecCCCCCCCeeceEEEEEeCCC----------------Cc
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDP---FNNRVTKVDAIGGSYPAWDEKLVMKLPMH----------------VT 85 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~---~~k~rT~v~~~~g~nP~WNE~f~f~v~~~----------------~~ 85 (198)
|+|+|++|++|... ..+.+||||++.++. ..+.+|++++++ .||+|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t-~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKT-NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCC-CCCCcceEEEEEcccccccccccccccccccccc
Confidence 67999999999877 678999999999984 467899999875 9999999999998642 46
Q ss_pred eEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC
Q 036193 86 FITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR 135 (198)
Q Consensus 86 ~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~ 135 (198)
.|.|+|||++ ...++++||++.+++.++..... ...||+|...+
T Consensus 79 ~l~i~V~d~~-~~~~~~~IG~~~i~l~~l~~~~~-----~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHAS-MVSGDDFLGEVRIPLQGLQQAGS-----HQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCC-cCcCCcEEEEEEEehhhccCCCc-----ccceEecCCcC
Confidence 8999999998 44579999999999999875431 45699998753
No 74
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.74 E-value=2.1e-17 Score=127.19 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=78.2
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~ 92 (198)
+....|.|+|++|+||...+..+.+||||++.+.+. .+.+|++.+++ .||+|||+|.|.++. ....|.|+||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t-~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDD-TNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCC-CCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 456789999999999998887889999999999542 25688888876 999999999999974 3578999999
Q ss_pred ecccCCCCCceeEEEEEeCce
Q 036193 93 CRTCSGSGDRLVGRATLLVSD 113 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~ 113 (198)
|.+ ...++++||++.+....
T Consensus 91 ~~d-~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 91 EST-EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred eCC-CCCCCCeeEEEEECCCC
Confidence 998 56789999999997763
No 75
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.74 E-value=2.1e-17 Score=129.56 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=84.8
Q ss_pred CCCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----------------------------CeeEeeecCCCCCC
Q 036193 18 CSSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----------------------------NNRVTKVDAIGGSY 69 (198)
Q Consensus 18 ~s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----------------------------~k~rT~v~~~~g~n 69 (198)
..+..+.|.|+|++|++|...+..+.+||||+|.+.+. ...+|++.+++ .|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-ln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT-LN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC-CC
Confidence 44778999999999999998888899999999999632 23688888775 99
Q ss_pred CeeceEEEEEeCC-CCceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 70 PAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 70 P~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
|+|||+|.|.+.. ....|.|+|||++ |++||++.++++++.... ...||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~~------~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSCG------LDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCCCC------CCCeEeC
Confidence 9999999999974 3579999999865 889999999999998321 2458875
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.74 E-value=2.6e-17 Score=124.85 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=88.7
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCCC--CceEEEEEEecc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPMH--VTFITLEVQCRT 95 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~~--~~~L~v~V~d~~ 95 (198)
.+.|.|+|++|++|+..+..+..||||+|.+.+ ..+.+|++.+++ .||.|||+|.|.+... ...|.|+|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~wne~f~~~~~~~~~~~~l~v~v~d~~ 90 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT-LNPVWNETFTFDLKPADKDRRLSIEVWDWD 90 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCC-CCCCccceEEEeCCchhcCCEEEEEEEECC
Confidence 388999999999999877778899999999963 257899998875 9999999999998743 468999999988
Q ss_pred cCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcC
Q 036193 96 CSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA 134 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~ 134 (198)
....+++||++.++|.++... ....||+|.+.
T Consensus 91 -~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~ 122 (131)
T cd04026 91 -RTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQ 122 (131)
T ss_pred -CCCCcceeEEEEEeHHHhCcC------ccCceEECcCc
Confidence 456789999999999999854 14569999875
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.73 E-value=8.9e-18 Score=128.50 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=87.8
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~ 92 (198)
...+.|.|+|++|++|...+..+.+||||++.+.+. .+.+|++.+++ .||+|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t-~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT-LNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC-CCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 446789999999999998888899999999999542 25678888775 999999999999974 3468999999
Q ss_pred ecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcce
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSG 140 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G 140 (198)
|++ ...++++||++.+++.. . +.. ...|+.|.+..|++.+
T Consensus 91 d~d-~~~~~~~iG~~~~~~~~-~-~~~-----~~~w~~l~~~~~~~i~ 130 (136)
T cd08404 91 DSD-RVTKNEVIGRLVLGPKA-S-GSG-----GHHWKEVCNPPRRQIA 130 (136)
T ss_pred ECC-CCCCCccEEEEEECCcC-C-Cch-----HHHHHHHHhCCCCeee
Confidence 998 56679999999999987 2 211 2346776655455443
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.73 E-value=4.2e-17 Score=124.05 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=87.4
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~ 92 (198)
...+.|.|+|++|++|...+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|.+... ...|.|+||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT-LNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEecc-CCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 45688999999999999888888999999999954 236799999875 9999999999999742 468999999
Q ss_pred ecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR 138 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~ 138 (198)
|++ ....|++||++.+++... + + ....||++.+..+++
T Consensus 89 d~d-~~~~~~~lG~~~i~l~~~--~---~--~~~~W~~~l~~~~~~ 126 (133)
T cd08384 89 DKD-IGKSNDYIGGLQLGINAK--G---E--RLRHWLDCLKNPDKK 126 (133)
T ss_pred eCC-CCCCccEEEEEEEecCCC--C---c--hHHHHHHHHhCCCCC
Confidence 988 456789999999999742 1 1 134577776644443
No 79
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=6.2e-17 Score=122.28 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=77.2
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCC-eeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEEEecccCCCCC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFN-NRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~-k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V~d~~~~~~~d 101 (198)
.|+|+|++|++|...+..+.+||||++++++.. +.+|++.++ +.||+|||+|.|.+. +....|.|+|||++ ...+|
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d-~~~~d 78 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYD-LLGSD 78 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECC-CCCCC
Confidence 378999999999988888999999999997632 357777776 499999999999986 44679999999998 45689
Q ss_pred ceeEEEEEeCceeec
Q 036193 102 RLVGRATLLVSDFIG 116 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~ 116 (198)
++||++.+++.+..-
T Consensus 79 d~iG~~~i~l~~~~~ 93 (124)
T cd04037 79 DLIGETVIDLEDRFF 93 (124)
T ss_pred ceeEEEEEeeccccc
Confidence 999999999987663
No 80
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.73 E-value=3.7e-17 Score=126.15 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=77.7
Q ss_pred CCcCcEEEEEEEEccCCCCCC--CCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEE
Q 036193 19 SSHSRTVEITVLSAEDLRVDG--RSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITL 89 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~--~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v 89 (198)
.+..+.|.|+|++|+||...+ ..+.+||||+|++.+. .+.||++.+++ .||+|||.|.|.++.. ...|.|
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t-~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHK-INPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCC-CCCccccEEEEECCHHHhCccEEEE
Confidence 355688999999999998766 2345899999999653 25689988875 9999999999999743 578999
Q ss_pred EEEecccCCCCCceeEEEEEeCce
Q 036193 90 EVQCRTCSGSGDRLVGRATLLVSD 113 (198)
Q Consensus 90 ~V~d~~~~~~~d~~lG~~~vpl~~ 113 (198)
+|+|++ .+.++++||++.+++..
T Consensus 90 ~V~d~d-~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 90 EVLNQD-SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEeCC-CCcCcceeceEEecCcC
Confidence 999998 56789999999999964
No 81
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.72 E-value=6.7e-17 Score=123.54 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=79.2
Q ss_pred CCCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEE
Q 036193 18 CSSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLE 90 (198)
Q Consensus 18 ~s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~ 90 (198)
..+..+.|+|+|++|++|...+..+.+||||+|.+.+. .+.+|++.+++ .||+|||+|.|.+... ...|.|+
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRT-LNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCC-CCCcccceEEEECCHHHhCCCEEEEE
Confidence 44567899999999999998888889999999999531 35678877765 9999999999999743 3589999
Q ss_pred EEecccCCCCCceeEEEEEeCcee
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDF 114 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l 114 (198)
|||++ ...+|++||++.+++...
T Consensus 89 v~d~~-~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 89 VLDYD-RIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEeCC-CCCCCceeEEEEECCccC
Confidence 99998 466789999999999753
No 82
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.72 E-value=7.3e-17 Score=123.35 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=78.6
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~ 92 (198)
...+.|.|+|++|+||...+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|.+.. ....|.|+||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT-LNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC-CCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34688999999999999878888999999999842 135689988775 999999999999863 2468999999
Q ss_pred ecccCCCCCceeEEEEEeCcee
Q 036193 93 CRTCSGSGDRLVGRATLLVSDF 114 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l 114 (198)
|++ ...+|++||++.+++.+.
T Consensus 91 d~~-~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 91 DKD-RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ECC-CCCCCcEeEEEEECCccC
Confidence 998 456789999999999875
No 83
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.71 E-value=2.6e-16 Score=118.07 Aligned_cols=81 Identities=16% Similarity=0.342 Sum_probs=68.2
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecc-----
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRT----- 95 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~----- 95 (198)
|+|+|++|+||+ +.+||||++.+++. .+++|++++++ +||+|||+|.|.+.. ...|.+.|||+.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~T-lnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDT-TEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCC-CCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 689999999996 44899999999752 36899999876 999999999999975 679999999972
Q ss_pred -cCCCCCceeEEEEEeCc
Q 036193 96 -CSGSGDRLVGRATLLVS 112 (198)
Q Consensus 96 -~~~~~d~~lG~~~vpl~ 112 (198)
.....|+++|.+.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 02457999999988885
No 84
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.71 E-value=8.7e-17 Score=122.63 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=77.2
Q ss_pred CCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEE
Q 036193 19 SSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEV 91 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V 91 (198)
.+..+.|+|+|++|++|+..+.++.+||||++.+... .+.+|++.++ +.||+|||+|.|.+... ...|.|+|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999998888899999999998431 3568887765 49999999999998643 35799999
Q ss_pred EecccCCCCCceeEEEEEeCc
Q 036193 92 QCRTCSGSGDRLVGRATLLVS 112 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~ 112 (198)
||++ ...+|++||++.+++.
T Consensus 89 ~d~~-~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 89 VDYD-RVGHNELIGVCRVGPN 108 (134)
T ss_pred EECC-CCCCCceeEEEEECCC
Confidence 9998 4567999999999987
No 85
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.71 E-value=1.1e-16 Score=122.56 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~ 92 (198)
+..+.|+|+|++|++|...+..+.+||||++.+.+. .+.+|++.+++ .||+|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wnE~F~f~i~~~~l~~~~l~~~V~ 89 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT-IDPFYNESFSFKVPQEELENVSLVFTVY 89 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC-CCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence 456889999999999998888889999999998432 35688888775 9999999999999632 347999999
Q ss_pred ecccCCCCCceeEEEEEeC
Q 036193 93 CRTCSGSGDRLVGRATLLV 111 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl 111 (198)
|++ ...+|++||++.+..
T Consensus 90 d~d-~~~~~~~iG~~~l~~ 107 (135)
T cd08410 90 GHN-VKSSNDFIGRIVIGQ 107 (135)
T ss_pred eCC-CCCCCcEEEEEEEcC
Confidence 998 567899999998665
No 86
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.71 E-value=1.7e-16 Score=118.79 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=81.2
Q ss_pred EEEEccCCCCCCCCCCCCcEEEEEECCCC------eeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEEEecccC---
Q 036193 28 TVLSAEDLRVDGRSVKKKAFAVVKLDPFN------NRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEVQCRTCS--- 97 (198)
Q Consensus 28 ~VisA~~L~~~~~~~~~dpYv~v~l~~~~------k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V~d~~~~--- 97 (198)
..++|++|...+.++.+||||++.+.+.. +.+|++++++ .||+|||+|.|.+. .....|.|+|||++ .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t-~nP~wne~f~f~~~~~~~~~l~~~V~d~d-~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN-LNPDFVTTFTVDYYFEEVQKLRFEVYDVD-SKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC-CCCCceEEEEEEEEeEeeeEEEEEEEEec-CCcC
Confidence 45899999988888999999999997643 4899999886 99999999999875 34578999999998 3
Q ss_pred -CCCCceeEEEEEeCceeeccccCCCcceeEEEEEE
Q 036193 98 -GSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR 132 (198)
Q Consensus 98 -~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~ 132 (198)
..+|++||++.+++.+++.+. ....+|.|.
T Consensus 83 ~~~~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~ 113 (120)
T cd04048 83 DLSDHDFLGEAECTLGEIVSSP-----GQKLTLPLK 113 (120)
T ss_pred CCCCCcEEEEEEEEHHHHhcCC-----CcEEEEEcc
Confidence 457999999999999998653 145678874
No 87
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1.2e-16 Score=123.07 Aligned_cols=94 Identities=10% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC-----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEE
Q 036193 19 SSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF-----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLE 90 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~-----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~ 90 (198)
....+.|.|+|++|+||...+..+..||||++.+.+. .+.||++.+++ .||+|||+|.|.++. ....|.|+
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t-~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ-PDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC-CCCcEeeeEEEECCHHHhCccEEEEE
Confidence 3567899999999999998887888999999999532 25689988875 999999999999974 35699999
Q ss_pred EEecccCCCCCceeEEEEEeCcee
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDF 114 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l 114 (198)
|||.+ ...++++||++.+++...
T Consensus 90 V~~~~-~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 90 VYNKR-KMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEECC-CCCCCcEEEEEEECCcCC
Confidence 99998 567899999999988743
No 88
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=2.2e-16 Score=118.52 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=79.8
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEE-eCC---CCceEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMK-LPM---HVTFITLEV 91 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~v~V 91 (198)
+..+.|+|+|++|++|...+..+.+||||++.+.+ ..+.+|++.+++ .||+|||+|.|. +.. ....|.|+|
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 34578999999999999877788999999999853 246899998875 999999999996 332 246899999
Q ss_pred EecccCCCCCceeEEEEEeCceeecc
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
||++ .. ++++||++.++++++..+
T Consensus 91 ~d~~-~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 91 LDED-RF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEcC-Cc-CCeeEEEEEEEcccCCCC
Confidence 9998 34 899999999999999865
No 89
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.70 E-value=1.3e-16 Score=122.70 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=77.3
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~ 92 (198)
+..+.|.|+|++|+||...+ .+.+||||+|.+.+. .+.+|++.+++ .||+|||+|.|.++. ....|.|+|+
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~-~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGA-ASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCC-CCCcccceEEEECCHHHhCccEEEEEEE
Confidence 45678999999999998777 778999999999653 35688887765 999999999999973 3478999999
Q ss_pred ecccCCCCCceeEEEEEeCceee
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFI 115 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~ 115 (198)
+.+ ...++++||++.|+.....
T Consensus 90 ~~~-~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 90 QSG-GVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred eCC-CCCCcceEEEEEECCcccC
Confidence 988 4667999999999975443
No 90
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.70 E-value=1.2e-16 Score=122.70 Aligned_cols=95 Identities=12% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC--CceEEEEEE
Q 036193 19 SSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH--VTFITLEVQ 92 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~--~~~L~v~V~ 92 (198)
-+..+.|.|+|++|+||+.....+..||||+|++-.. .|.+|++.+++..||+|||+|.|+++.+ ...|.|+||
T Consensus 10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence 3667889999999999987655566799999998431 3778998887645799999999999854 357888888
Q ss_pred ecccCCCCCceeEEEEEeCcee
Q 036193 93 CRTCSGSGDRLVGRATLLVSDF 114 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l 114 (198)
|++ +..++++||++.+..++.
T Consensus 90 d~~-~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRS-SVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCC-CCcCCceEEEEEECCccC
Confidence 887 566899999999999763
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.69 E-value=1.5e-16 Score=120.46 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=87.4
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~ 92 (198)
+..+.|.|+|++|++|+..+..+.+||||++.+.+. .+.+|++.+++ .||.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~-~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT-LNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecC-CCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 345789999999999998877888999999999653 25688888765 9999999999999753 478999999
Q ss_pred ecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCC
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGI 137 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~ 137 (198)
|.+ ...++++||.+.+++++ .+. ....||+|.+..++
T Consensus 90 d~~-~~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 90 DKD-SVGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred ecC-CCCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 998 45679999999999998 221 13457777765443
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.69 E-value=7.1e-17 Score=163.78 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=99.7
Q ss_pred cCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC--CCceEEEEEEecccCC
Q 036193 21 HSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM--HVTFITLEVQCRTCSG 98 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~--~~~~L~v~V~d~~~~~ 98 (198)
-.|.|.|+|++|+||. +.++++||||++.++...+.||++++++ .||+|||.|.|.+.. .+..|+|+|||++ .
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d~d--~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKSKN--T 2052 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEecC--c
Confidence 3799999999999998 5578999999999986557799999986 999999999988864 3478999999999 5
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceE---EEEEEEEEe
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGI---LNVSVRVKE 150 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~---L~l~v~f~~ 150 (198)
++++.||.+.|++.++..+.. ...+|+|.+ +|+..|. |++.+.|.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-----YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-----eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 577799999999999997653 346999985 3555677 999988764
No 93
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.9e-15 Score=135.77 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=102.2
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC--CeeEeeecCCCCCCCeeceEEEEEeCC---CCceEEEEEEeccc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF--NNRVTKVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQCRTC 96 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~--~k~rT~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~d~~~ 96 (198)
...|.|+|+.|++|...+..+.+||||++++.++ .+++|++.++. +||+|||+|.|.+.. ....|.|.|||.+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~t-lnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d- 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKT-LNPVFNETFRFEVPYEELSNRVLHLSVYDFD- 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecC-cCCccccceEeecCHHHhccCEEEEEEEecC-
Confidence 5789999999999998776678999999999764 57899999886 999999999999863 4689999999999
Q ss_pred CCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC---CCcceEEEEEEEEEec
Q 036193 97 SGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR---GIRSGILNVSVRVKEG 151 (198)
Q Consensus 97 ~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~---g~~~G~L~l~v~f~~~ 151 (198)
++.++++||++.++|..+..... ...|++|.... ....|+|.|++++.+.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred CcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeecC
Confidence 78899999999999887764431 44688887742 2223899999999986
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.66 E-value=1.2e-15 Score=105.49 Aligned_cols=82 Identities=24% Similarity=0.351 Sum_probs=70.4
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCe--eEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEEEecccCCCCC
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNN--RVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k--~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V~d~~~~~~~d 101 (198)
|+|+|++|+||...+..+..||||++.+.+... ++|++.+++ .||.|||+|.|.+. .....|.|+|||.+ ....|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~-~~~~~ 78 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKD-SFGKD 78 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEET-SSSSE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECC-CCCCC
Confidence 789999999999877778899999999987544 899999876 99999999999976 34566999999998 44559
Q ss_pred ceeEEEE
Q 036193 102 RLVGRAT 108 (198)
Q Consensus 102 ~~lG~~~ 108 (198)
++||+++
T Consensus 79 ~~iG~~~ 85 (85)
T PF00168_consen 79 ELIGEVK 85 (85)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
Confidence 9999985
No 95
>PLN02270 phospholipase D alpha
Probab=99.65 E-value=4.1e-15 Score=140.42 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=107.4
Q ss_pred CcEEEEEEEEccCCCCCC------------------CCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC
Q 036193 22 SRTVEITVLSAEDLRVDG------------------RSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH 83 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~------------------~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~ 83 (198)
.|+|+|+|+.|++|+..+ ..+.+||||+|.+++....||++..+...||+|||+|.++++..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 588999999999997521 11457999999999877889999987657999999999999988
Q ss_pred CceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcc---eEEEEEEEEEecCCC
Q 036193 84 VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRS---GILNVSVRVKEGSGL 154 (198)
Q Consensus 84 ~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~---G~L~l~v~f~~~~~~ 154 (198)
.+.|.|.|+|.+ ..+..+||.+.||+.+++.+.. ...||++.+.+|++. .+|+|+++|.+....
T Consensus 87 ~~~v~f~vkd~~--~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 87 ASNIIFTVKDDN--PIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cceEEEEEecCC--ccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence 899999999999 8889999999999999998754 345999999888652 389999999996644
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.64 E-value=2.1e-15 Score=110.97 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=74.3
Q ss_pred EEEEEEccCCCCCCCCCCCCcEEEEEECCC-----CeeEeeecCCCCCCCeeceEEEEEeCC-----CCceEEEEEEecc
Q 036193 26 EITVLSAEDLRVDGRSVKKKAFAVVKLDPF-----NNRVTKVDAIGGSYPAWDEKLVMKLPM-----HVTFITLEVQCRT 95 (198)
Q Consensus 26 ~V~VisA~~L~~~~~~~~~dpYv~v~l~~~-----~k~rT~v~~~~g~nP~WNE~f~f~v~~-----~~~~L~v~V~d~~ 95 (198)
-+..++|++|+..+.++.+||||++++.+. .+++|++.+++ .||+|| +|.|.+.. ....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t-~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNT-LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccC-CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 355679999998888899999999998653 25899999886 999999 68887641 1579999999998
Q ss_pred cCCCCCceeEEEEEeCceeecc
Q 036193 96 CSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
...+|++||++.++++++...
T Consensus 81 -~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 -SSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred -CCCCCcEEEEEEEEHHHHhcC
Confidence 566799999999999999844
No 97
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-16 Score=141.19 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=90.1
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC--CceEEEEEEecc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH--VTFITLEVQCRT 95 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~--~~~L~v~V~d~~ 95 (198)
...|.|+|..|+||..++.+|-+||||.+.+-++ .|++|++++.+ +||+|||+|+|.+.+. ...|.|||||++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~-LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT-LNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh-cCccccceeEEecccccccceeEEEEeccc
Confidence 4578899999999999999999999999999543 47899999876 9999999999999765 479999999999
Q ss_pred cCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 96 CSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
++++++|+|+..+-+++|.... ...||.|..
T Consensus 258 -rTsRNDFMGslSFgisEl~K~p------~~GWyKlLs 288 (683)
T KOG0696|consen 258 -RTSRNDFMGSLSFGISELQKAP------VDGWYKLLS 288 (683)
T ss_pred -ccccccccceecccHHHHhhcc------hhhHHHHhh
Confidence 7889999999999999998764 235777766
No 98
>PLN02223 phosphoinositide phospholipase C
Probab=99.59 E-value=1.8e-14 Score=131.36 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=89.4
Q ss_pred CcEEEEEEEEccCCCC-----CCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEE
Q 036193 22 SRTVEITVLSAEDLRV-----DGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEV 91 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~-----~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V 91 (198)
..+|.|+|++|+++.. .+.....||||+|.|.|. .+.+|.+. ++|.||+|||+|.|.+. ++-+.|.|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCceEEEEEE
Confidence 5789999999998741 122356899999999762 35677655 55799999999999996 4567899999
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEE
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRV 148 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f 148 (198)
+|++ ....|+|+|++.+|+..+..|. .+.+|++++|.+-....|-++|
T Consensus 487 ~D~D-~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f 534 (537)
T PLN02223 487 YDYE-VSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRF 534 (537)
T ss_pred EecC-CCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEE
Confidence 9998 4467899999999999998875 3779999888552223333333
No 99
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=137.39 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=118.8
Q ss_pred CCCCCcccccccCCCCCCcCcEEEEEEEEccCCCCCC--CCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEe
Q 036193 3 PSHPQKSESLHMENSCSSHSRTVEITVLSAEDLRVDG--RSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKL 80 (198)
Q Consensus 3 ~~~p~~~~~~~~~~~~s~~~~~L~V~VisA~~L~~~~--~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v 80 (198)
|.|=|.+.++++....-.+.|.|+|+|.+|++|+..+ +.+..|||+++.+.+.-..||++.++. .||+|||+|++.+
T Consensus 416 Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt-~nPvwNEt~Yi~l 494 (1227)
T COG5038 416 PNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNT-LNPVWNETFYILL 494 (1227)
T ss_pred CceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeecc-CCccccceEEEEe
Confidence 4455566666665435577899999999999999766 678999999999876567799999986 9999999999999
Q ss_pred CCCCceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecCCC
Q 036193 81 PMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGSGL 154 (198)
Q Consensus 81 ~~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~~~ 154 (198)
....+.|.++|||.+ +...|+.+|++.++|..+....... ..-|++.. +.+..|+|++.++|.|....
T Consensus 495 ns~~d~L~LslyD~n-~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k~vGrL~yDl~ffp~~e~ 562 (1227)
T COG5038 495 NSFTDPLNLSLYDFN-SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTKNVGRLTYDLRFFPVIED 562 (1227)
T ss_pred cccCCceeEEEEecc-ccCCcceeeeEEechHHhhhccccc----cceeeeec-cCccceEEEEeeeeecccCC
Confidence 988899999999966 4778999999999999988765322 23556554 56889999999999997765
No 100
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=8.5e-15 Score=134.23 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=102.3
Q ss_pred CCCCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEeccc
Q 036193 17 SCSSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTC 96 (198)
Q Consensus 17 ~~s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~ 96 (198)
|.|-=...+.++|+.|++|...++.|++||||+++++. .+.||+++... +||+|||+|.|.+......|.+.|||++.
T Consensus 289 gsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~k-tkrrtrti~~~-lnpvw~ekfhfechnstdrikvrvwded~ 366 (1283)
T KOG1011|consen 289 GSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-TKRRTRTIHQE-LNPVWNEKFHFECHNSTDRIKVRVWDEDN 366 (1283)
T ss_pred cccccceeeEEeeeecccceecccCCCCCCcEEEeecc-cchhhHhhhhc-cchhhhhheeeeecCCCceeEEEEecCcc
Confidence 44444567999999999999999999999999999986 58899999865 99999999999998878899999999761
Q ss_pred ---------C-CCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC--CcceEEEEEEEEEec
Q 036193 97 ---------S-GSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG--IRSGILNVSVRVKEG 151 (198)
Q Consensus 97 ---------~-~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g--~~~G~L~l~v~f~~~ 151 (198)
. -..|+|||+..|-+..+..+ ...||.|.++.. -..|.|+|.|.+.-.
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEc
Confidence 0 12589999999998877533 457999988643 467887777776543
No 101
>PLN02952 phosphoinositide phospholipase C
Probab=99.55 E-value=9.3e-14 Score=128.72 Aligned_cols=120 Identities=21% Similarity=0.324 Sum_probs=95.9
Q ss_pred CcCcEEEEEEEEccCCCCC------CCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEE
Q 036193 20 SHSRTVEITVLSAEDLRVD------GRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFIT 88 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~------~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~ 88 (198)
+...+|.|+|++|++|... +.....||||+|.+.| ..+.+|+++.++ .||+|||+|.|.+.. +-..|.
T Consensus 467 ~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllr 545 (599)
T PLN02952 467 PVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLR 545 (599)
T ss_pred CccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEE
Confidence 3467899999999997421 2223459999999976 246799999876 999999999999874 457899
Q ss_pred EEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEE
Q 036193 89 LEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVK 149 (198)
Q Consensus 89 v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~ 149 (198)
|+|+|++ ....|+++|++.+|+..+..|. .+++|++.+|...+..+|-|+|.
T Consensus 546 f~V~D~D-~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 546 IEVREYD-MSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEecC-CCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 9999988 4567999999999999998875 38899988887767667766664
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.55 E-value=8.5e-14 Score=97.98 Aligned_cols=93 Identities=25% Similarity=0.390 Sum_probs=78.7
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCC--CeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCC
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF--NNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSG 100 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~--~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~ 100 (198)
.|.|+|+.|++|.........+|||++++.+. ...+|++..+. .||.|||+|.|.+... ...|.|+||++. ...+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~-~~~~ 78 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKD-RFGR 78 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecC-CccC
Confidence 37899999999987665567899999999864 47899988775 6999999999999865 789999999987 3446
Q ss_pred CceeEEEEEeCceeeccc
Q 036193 101 DRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~ 118 (198)
+.+||.+.+++.++..+.
T Consensus 79 ~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CceeEEEEEEHHHcccCc
Confidence 899999999999887653
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.50 E-value=2.7e-13 Score=94.63 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=76.8
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccCCCCCce
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~~~~d~~ 103 (198)
|.|.|++|++|.........+|||++++.+....+|++..+. .||.|||.|.|.+.. ....|.|+||+.+ ....+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~-~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKD-RFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecC-CCCCCce
Confidence 579999999998755567899999999987467899888765 899999999999987 5688999999988 3445889
Q ss_pred eEEEEEeCceee
Q 036193 104 VGRATLLVSDFI 115 (198)
Q Consensus 104 lG~~~vpl~~l~ 115 (198)
||.+.+++.++.
T Consensus 79 ig~~~~~l~~l~ 90 (102)
T cd00030 79 LGEVEIPLSELL 90 (102)
T ss_pred eEEEEEeHHHhh
Confidence 999999999887
No 104
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.47 E-value=4.1e-13 Score=124.35 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=91.1
Q ss_pred cCcEEEEEEEEccCCCC------CCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeC-CCCceEEE
Q 036193 21 HSRTVEITVLSAEDLRV------DGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITL 89 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~------~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v 89 (198)
...+|.|+|++++++.. .+.....||||+|.|.|. .+.+|++..+ |.||+|||+|.|++. ++-+.|+|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEE
Confidence 45789999999998631 122345799999999652 3568887655 599999999999987 44689999
Q ss_pred EEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc--ceEEEEEEEE
Q 036193 90 EVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR--SGILNVSVRV 148 (198)
Q Consensus 90 ~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~--~G~L~l~v~f 148 (198)
+|+|++ ...+|+|+|+..+|+..|..|+ +..+|++++|.. .-.|-+.+.|
T Consensus 546 ~V~d~d-~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHD-INEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECC-CCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999998 3467999999999999998885 367899987743 2355555544
No 105
>PLN02228 Phosphoinositide phospholipase C
Probab=99.46 E-value=1e-12 Score=121.13 Aligned_cols=121 Identities=15% Similarity=0.267 Sum_probs=96.3
Q ss_pred CcEEEEEEEEccCCCC---C---CCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCee-ceEEEEEeCC-CCceEEE
Q 036193 22 SRTVEITVLSAEDLRV---D---GRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAW-DEKLVMKLPM-HVTFITL 89 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~---~---~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~W-NE~f~f~v~~-~~~~L~v 89 (198)
..+|.|+|++|++|.. . +.....||||+|.+.|. .+.+|++.+++ .||+| ||+|.|.+.. +-+.|.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEE
Confidence 4589999999998731 1 22345799999999752 36799998765 89999 9999999974 4589999
Q ss_pred EEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc--ceEEEEEEEEEecC
Q 036193 90 EVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR--SGILNVSVRVKEGS 152 (198)
Q Consensus 90 ~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~--~G~L~l~v~f~~~~ 152 (198)
+|+|++ ...+|+++|++.+|+..|..|+ +..+|.+.+|.. ..+|-+.+.|.+..
T Consensus 509 ~V~D~d-~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 509 KVQDYD-NDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEeCC-CCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 999987 4567999999999999998775 377899988753 45788888887764
No 106
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.45 E-value=5.5e-13 Score=124.31 Aligned_cols=119 Identities=26% Similarity=0.331 Sum_probs=95.8
Q ss_pred cEEEEEEEEccCCC-CCC---CCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEEEe
Q 036193 23 RTVEITVLSAEDLR-VDG---RSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEVQC 93 (198)
Q Consensus 23 ~~L~V~VisA~~L~-~~~---~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V~d 93 (198)
.+|.|+|++++++. ... +....||||.|+|.|- .+.+|++++++|-||.|+|+|.|++. ++-+.|+|+|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 38999999999764 322 2256899999999762 36799988888899999999999997 556899999999
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc--ceEEEEEEEEEe
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR--SGILNVSVRVKE 150 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~--~G~L~l~v~f~~ 150 (198)
++ ...+|+|+|+.++|+.+|..|+ +..+|.+..|.. ...|-+.+++.+
T Consensus 696 ~d-~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YD-YIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cC-CCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEec
Confidence 99 4556999999999999999885 367888887743 456777777653
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.42 E-value=2.6e-12 Score=118.86 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=91.3
Q ss_pred CcEEEEEEEEccCCC----C--CCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEE
Q 036193 22 SRTVEITVLSAEDLR----V--DGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLE 90 (198)
Q Consensus 22 ~~~L~V~VisA~~L~----~--~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~ 90 (198)
..+|.|+|++++++. . .+.....||||+|.|.|. .+.+|++++++ .||+|||+|.|.+. ++-+.|+|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEE
Confidence 568999999999852 1 122346799999999752 46799999886 79999999999986 445899999
Q ss_pred EEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc--ceEEEEEEEE
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR--SGILNVSVRV 148 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~--~G~L~l~v~f 148 (198)
|+|++ ...+|+|+|++.+|+..|..|+ +..+|++.+|.. ...|-+.+.|
T Consensus 530 V~d~D-~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYD-MSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECC-CCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99988 3467999999999999998885 367899987743 2355555554
No 108
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.42 E-value=5.5e-13 Score=123.12 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=107.0
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCc
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDR 102 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~ 102 (198)
..|.|+|..|+||...+..+..||||+|.+|.+...||.|+.+. +.|.|.|.|+|.++..-..|.|.|||++ ..+|+
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ks-L~PF~gEe~~~~iP~~F~~l~fYv~D~d--~~~D~ 81 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKS-LCPFFGEEFYFEIPRTFRYLSFYVWDRD--LKRDD 81 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhh-cCCccccceEEecCcceeeEEEEEeccc--ccccc
Confidence 45899999999999888889999999999998778999999986 9999999999999987789999999999 88999
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEc--CCCCcceEEEEEEEEEecCC
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRD--ARGIRSGILNVSVRVKEGSG 153 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~--~~g~~~G~L~l~v~f~~~~~ 153 (198)
.||++.|.=.++..-.. ...|+.|.. ++...+|+|||.+.+.+...
T Consensus 82 ~IGKvai~re~l~~~~~-----~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPG-----KDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred ccceeeeeHHHHhhCCC-----CccceeccccCCChhhceeEEEEEEeccccC
Confidence 99999998777765431 345777766 56789999999999998764
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.42 E-value=6.4e-13 Score=128.18 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=103.6
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC-CCCceEEEEEEecccCCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP-MHVTFITLEVQCRTCSGSG 100 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~-~~~~~L~v~V~d~~~~~~~ 100 (198)
.|.|+|.+.+|+||+..+..+.+||||.+.+++...++|++++++ +||+|||.|.+++. .....|.+.|+|++ ...+
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kkt-lNPvwNEe~~i~v~~r~~D~~~i~v~Dwd-~~~k 1116 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKT-LNPVWNEEFTIEVLNRVKDVLTINVNDWD-SGEK 1116 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhcc-CCCCccccceEeeeccccceEEEEEeecc-cCCC
Confidence 689999999999999999999999999999998668899999986 99999999999997 45689999999998 4567
Q ss_pred CceeEEEEEeCceeeccccCCCcceeEEEEEEcCC-CCcceEEEEEEEEEecCCCC
Q 036193 101 DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR-GIRSGILNVSVRVKEGSGLG 155 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~-g~~~G~L~l~v~f~~~~~~~ 155 (198)
++.||.+.++|..+..+.. .....+|..+. +...|.++....|.+..+.-
T Consensus 1117 nd~lg~~~idL~~l~~~~~-----~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGT-----TNSNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred ccccccccccHhhcCcCCc-----cceeeeccCcceEecccEeecceecchhhhhc
Confidence 9999999999999987652 11233343322 34578888888887766544
No 110
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=3.7e-12 Score=97.63 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=76.6
Q ss_pred EEEEEEEEccCCCC--CCCCCC--CCcEEEEEECC--CCeeEeeecCCCCCC--CeeceEEEEEeCC-------------
Q 036193 24 TVEITVLSAEDLRV--DGRSVK--KKAFAVVKLDP--FNNRVTKVDAIGGSY--PAWDEKLVMKLPM------------- 82 (198)
Q Consensus 24 ~L~V~VisA~~L~~--~~~~~~--~dpYv~v~l~~--~~k~rT~v~~~~g~n--P~WNE~f~f~v~~------------- 82 (198)
.|+|.|..|+|+.. ....|. +||||++++.+ ..+++|.|..+. +| |.||+.|.|++.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 38999999999653 334564 89999999987 367899999886 77 9999999998853
Q ss_pred --------C---CceEEEEEEecccCCCCCceeEEEEEeCceeeccc
Q 036193 83 --------H---VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 83 --------~---~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~ 118 (198)
. ...|.|+|||.+ .+..|++||++.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D-~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDND-KFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECc-ccCCCCcceEEEEEhhhccccc
Confidence 1 368999999999 5678999999999999887654
No 111
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.36 E-value=1.4e-12 Score=95.63 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=72.9
Q ss_pred EEEEEEEccCCCCCC---CCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCC
Q 036193 25 VEITVLSAEDLRVDG---RSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 25 L~V~VisA~~L~~~~---~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d 101 (198)
|.|+|.+|+|+.... +.+++||||.+.++...+.||++. .||.|||+|.|++. ....+.|.|||.. ....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~Vd-k~nEiel~VyDk~--~~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPVE-KNNEEEVIVYDKG--GDQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEec-CCcEEEEEEEeCC--CCee
Confidence 689999999998655 567889999999998668888864 89999999999996 4689999999976 4455
Q ss_pred ceeEEEEEeCceeecc
Q 036193 102 RLVGRATLLVSDFIGG 117 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~ 117 (198)
..||..=++++++...
T Consensus 74 ~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 74 VPVGLLWLRLSDIAEE 89 (109)
T ss_pred cceeeehhhHHHHHHH
Confidence 6799999999988754
No 112
>PLN02352 phospholipase D epsilon
Probab=99.31 E-value=2.8e-11 Score=114.32 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=94.8
Q ss_pred cCcEEEEEEEEccCCCCC----CCC-CCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCC-ceEEEEEEec
Q 036193 21 HSRTVEITVLSAEDLRVD----GRS-VKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHV-TFITLEVQCR 94 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~----~~~-~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~-~~L~v~V~d~ 94 (198)
-.|+|+++|..|+-+... ... ...||||+|.+++....|| .+. .||+|||+|.++++... +.|.|.|+|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~-~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHE-YDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCC-CCCccccceeEEeeeecCCcEEEEEec-
Confidence 358999999999855332 111 1239999999998666788 343 69999999999999876 689999987
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCc-ce-EEEEEEEEEecCCC
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIR-SG-ILNVSVRVKEGSGL 154 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~-~G-~L~l~v~f~~~~~~ 154 (198)
+..+||.+.||+.+++.+.. ....||+|.+.+|++ .| +|+|+++|.+....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 36799999999999998742 145799999988765 34 99999999998765
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.7e-11 Score=108.14 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=77.6
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~ 92 (198)
+..+.|.|.|+.|++|+..+..+..||||++++-.. .|.+|.+.++. .||+|||+|.|.++.+ ...|.|+||
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~-~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT-LNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC-CCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 557999999999999998888889999999998432 36788877775 9999999999999743 468999999
Q ss_pred ecccCCCCCceeEEEEEeCce
Q 036193 93 CRTCSGSGDRLVGRATLLVSD 113 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~ 113 (198)
|++ ...++++||.+.+-...
T Consensus 374 d~d-~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 374 DHD-TLGSNDLIGRCILGSDS 393 (421)
T ss_pred Ecc-cccccceeeEEEecCCC
Confidence 999 56678899988877764
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.24 E-value=4.2e-11 Score=112.32 Aligned_cols=101 Identities=25% Similarity=0.302 Sum_probs=81.2
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeec-eEEEEEeC-CCCceEEEEEEecc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWD-EKLVMKLP-MHVTFITLEVQCRT 95 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WN-E~f~f~v~-~~~~~L~v~V~d~~ 95 (198)
..+|.|.|+.|+.|....+ +...|||+|.|-|. .+++|.++.++|+||+|| |+|.|.+. ++-..|+|.|++++
T Consensus 1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 4679999999999985443 45689999999652 366666666667999999 99999997 55689999999999
Q ss_pred cCCCC-CceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 96 CSGSG-DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 96 ~~~~~-d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
+++ ..|||++..|+..+..|. .+.+|++
T Consensus 1143 --mfs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN 1171 (1267)
T KOG1264|consen 1143 --MFSDPNFLAQATYPVKAIKSGF--------RSVPLKN 1171 (1267)
T ss_pred --ccCCcceeeeeecchhhhhccc--------eeeeccc
Confidence 665 459999999999888775 3667765
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.96 E-value=3.7e-09 Score=96.80 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=101.6
Q ss_pred cCcEEEEEEEEccCCCCCCCCC-CCCcEEEEEECCCCeeEeeecCCCCCCCeece-EEEEEeCC---CCceEEEEEEecc
Q 036193 21 HSRTVEITVLSAEDLRVDGRSV-KKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDE-KLVMKLPM---HVTFITLEVQCRT 95 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~~~~~-~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE-~f~f~v~~---~~~~L~v~V~d~~ 95 (198)
+.+.|-|+|..|++|+.+++.. ..|.||.+.+.. ..++|.+-.+. +||.||- =|+|.+++ +.+.|.+.++|++
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~ks-lnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKS-LNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhh-cCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 3678999999999999877653 569999999985 57899888875 9999995 49999974 4689999999999
Q ss_pred cCCCCCceeEEEEEeCceeecccc-----CCCcceeEEEEEEcCCCCcceEEEEEEEEEe
Q 036193 96 CSGSGDRLVGRATLLVSDFIGGYV-----PENHLNFLSYLLRDARGIRSGILNVSVRVKE 150 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~~~-----~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~ 150 (198)
....++-||++.|.++-+.-... .....-..||++.+.=...+|+|++-+++.-
T Consensus 79 -tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 79 -TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDL 137 (1169)
T ss_pred -ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEee
Confidence 56679999999999997664331 1234567899999864567899998877653
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.92 E-value=2.8e-10 Score=105.88 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=97.4
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCC------------------------------eeEeeecCCCCCC
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFN------------------------------NRVTKVDAIGGSY 69 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~------------------------------k~rT~v~~~~g~n 69 (198)
+....|.|.+..|+||-.++.+|.+|||+...+-+.. .+.|.+.+++ +|
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T-Ln 189 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT-LN 189 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc-CC
Confidence 3455677889999999988888999999998874310 1235555555 99
Q ss_pred CeeceEEEEEeCC-CCceEEEEEEecc--------------------------------cCCC---CCceeEEEEEeCce
Q 036193 70 PAWDEKLVMKLPM-HVTFITLEVQCRT--------------------------------CSGS---GDRLVGRATLLVSD 113 (198)
Q Consensus 70 P~WNE~f~f~v~~-~~~~L~v~V~d~~--------------------------------~~~~---~d~~lG~~~vpl~~ 113 (198)
|.|||+|.|.+.+ +...+++.|||++ +..+ .|+|||.++|||.+
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999974 4679999999864 1112 28899999999999
Q ss_pred eeccccCCCcceeEEEEEEcCC--CCcceEEEEEEEEEecCC
Q 036193 114 FIGGYVPENHLNFLSYLLRDAR--GIRSGILNVSVRVKEGSG 153 (198)
Q Consensus 114 l~~~~~~~~~~~~~~~~L~~~~--g~~~G~L~l~v~f~~~~~ 153 (198)
+...+ -..||.|..++ .+.+|.++|.+++.....
T Consensus 270 iP~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 270 IPPDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred CCcch------HHHHhccCcccccccccceEEEEEEEeeecc
Confidence 97654 23588888865 478999999999987543
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.85 E-value=8.6e-10 Score=102.72 Aligned_cols=92 Identities=23% Similarity=0.279 Sum_probs=79.0
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC------CeeEeeecCCCCCCCeeceEEEEEeCCC-----CceEEEE
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF------NNRVTKVDAIGGSYPAWDEKLVMKLPMH-----VTFITLE 90 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~------~k~rT~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~v~ 90 (198)
..+|.|.|+.|+++..-|.+|-+||||+|.+.+. ..++|+|++.+ +||+++|+|.|.|+++ ...|.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rt-LnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRT-LNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcc-ccchhhhheeeecCccccccccceEEEE
Confidence 4678899999999988888999999999999873 25789999886 9999999999999853 4799999
Q ss_pred EEecccCCCCCceeEEEEEeCceee
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDFI 115 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l~ 115 (198)
|||++ -...++|-|++.+-|.++.
T Consensus 1025 VMDHD-~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHD-YLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccc-eecccccchHHHHhhCCCC
Confidence 99999 3446899999988888765
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.52 E-value=2.2e-07 Score=86.66 Aligned_cols=109 Identities=20% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCCCCcEEEEEECCCC---eeEeeecCCCCCCCeeceEEEEEeCCC----------------CceEEEEEEecccCCCCC
Q 036193 41 SVKKKAFAVVKLDPFN---NRVTKVDAIGGSYPAWDEKLVMKLPMH----------------VTFITLEVQCRTCSGSGD 101 (198)
Q Consensus 41 ~~~~dpYv~v~l~~~~---k~rT~v~~~~g~nP~WNE~f~f~v~~~----------------~~~L~v~V~d~~~~~~~d 101 (198)
++.+||||++...+.. ..+|++.+++ .||.|||.|+|.+... ...|.+++|+..-....+
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt-~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~ 226 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKT-TNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND 226 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeec-cCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence 4569999999987632 3588888886 9999999999999643 357888999843134469
Q ss_pred ceeEEEEEeCceeeccccCCCcceeEEEEEEcC-CC------CcceEEEEEEEEEecCCCC
Q 036193 102 RLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA-RG------IRSGILNVSVRVKEGSGLG 155 (198)
Q Consensus 102 ~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~-~g------~~~G~L~l~v~f~~~~~~~ 155 (198)
.|+|++++|+..+..... ...||-|... +| .--|.+++.+++..+-+-+
T Consensus 227 ~FlGevrv~v~~~~~~s~-----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 227 VFLGEVRVPVDVLRQKSS-----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred hhceeEEeehhhhhhccC-----ccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 999999999987764432 2358888873 22 2357899999998876653
No 119
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.40 E-value=1.1e-06 Score=83.77 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=80.4
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC------CeeEeeecCCCCCCCeeceE-EEEEeC--CCCceEEEEEE
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF------NNRVTKVDAIGGSYPAWDEK-LVMKLP--MHVTFITLEVQ 92 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~------~k~rT~v~~~~g~nP~WNE~-f~f~v~--~~~~~L~v~V~ 92 (198)
..++.|+||+++-|.+.. ...||.|.+-|- .++||++..+++.||+|||. |.|.-- ++-+.|.|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 478999999999998643 459999999652 36899999999999999975 888653 45689999999
Q ss_pred ecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcce
Q 036193 93 CRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSG 140 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G 140 (198)
+++ .++||.--+|+..+..|+. ..-|+++.+.+-+
T Consensus 778 eEg-----gK~ig~RIlpvd~l~~GYr--------hv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 778 EEG-----GKFIGQRILPVDGLNAGYR--------HVCLRSESNQPLT 812 (1189)
T ss_pred ccC-----CceeeeeccchhcccCcce--------eEEecCCCCCccc
Confidence 876 6799999999998887762 4456666554433
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.32 E-value=5.4e-07 Score=87.92 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEE-eC---CCCceEEEE
Q 036193 19 SSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMK-LP---MHVTFITLE 90 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~-v~---~~~~~L~v~ 90 (198)
|...++|.|.|..|++|..-.-....||||+..+.++ .|.||++++++ .||.+||.+.+. .+ ...+.|.+.
T Consensus 1520 sY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred EEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccccc-CCCchhhheeecCCchhhhhhheeeee
Confidence 3446899999999999965444567899999999763 47899999987 999999999887 33 235899999
Q ss_pred EEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEc
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRD 133 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~ 133 (198)
|+..+ ....+.+||.+.|||.++-...+ ...||+|..
T Consensus 1599 Vls~~-~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1599 VLSNG-GLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred eeccc-ceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 99887 34568899999999997764421 336998854
No 121
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.32 E-value=6.5e-07 Score=68.06 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred EEEEEEEccCCCCCCC-------------CCCCCcEEEEEE---CCCCeeEeeecCCCCCCCeeceEEEEEeCC------
Q 036193 25 VEITVLSAEDLRVDGR-------------SVKKKAFAVVKL---DPFNNRVTKVDAIGGSYPAWDEKLVMKLPM------ 82 (198)
Q Consensus 25 L~V~VisA~~L~~~~~-------------~~~~dpYv~v~l---~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~------ 82 (198)
|.|.|++|-+|+...+ .-..++||++++ ......+|+++.+. .-|++|.+|.|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArS-FcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARS-FCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhh-cCCCccceEEEecccEEEcCC
Confidence 4688999999973210 013689999995 23457789988875 999999999999861
Q ss_pred ----------CCceEEEEEEecccC---------CCCCceeEEEEEeCceeeccccCCCcceeEEEEE
Q 036193 83 ----------HVTFITLEVQCRTCS---------GSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLL 131 (198)
Q Consensus 83 ----------~~~~L~v~V~d~~~~---------~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L 131 (198)
+...+.|+||++.+. ..+|-+||.++||+.+|+....+ -..||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG----itGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG----ITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC----ccccccC
Confidence 136899999987621 23466899999999999976432 3357764
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=2.1e-07 Score=80.28 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=87.2
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEe--CC--CCceEEEEEEe
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKL--PM--HVTFITLEVQC 93 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v--~~--~~~~L~v~V~d 93 (198)
.+++..++..|++|+..++.+..|||+...+.+. .+.+|++..++ .||.|||+....- +. +...+.+.|.|
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~-lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNT-LNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccC-cCcceeccceecccccchhhhhhhheeecc
Confidence 5789999999999999999999999999999763 35778888765 9999999865443 32 34677777777
Q ss_pred cccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEE--cC--CC-CcceEEEEEEEEE
Q 036193 94 RTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLR--DA--RG-IRSGILNVSVRVK 149 (198)
Q Consensus 94 ~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~--~~--~g-~~~G~L~l~v~f~ 149 (198)
+. .+..+.++|+.++++..+..... ...-.++...|- .. .. ..+|+|.+++.|.
T Consensus 171 n~-~~~~~~sqGq~r~~lkKl~p~q~-k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~ 229 (362)
T KOG1013|consen 171 ND-KKTHNESQGQSRVSLKKLKPLQR-KSFNICLEKSLPSERADRDEDEERGAILISLAYS 229 (362)
T ss_pred Cc-ccccccCcccchhhhhccChhhc-chhhhhhhccCCcccccccchhhccceeeeeccC
Confidence 76 46678999999999987765432 111122222222 10 11 4567777776654
No 123
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.14 E-value=2.6e-06 Score=75.56 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=93.3
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEEC----CCCeeEeeecCCCCCCCeeceEEEEEeCCC------------Cc
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLD----PFNNRVTKVDAIGGSYPAWDEKLVMKLPMH------------VT 85 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~----~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~------------~~ 85 (198)
...|++.|++++++.........|-|+.+++. ..++.+|.+++++ ..|.++|.|.+.+... ..
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 45688899999888754434456889888872 2357888999876 9999999999999641 25
Q ss_pred eEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecC
Q 036193 86 FITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGS 152 (198)
Q Consensus 86 ~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~ 152 (198)
.+.|+||++...+.+|.++|.+++-|.-|..... .+-.|+|.+-.....|.|.+.|++-.+.
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~DGRK~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKDGRKAVGGKLEVKVRIRQPI 506 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccc-----hhhceeccccccccCCeeEEEEEEeccc
Confidence 8999999998333469999999999987765542 3447788763334578999999987653
No 124
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.8e-05 Score=73.84 Aligned_cols=103 Identities=20% Similarity=0.121 Sum_probs=79.7
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECC------CCeeEeeecCCCCCCCeeceEEEEEeCC----CCceEEEEEE
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP------FNNRVTKVDAIGGSYPAWDEKLVMKLPM----HVTFITLEVQ 92 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~------~~k~rT~v~~~~g~nP~WNE~f~f~v~~----~~~~L~v~V~ 92 (198)
..+.|+|+.|.+|+-.- .+--.|||.|.|-| ..|+.|++..++ -.|.+||+|.|-+.. +.-.|.|.|.
T Consensus 1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnn-WaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNN-WAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCC-cCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 45889999999998532 34458999999854 246778877654 899999999999963 3468999999
Q ss_pred ecccCCC-CCceeEEEEEeCceeeccccCCCcceeEEEEEEcC
Q 036193 93 CRTCSGS-GDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDA 134 (198)
Q Consensus 93 d~~~~~~-~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~ 134 (198)
|+- +. .|+.+|-+.++|.++...+. --.|++|-++
T Consensus 1203 DYC--FAReDRvvGl~VlqL~~va~kGS-----~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1203 DYC--FAREDRVVGLAVLQLRSVADKGS-----CACWVPLGRR 1238 (1283)
T ss_pred hhe--eecccceeeeeeeehhhHhhcCc-----eeEeeecccc
Confidence 887 55 48899999999999987642 2358888663
No 125
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.92 E-value=5.8e-06 Score=79.74 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=75.2
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCC-eeEeeecCCCCCCCeeceEEEEEeCC-CCceEEEEEEecccC
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFN-NRVTKVDAIGGSYPAWDEKLVMKLPM-HVTFITLEVQCRTCS 97 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~-k~rT~v~~~~g~nP~WNE~f~f~v~~-~~~~L~v~V~d~~~~ 97 (198)
+-....+|.|++|-+|...|..|.+|||+.+.+++.. .-+...+.++ +||++++-|.+.+.. ....|.++|||.+ .
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~t-lnPVfgkmfel~~~lp~ek~l~v~vyd~D-~ 687 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNT-LNPVFGKMFELECLLPFEKDLIVEVYDHD-L 687 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCC-CCcHHHHHHHhhcccchhhcceeEEEEee-c
Confidence 4456788999999999999999999999999998631 2344566665 999999999888863 4678999999999 5
Q ss_pred CCCCceeEEEEEeCc
Q 036193 98 GSGDRLVGRATLLVS 112 (198)
Q Consensus 98 ~~~d~~lG~~~vpl~ 112 (198)
..+|+.||+.++.|.
T Consensus 688 ~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLE 702 (1105)
T ss_pred ccccchhhceehhhh
Confidence 667999999999986
No 126
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=2.5e-05 Score=67.66 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=70.9
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEE
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQ 92 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~ 92 (198)
....-|.|+++.+..|...+..+-+||||..++.++ .+.+|++.++. .||++|+.|.|.+.+. .-.+.|.|+
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t-~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKT-LNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhcc-CCccccccccccCCccchhcceEEEeec
Confidence 445678999999999999999999999999999753 36788888886 9999999999999754 458889999
Q ss_pred ecccCCCCCceeEEEE
Q 036193 93 CRTCSGSGDRLVGRAT 108 (198)
Q Consensus 93 d~~~~~~~d~~lG~~~ 108 (198)
|++ .....+++|-..
T Consensus 309 d~~-~G~s~d~~GG~~ 323 (362)
T KOG1013|consen 309 DYD-IGKSNDSIGGSM 323 (362)
T ss_pred ccC-CCcCccCCCccc
Confidence 988 333577777543
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.81 E-value=3.5e-05 Score=72.79 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=70.4
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccCCCC
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCSGSG 100 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~~~~ 100 (198)
.|...+++++|+ + + + .|+|..+-.-|.+.+||.+.+++ .||+|||...|.+-+. ....+|.|||.+ ++..
T Consensus 53 ~~~~~~~~~~~~-~---~-~--~~~~~~~~~~g~~~f~t~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ 123 (644)
T PLN02964 53 SGIALLTLVGAE-M---K-F--KDKWLACVSFGEQTFRTETSDST-DKPVWNSEKKLLLEKNGPHLARISVFETN-RLSK 123 (644)
T ss_pred cCeEEEEeehhh-h---c-c--CCcEEEEEEecceeeeecccccc-CCcccchhhceEeccCCcceEEEEEEecC-CCCH
Confidence 488899999998 2 2 2 48875544445689999999886 9999999999999643 356799999998 6778
Q ss_pred CceeEEEEEeCceeeccc
Q 036193 101 DRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~ 118 (198)
++++|.+.+++.++....
T Consensus 124 n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHhhhheeecHhhccHHH
Confidence 999999999999888654
No 128
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.77 E-value=4.1e-05 Score=54.71 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCC-CCCCCCCcEEEE--EECCCCeeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCC
Q 036193 26 EITVLSAEDLRVD-GRSVKKKAFAVV--KLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGS 99 (198)
Q Consensus 26 ~V~VisA~~L~~~-~~~~~~dpYv~v--~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~ 99 (198)
=|+|+.++||... .....+..|++= .+...-.+||.+.+ +..||+++|+|.|.+..+ .-.|.|.|+.. +-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeecc---CC
Confidence 3789999999743 233345667653 34443456776555 459999999999999743 46888999883 56
Q ss_pred CCceeEEEEEeCceeecc
Q 036193 100 GDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 100 ~d~~lG~~~vpl~~l~~~ 117 (198)
+.+.||++.+.++++-..
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 789999999999876543
No 129
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.56 E-value=0.0059 Score=46.46 Aligned_cols=121 Identities=13% Similarity=0.218 Sum_probs=80.0
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCC--eeEeeecCCCCCCCeeceEEEEEeCC---------CCceEEEEE
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFN--NRVTKVDAIGGSYPAWDEKLVMKLPM---------HVTFITLEV 91 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~--k~rT~v~~~~g~nP~WNE~f~f~v~~---------~~~~L~v~V 91 (198)
-.+.|+|....+++. .....||.+..+... ..+|.........-.|||.|.+.+.. +...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 457888999998875 224555666554432 34555444444788999999998841 135788888
Q ss_pred EecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecC
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGS 152 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~ 152 (198)
+... .......||++.|.|+++.... .......|.|... .+....|++++.+....
T Consensus 83 ~~~~-~~~~k~~lG~~~inLaey~~~~---~~~~~~~~~l~~~-~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVD-GSGKKKVLGKVSINLAEYANED---EEPITVRLLLKKC-KKSNATLSISISLSELR 138 (143)
T ss_pred EEec-CCCccceEEEEEEEHHHhhCcC---CCcEEEEEeCccC-CCCCcEEEEEEEEEECc
Confidence 8764 1222369999999999998753 1124556766653 35567888888887654
No 130
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.38 E-value=4.8e-05 Score=73.61 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=81.2
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC-----C-----CCceEEEEEEec
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP-----M-----HVTFITLEVQCR 94 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~-----~-----~~~~L~v~V~d~ 94 (198)
+++.|-+|+.|...+.-+-+|||+.|.+.+ +...|-+..++ +||.||++..|.-- . .--.+.|+|||.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~~t-l~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVPGT-LNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeecCc-CCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 455566788887767777899999999886 56788888765 99999999988641 1 125888999999
Q ss_pred ccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEE
Q 036193 95 TCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSV 146 (198)
Q Consensus 95 ~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v 146 (198)
+ +...++++|.......-... +....|+++.+ ++...|.+.++.
T Consensus 286 d-r~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 286 D-RSGINEFKGRKKQRPYVMVQ------CPALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred h-hhchHHhhcccccceEEEec------CCccceEEeec-ccccccchhHHH
Confidence 8 67789999987665543332 12456888876 345566655553
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.35 E-value=0.0019 Score=50.92 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=58.1
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCe-----eEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEe
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNN-----RVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQC 93 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k-----~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d 93 (198)
+.++|+|++|+++.... ..|-||.+++-.+.+ ..|+-.. ..++.|||-+.|++. +..+.|.|+||+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 56899999999987542 368999998732211 2333222 278999999999886 336899999998
Q ss_pred cccCCC---CCceeEEEEEeCce
Q 036193 94 RTCSGS---GDRLVGRATLLVSD 113 (198)
Q Consensus 94 ~~~~~~---~d~~lG~~~vpl~~ 113 (198)
...... ....||.+.++|-+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 651111 12458888777753
No 132
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0002 Score=63.01 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=83.7
Q ss_pred cCcEEEEEEEEccCCCCC-CCCCCCCcEEEEEECCC----CeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecc
Q 036193 21 HSRTVEITVLSAEDLRVD-GRSVKKKAFAVVKLDPF----NNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRT 95 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~-~~~~~~dpYv~v~l~~~----~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~ 95 (198)
..+.|+|.|+.|++|... .....++|||+|++-++ .+.+|+...++ .+|..-+...|.-.+....|.+.||..-
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT-~~plyqq~l~f~~sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKT-LDPLYQQQLSFDQSPPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccccc-CchhhhhhhhhccCCCccEEEEEEeccc
Confidence 368899999999999643 22236899999999542 36788888875 6666666789988888899999999543
Q ss_pred cCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCC
Q 036193 96 CSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDAR 135 (198)
Q Consensus 96 ~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~ 135 (198)
.+...+.|+|.+.+-+.++-... .+...||.|...+
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred cccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 25667889999999998886543 2355799998754
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.22 E-value=0.0025 Score=50.96 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=49.1
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEEC-CCC----eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEe
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLD-PFN----NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQC 93 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~~----k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d 93 (198)
..++|+|+++.+|... ....+.||.+.+- |.. ...|+...- ..++.|||.+.|++. +..+.|.|.||+
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 5689999999999751 2346788888773 221 224443332 378999999999886 336899999997
Q ss_pred cc
Q 036193 94 RT 95 (198)
Q Consensus 94 ~~ 95 (198)
..
T Consensus 85 ~~ 86 (173)
T cd08693 85 VS 86 (173)
T ss_pred ec
Confidence 54
No 134
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.08 E-value=0.027 Score=49.65 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=90.6
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC--------CCCceEEEEEEeccc
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP--------MHVTFITLEVQCRTC 96 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~--------~~~~~L~v~V~d~~~ 96 (198)
+.|.|+.+++.... -+...++..++++. ...|-.... ...|.||..+.+.++ .+...|.++.|.-+.
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~-~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGE-SLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCc-eeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 56889999999753 24678899999985 677764443 489999999999997 235788999886652
Q ss_pred CCCCCceeEEEEEeCcee---eccccCCCcceeEEEEEEcCCC---CcceEEEEEEEEEecCCC
Q 036193 97 SGSGDRLVGRATLLVSDF---IGGYVPENHLNFLSYLLRDARG---IRSGILNVSVRVKEGSGL 154 (198)
Q Consensus 97 ~~~~d~~lG~~~vpl~~l---~~~~~~~~~~~~~~~~L~~~~g---~~~G~L~l~v~f~~~~~~ 154 (198)
.....+.||.+.++|..+ ..+ .......||+|..-++ +.+-+|.+.+.+......
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~---~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~ 137 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEK---NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP 137 (340)
T ss_pred CCCcceeccEEEEEcccccccccc---ccccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence 244577999999999988 333 1235678999998633 346689999999887653
No 135
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.01 E-value=0.018 Score=45.24 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=86.3
Q ss_pred CcCcEEEEEEEEccCCCCC--CCCCCCCcEEEEEEC-CCCeeEeeecCCCCCCCeeceEEEEEeCCC-------------
Q 036193 20 SHSRTVEITVLSAEDLRVD--GRSVKKKAFAVVKLD-PFNNRVTKVDAIGGSYPAWDEKLVMKLPMH------------- 83 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~--~~~~~~dpYv~v~l~-~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~------------- 83 (198)
+..+.|.++|+.++=.-.. +..+..+.-..+.+. ++|+++|+.+... -+|.++|.|.|++...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~-~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCA-CEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccc-cCCCCCCcEEEEecccccccccchhHhhc
Confidence 5578899999998765431 111344444444442 3479999988765 9999999999999632
Q ss_pred -CceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC---CcceEEEEEEEEEecC
Q 036193 84 -VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG---IRSGILNVSVRVKEGS 152 (198)
Q Consensus 84 -~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g---~~~G~L~l~v~f~~~~ 152 (198)
...|++.|.-.+ ......++|+..+.=..++.... . ......+|..... -+.|.|++++.+.|..
T Consensus 85 ~~~pihivli~~d-~~~~~~Lv~s~~ldWR~vL~s~~--~-~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTD-PSGETTLVGSHFLDWRKVLCSGN--G-STSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEec-CCCceEeeeeceehHHHHhccCC--C-ccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 246777777655 23344788887777666665431 1 1245677776543 3789999999998875
No 136
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.87 E-value=0.015 Score=42.91 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=55.4
Q ss_pred EEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCC--------CceEEEEEEecccCCCCCceeEEEEEeCceeeccc
Q 036193 47 FAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMH--------VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 47 Yv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~--------~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~ 118 (198)
||.+.+-.-..+.|.+.. |.||..|-+-.|.|... ...+.||++.-- ...-+.||.+.+++..++...
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~--g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL--GSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec--cCCeEEEEEEEeechhhhcCC
Confidence 677777554577888886 59999999988888643 478999997543 334568999999999999653
Q ss_pred cCCCcceeEEEEEEcCCCCcceEEEEEEEEEe
Q 036193 119 VPENHLNFLSYLLRDARGIRSGILNVSVRVKE 150 (198)
Q Consensus 119 ~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~ 150 (198)
. . .......|...+|..-|.|.+.+++.-
T Consensus 78 ~-~--~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 78 G-E--RIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp S-----EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred C-c--eEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 1 1 244566777777888899999998753
No 137
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.85 E-value=0.0088 Score=46.57 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=58.8
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEEC-CCC----eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEe
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLD-PFN----NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQC 93 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~~----k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d 93 (198)
..++|++.+..++...+ ....+-||.+++- +.. ...|..... ..++.|||.+.|++. +.++.|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 45788888888876411 2346788888773 221 223333322 378999999999975 336899999998
Q ss_pred cccCCC--CCceeEEEEEeCce
Q 036193 94 RTCSGS--GDRLVGRATLLVSD 113 (198)
Q Consensus 94 ~~~~~~--~d~~lG~~~vpl~~ 113 (198)
.. ... .+..||++.++|-+
T Consensus 86 ~~-~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VS-EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred Ee-cCCCCcceEEEEEeEEeEc
Confidence 76 122 35789999888864
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.82 E-value=0.0078 Score=47.84 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=61.2
Q ss_pred cCcEEEEEEEEccCCCCCCCCCCCCcEEEEEEC-CCC----eeEeeecC--C-CCCCCeeceEEEEEeC----CCCceEE
Q 036193 21 HSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLD-PFN----NRVTKVDA--I-GGSYPAWDEKLVMKLP----MHVTFIT 88 (198)
Q Consensus 21 ~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~~----k~rT~v~~--~-~g~nP~WNE~f~f~v~----~~~~~L~ 88 (198)
....+.|+|.+++++.........|-||.+++- +.+ ...|+... + -...+.|||.+.|++. +.++.|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 456689999999999876544457889999873 221 22343211 1 1246779999999985 3368999
Q ss_pred EEEEecccCCC---------CCceeEEEEEeCce
Q 036193 89 LEVQCRTCSGS---------GDRLVGRATLLVSD 113 (198)
Q Consensus 89 v~V~d~~~~~~---------~d~~lG~~~vpl~~ 113 (198)
|.||+.. ... .+..||++.++|-+
T Consensus 86 itl~~~~-~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTT-SSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEe-cCCccccccccccceEEEEEeEeeEc
Confidence 9999865 121 24578887777753
No 139
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.55 E-value=0.037 Score=44.48 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=46.6
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEEC-CCC---eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEec
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLD-PFN---NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQCR 94 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~~---k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d~ 94 (198)
..++|+|+++..+.. +.......||.+.+- +.. ..+|....- +.++.|||-+.|++. +..+.|.|.||+.
T Consensus 10 ~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence 468899999875432 223335677777663 221 224544433 478999999999986 3368999999986
Q ss_pred c
Q 036193 95 T 95 (198)
Q Consensus 95 ~ 95 (198)
.
T Consensus 88 ~ 88 (178)
T cd08399 88 K 88 (178)
T ss_pred e
Confidence 4
No 140
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.48 E-value=0.028 Score=40.38 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=57.2
Q ss_pred CCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCC
Q 036193 43 KKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPEN 122 (198)
Q Consensus 43 ~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~ 122 (198)
..+..+++.++......|.-... .+..||++|.|.++- ...|.|.||-++ . ..+-|...+-|.+...+
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~--s~q~WDQ~Fti~LdR-sRELEI~VywrD--~--RslCav~~lrLEd~~~~----- 75 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK--SNQAWDQSFTLELER-SRELEIAVYWRD--W--RSLCAVKFLKLEDERHE----- 75 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc--ccccccceeEEEeec-ccEEEEEEEEec--c--hhhhhheeeEhhhhccc-----
Confidence 36888999998755566654433 688999999999986 488999999776 2 23556666666653211
Q ss_pred cceeEEEEEEcCCCCcceEEEEEEEE
Q 036193 123 HLNFLSYLLRDARGIRSGILNVSVRV 148 (198)
Q Consensus 123 ~~~~~~~~L~~~~g~~~G~L~l~v~f 148 (198)
...+| .++|.|...+.|
T Consensus 76 ----~~~~l-----epqg~l~~ev~f 92 (98)
T cd08687 76 ----VQLDM-----EPQLCLVAELTF 92 (98)
T ss_pred ----ceecc-----ccccEEEEEEEe
Confidence 12222 456777777776
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.25 E-value=0.009 Score=51.97 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=81.1
Q ss_pred CCcCcEEEEEEEEccCCCCC--CCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEeccc
Q 036193 19 SSHSRTVEITVLSAEDLRVD--GRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTC 96 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~--~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~ 96 (198)
+...|.|-+.++.+++|+.. ...-..+-||++..+...+.||.+... +.--.|.|+|..++-. ...+.+-||.+.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccC-CCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 34568999999999999853 334567999999999877888876654 4778899999998864 3778888888772
Q ss_pred CCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecCC
Q 036193 97 SGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGSG 153 (198)
Q Consensus 97 ~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~~ 153 (198)
-.+.++.-...+.+..+.... ++ +...+.| .++|.+-+.+.|....+
T Consensus 125 -q~RHKLC~~g~l~~~~v~rqs-pd---~~~Al~l-----ePrgq~~~r~~~~Dp~a 171 (442)
T KOG1452|consen 125 -QRRHKLCHLGLLEAFVVDRQS-PD---RVVALYL-----EPRGQPPLRLPLADPEA 171 (442)
T ss_pred -hhhccccccchhhhhhhhhcC-Cc---ceeeeec-----ccCCCCceecccCChHH
Confidence 344554322233333333222 11 2222222 46788888888776543
No 142
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.24 E-value=0.021 Score=45.00 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCCcEEEEEECC-CC----eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEecccCCCCCceeEEEEEeCc
Q 036193 42 VKKKAFAVVKLDP-FN----NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQCRTCSGSGDRLVGRATLLVS 112 (198)
Q Consensus 42 ~~~dpYv~v~l~~-~~----k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~ 112 (198)
...|-||.+++-. .. ...|....- +..+.|||-+.|++. +.++.|.|+||+.. .......||.++++|-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~-~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS-GTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEec-CCCCceEEEEEEEeeE
Confidence 3578899998732 21 124433332 477889999999986 33689999999976 1224568999988885
Q ss_pred e
Q 036193 113 D 113 (198)
Q Consensus 113 ~ 113 (198)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 3
No 143
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.92 E-value=0.073 Score=43.41 Aligned_cols=55 Identities=9% Similarity=0.220 Sum_probs=40.4
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCCC---CceeEEEEEeCc
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGSG---DRLVGRATLLVS 112 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~~---d~~lG~~~vpl~ 112 (198)
..+|.+.... .+|.|||++.+.|+.+ +..|.|++++......+ ...+|-+-+||-
T Consensus 54 e~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 5677765543 8999999999999843 57999999875311112 357999999985
No 144
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.84 E-value=0.063 Score=41.15 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=43.3
Q ss_pred CcEEEEEEC-CCC----ee-EeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEecccCCCCC----ceeEEEEEe
Q 036193 45 KAFAVVKLD-PFN----NR-VTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQCRTCSGSGD----RLVGRATLL 110 (198)
Q Consensus 45 dpYv~v~l~-~~~----k~-rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d~~~~~~~d----~~lG~~~vp 110 (198)
+.||.+++- +.+ .. .|+...-...++.|||.+.|++. +.++.|.|.||... ....+ ..||++.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~-~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVD-SKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEE-CSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEec-CCCccccceeEEEEEEEE
Confidence 456666662 211 12 44433221269999999999985 44689999999876 22333 689999999
Q ss_pred Ccee
Q 036193 111 VSDF 114 (198)
Q Consensus 111 l~~l 114 (198)
|-+.
T Consensus 82 lFd~ 85 (142)
T PF00792_consen 82 LFDY 85 (142)
T ss_dssp SB-T
T ss_pred eECC
Confidence 8644
No 145
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.81 E-value=0.046 Score=43.74 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=33.8
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCCCC--ceeEEEEEeCce
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGSGD--RLVGRATLLVSD 113 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~~d--~~lG~~~vpl~~ 113 (198)
.+.|.+.... .+|.|+|+|.+.++.. ...|.|++++......++ ..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~-k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHN-KNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecC-CCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4566666554 8999999999999843 579999999865112222 689999999986
No 146
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.61 E-value=0.032 Score=51.65 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=63.3
Q ss_pred EEEccCCCCCCCCCCCCcEEEEEEC--CC---CeeEeeecCCCCCCCeeceEEEEEeC-----CCCceEEEEEEecccCC
Q 036193 29 VLSAEDLRVDGRSVKKKAFAVVKLD--PF---NNRVTKVDAIGGSYPAWDEKLVMKLP-----MHVTFITLEVQCRTCSG 98 (198)
Q Consensus 29 VisA~~L~~~~~~~~~dpYv~v~l~--~~---~k~rT~v~~~~g~nP~WNE~f~f~v~-----~~~~~L~v~V~d~~~~~ 98 (198)
.+.|++|...+.++++|||..+.-- .. ...+|.+.+++ +||.|-+ |.+.+. .....+.+++||.+ ..
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~-l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~-~~ 218 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNT-LNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD-SN 218 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccC-CCCcccc-cccchhhhcccCCCCceEEEEeccC-CC
Confidence 4457888888999999999877642 21 24688888876 9999987 444443 22478889999988 34
Q ss_pred CCCceeEEEEEeCceeec
Q 036193 99 SGDRLVGRATLLVSDFIG 116 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~ 116 (198)
..+++||++..++.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 456899999999988863
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.00 E-value=0.083 Score=42.88 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=40.5
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCCCC-ceeEEEEEeCc
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGSGD-RLVGRATLLVS 112 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~~d-~~lG~~~vpl~ 112 (198)
.++|.|.... .+|.|||++.+.|+.+ ...|.|++++.-....++ ..+|-+-+||-
T Consensus 54 e~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5677776654 8999999999999853 579999998754111122 67999999984
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.23 E-value=0.31 Score=35.15 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=46.2
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEC-CCC----eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEEEecc
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLD-PFN----NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEVQCRT 95 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~~----k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V~d~~ 95 (198)
+.+++..++++.........+-||.+++- +.. ...|... .....+.|||-+.|++. +..+.|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 66777787777654332235889999873 221 2234333 23466999999999886 33689999999754
No 149
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=94.19 E-value=0.27 Score=38.97 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCCcEEEEEECCCCeeEeeecCC-CCCCCeeceEEEEEeCCCCceEEEEEEecccCCCCCceeEEEEEeCceeec
Q 036193 42 VKKKAFAVVKLDPFNNRVTKVDAI-GGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRLVGRATLLVSDFIG 116 (198)
Q Consensus 42 ~~~dpYv~v~l~~~~k~rT~v~~~-~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~ 116 (198)
.+..-|+++.+++....+|+...- ....-.+||.|.+.+..--..|.++||... ..++.+|+++.+|+.....
T Consensus 35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~--~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKS--GLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEcc--CccceEEEEEEeeCCCCcc
Confidence 345779999999866667764432 235556889999999754588999999887 5789999999999875543
No 150
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.03 E-value=0.41 Score=38.14 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=38.0
Q ss_pred eecCCCCCCCeeceEEEEEeCC---CCceEEEEEEecccCC----CCCceeEEEEEeCce
Q 036193 61 KVDAIGGSYPAWDEKLVMKLPM---HVTFITLEVQCRTCSG----SGDRLVGRATLLVSD 113 (198)
Q Consensus 61 ~v~~~~g~nP~WNE~f~f~v~~---~~~~L~v~V~d~~~~~----~~d~~lG~~~vpl~~ 113 (198)
.+.... .+|.|+|+|.+.++. ....|.|++++..... .....+|.+-+||-+
T Consensus 57 sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 57 SVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444 899999999999974 3579999999754111 235679999999875
No 151
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.89 E-value=0.48 Score=46.39 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCCCC-CceeEEEEEeCceeeccccCCC
Q 036193 44 KKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSGSG-DRLVGRATLLVSDFIGGYVPEN 122 (198)
Q Consensus 44 ~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~-d~~lG~~~vpl~~l~~~~~~~~ 122 (198)
+++|+.+.+......+|+...+--.+|.|++.|..........+.+.+.+.+ ..+ ..++|.++++.-.+..+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~--~~G~s~~w~~v~~s~~~~~~~~~--- 212 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGAR--VPGWSKRWGRVKISFLQYCSGHR--- 212 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCc--cccceeEEEEeccchhhhhcccc---
Confidence 4899999997655567776665458999999998888877789999998877 555 8899999999998887642
Q ss_pred cceeEEEEEEcCCCCc---ceEEEEEEEEEecC
Q 036193 123 HLNFLSYLLRDARGIR---SGILNVSVRVKEGS 152 (198)
Q Consensus 123 ~~~~~~~~L~~~~g~~---~G~L~l~v~f~~~~ 152 (198)
...++.+...++++ .-.+.+.+.|.+..
T Consensus 213 --~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 213 --IGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred --ccceeeeeccCCccccCCcccceEEeeEeec
Confidence 34588888766543 22466666666644
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.86 E-value=0.72 Score=37.11 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=39.5
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccCCC-----CCceeEEEEEeCc
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCSGS-----GDRLVGRATLLVS 112 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~~~-----~d~~lG~~~vpl~ 112 (198)
...|.|...+ .+|.|+|+|.+.++.. ...|.|+.++...... ....+|-+-+||-
T Consensus 55 ~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 4567766654 9999999999999843 5789999997541111 1356888888875
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.48 E-value=1.4 Score=35.71 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=40.4
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC---CceEEEEEEecccC--C------CCCceeEEEEEeCce
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH---VTFITLEVQCRTCS--G------SGDRLVGRATLLVSD 113 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~---~~~L~v~V~d~~~~--~------~~d~~lG~~~vpl~~ 113 (198)
...|.|...+ .+|.|+|++.+.++.. ...|.|+.++.... . .....+|-+-+||-.
T Consensus 57 ~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567777665 9999999999999843 56899999975310 0 113568888888864
No 154
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=86.41 E-value=16 Score=33.34 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=61.3
Q ss_pred CCCCcEEEEEECCCCeeEee--ecCCCCCCC-e-eceEEEEEeCC---------C-----CceEEEEEEeccc-C---C-
Q 036193 42 VKKKAFAVVKLDPFNNRVTK--VDAIGGSYP-A-WDEKLVMKLPM---------H-----VTFITLEVQCRTC-S---G- 98 (198)
Q Consensus 42 ~~~dpYv~v~l~~~~k~rT~--v~~~~g~nP-~-WNE~f~f~v~~---------~-----~~~L~v~V~d~~~-~---~- 98 (198)
.....||+|+|.+-..+++. .......++ . =+-.-.|.++. . ...|.|.||.-.. . +
T Consensus 34 ssspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 34 SSSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence 34577999999874333332 222222222 1 12234566641 1 1579999996330 0 1
Q ss_pred CCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC----CcceEEEEEEEEEecC
Q 036193 99 SGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG----IRSGILNVSVRVKEGS 152 (198)
Q Consensus 99 ~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g----~~~G~L~l~v~f~~~~ 152 (198)
...++||.++|||+---.... -..+...|..|-+.+. ....+|||.|+.++++
T Consensus 114 ~~~klLG~v~vpldl~~ae~k-p~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 114 NSGKLLGKVRVPLDLKWAEGK-PVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred ccceEEEEEEEEeccccccCC-eeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 356899999999972222111 1123445777766421 2357999999887753
No 155
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=85.76 E-value=14 Score=33.12 Aligned_cols=117 Identities=8% Similarity=0.035 Sum_probs=74.5
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCC-eeceEEEEEeCCCCceEEEEEEecccCCCCCce
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYP-AWDEKLVMKLPMHVTFITLEVQCRTCSGSGDRL 103 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP-~WNE~f~f~v~~~~~~L~v~V~d~~~~~~~d~~ 103 (198)
|-|.|..-.++. -...-|+.++.+. ..++|..+.-+-.+- .-.|...+.+..-...|.+.+|-.. ..+..-
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKk--Lvkk~h 131 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTK--LTKKVH 131 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecc--ccceeE
Confidence 444554444442 2356789999875 466773332211222 2334555555544689999999877 778889
Q ss_pred eEEEEEeCce-eeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecCCC
Q 036193 104 VGRATLLVSD-FIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGSGL 154 (198)
Q Consensus 104 lG~~~vpl~~-l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~~~ 154 (198)
||.+.+.+.. ++.+.- ....||.+. ++|+..++|.|++.=....|.
T Consensus 132 IgdI~InIn~dIIdk~F----PKnkWy~c~-kDGq~~cRIqLSFhKL~kya~ 178 (508)
T PTZ00447 132 IGQIKIDINASVISKSF----PKNEWFVCF-KDGQEICKVQMSFYKIQKYAC 178 (508)
T ss_pred EEEEEecccHHHHhccC----CccceEEEe-cCCceeeeEEEEehhhhhccC
Confidence 9999999984 444433 345799985 578889999998765554443
No 156
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=84.50 E-value=2.3 Score=39.62 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=46.3
Q ss_pred eeEeeecCCCCCCCeeceEEEEEeCCC-CceEEEEEEecccC---CCCCceeEEEEEeCceeeccc
Q 036193 57 NRVTKVDAIGGSYPAWDEKLVMKLPMH-VTFITLEVQCRTCS---GSGDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 57 k~rT~v~~~~g~nP~WNE~f~f~v~~~-~~~L~v~V~d~~~~---~~~d~~lG~~~vpl~~l~~~~ 118 (198)
..||.++.+. +||.|-++|.+.-.-+ .+.|.|++++.+.. ....+|+|++..-+..++...
T Consensus 42 ~~rte~i~~~-~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 42 VGRTEVIRNV-LNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred ccceeeeecc-CCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 3478888776 9999999988776533 57899999987621 234779999999998887543
No 157
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=81.82 E-value=5.9 Score=29.06 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=45.3
Q ss_pred ceEEEEEEecccC--CCCCceeEEEEEeCceeeccc---------cCCCcceeEEEEEEcCCCCcceEEEEEEEEEe
Q 036193 85 TFITLEVQCRTCS--GSGDRLVGRATLLVSDFIGGY---------VPENHLNFLSYLLRDARGIRSGILNVSVRVKE 150 (198)
Q Consensus 85 ~~L~v~V~d~~~~--~~~d~~lG~~~vpl~~l~~~~---------~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~ 150 (198)
..|.+.++...+. .....+||.+.|++.+....- .+........|+|.++.|...|+|.+.+++..
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC 105 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence 5667766544310 234668999999999876321 11222344689999998999999999999864
No 158
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=81.62 E-value=24 Score=27.74 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=54.5
Q ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEECC---------CC-eeEeeecCCC----CCCCeeceEEEEEeCCC---C-ce
Q 036193 25 VEITVLSAEDLRVDGRSVKKKAFAVVKLDP---------FN-NRVTKVDAIG----GSYPAWDEKLVMKLPMH---V-TF 86 (198)
Q Consensus 25 L~V~VisA~~L~~~~~~~~~dpYv~v~l~~---------~~-k~rT~v~~~~----g~nP~WNE~f~f~v~~~---~-~~ 86 (198)
+.=.|.+|++.. ..+.||+..+.- .. ...|.+.+.. +..-.||.-|.+.+... . -.
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344578888664 246788887732 23 4677766532 35677999888877522 2 58
Q ss_pred EEEEEEecccCCCCCceeEEEEEeCc
Q 036193 87 ITLEVQCRTCSGSGDRLVGRATLLVS 112 (198)
Q Consensus 87 L~v~V~d~~~~~~~d~~lG~~~vpl~ 112 (198)
|.|+||..| ...++.+.|...+.|.
T Consensus 78 L~l~V~~~D-~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLD-SWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEc-ccCCeEEeEEeEEEeC
Confidence 999999988 5667888887655554
No 159
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=81.40 E-value=6.3 Score=30.75 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=50.1
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEEC-CC-----CeeEeeecCC-CCCCCeeceEEEEEeC----CCCceEEEEE
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLD-PF-----NNRVTKVDAI-GGSYPAWDEKLVMKLP----MHVTFITLEV 91 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~-~~-----~k~rT~v~~~-~g~nP~WNE~f~f~v~----~~~~~L~v~V 91 (198)
..|.|.|-+.. |++.. .-.|||+.|++- .+ ..+.|.+... .+..-.||....++.+ +.+..+.||+
T Consensus 13 t~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~ 89 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF 89 (147)
T ss_dssp -EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred ceEEEEEEEEE-ECChH--HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence 44667766655 76532 236999999983 21 2456665522 2345557755555544 2367899999
Q ss_pred EecccCCCCCceeEEEEEeCceeecc
Q 036193 92 QCRTCSGSGDRLVGRATLLVSDFIGG 117 (198)
Q Consensus 92 ~d~~~~~~~d~~lG~~~vpl~~l~~~ 117 (198)
.++......-...+++-++++++..+
T Consensus 90 kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 90 KHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EeeeccceeeeeeEEEEEEhhhccCC
Confidence 99872122334588999999887755
No 160
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=78.05 E-value=23 Score=34.22 Aligned_cols=117 Identities=11% Similarity=0.182 Sum_probs=76.8
Q ss_pred cEEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecccCC--CC
Q 036193 23 RTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRTCSG--SG 100 (198)
Q Consensus 23 ~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~~~~--~~ 100 (198)
-.|+|.|...++|+....+ .=.||+..++| .|..|.-.. ...|.|.-.=.|.-......+.+.+|.+.... ..
T Consensus 341 ~smevvvmevqglksvapn--rivyctmeveg-eklqtdqae--askp~wgtqgdfstthplpvvkvklftestgvlale 415 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAPN--RIVYCTMEVEG-EKLQTDQAE--ASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALE 415 (1218)
T ss_pred eeeeEEEeeeccccccCCC--eeEEEEEEecc-cccccchhh--hcCCCCCcCCCcccCCCCceeEEEEEeecceeEEee
Confidence 4578999999999864432 35799999998 477775443 37999998877777655567888888765111 35
Q ss_pred CceeEEEEEeCceeeccccCCCcceeEEEEEEcCCC--CcceEEEEEEEEEec
Q 036193 101 DRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARG--IRSGILNVSVRVKEG 151 (198)
Q Consensus 101 d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g--~~~G~L~l~v~f~~~ 151 (198)
|+-||.+-+-... ......-|+.+.-++. ...-+|.+.++...+
T Consensus 416 dkelgrvil~ptp-------ns~ks~ewh~mtvpknsqdqdlkiklavrmdkp 461 (1218)
T KOG3543|consen 416 DKELGRVILQPTP-------NSAKSPEWHTMTVPKNSQDQDLKIKLAVRMDKP 461 (1218)
T ss_pred chhhCeEEEecCC-------CCcCCccceeeecCCCCcCccceEEEEEeccCC
Confidence 8889987665431 1112334777766543 233466676666543
No 161
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.99 E-value=4.1 Score=39.10 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCCceEEEEEEecc
Q 036193 43 KKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHVTFITLEVQCRT 95 (198)
Q Consensus 43 ~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~~~L~v~V~d~~ 95 (198)
..++|+.|.++-.+...+.+.+. ..+|.|||+|.+.+.. ...+.|.|+...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~~-~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVVA-GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCC-CCCchhhhheeeeeec-CCceEEEEEecC
Confidence 46899988886543334444444 4999999999999765 467888888754
No 162
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=63.67 E-value=30 Score=34.49 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=42.3
Q ss_pred CcEEEEEEEEccCCCCCCCCCCCCcEEEEEEC---CCC---eeEeeecCCCCCCCeeceEEEEEeC----CCCceEEEEE
Q 036193 22 SRTVEITVLSAEDLRVDGRSVKKKAFAVVKLD---PFN---NRVTKVDAIGGSYPAWDEKLVMKLP----MHVTFITLEV 91 (198)
Q Consensus 22 ~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~---~~~---k~rT~v~~~~g~nP~WNE~f~f~v~----~~~~~L~v~V 91 (198)
.+.++|+++++.++.. ..+.|-+|.|+.+ |.. +.+.....++..+|.||+.+.|++. +..+.|-|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 3678999999887643 2344555555542 221 1111222233589999999999885 2346777777
Q ss_pred Eec
Q 036193 92 QCR 94 (198)
Q Consensus 92 ~d~ 94 (198)
|.-
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 753
No 163
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=53.78 E-value=1e+02 Score=23.84 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=59.6
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeC-------------CCCceEEEE
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLP-------------MHVTFITLE 90 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~-------------~~~~~L~v~ 90 (198)
.|+|.-+++=|.-- ..+.|.|..|.+-| +..+|+...-- .=-.++|+|+|.-- .+...+.+|
T Consensus 3 eL~i~aVTCPGv~L---~~~~~vyL~v~~lg-~~~~T~~~ppv-FPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iE 77 (140)
T PF14909_consen 3 ELEIHAVTCPGVWL---CDKGDVYLSVCILG-QYKRTRCLPPV-FPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIE 77 (140)
T ss_pred EEEEEEEecCCeEe---CCCCCEEEEEEEcc-cEeecccCCCc-CCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEE
Confidence 46777777766532 23579999999987 57788744321 22247999999752 125788899
Q ss_pred EEecccCCCCCceeEEEEEeCceeec
Q 036193 91 VQCRTCSGSGDRLVGRATLLVSDFIG 116 (198)
Q Consensus 91 V~d~~~~~~~d~~lG~~~vpl~~l~~ 116 (198)
+.... .-..+.|+...-.+.+++-
T Consensus 78 LiQl~--~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 78 LIQLV--PPAGEILAYYEENTRDFLF 101 (140)
T ss_pred EEEEe--CCCCcEEEEEeccccceEc
Confidence 98765 3347788888888888774
No 164
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=53.19 E-value=9.9 Score=37.76 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred CcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECC----CCeeEeeecCCCCCCCeeceEEEEEeCC
Q 036193 20 SHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDP----FNNRVTKVDAIGGSYPAWDEKLVMKLPM 82 (198)
Q Consensus 20 ~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~----~~k~rT~v~~~~g~nP~WNE~f~f~v~~ 82 (198)
...+.+++.+.+|..|+.. ..-||+..++. ..+.+|++..++ ..|.||+.|.+++-.
T Consensus 756 l~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT-~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADT-AEPQWNPEKHVPVIE 816 (1112)
T ss_pred ccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecc-cCCCCChhcccchhh
Confidence 4568999999999999742 46677776643 247889999886 999999999998853
No 165
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=51.17 E-value=1.8e+02 Score=25.84 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=60.4
Q ss_pred cccCCCCCCcCcEEEEEEEEccCCCCC------CCCCCCCcEEEEEECCCCeeEeeecCCCCCCCee--ceEEEEEeCCC
Q 036193 12 LHMENSCSSHSRTVEITVLSAEDLRVD------GRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAW--DEKLVMKLPMH 83 (198)
Q Consensus 12 ~~~~~~~s~~~~~L~V~VisA~~L~~~------~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~W--NE~f~f~v~~~ 83 (198)
+.|..+.....-.|.|++-.|++|..- +..+...-|...++-|+ -.+|..-++ ..+|.+ ++.-.|.+...
T Consensus 181 QIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn-~Vt~~~F~~-l~~~~f~~er~s~vRirSS 258 (340)
T PF12416_consen 181 QIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN-DVTTEPFKS-LSSPSFPPERASGVRIRSS 258 (340)
T ss_pred eeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc-EeEeeeccc-cCCCCcCeeeeeEEeeccc
Confidence 334434445567889999999998532 11123566788888775 344443333 256643 34433555321
Q ss_pred ----------CceEEEEEEecccCCCCCceeEEEEEeCceeeccc
Q 036193 84 ----------VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGY 118 (198)
Q Consensus 84 ----------~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~ 118 (198)
...|.|-+++ ++..||.+.|++..++...
T Consensus 259 ~~~L~~yf~~~~~L~I~Lc~------g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 259 LRVLRRYFQQIPKLQIHLCC------GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred HHHHHHHHhhCCCeEEEEee------CCcEEEEEEEEhhhccCCC
Confidence 2466666654 4678999999999998653
No 166
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=49.74 E-value=2.4 Score=40.56 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=40.9
Q ss_pred cEEEEEEEEccCCCC----CCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCC
Q 036193 23 RTVEITVLSAEDLRV----DGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPM 82 (198)
Q Consensus 23 ~~L~V~VisA~~L~~----~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~ 82 (198)
|..-.++|+|.++.+ ....-++++++..+++. +.+||.....+ .+|+|||. .|....
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~-~~frt~~~~~~-e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE-QTFRTEISDDT-EKPIYNED-EREDSD 340 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecch-hhhhhhhhccc-cccccccc-cccccc
Confidence 444467788887743 12234689999999985 58899887765 99999998 555543
No 167
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=48.21 E-value=25 Score=36.25 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCcCcEEEEEEEEccCCCCCCCCCCCCcEEEEEECCC------CeeEeeecCCCCCCCe--eceEEEEEeC----CCCce
Q 036193 19 SSHSRTVEITVLSAEDLRVDGRSVKKKAFAVVKLDPF------NNRVTKVDAIGGSYPA--WDEKLVMKLP----MHVTF 86 (198)
Q Consensus 19 s~~~~~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~------~k~rT~v~~~~g~nP~--WNE~f~f~v~----~~~~~ 86 (198)
+.....|.++|-.|+++...+...-.|=|..+++..+ ..+.-++...++.=|. |++-+.|++. +.++.
T Consensus 631 ~~~s~~L~ftv~a~H~ip~~W~s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~ 710 (1639)
T KOG0905|consen 631 LSKSDFLQFTVYAAHRIPENWVSQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETR 710 (1639)
T ss_pred cccccceeeeeecccCCChHhhhhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhhe
Confidence 3445679999999999987766556788888887421 1112234444456565 9999999875 33578
Q ss_pred EEEEEEecccCCCC-----------CceeEEEEEeCceeec
Q 036193 87 ITLEVQCRTCSGSG-----------DRLVGRATLLVSDFIG 116 (198)
Q Consensus 87 L~v~V~d~~~~~~~-----------d~~lG~~~vpl~~l~~ 116 (198)
|++++|.-.....+ -..||++.+||-++..
T Consensus 711 L~~tL~G~~~~s~gan~d~n~err~~~~LGw~slpLfdf~~ 751 (1639)
T KOG0905|consen 711 LTVTLFGIVRASAGANADQNKERRVPEALGWCSLPLFDFRR 751 (1639)
T ss_pred EEEEEeeeecCCCCCCchhcccccchhhhheeeccccchhh
Confidence 99999843200111 2579999999987653
No 168
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=38.07 E-value=44 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred eeEEEEEeCceeeccccCCCcceeEEEEEEcCCCC--cceEEEEEEEEEecCCC
Q 036193 103 LVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGI--RSGILNVSVRVKEGSGL 154 (198)
Q Consensus 103 ~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~--~~G~L~l~v~f~~~~~~ 154 (198)
++|.+.||+..+..... ....||++.+...+ ..|.| +.+++.....-
T Consensus 1 ~~G~v~i~~~~~~~~~~----~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~~VL 49 (395)
T cd05137 1 LVGRIDITLEMILDRGL----DKETWLPIFDVDNKSVGEGLI-IKVSSEENFVL 49 (395)
T ss_pred CeeEEEeehhhhccCCC----CceeeeccccCCCCCcCcceE-EEEEeeeceec
Confidence 48999999998554421 24579999986443 34566 68888776554
No 169
>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only]
Probab=37.41 E-value=1.1e+02 Score=24.67 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred CceEEEEEEecccCCCCCceeEEEEEeCceeeccccCCCcceeEEEEEEcCCCCcceEEEEEEEEEecCCCCc-------
Q 036193 84 VTFITLEVQCRTCSGSGDRLVGRATLLVSDFIGGYVPENHLNFLSYLLRDARGIRSGILNVSVRVKEGSGLGL------- 156 (198)
Q Consensus 84 ~~~L~v~V~d~~~~~~~d~~lG~~~vpl~~l~~~~~~~~~~~~~~~~L~~~~g~~~G~L~l~v~f~~~~~~~~------- 156 (198)
...+.++|+..+ ..++.++.+.+|+.-++..+ ..+++- ++..+++.+..||-..=-+.+
T Consensus 75 ~~~l~v~i~~~~---~~~~~~~~v~~P~G~llp~G--------v~lqiD---~~k~~~~~f~~C~p~GC~A~v~l~~~ll 140 (181)
T COG5342 75 QRVLSVEIRRTA---DNGRKILTVLVPFGLLLPKG--------VSLQID---DGKIGKLYFVTCFPDGCYAEVPLDDELL 140 (181)
T ss_pred eEEEEEEEEEec---CCCcEEEEEEeccceecCCC--------ceEEeC---CCcceeEEEEEecCCceEEEeeCCHHHH
Confidence 357777776654 23889999999999888654 244442 333488888888865321111
Q ss_pred --cccccccccCCCCCCCCceEEeeecC--CCceEEeee
Q 036193 157 --LKSRYEYCSSSPSAQQKPVIGADAKK--FNGLVAEIP 191 (198)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~ 191 (198)
-+..-.-++.+ ...++...+|||.. |.+++-++|
T Consensus 141 ~~Lk~Gt~l~~~~-~~~~~~~v~i~v~LkGF~~ald~l~ 178 (181)
T COG5342 141 AALKSGTTLTFTS-TADQEQPVPIPVSLKGFGEALDRLP 178 (181)
T ss_pred HHHhCCCeEEEEE-eccCCCCceeEEeccchHHHhhhch
Confidence 11112222333 23334447888876 777776665
No 170
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=30.42 E-value=77 Score=30.27 Aligned_cols=70 Identities=6% Similarity=-0.091 Sum_probs=44.3
Q ss_pred EEEEEEEEccCCCCCCCCCCCCcEEEEEECCCCeeEeeecCCCCCCCeeceEEEEEeCCCC-ceEEEEEEecc
Q 036193 24 TVEITVLSAEDLRVDGRSVKKKAFAVVKLDPFNNRVTKVDAIGGSYPAWDEKLVMKLPMHV-TFITLEVQCRT 95 (198)
Q Consensus 24 ~L~V~VisA~~L~~~~~~~~~dpYv~v~l~~~~k~rT~v~~~~g~nP~WNE~f~f~v~~~~-~~L~v~V~d~~ 95 (198)
......+.+.++......+..+||..+...+ +..++-..-.|.++.||+.|.|+-.... ....|..+++.
T Consensus 98 ~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~--cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI 168 (590)
T KOG1032|consen 98 IGSSALLAGVNLASEFLNGVPDPEILLTDYS--CALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEI 168 (590)
T ss_pred cchhhhhcchhhhhhhhhcCCCcceeeeecc--hhhccccccccccccccceeeecccccCccceeEEeeeee
Confidence 3334444444444333345679999988765 4455545555799999999999986443 55556666654
No 171
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=29.21 E-value=1.9e+02 Score=19.65 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=26.3
Q ss_pred CCCcceeEEEEEEcCC---CCcceEEEEEEEEEecCCC
Q 036193 120 PENHLNFLSYLLRDAR---GIRSGILNVSVRVKEGSGL 154 (198)
Q Consensus 120 ~~~~~~~~~~~L~~~~---g~~~G~L~l~v~f~~~~~~ 154 (198)
++.....+|..|.++. ...+|.|.++|........
T Consensus 10 P~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~ 47 (72)
T PF08151_consen 10 PDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDE 47 (72)
T ss_pred CCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCc
Confidence 3445567799999874 3579999999999876544
No 172
>COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]
Probab=26.41 E-value=16 Score=30.78 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=14.0
Q ss_pred eecCCCceEEeeeecc
Q 036193 179 DAKKFNGLVAEIPVWN 194 (198)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (198)
|+|+|+..+.|+|.|+
T Consensus 86 PIDGT~NFv~G~P~fa 101 (260)
T COG0483 86 PIDGTTNFVRGIPFFA 101 (260)
T ss_pred CCCCcHHHHcCCCcce
Confidence 7889999999999985
No 173
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=23.09 E-value=3.2e+02 Score=20.26 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=30.7
Q ss_pred EEEEEECCCCeeEee--ecCCC---CCCCeeceEEEEEeCCCCceEEEEEEec
Q 036193 47 FAVVKLDPFNNRVTK--VDAIG---GSYPAWDEKLVMKLPMHVTFITLEVQCR 94 (198)
Q Consensus 47 Yv~v~l~~~~k~rT~--v~~~~---g~nP~WNE~f~f~v~~~~~~L~v~V~d~ 94 (198)
||.+.++.++...|. +..++ ...-.+++.|.|..-...-.|.|+||+.
T Consensus 37 ~~l~k~~~~~~~~t~~~~~~dgs~~~~~i~f~~~~~~~~~~~dF~v~vevy~~ 89 (140)
T PF08174_consen 37 FCLLKYGPEEWDATFLVVARDGSFARTDICFPDTFEFSNVGPDFEVTVEVYNE 89 (140)
T ss_pred EEEEecCCceEEEEeeEEccCcccccceEecCceeeecccCCCcEEEEEEEEE
Confidence 344444534455554 23332 2457788889888876667999999987
No 174
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=22.84 E-value=43 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=13.1
Q ss_pred eecCCCceEEeeeecccC
Q 036193 179 DAKKFNGLVAEIPVWNPY 196 (198)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (198)
+++.-.-+++|-|+||.-
T Consensus 70 d~~~YD~I~lG~PvW~~~ 87 (156)
T PF12682_consen 70 DLSDYDTIFLGTPVWWGT 87 (156)
T ss_dssp -GGG-SEEEEEEEEETTE
T ss_pred CcccCCEEEEechHHcCC
Confidence 556677899999999864
Done!