Query 036194
Match_columns 300
No_of_seqs 331 out of 1713
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1584 Sulfotransferase [Gene 100.0 3.9E-65 8.4E-70 466.2 19.0 224 69-300 1-228 (297)
2 PLN02164 sulfotransferase 100.0 1.8E-63 4E-68 471.1 19.8 237 58-299 31-271 (346)
3 PF00685 Sulfotransfer_1: Sulf 100.0 8.9E-30 1.9E-34 229.3 9.2 187 106-297 1-206 (267)
4 PF13469 Sulfotransfer_3: Sulf 99.0 3E-10 6.4E-15 97.2 5.0 24 266-291 191-214 (215)
5 KOG3988 Protein-tyrosine sulfo 98.7 1.1E-08 2.4E-13 93.3 5.5 91 194-294 175-267 (378)
6 KOG3704 Heparan sulfate D-gluc 98.4 6.3E-07 1.4E-11 81.6 6.0 105 176-288 172-288 (360)
7 PF09037 Sulphotransf: Stf0 su 98.2 1.2E-06 2.6E-11 80.0 4.8 89 195-291 112-219 (245)
8 KOG3703 Heparan sulfate N-deac 97.3 0.0027 5.9E-08 63.3 11.6 88 194-287 685-789 (873)
9 PF03567 Sulfotransfer_2: Sulf 94.7 0.042 9E-07 48.5 4.4 23 196-218 78-100 (253)
10 KOG3922 Sulfotransferases [Pos 93.4 0.076 1.6E-06 49.7 3.4 100 108-218 80-182 (361)
11 PF06990 Gal-3-0_sulfotr: Gala 90.7 0.7 1.5E-05 45.3 6.8 107 101-218 62-170 (402)
12 COG4424 Uncharacterized protei 80.9 1.3 2.8E-05 39.5 2.5 31 261-291 188-218 (250)
13 KOG4157 beta-1,6-N-acetylgluco 73.7 0.75 1.6E-05 45.2 -1.0 167 100-294 198-370 (418)
14 PF08440 Poty_PP: Potyviridae 50.2 7.2 0.00016 36.3 0.9 68 78-159 45-115 (274)
15 KOG4651 Chondroitin 6-sulfotra 49.6 9.5 0.00021 36.4 1.6 33 104-136 79-111 (324)
16 COG3551 Uncharacterized protei 43.9 1.6E+02 0.0035 28.1 8.6 76 198-293 136-213 (402)
17 COG4424 Uncharacterized protei 42.7 18 0.0004 32.3 2.2 28 107-134 6-33 (250)
18 PF13671 AAA_33: AAA domain; P 36.8 30 0.00065 27.6 2.5 21 109-129 2-23 (143)
19 PF14392 zf-CCHC_4: Zinc knuck 35.1 15 0.00033 24.7 0.4 14 12-25 23-36 (49)
20 COG1158 Rho Transcription term 33.2 35 0.00076 33.0 2.6 27 105-131 172-199 (422)
21 PRK14489 putative bifunctional 27.8 51 0.0011 31.7 2.8 28 106-133 205-233 (366)
22 PF03205 MobB: Molybdopterin g 25.5 70 0.0015 26.3 2.9 25 109-133 3-28 (140)
23 cd00227 CPT Chloramphenicol (C 23.5 67 0.0015 27.0 2.5 22 108-129 4-26 (175)
24 cd00808 GluRS_core catalytic c 23.3 1.1E+02 0.0023 28.0 3.8 54 236-291 11-69 (239)
25 COG4088 Predicted nucleotide k 22.9 78 0.0017 28.7 2.8 25 109-133 4-29 (261)
26 PRK04040 adenylate kinase; Pro 21.0 81 0.0018 27.3 2.5 21 109-129 5-26 (188)
27 TIGR03715 KxYKxGKxW KxYKxGKxW 20.7 71 0.0015 19.0 1.5 15 115-129 7-21 (29)
No 1
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=3.9e-65 Score=466.19 Aligned_cols=224 Identities=45% Similarity=0.916 Sum_probs=205.5
Q ss_pred CCccCCCC-ccceeeCcEeccccchhhHHHhhhcCccCCCCEEEEccCCCccchHHHHHHHHHcccCCCc-CCCCCCCCC
Q 036194 69 PKVKICNG-FDLFQYQAFWCPSIAIDGVISFQKHFQAEESDIILVPYPKSGTTWLKTLTFSIVNRSRYAI-ENSPLLTTS 146 (300)
Q Consensus 69 p~~~~~~~-~~~~~~~g~~~p~~~~~~~l~~~~~f~~r~~DV~IaSyPKSGTTWl~~il~~i~~~~~~~~-~~~pl~~~~ 146 (300)
|+.++|.+ ..++.|+|+|+++.+.+++...+++|++||||||||||||||||||++|+++|+++++.+. +.+||..++
T Consensus 1 p~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~~~pL~~~~ 80 (297)
T KOG1584|consen 1 PSEKGSRGRFKLVEYQGCWYPPKFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAKRHPLLERN 80 (297)
T ss_pred CCccCcCCCcCeEEECCEEecHHHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCcccccCCchhhcC
Confidence 56677887 7899999999999999999999999999999999999999999999999999999998877 459999999
Q ss_pred CCCcccceecccccCCCCchhhhhccCCCccEEEecCCCCCCCCcccCCCceEEEEeeCCcccchhhhhhhhh--hcCCC
Q 036194 147 PHHLIPFVEFNLYHNNNQSLDLECFSSSTRRMFSTHVPYASLPSSILSSNCRIVYICRNPLDQFISEWQFIAR--RNNSH 224 (300)
Q Consensus 147 ~~~~vP~lE~~~~~~~~~~~~l~~~ps~~pRlikTHlp~~~lp~~l~~~~~KiIyv~RnP~Dv~vS~y~f~~~--~~~~~ 224 (300)
|+..+|++|.... +...+..++| ||++|||+|+++||+++++++|||||++|||||++||+|||.+. ....+
T Consensus 81 P~~e~p~~e~~~~----~~~~~~~l~S--PRl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~ 154 (297)
T KOG1584|consen 81 PHLEVPFLELQLY----GNDSAPDLPS--PRLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGP 154 (297)
T ss_pred Cceeecccccccc----cccccccCCC--CcceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCCCC
Confidence 9999999887665 3445666788 99999999999999999999999999999999999999999994 34556
Q ss_pred CCHHHHHHHhcccccccCchHHHHHHHHHhhccCCCeEEEEehHHHhhcHHHHHHHHHHHhCCCCCHHHHhcccCC
Q 036194 225 LDLDEAFERTCKGIQSFGPFWDHVLGYWKASKEQPDKILFLKYEDLKEDGTFYIKRMADFLGCPFSEDEVTQGVVQ 300 (300)
Q Consensus 225 ~s~~e~~~~f~~g~~~~g~~~~hv~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~e~i~~~v~~ 300 (300)
++|++|++.||+|.+.||+||+||++||+. ++++||||++||||++||..+|+|||+|||+++++|++++||++
T Consensus 155 ~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~ 228 (297)
T KOG1584|consen 155 GTFEEFFESFCNGVVPYGPWWDHVLGYWEL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVH 228 (297)
T ss_pred CcHHHHHHHHhCCcCCcCChHHHHHHHHHh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHH
Confidence 679999999999999999999999999995 57889999999999999999999999999999999999999864
No 2
>PLN02164 sulfotransferase
Probab=100.00 E-value=1.8e-63 Score=471.13 Aligned_cols=237 Identities=42% Similarity=0.849 Sum_probs=209.9
Q ss_pred hhhcccccccCCCccCCCCcc-ceeeCcEeccccchhhHHHhhhcCccCCCCEEEEccCCCccchHHHHHHHHHcccCCC
Q 036194 58 KEDQELFLTQLPKVKICNGFD-LFQYQAFWCPSIAIDGVISFQKHFQAEESDIILVPYPKSGTTWLKTLTFSIVNRSRYA 136 (300)
Q Consensus 58 ~~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~p~~~~~~~l~~~~~f~~r~~DV~IaSyPKSGTTWl~~il~~i~~~~~~~ 136 (300)
.+++++ |+|||++++|.... +++|+|+|+|..++++++.++++|++|++|||||||||||||||++|+++|+++++++
T Consensus 31 ~~~~~~-~~~lp~~~~~~~~~~~~~y~G~w~~~~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~ 109 (346)
T PLN02164 31 KRYQDL-IATLPHKKGWRPKEPLIEYGGHWWLQPLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFD 109 (346)
T ss_pred HHHHHH-HhhCCCCcCCCCCCCeEEECCEEechhhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcc
Confidence 478999 99999999999765 9999999999988899999999999999999999999999999999999999988876
Q ss_pred cCCCCCCCCCCCCcccceecccccCCCCchhhhhccCCCccEEEecCCCCCCCCcccCCCceEEEEeeCCcccchhhhhh
Q 036194 137 IENSPLLTTSPHHLIPFVEFNLYHNNNQSLDLECFSSSTRRMFSTHVPYASLPSSILSSNCRIVYICRNPLDQFISEWQF 216 (300)
Q Consensus 137 ~~~~pl~~~~~~~~vP~lE~~~~~~~~~~~~l~~~ps~~pRlikTHlp~~~lp~~l~~~~~KiIyv~RnP~Dv~vS~y~f 216 (300)
...+||...+|++++||+|..... ....+.+.. ++ ||+||||+|++++|+++.++++|+|||+|||+|++||+|||
T Consensus 110 ~~~~pl~~~~p~~~vP~lE~~~~~-~~~~~~l~~-~~--PRlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf 185 (346)
T PLN02164 110 DSSNPLLKRNPHEFVPYIEIDFPF-FPSVDVLKD-KG--NTLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTF 185 (346)
T ss_pred cccCcccccCccccCCceecccCC-CCchhhhcc-CC--CCeeEecCChhhCccccccCCceEEEEecCchhheeeHHHH
Confidence 656899889999999999976541 122334444 56 99999999999999999999999999999999999999999
Q ss_pred hhhh---cCCCCCHHHHHHHhcccccccCchHHHHHHHHHhhccCCCeEEEEehHHHhhcHHHHHHHHHHHhCCCCCHHH
Q 036194 217 IARR---NNSHLDLDEAFERTCKGIQSFGPFWDHVLGYWKASKEQPDKILFLKYEDLKEDGTFYIKRMADFLGCPFSEDE 293 (300)
Q Consensus 217 ~~~~---~~~~~s~~e~~~~f~~g~~~~g~~~~hv~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~e~ 293 (300)
.... .....+|+++++.||.|...+|+||+|+++||+.+.+.+++||+|+||||++||.++|+|||+|||+++++++
T Consensus 186 ~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee 265 (346)
T PLN02164 186 LHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEE 265 (346)
T ss_pred HhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhh
Confidence 8732 2233689999999999999999999999999998644577999999999999999999999999999999987
Q ss_pred HhcccC
Q 036194 294 VTQGVV 299 (300)
Q Consensus 294 i~~~v~ 299 (300)
.++|+|
T Consensus 266 ~~~~~v 271 (346)
T PLN02164 266 EEKGVV 271 (346)
T ss_pred cchHHH
Confidence 666664
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.96 E-value=8.9e-30 Score=229.28 Aligned_cols=187 Identities=29% Similarity=0.508 Sum_probs=132.2
Q ss_pred CCCEEEEccCCCccchHHHHHHHHHcccCCCcCCCCCCCCCCCCcccceeccc----------------ccCCCCchhhh
Q 036194 106 ESDIILVPYPKSGTTWLKTLTFSIVNRSRYAIENSPLLTTSPHHLIPFVEFNL----------------YHNNNQSLDLE 169 (300)
Q Consensus 106 ~~DV~IaSyPKSGTTWl~~il~~i~~~~~~~~~~~pl~~~~~~~~vP~lE~~~----------------~~~~~~~~~l~ 169 (300)
+.+|||+|+||||||||.+||.+............+....+ ....|+++... .........+.
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVRLR 79 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccccccccccccch-hhhhhhhhhhhcccccccccccccccccccchhHHHHh
Confidence 57999999999999999999999755433211011111111 33444444310 00001122445
Q ss_pred hccCCCccEEEecCCCCCCCCcccCCCceEEEEeeCCcccchhhhhhhhhhc--CCCC-CHHHHHHHhcccccccCchHH
Q 036194 170 CFSSSTRRMFSTHVPYASLPSSILSSNCRIVYICRNPLDQFISEWQFIARRN--NSHL-DLDEAFERTCKGIQSFGPFWD 246 (300)
Q Consensus 170 ~~ps~~pRlikTHlp~~~lp~~l~~~~~KiIyv~RnP~Dv~vS~y~f~~~~~--~~~~-s~~e~~~~f~~g~~~~g~~~~ 246 (300)
..+. +|+++||+++..++..+..+++|+|+++|||+|+++|.+++..... .... .++++.+.++.+...++.|++
T Consensus 80 ~~~~--~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (267)
T PF00685_consen 80 DLPS--PRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWAD 157 (267)
T ss_dssp CSCS--SEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHH
T ss_pred hccC--chhhhhccccccccccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccc
Confidence 5566 9999999999887665557899999999999999999999887321 2222 378888888877788899999
Q ss_pred HHHHHHHhhccCCCeEEEEehHHHhhcHHHHHHHHHHHhCCCCCHHHHhcc
Q 036194 247 HVLGYWKASKEQPDKILFLKYEDLKEDGTFYIKRMADFLGCPFSEDEVTQG 297 (300)
Q Consensus 247 hv~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~e~i~~~ 297 (300)
++..||.. ..++++++|+||||+.||.+++++|++|||++++++.++..
T Consensus 158 ~~~~~~~~--~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~~~~~ 206 (267)
T PF00685_consen 158 HLKSWLSS--FDRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEPLDKI 206 (267)
T ss_dssp HHHHHHHH--TTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHHHHHH
T ss_pred cccchhhh--hccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhhhHHH
Confidence 99999985 35679999999999999999999999999999998887763
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.02 E-value=3e-10 Score=97.21 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=18.6
Q ss_pred ehHHHhhcHHHHHHHHHHHhCCCCCH
Q 036194 266 KYEDLKEDGTFYIKRMADFLGCPFSE 291 (300)
Q Consensus 266 ~YEDL~~Dp~~~v~rIa~FLG~~~s~ 291 (300)
+||||.+||.+++++|++ + +++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 679999999999999999 7 88764
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-08 Score=93.33 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCCceEEEEeeCCcccchhhhhhhhhhcCCCCCHHHHHHHhcccccccCchHHHHHHHHHh--hccCCCeEEEEehHHHh
Q 036194 194 SSNCRIVYICRNPLDQFISEWQFIARRNNSHLDLDEAFERTCKGIQSFGPFWDHVLGYWKA--SKEQPDKILFLKYEDLK 271 (300)
Q Consensus 194 ~~~~KiIyv~RnP~Dv~vS~y~f~~~~~~~~~s~~e~~~~f~~g~~~~g~~~~hv~~ww~~--~~~~~~~vl~v~YEDL~ 271 (300)
.|++|+++++||.|.++-|.-....... ..++.++.+.+. -|.+..+-... ..-+.++.+.|.||.|+
T Consensus 175 fPNAKfllMvRDgRAtVhSmIsRKVtIa--Gfdlssyr~c~t--------kWN~aie~M~~QC~~vg~~~Cl~VyYEqLV 244 (378)
T KOG3988|consen 175 FPNAKFLLMVRDGRATVHSMISRKVTIA--GFDLSSYRQCMT--------KWNQAIEVMYFQCMEVGKKKCLKVYYEQLV 244 (378)
T ss_pred CCCceEEEEEecchHHHHHHHhccceec--cccchHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 5899999999999999887554322111 112223322211 13332221111 00134589999999999
Q ss_pred hcHHHHHHHHHHHhCCCCCHHHH
Q 036194 272 EDGTFYIKRMADFLGCPFSEDEV 294 (300)
Q Consensus 272 ~Dp~~~v~rIa~FLG~~~s~e~i 294 (300)
.-|++.+++|.+||++|++++.+
T Consensus 245 lhPe~~mr~Il~FLdipw~d~vL 267 (378)
T KOG3988|consen 245 LHPEEWMRRILKFLDIPWSDAVL 267 (378)
T ss_pred hCHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999998655
No 6
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6.3e-07 Score=81.61 Aligned_cols=105 Identities=19% Similarity=0.320 Sum_probs=75.7
Q ss_pred ccEEEecCCCCCCCCccc--CCCceEEEEeeCCcccchhhhhhhhhhcCCCCCHHHHHHHhccc---c-------cccCc
Q 036194 176 RRMFSTHVPYASLPSSIL--SSNCRIVYICRNPLDQFISEWQFIARRNNSHLDLDEAFERTCKG---I-------QSFGP 243 (300)
Q Consensus 176 pRlikTHlp~~~lp~~l~--~~~~KiIyv~RnP~Dv~vS~y~f~~~~~~~~~s~~e~~~~f~~g---~-------~~~g~ 243 (300)
|..|.|-. .|+.+. +++.|.|.|+|||...++|-|-..-....+..+|+.+. |-.+ . +..|-
T Consensus 172 PsYFvt~e----~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~la--fkn~~~g~id~~w~ai~igl 245 (360)
T KOG3704|consen 172 PSYFVTRE----VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVLA--FKNRTAGLIDTSWKAIRIGL 245 (360)
T ss_pred chhhcccc----cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeeee--eecCccceeecchhhhhhhH
Confidence 44655532 344443 68899999999999999999976653333333444321 1111 1 23466
Q ss_pred hHHHHHHHHHhhccCCCeEEEEehHHHhhcHHHHHHHHHHHhCCC
Q 036194 244 FWDHVLGYWKASKEQPDKILFLKYEDLKEDGTFYIKRMADFLGCP 288 (300)
Q Consensus 244 ~~~hv~~ww~~~~~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~ 288 (300)
|..|+..|.+.. .-.+++||.=|.|+.||..++.|+-+|||+.
T Consensus 246 Y~~Hle~WL~yF--pL~q~lfVsGerli~dPa~E~~rVqdFLgLk 288 (360)
T KOG3704|consen 246 YAVHLENWLRYF--PLRQILFVSGERLISDPAGELGRVQDFLGLK 288 (360)
T ss_pred HHHHHHHHHHhC--chhheEEecCceeecCcHHHHHHHHHHhccc
Confidence 889999988874 3469999999999999999999999999986
No 7
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.24 E-value=1.2e-06 Score=80.01 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCceEEEEee-CCcccchhhhhhhhhh----c---C----------CCCCHHHHHHHhcccccccCchHHHHHHHHHhhc
Q 036194 195 SNCRIVYICR-NPLDQFISEWQFIARR----N---N----------SHLDLDEAFERTCKGIQSFGPFWDHVLGYWKASK 256 (300)
Q Consensus 195 ~~~KiIyv~R-nP~Dv~vS~y~f~~~~----~---~----------~~~s~~e~~~~f~~g~~~~g~~~~hv~~ww~~~~ 256 (300)
++.++||+.| |-..-+||++.-.... . . ...++++... .+. ..+.....|...+
T Consensus 112 ~~~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~-------~i~~~~~~w~~~f 183 (245)
T PF09037_consen 112 GDVKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LID-------RIEDQEAFWRNWF 183 (245)
T ss_dssp TS-EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHH-------HHHHHHHHHHHHH
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHH-------HHHHHHHHHHHHH
Confidence 3589999997 9999999998654411 0 0 0111222211 110 0111111222222
Q ss_pred -cCCCeEEEEehHHHhhcHHHHHHHHHHHhCCCCCH
Q 036194 257 -EQPDKILFLKYEDLKEDGTFYIKRMADFLGCPFSE 291 (300)
Q Consensus 257 -~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~ 291 (300)
...-+-+.|.||||.+||.+++.+|++|||++...
T Consensus 184 ~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 184 ARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp HHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred HHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 12234588999999999999999999999996544
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0027 Score=63.34 Aligned_cols=88 Identities=19% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCceEEEEeeCCcccchhhhhhhhhh-c----------------CCCCCHHHHHHHhcccccccCchHHHHHHHHHhhc
Q 036194 194 SSNCRIVYICRNPLDQFISEWQFIARR-N----------------NSHLDLDEAFERTCKGIQSFGPFWDHVLGYWKASK 256 (300)
Q Consensus 194 ~~~~KiIyv~RnP~Dv~vS~y~f~~~~-~----------------~~~~s~~e~~~~f~~g~~~~g~~~~hv~~ww~~~~ 256 (300)
-|.||||-|.-||-|.+.|+|.|.+.- . ..+..+.. ++.-| ..-|-|..|+..|....
T Consensus 685 vP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~-lq~RC---lvpG~Ya~HlerWL~y~- 759 (873)
T KOG3703|consen 685 VPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKA-LQNRC---LVPGWYATHLERWLTYF- 759 (873)
T ss_pred CCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHH-HHHhc---cCcchHHHHHHHHHHhC-
Confidence 368999999999999999999988721 0 00111111 22212 23355678888887764
Q ss_pred cCCCeEEEEehHHHhhcHHHHHHHHHHHhCC
Q 036194 257 EQPDKILFLKYEDLKEDGTFYIKRMADFLGC 287 (300)
Q Consensus 257 ~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~ 287 (300)
...++++|.=++|+.||..++..+-.|||+
T Consensus 760 -~~~QlliiDg~qLr~~Pa~vm~~~qkfLgv 789 (873)
T KOG3703|consen 760 -PAQQLLIIDGQQLRTNPATVMNELQKFLGV 789 (873)
T ss_pred -CcccEEEEccHHhccCcHHHHHHHHHHhCC
Confidence 356999999999999999999999999998
No 9
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=94.68 E-value=0.042 Score=48.53 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.4
Q ss_pred CceEEEEeeCCcccchhhhhhhh
Q 036194 196 NCRIVYICRNPLDQFISEWQFIA 218 (300)
Q Consensus 196 ~~KiIyv~RnP~Dv~vS~y~f~~ 218 (300)
+...|-++|||.|.++|.|++..
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~~ 100 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDKI 100 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHH
Confidence 47789999999999999998776
No 10
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.076 Score=49.67 Aligned_cols=100 Identities=14% Similarity=0.340 Sum_probs=57.8
Q ss_pred CEEEEccCCCccchHHHHHHHHHcccCCCcCCCCCCCCCCCCcccceecccccCCCCch---hhhhccCCCccEEEecCC
Q 036194 108 DIILVPYPKSGTTWLKTLTFSIVNRSRYAIENSPLLTTSPHHLIPFVEFNLYHNNNQSL---DLECFSSSTRRMFSTHVP 184 (300)
Q Consensus 108 DV~IaSyPKSGTTWl~~il~~i~~~~~~~~~~~pl~~~~~~~~vP~lE~~~~~~~~~~~---~l~~~ps~~pRlikTHlp 184 (300)
-|+----||||+|=...|+.-+..+..+.. ...+.+..-+- .. ..+... .+.......|-++.-|..
T Consensus 80 vViyNRVpKtGStTf~niaydL~ekn~F~v-----lh~nvtkn~~v----ls-l~dQ~qfvknIssw~e~~P~~yhgHV~ 149 (361)
T KOG3922|consen 80 VVIYNRVPKTGSTTFVNIAYDLSEKNGFHV-----LHINVTKNETV----LS-LPDQQQFVKNISSWTEMKPALYHGHVA 149 (361)
T ss_pred EEEEecCCCccchhHHHHHHHHHhccCceE-----EEeecccccee----ec-cHHHHHHHHhhccccccCcceeeeeee
Confidence 344455899999988889988877655543 11111110000 00 001111 122111122889999998
Q ss_pred CCCCCCcccCCCceEEEEeeCCcccchhhhhhhh
Q 036194 185 YASLPSSILSSNCRIVYICRNPLDQFISEWQFIA 218 (300)
Q Consensus 185 ~~~lp~~l~~~~~KiIyv~RnP~Dv~vS~y~f~~ 218 (300)
+--+.+ +--++.-+|-|+|||.+.++|+|+|.+
T Consensus 150 FldFsk-Fgi~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 150 FLDFSK-FGIARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred eeehhh-hCCCCceEEeeeccHHHHHHhHhhhhc
Confidence 743321 112345678889999999999999997
No 11
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=90.72 E-value=0.7 Score=45.33 Aligned_cols=107 Identities=12% Similarity=0.225 Sum_probs=61.0
Q ss_pred cCccCCCCEEEEccCCCccchHHHHHHHHHcccCCCcCCCCCCCCCCCCcccce-ecccccCCCCchhhhhccCCCccEE
Q 036194 101 HFQAEESDIILVPYPKSGTTWLKTLTFSIVNRSRYAIENSPLLTTSPHHLIPFV-EFNLYHNNNQSLDLECFSSSTRRMF 179 (300)
Q Consensus 101 ~f~~r~~DV~IaSyPKSGTTWl~~il~~i~~~~~~~~~~~pl~~~~~~~~vP~l-E~~~~~~~~~~~~l~~~ps~~pRli 179 (300)
.-+++.+=|||=| .|||+|=++.|+.......+.... .|... ..+-..|.. .... ........ ..-++
T Consensus 62 ~C~P~~nIvFlKT-HKTgSSTv~nIL~Rfg~~~nL~~a-lP~~~-~~~~~~P~~f~~~~------v~~~~~~~--~~nIl 130 (402)
T PF06990_consen 62 SCQPKTNIVFLKT-HKTGSSTVQNILFRFGEKHNLTFA-LPRGG-RNQFGYPAPFNARF------VEGYPPGG--RFNIL 130 (402)
T ss_pred cccccceEEEEec-CCcccHHHHHHHHHHHHHcCCEEe-cCCCC-CCCCCCCCcCCccc------cccCCCCC--CceEE
Confidence 4455555555555 599999999999886544332221 11100 011112211 1000 01111112 26789
Q ss_pred EecCCCCCC-CCcccCCCceEEEEeeCCcccchhhhhhhh
Q 036194 180 STHVPYASL-PSSILSSNCRIVYICRNPLDQFISEWQFIA 218 (300)
Q Consensus 180 kTHlp~~~l-p~~l~~~~~KiIyv~RnP~Dv~vS~y~f~~ 218 (300)
..|+.|+.- -..+..+++++|-|+|||...+.|.|+|.+
T Consensus 131 ~~H~rfn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~ 170 (402)
T PF06990_consen 131 CHHMRFNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYK 170 (402)
T ss_pred eehhccCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhh
Confidence 999998641 122333578999999999999999999886
No 12
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.86 E-value=1.3 Score=39.48 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=26.7
Q ss_pred eEEEEehHHHhhcHHHHHHHHHHHhCCCCCH
Q 036194 261 KILFLKYEDLKEDGTFYIKRMADFLGCPFSE 291 (300)
Q Consensus 261 ~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~ 291 (300)
.-+-|-||.|.+||.+.+..+|+.||++...
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~ 218 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPL 218 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCC
Confidence 3456789999999999999999999998643
No 13
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=73.73 E-value=0.75 Score=45.19 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=87.7
Q ss_pred hcCccCCCCEEEEccCCCccchHHHHHHHHHcc--cCCCcCCCCCCCCCCCCcccceecccccCCCCchhhhhccCCCcc
Q 036194 100 KHFQAEESDIILVPYPKSGTTWLKTLTFSIVNR--SRYAIENSPLLTTSPHHLIPFVEFNLYHNNNQSLDLECFSSSTRR 177 (300)
Q Consensus 100 ~~f~~r~~DV~IaSyPKSGTTWl~~il~~i~~~--~~~~~~~~pl~~~~~~~~vP~lE~~~~~~~~~~~~l~~~ps~~pR 177 (300)
..+.+-...+-+.|+|+.|+||++.++..+... +..-.+ ..+ .....+- |. ....-.. -+
T Consensus 198 ~~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~s~y~~-g~~----~~~~~~~-~~----------n~~~~~~--~~ 259 (418)
T KOG4157|consen 198 RSSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTGSIYKD-GGL----LKTGFPG-ER----------NHVCNSN--VS 259 (418)
T ss_pred cccCCCCCcccceeeeecccceeeeeeeceeeEeeeeEEec-ccc----ccccccc-cc----------cccccce--ee
Confidence 345555666889999999999999888775432 110000 000 0000000 00 0000011 45
Q ss_pred EEEecCCCCCCCCcccCCCceEEEEeeCCcccchhhhhhhhhhc---CCCCCHHH-HHHHhcccccccCchHHHHHHHHH
Q 036194 178 MFSTHVPYASLPSSILSSNCRIVYICRNPLDQFISEWQFIARRN---NSHLDLDE-AFERTCKGIQSFGPFWDHVLGYWK 253 (300)
Q Consensus 178 likTHlp~~~lp~~l~~~~~KiIyv~RnP~Dv~vS~y~f~~~~~---~~~~s~~e-~~~~f~~g~~~~g~~~~hv~~ww~ 253 (300)
.+++|..... +.......|.++|+|.-.++.......... .....+.. .+..+..+ ..-.|-.|..+ |.
T Consensus 260 ~~~~~~~~~~----v~~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~~-w~ 332 (418)
T KOG4157|consen 260 LVKTGEWGSV----VGAVFSAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTLS-WA 332 (418)
T ss_pred eeecceecce----eeecchhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccchh-hh
Confidence 7777776541 112334567888888755544433332110 00111100 01111111 11123355566 44
Q ss_pred hhccCCCeEEEEehHHHhhcHHHHHHHHHHHhCCCCCHHHH
Q 036194 254 ASKEQPDKILFLKYEDLKEDGTFYIKRMADFLGCPFSEDEV 294 (300)
Q Consensus 254 ~~~~~~~~vl~v~YEDL~~Dp~~~v~rIa~FLG~~~s~e~i 294 (300)
. ...+++.+.||++..++...+..+..|+|++..++..
T Consensus 333 ~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (418)
T KOG4157|consen 333 R---KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESLM 370 (418)
T ss_pred c---ccccceeEEeecccccccccccccccccCcccccccc
Confidence 3 2346699999999999999999999999988776543
No 14
>PF08440 Poty_PP: Potyviridae polyprotein; InterPro: IPR013648 This domain is found in polyproteins of the viral Potyviridae taxon. ; GO: 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0018144 RNA-protein covalent cross-linking
Probab=50.21 E-value=7.2 Score=36.31 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=46.3
Q ss_pred cceeeCcEeccccchhhHHHhhhcCccCCCCEEEEc--cC-CCccchHHHHHHHHHcccCCCcCCCCCCCCCCCCcccce
Q 036194 78 DLFQYQAFWCPSIAIDGVISFQKHFQAEESDIILVP--YP-KSGTTWLKTLTFSIVNRSRYAIENSPLLTTSPHHLIPFV 154 (300)
Q Consensus 78 ~~~~~~g~~~p~~~~~~~l~~~~~f~~r~~DV~IaS--yP-KSGTTWl~~il~~i~~~~~~~~~~~pl~~~~~~~~vP~l 154 (300)
.+.+|+|. +-+++.+.++.|+.|+++|.++. .| ++.++|+..= .+...|. . + ......++||+
T Consensus 45 ~lV~~DGs-----Mhp~ih~lLK~~kLRdsei~L~~~aip~~~~~~W~tv~--eY~~~g~-~-----~-~~~~~vrIPF~ 110 (274)
T PF08440_consen 45 HLVRYDGS-----MHPEIHELLKKYKLRDSEIKLNKLAIPNRSVSSWLTVR--EYNRLGS-R-----I-DIDDDVRIPFY 110 (274)
T ss_pred HHhccCCC-----cCHHHHHHHHhccCCcchhccccccCccccCCCCCCHH--HHHhcCc-c-----c-CCCCCCeecee
Confidence 67788887 34567788899999999999987 57 8889998653 2222221 1 1 11345679998
Q ss_pred ecccc
Q 036194 155 EFNLY 159 (300)
Q Consensus 155 E~~~~ 159 (300)
-.+.+
T Consensus 111 ~~dip 115 (274)
T PF08440_consen 111 VKDIP 115 (274)
T ss_pred eCCCC
Confidence 76554
No 15
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=49.58 E-value=9.5 Score=36.37 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=26.4
Q ss_pred cCCCCEEEEccCCCccchHHHHHHHHHcccCCC
Q 036194 104 AEESDIILVPYPKSGTTWLKTLTFSIVNRSRYA 136 (300)
Q Consensus 104 ~r~~DV~IaSyPKSGTTWl~~il~~i~~~~~~~ 136 (300)
+-+-.++.|.-|||++|-...|...|.+.+.+.
T Consensus 79 apk~kl~~C~I~Ksms~l~~nimc~L~n~~~y~ 111 (324)
T KOG4651|consen 79 APKYKLIYCEIPKSMSTLWTNIMCLLYNETQYT 111 (324)
T ss_pred CCCCceEEEeecccHhhhhhhhheeEeChhhhc
Confidence 445678899999999999999988877655543
No 16
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.94 E-value=1.6e+02 Score=28.10 Aligned_cols=76 Identities=13% Similarity=-0.065 Sum_probs=49.0
Q ss_pred eEEEEeeCCcccchhhhhhhhhhcCCCCCHHHHHHHhcccccccCchHHHHH--HHHHhhccCCCeEEEEehHHHhhcHH
Q 036194 198 RIVYICRNPLDQFISEWQFIARRNNSHLDLDEAFERTCKGIQSFGPFWDHVL--GYWKASKEQPDKILFLKYEDLKEDGT 275 (300)
Q Consensus 198 KiIyv~RnP~Dv~vS~y~f~~~~~~~~~s~~e~~~~f~~g~~~~g~~~~hv~--~ww~~~~~~~~~vl~v~YEDL~~Dp~ 275 (300)
-+|.-.|+|..|+-|...-... +.+... --|..|.. .+|..++ .-..+.||-+..|+.
T Consensus 136 ~~iv~~r~plsVA~sl~rrD~~------~leksl----------iLw~~h~~~~~~~~~h~----~~~~~~yd~~l~d~r 195 (402)
T COG3551 136 YIIVHRRIPLSVASSLRRRDMT------ELEKSL----------ILWPYHGNKQRIREQHV----EEGADIYDVHLSDLR 195 (402)
T ss_pred eEEeecCCcHHHHHHHHhhhhh------hchHHH----------HHHHHhhHHHHHHHHhc----cchhhhHHHHHhhHH
Confidence 3455578888888886543321 111111 12455644 3565543 224678999999999
Q ss_pred HHHHHHHHHhCCCCCHHH
Q 036194 276 FYIKRMADFLGCPFSEDE 293 (300)
Q Consensus 276 ~~v~rIa~FLG~~~s~e~ 293 (300)
.+.-++.+-+|+++.+.-
T Consensus 196 qh~dr~~~~~~~~v~~a~ 213 (402)
T COG3551 196 QHPDRLVAAVNQRVGRAP 213 (402)
T ss_pred hChHHHHHHhcCcCCccc
Confidence 999999999999876643
No 17
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.74 E-value=18 Score=32.35 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCEEEEccCCCccchHHHHHHHHHcccC
Q 036194 107 SDIILVPYPKSGTTWLKTLTFSIVNRSR 134 (300)
Q Consensus 107 ~DV~IaSyPKSGTTWl~~il~~i~~~~~ 134 (300)
+..+|++-||||+|||..+|...-+.|+
T Consensus 6 r~Ylilt~pRSGStlLckllaatG~sG~ 33 (250)
T COG4424 6 RPYLILTTPRSGSTLLCKLLAATGCSGE 33 (250)
T ss_pred cceeEecCCCCcchHHHHHHHhcCCCCC
Confidence 4578999999999999999988655553
No 18
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=36.78 E-value=30 Score=27.56 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=17.6
Q ss_pred EEEEccCCCc-cchHHHHHHHH
Q 036194 109 IILVPYPKSG-TTWLKTLTFSI 129 (300)
Q Consensus 109 V~IaSyPKSG-TTWl~~il~~i 129 (300)
|++++.|-|| |||.+++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999 88988887553
No 19
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=35.10 E-value=15 Score=24.68 Aligned_cols=14 Identities=57% Similarity=1.037 Sum_probs=11.5
Q ss_pred ceeeccccCceeec
Q 036194 12 SCVKYEKLPHFYLH 25 (300)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (300)
--|+||+||.|..|
T Consensus 23 ~~v~YE~lp~~C~~ 36 (49)
T PF14392_consen 23 VKVKYERLPRFCFH 36 (49)
T ss_pred EEEEECCcChhhcC
Confidence 45899999999765
No 20
>COG1158 Rho Transcription termination factor [Transcription]
Probab=33.19 E-value=35 Score=32.99 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCCCEEEEccCCCc-cchHHHHHHHHHc
Q 036194 105 EESDIILVPYPKSG-TTWLKTLTFSIVN 131 (300)
Q Consensus 105 r~~DV~IaSyPKSG-TTWl~~il~~i~~ 131 (300)
+...-.||+-||+| ||.||.|..+|..
T Consensus 172 kGQR~LIVAPPkaGKT~lLq~IA~aIt~ 199 (422)
T COG1158 172 KGQRGLIVAPPKAGKTTLLQNIANAITT 199 (422)
T ss_pred CCceeeEecCCCCCchHHHHHHHHHHhc
Confidence 34567899999999 6688888888865
No 21
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=27.85 E-value=51 Score=31.70 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=21.3
Q ss_pred CCCEEEEccCCCc-cchHHHHHHHHHccc
Q 036194 106 ESDIILVPYPKSG-TTWLKTLTFSIVNRS 133 (300)
Q Consensus 106 ~~DV~IaSyPKSG-TTWl~~il~~i~~~~ 133 (300)
.--|.|+++|.|| ||++..++..+-.++
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g 233 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARG 233 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 3468899999999 666688888776643
No 22
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=25.55 E-value=70 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=17.3
Q ss_pred EEEEccCCCcc-chHHHHHHHHHccc
Q 036194 109 IILVPYPKSGT-TWLKTLTFSIVNRS 133 (300)
Q Consensus 109 V~IaSyPKSGT-TWl~~il~~i~~~~ 133 (300)
|-|+++..||= |.++.|+..+..++
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 57899999994 55555666665544
No 23
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=23.48 E-value=67 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.2
Q ss_pred CEEEEccCCCc-cchHHHHHHHH
Q 036194 108 DIILVPYPKSG-TTWLKTLTFSI 129 (300)
Q Consensus 108 DV~IaSyPKSG-TTWl~~il~~i 129 (300)
-|++++.|-|| |||.+++...+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47889999999 88888887664
No 24
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.32 E-value=1.1e+02 Score=27.98 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=39.0
Q ss_pred ccccccCchHHHHHHHHHhhccCCCeEEEEehHHHh-----hcHHHHHHHHHHHhCCCCCH
Q 036194 236 KGIQSFGPFWDHVLGYWKASKEQPDKILFLKYEDLK-----EDGTFYIKRMADFLGCPFSE 291 (300)
Q Consensus 236 ~g~~~~g~~~~hv~~ww~~~~~~~~~vl~v~YEDL~-----~Dp~~~v~rIa~FLG~~~s~ 291 (300)
.|....|....-+.+|..++. ..-.+++|.||.- .+-...+.+.++.||+.+++
T Consensus 11 tG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 11 TGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 355566778888889888753 2357899999962 22246777888899999986
No 25
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.89 E-value=78 Score=28.75 Aligned_cols=25 Identities=44% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEEccCCCc-cchHHHHHHHHHccc
Q 036194 109 IILVPYPKSG-TTWLKTLTFSIVNRS 133 (300)
Q Consensus 109 V~IaSyPKSG-TTWl~~il~~i~~~~ 133 (300)
|++.+||-|| ||.-+++...+-.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 6778899999 677777777665443
No 26
>PRK04040 adenylate kinase; Provisional
Probab=20.98 E-value=81 Score=27.28 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.1
Q ss_pred EEEEccCCCc-cchHHHHHHHH
Q 036194 109 IILVPYPKSG-TTWLKTLTFSI 129 (300)
Q Consensus 109 V~IaSyPKSG-TTWl~~il~~i 129 (300)
|.|++.|-|| ||+++.+...+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHh
Confidence 6788899999 66777666655
No 27
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=20.71 E-value=71 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.9
Q ss_pred CCCccchHHHHHHHH
Q 036194 115 PKSGTTWLKTLTFSI 129 (300)
Q Consensus 115 PKSGTTWl~~il~~i 129 (300)
=|||-+|+-.-+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 389999998876654
Done!