BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036195
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS----------LQKKISVCSFILIRR 69
+G+ GV GVGKST I L + + HK A+ AV L K + + R
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117
Query: 70 AYFFKLPN 77
A+ P+
Sbjct: 118 AFIRPSPS 125
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
Length = 337
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
+G+ GV GVGKST I L + + HK A+ AV
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
+G+ GV GVGKST I+ L + H+ A+ AV
Sbjct: 60 VGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAV 93
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
+GL G G GKST I+ M ++ HK ++ AV
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
+G+ GV GVGKST I+ L + H+ A+ AV
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
+G+ GV GVGKST I+ L + H+ A+ AV
Sbjct: 59 VGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAV 92
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
Length = 301
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK 47
++G +I +YG G+GKST L+ FS + K
Sbjct: 31 EEGALVIAVYGKGGIGKSTTSSNLSAAFSKLGKK 64
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 55 LQKKISVCSF--ILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPF 107
LQKK+SV S I + + +LP ++ A LE+ VHGC L L F
Sbjct: 1041 LQKKVSVVSVAEITFDTSVYSQLPGQEAFMR-AQTTTVLEKYKVHGCGGLENLYF 1094
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV 61
DGV + L G GVGKSTL + D +H+ + +++I V
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMV 56
>pdb|3IL6|A Chain A, Structure Of E. Faecalis Fabh In Complex With 2-({4-[(3r,
5s)-3,5-Dimethylpiperidin-1-Yl]-3-Phenoxybenzoyl}amino)
Benzoic Acid
Length = 321
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 27 GVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ-KKISVCSFILIRRAY-FFKLPNLKSICH- 83
G+ + ++ Q N SD+ H+ A + K+ S FIL+ F +P++
Sbjct: 40 GISERRIVTQENT--SDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQG 97
Query: 84 -----EALAF--PCLERIYVHGCPSLRKLPFSLESGK-RNGVLIGEEEWWNQLEWDDEAT 135
EA AF +V+ KL S G+ + G++IG E + L+W D +T
Sbjct: 98 AIGATEAFAFDISAAXSGFVYALSMAEKLVLS---GRYQTGLVIGGETFSKMLDWTDRST 154
Query: 136 KHVF 139
+F
Sbjct: 155 AVLF 158
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 16 GVKIIGLYGVRGVGKSTLIKQLNDMFS 42
G K+ +YG G+GKST L+ FS
Sbjct: 47 GAKVFAVYGKGGIGKSTTSSNLSAAFS 73
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 154 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 186
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 202 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 234
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 156 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 144 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 176
>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
Length = 320
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 27 GVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ-KKISVCSFILIRRAY-FFKLPNLKSICH- 83
G+ + ++ Q N SD+ H+ A + K+ S FIL+ F +P++
Sbjct: 39 GISERRIVTQENT--SDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQG 96
Query: 84 -----EALAFPCLERI--YVHGCPSLRKLPFSLESGK-RNGVLIGEEEWWNQLEWDDEAT 135
EA AF +V+ KL S G+ + G++IG E + L+W D +T
Sbjct: 97 AIGATEAFAFDISAACSGFVYALSMAEKLVLS---GRYQTGLVIGGETFSKMLDWTDRST 153
Query: 136 KHVF 139
+F
Sbjct: 154 AVLF 157
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
IGL+G GVGK+ LI +L + + ++++A
Sbjct: 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 27 GVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ-KKISVCSFILIRRAY-FFKLPNLKSICH- 83
G+ + ++ Q N SD+ H+ A + K+ S FIL+ F +P++
Sbjct: 60 GISERRIVTQENT--SDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQG 117
Query: 84 -----EALAFPCLERI--YVHGCPSLRKLPFSLESGK-RNGVLIGEEEWWNQLEWDDEAT 135
EA AF +V+ KL S G+ + G++IG E + L+W D +T
Sbjct: 118 AIGATEAFAFDISAACSGFVYALSMAEKLVLS---GRYQTGLVIGGETFSKMLDWTDRST 174
Query: 136 KHVF 139
+F
Sbjct: 175 AVLF 178
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 22 LYGVRGVGKSTLIKQL----------------NDMFSDMSHKFAIYAVSLQKKISVCSFI 65
+ G GVGK+TL+K++ D + F I +KKI F
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 66 LIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGK 113
++ N++ E LA P LER Y RK+ E GK
Sbjct: 65 TSKKLVGSYGVNVQ--YFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSK 142
+ + +P +ER+Y+ C + RK ++ + +W +Q++ DD KH S +
Sbjct: 176 DYMVWPWVERLYLLRCVNDRKF------VEKKSLFPNFADWGDQMQLDDIVKKHAHSPQ 228
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK 47
+ DG+ + L G GVGKSTL + D +H+
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,730,121
Number of Sequences: 62578
Number of extensions: 225473
Number of successful extensions: 599
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 30
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)