Query 036195
Match_columns 183
No_of_seqs 295 out of 2196
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-38 7E-43 246.8 4.8 168 7-175 18-213 (254)
2 COG1137 YhbG ABC-type (unclass 100.0 1.9E-38 4E-43 237.6 -1.7 166 5-175 16-213 (243)
3 COG1120 FepC ABC-type cobalami 100.0 2.9E-35 6.2E-40 231.1 4.2 171 5-175 14-213 (258)
4 COG0411 LivG ABC-type branched 100.0 4.3E-34 9.3E-39 220.2 0.3 166 11-176 24-225 (250)
5 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-33 4.8E-38 217.4 3.2 162 6-177 16-207 (248)
6 COG1125 OpuBA ABC-type proline 100.0 8.9E-33 1.9E-37 213.9 2.0 170 6-175 14-210 (309)
7 COG1127 Ttg2A ABC-type transpo 100.0 8.1E-32 1.8E-36 207.0 3.2 168 5-174 20-219 (263)
8 COG1126 GlnQ ABC-type polar am 100.0 1.1E-31 2.5E-36 203.4 2.6 166 5-175 14-210 (240)
9 COG1131 CcmA ABC-type multidru 100.0 3.8E-31 8.2E-36 213.8 4.2 164 6-175 18-211 (293)
10 COG1135 AbcC ABC-type metal io 100.0 3.5E-31 7.6E-36 209.9 1.9 169 5-175 18-216 (339)
11 TIGR01188 drrA daunorubicin re 100.0 8.8E-31 1.9E-35 212.7 3.6 163 6-175 6-198 (302)
12 PRK13537 nodulation ABC transp 100.0 8.9E-31 1.9E-35 213.0 3.5 163 6-175 20-212 (306)
13 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-30 2.4E-35 204.2 3.6 171 6-176 17-214 (235)
14 cd03259 ABC_Carb_Solutes_like 100.0 1E-30 2.3E-35 202.2 3.0 163 6-175 13-205 (213)
15 TIGR02314 ABC_MetN D-methionin 100.0 9E-31 2E-35 215.5 2.7 167 7-175 19-215 (343)
16 cd03265 ABC_DrrA DrrA is the A 100.0 1.7E-30 3.6E-35 202.0 3.1 164 6-175 13-206 (220)
17 COG3839 MalK ABC-type sugar tr 100.0 1.8E-30 3.8E-35 211.1 3.0 161 8-175 18-208 (338)
18 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-30 2.9E-35 193.0 1.9 163 11-175 19-204 (231)
19 PRK13536 nodulation factor exp 100.0 2.4E-30 5.3E-35 212.9 3.5 163 6-175 54-246 (340)
20 COG3842 PotA ABC-type spermidi 100.0 1.8E-30 3.9E-35 212.1 2.5 163 6-175 18-211 (352)
21 PRK09536 btuD corrinoid ABC tr 100.0 2.7E-30 5.9E-35 216.3 2.8 169 6-175 16-213 (402)
22 PRK11432 fbpC ferric transport 100.0 3.5E-30 7.6E-35 212.8 3.2 163 6-175 19-211 (351)
23 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.6E-30 1E-34 199.5 3.2 160 6-175 17-206 (220)
24 PRK11650 ugpC glycerol-3-phosp 100.0 4.3E-30 9.3E-35 212.7 2.9 163 6-175 17-209 (356)
25 COG1124 DppF ABC-type dipeptid 100.0 3.6E-30 7.9E-35 198.4 2.1 159 7-175 21-216 (252)
26 TIGR03265 PhnT2 putative 2-ami 100.0 4.9E-30 1.1E-34 212.1 3.1 163 6-175 17-209 (353)
27 COG1118 CysA ABC-type sulfate/ 100.0 3.6E-30 7.9E-35 203.9 1.8 162 7-175 16-212 (345)
28 COG4559 ABC-type hemin transpo 100.0 8.8E-30 1.9E-34 192.6 3.5 169 6-175 14-215 (259)
29 cd03261 ABC_Org_Solvent_Resist 100.0 7.4E-30 1.6E-34 200.2 3.2 168 6-175 13-211 (235)
30 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.4E-30 1.8E-34 197.7 2.9 168 6-175 17-214 (218)
31 COG1136 SalX ABC-type antimicr 100.0 1.3E-29 2.8E-34 195.7 3.6 168 6-175 18-216 (226)
32 TIGR01186 proV glycine betaine 100.0 7.9E-30 1.7E-34 211.1 2.5 169 6-175 6-204 (363)
33 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-29 2.4E-34 206.4 3.3 163 6-175 17-209 (303)
34 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-29 2.4E-34 196.4 2.6 163 6-175 13-205 (213)
35 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-29 2.9E-34 196.4 3.1 167 6-175 16-212 (216)
36 cd03225 ABC_cobalt_CbiO_domain 100.0 1E-29 2.2E-34 196.3 2.3 164 6-175 14-208 (211)
37 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-29 3.1E-34 195.5 2.9 158 11-175 18-203 (211)
38 cd03266 ABC_NatA_sodium_export 100.0 1.2E-29 2.5E-34 196.9 2.4 162 7-175 19-210 (218)
39 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-29 5.2E-34 204.2 4.0 162 6-175 15-206 (301)
40 PRK09452 potA putrescine/sperm 100.0 1.4E-29 3.1E-34 210.6 2.7 162 7-175 28-219 (375)
41 TIGR03258 PhnT 2-aminoethylpho 100.0 1.7E-29 3.8E-34 209.3 3.1 162 7-175 19-213 (362)
42 PRK11000 maltose/maltodextrin 100.0 1.7E-29 3.7E-34 210.1 2.9 163 6-175 16-208 (369)
43 TIGR01184 ntrCD nitrate transp 100.0 9.4E-30 2E-34 199.2 1.3 165 11-175 5-189 (230)
44 COG3638 ABC-type phosphate/pho 100.0 5.5E-30 1.2E-34 196.4 -0.1 171 5-175 16-222 (258)
45 PRK11153 metN DL-methionine tr 100.0 1.7E-29 3.8E-34 208.3 2.6 168 6-175 18-215 (343)
46 cd03263 ABC_subfamily_A The AB 100.0 3.9E-29 8.5E-34 194.2 3.6 162 6-175 15-206 (220)
47 cd03218 ABC_YhbG The ABC trans 100.0 3.5E-29 7.6E-34 195.9 3.3 165 6-175 13-207 (232)
48 COG0410 LivF ABC-type branched 99.9 2.5E-29 5.5E-34 192.4 2.3 166 6-175 16-211 (237)
49 PRK10851 sulfate/thiosulfate t 99.9 3.2E-29 6.9E-34 207.3 3.1 162 7-175 16-211 (353)
50 cd03219 ABC_Mj1267_LivG_branch 99.9 2.5E-29 5.3E-34 197.3 2.1 165 6-175 13-217 (236)
51 cd03256 ABC_PhnC_transporter A 99.9 3E-29 6.5E-34 197.2 2.5 168 6-175 14-219 (241)
52 cd03296 ABC_CysA_sulfate_impor 99.9 3.4E-29 7.4E-34 197.0 2.8 163 6-175 15-211 (239)
53 PRK11144 modC molybdate transp 99.9 5E-29 1.1E-33 206.3 3.5 164 11-175 18-203 (352)
54 PRK11300 livG leucine/isoleuci 99.9 3.9E-29 8.5E-34 198.3 2.7 166 6-175 18-228 (255)
55 TIGR02315 ABC_phnC phosphonate 99.9 4.5E-29 9.7E-34 196.6 3.0 168 6-175 15-220 (243)
56 cd03269 ABC_putative_ATPase Th 99.9 3.7E-29 8.1E-34 193.1 2.5 160 6-175 13-202 (210)
57 cd03226 ABC_cobalt_CbiO_domain 99.9 3.5E-29 7.7E-34 192.6 2.2 161 6-175 13-200 (205)
58 PRK11248 tauB taurine transpor 99.9 5.3E-29 1.1E-33 197.8 3.1 160 6-175 14-203 (255)
59 TIGR02211 LolD_lipo_ex lipopro 99.9 6.1E-29 1.3E-33 193.2 3.3 168 6-175 18-215 (221)
60 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.8E-29 1.9E-33 194.3 4.3 163 6-175 14-206 (236)
61 cd03258 ABC_MetN_methionine_tr 99.9 6.6E-29 1.4E-33 194.5 3.5 167 7-175 19-215 (233)
62 PRK10070 glycine betaine trans 99.9 4.9E-29 1.1E-33 208.6 2.8 167 8-175 43-239 (400)
63 PRK11607 potG putrescine trans 99.9 6.2E-29 1.4E-33 207.0 3.2 162 7-175 33-224 (377)
64 cd03295 ABC_OpuCA_Osmoprotecti 99.9 6.5E-29 1.4E-33 195.7 3.0 165 6-175 14-210 (242)
65 cd03268 ABC_BcrA_bacitracin_re 99.9 6.1E-29 1.3E-33 191.7 2.7 162 6-175 13-200 (208)
66 PRK13637 cbiO cobalt transport 99.9 4.4E-29 9.6E-34 201.4 1.9 166 7-175 21-219 (287)
67 PRK11247 ssuB aliphatic sulfon 99.9 6.8E-29 1.5E-33 197.4 2.8 160 6-175 25-208 (257)
68 cd03235 ABC_Metallic_Cations A 99.9 6.3E-29 1.4E-33 192.2 2.2 169 6-175 12-206 (213)
69 cd03294 ABC_Pro_Gly_Bertaine T 99.9 9E-29 2E-33 197.9 3.1 169 6-175 37-235 (269)
70 PRK10771 thiQ thiamine transpo 99.9 8.1E-29 1.8E-33 194.1 2.7 158 11-175 19-204 (232)
71 TIGR02673 FtsE cell division A 99.9 8.4E-29 1.8E-33 191.6 2.7 167 6-175 15-211 (214)
72 PRK11831 putative ABC transpor 99.9 9.4E-29 2E-33 197.8 2.9 168 6-175 20-218 (269)
73 TIGR02142 modC_ABC molybdenum 99.9 1.1E-28 2.3E-33 204.5 3.3 164 11-175 17-206 (354)
74 TIGR03415 ABC_choXWV_ATP choli 99.9 8.3E-29 1.8E-33 206.1 2.6 168 7-175 38-239 (382)
75 PRK13634 cbiO cobalt transport 99.9 8E-29 1.7E-33 200.2 2.4 169 6-175 20-220 (290)
76 cd03262 ABC_HisP_GlnQ_permease 99.9 1E-28 2.2E-33 190.9 2.7 166 6-175 13-209 (213)
77 PRK10908 cell division protein 99.9 1.2E-28 2.7E-33 191.8 3.1 167 6-175 15-211 (222)
78 PRK13641 cbiO cobalt transport 99.9 1E-28 2.2E-33 199.3 2.7 167 7-175 21-219 (287)
79 COG4555 NatA ABC-type Na+ tran 99.9 5.7E-29 1.2E-33 186.9 0.9 158 11-175 22-207 (245)
80 PRK13647 cbiO cobalt transport 99.9 7.3E-29 1.6E-33 198.9 1.6 164 6-175 18-212 (274)
81 cd03267 ABC_NatA_like Similar 99.9 1.5E-28 3.3E-33 193.1 3.2 164 6-175 34-228 (236)
82 PRK14250 phosphate ABC transpo 99.9 1.2E-28 2.6E-33 194.2 2.6 165 6-175 16-206 (241)
83 cd03214 ABC_Iron-Siderophores_ 99.9 7E-29 1.5E-33 187.5 1.0 149 7-175 13-172 (180)
84 PRK13646 cbiO cobalt transport 99.9 1.1E-28 2.5E-33 198.9 2.1 168 7-175 21-220 (286)
85 cd03264 ABC_drug_resistance_li 99.9 2.1E-28 4.6E-33 189.0 3.3 161 6-175 13-203 (211)
86 TIGR01277 thiQ thiamine ABC tr 99.9 1.8E-28 3.9E-33 189.8 2.9 158 11-175 18-203 (213)
87 cd03224 ABC_TM1139_LivF_branch 99.9 1.5E-28 3.3E-33 191.0 2.1 165 6-175 13-206 (222)
88 TIGR03411 urea_trans_UrtD urea 99.9 3.1E-28 6.6E-33 191.8 3.8 164 6-175 15-216 (242)
89 PRK15112 antimicrobial peptide 99.9 1.2E-28 2.5E-33 197.0 1.3 165 6-175 26-224 (267)
90 PRK10584 putative ABC transpor 99.9 2.1E-28 4.5E-33 191.1 2.6 167 7-175 24-220 (228)
91 TIGR03410 urea_trans_UrtE urea 99.9 1.7E-28 3.7E-33 191.9 2.1 166 6-175 13-206 (230)
92 PRK11629 lolD lipoprotein tran 99.9 2.5E-28 5.4E-33 191.4 2.9 168 6-175 22-219 (233)
93 PRK09493 glnQ glutamine ABC tr 99.9 2.8E-28 6.2E-33 191.8 3.2 166 6-175 14-210 (240)
94 cd03292 ABC_FtsE_transporter F 99.9 2E-28 4.4E-33 189.4 2.3 167 6-175 14-210 (214)
95 PRK13643 cbiO cobalt transport 99.9 2.8E-28 6.1E-33 196.8 3.1 167 7-175 20-218 (288)
96 PRK10575 iron-hydroxamate tran 99.9 2.7E-28 5.8E-33 194.7 2.8 165 6-175 24-222 (265)
97 PRK10253 iron-enterobactin tra 99.9 2.8E-28 6E-33 194.7 2.8 164 7-175 21-218 (265)
98 COG4604 CeuD ABC-type enteroch 99.9 2.2E-28 4.9E-33 183.2 2.1 170 5-174 13-209 (252)
99 PRK13652 cbiO cobalt transport 99.9 2E-28 4.4E-33 196.6 2.0 164 7-175 18-212 (277)
100 PRK13650 cbiO cobalt transport 99.9 2.6E-28 5.7E-33 196.2 2.5 163 7-175 21-214 (279)
101 cd03257 ABC_NikE_OppD_transpor 99.9 3.5E-28 7.6E-33 189.6 2.9 167 7-175 19-220 (228)
102 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.9E-28 4E-33 191.2 1.3 167 6-175 35-216 (224)
103 cd03260 ABC_PstB_phosphate_tra 99.9 3.4E-28 7.3E-33 189.9 2.6 165 6-175 13-214 (227)
104 PRK09544 znuC high-affinity zi 99.9 3.8E-28 8.2E-33 192.5 2.7 166 6-175 17-195 (251)
105 PRK10762 D-ribose transporter 99.9 4.3E-28 9.3E-33 209.1 2.9 165 6-175 17-215 (501)
106 PRK13651 cobalt transporter AT 99.9 3.8E-28 8.2E-33 197.4 2.3 167 7-175 21-239 (305)
107 PRK11308 dppF dipeptide transp 99.9 3.1E-28 6.7E-33 199.6 1.7 168 6-175 28-229 (327)
108 TIGR02769 nickel_nikE nickel i 99.9 5E-28 1.1E-32 193.2 2.8 168 6-175 24-225 (265)
109 PRK13649 cbiO cobalt transport 99.9 3.9E-28 8.5E-33 195.2 2.2 167 7-175 21-219 (280)
110 cd03297 ABC_ModC_molybdenum_tr 99.9 4.7E-28 1E-32 187.5 2.5 163 11-175 18-206 (214)
111 PRK13548 hmuV hemin importer A 99.9 6.1E-28 1.3E-32 192.0 3.1 165 6-175 15-215 (258)
112 PRK10895 lipopolysaccharide AB 99.9 6E-28 1.3E-32 190.1 2.8 165 6-175 16-211 (241)
113 PRK13639 cbiO cobalt transport 99.9 5.2E-28 1.1E-32 194.1 2.1 165 7-175 16-211 (275)
114 TIGR03005 ectoine_ehuA ectoine 99.9 6.2E-28 1.3E-32 191.2 2.4 170 6-175 13-221 (252)
115 PRK13636 cbiO cobalt transport 99.9 5.9E-28 1.3E-32 194.5 2.2 167 6-175 19-216 (283)
116 TIGR03608 L_ocin_972_ABC putat 99.9 7.5E-28 1.6E-32 185.2 2.7 166 6-174 11-206 (206)
117 PRK15079 oligopeptide ABC tran 99.9 3.8E-28 8.2E-33 199.4 1.0 168 6-175 34-236 (331)
118 PRK13648 cbiO cobalt transport 99.9 1.2E-27 2.5E-32 191.5 3.8 163 7-175 23-216 (269)
119 TIGR03740 galliderm_ABC gallid 99.9 9.6E-28 2.1E-32 186.9 3.1 160 6-175 13-198 (223)
120 PRK15439 autoinducer 2 ABC tra 99.9 8.4E-28 1.8E-32 207.7 3.0 165 6-175 24-214 (510)
121 TIGR02770 nickel_nikD nickel i 99.9 8.1E-28 1.8E-32 188.2 2.6 158 11-175 6-200 (230)
122 PRK11614 livF leucine/isoleuci 99.9 4.7E-28 1E-32 190.2 1.2 165 6-175 18-211 (237)
123 cd03300 ABC_PotA_N PotA is an 99.9 1.1E-27 2.4E-32 187.7 3.3 162 7-175 14-205 (232)
124 TIGR00972 3a0107s01c2 phosphat 99.9 1.3E-27 2.8E-32 188.8 3.6 164 7-175 15-217 (247)
125 PRK10247 putative ABC transpor 99.9 1.2E-27 2.5E-32 186.8 3.3 165 6-176 20-212 (225)
126 PRK13635 cbiO cobalt transport 99.9 8.2E-28 1.8E-32 193.3 2.5 163 7-175 21-214 (279)
127 PRK11231 fecE iron-dicitrate t 99.9 9.8E-28 2.1E-32 190.4 2.7 164 6-175 15-212 (255)
128 PRK13633 cobalt transporter AT 99.9 9.7E-28 2.1E-32 193.0 2.7 165 6-175 23-218 (280)
129 PRK13538 cytochrome c biogenes 99.9 1.7E-27 3.7E-32 183.2 3.8 162 6-174 14-202 (204)
130 TIGR03873 F420-0_ABC_ATP propo 99.9 1.4E-27 3E-32 189.6 3.3 164 6-175 14-211 (256)
131 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.1E-27 2.4E-32 189.4 2.6 157 13-175 21-190 (246)
132 PRK13645 cbiO cobalt transport 99.9 6.7E-28 1.4E-32 194.7 1.4 168 7-175 25-225 (289)
133 TIGR03771 anch_rpt_ABC anchore 99.9 1.2E-27 2.7E-32 186.4 2.7 163 12-175 1-187 (223)
134 PRK09700 D-allose transporter 99.9 1E-27 2.2E-32 207.2 2.4 165 6-175 18-219 (510)
135 PRK11124 artP arginine transpo 99.9 1.5E-27 3.3E-32 187.8 3.2 169 6-175 15-215 (242)
136 PRK10619 histidine/lysine/argi 99.9 1.9E-27 4.2E-32 188.9 3.8 169 6-175 18-226 (257)
137 PRK11264 putative amino-acid A 99.9 1.8E-27 4E-32 188.2 3.5 169 6-175 16-218 (250)
138 PRK13638 cbiO cobalt transport 99.9 8.8E-28 1.9E-32 192.3 1.4 166 6-175 14-210 (271)
139 PRK09984 phosphonate/organopho 99.9 1.5E-27 3.3E-32 190.0 2.8 169 6-175 17-227 (262)
140 PRK09700 D-allose transporter 99.9 2.7E-27 5.8E-32 204.5 4.3 165 6-175 276-483 (510)
141 cd03231 ABC_CcmA_heme_exporter 99.9 3.2E-27 7E-32 181.3 4.2 162 6-174 13-198 (201)
142 COG4608 AppF ABC-type oligopep 99.9 1.8E-27 3.9E-32 186.7 2.8 146 7-175 27-184 (268)
143 cd03299 ABC_ModC_like Archeal 99.9 1.6E-27 3.5E-32 187.1 2.6 161 8-175 14-204 (235)
144 PRK15056 manganese/iron transp 99.9 1.7E-27 3.7E-32 190.8 2.7 169 6-175 20-216 (272)
145 TIGR01978 sufC FeS assembly AT 99.9 3E-27 6.4E-32 186.1 3.9 165 6-175 13-219 (243)
146 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-27 4.7E-32 184.6 2.8 167 6-175 18-215 (220)
147 PRK13543 cytochrome c biogenes 99.9 4.2E-27 9.1E-32 182.3 4.4 162 6-176 24-212 (214)
148 PRK10418 nikD nickel transport 99.9 2.7E-27 5.8E-32 187.8 3.3 163 6-175 16-215 (254)
149 PRK10261 glutathione transport 99.9 2.3E-27 5E-32 209.1 2.9 167 7-175 338-538 (623)
150 TIGR00968 3a0106s01 sulfate AB 99.9 2.5E-27 5.4E-32 186.3 2.8 163 6-175 13-205 (237)
151 PRK13644 cbiO cobalt transport 99.9 2.4E-27 5.2E-32 190.2 2.7 163 7-175 16-209 (274)
152 COG4175 ProV ABC-type proline/ 99.9 1.6E-27 3.4E-32 189.6 1.3 163 11-174 48-238 (386)
153 cd03229 ABC_Class3 This class 99.9 1.2E-27 2.7E-32 180.4 0.6 152 6-175 13-175 (178)
154 PRK13549 xylose transporter AT 99.9 3E-27 6.5E-32 204.1 3.0 165 6-175 18-217 (506)
155 PRK13640 cbiO cobalt transport 99.9 2.8E-27 6E-32 190.5 2.5 163 7-175 21-217 (282)
156 COG1123 ATPase components of v 99.9 3.7E-27 8.1E-32 200.5 3.4 168 7-175 305-504 (539)
157 PRK15439 autoinducer 2 ABC tra 99.9 5.5E-27 1.2E-31 202.6 4.5 163 8-175 278-477 (510)
158 PRK10982 galactose/methyl gala 99.9 3.3E-27 7.1E-32 203.1 3.0 165 6-175 11-208 (491)
159 PRK13632 cbiO cobalt transport 99.9 3.9E-27 8.4E-32 188.6 3.1 164 6-175 22-216 (271)
160 cd03245 ABCC_bacteriocin_expor 99.9 4.3E-27 9.3E-32 182.7 3.2 162 6-175 17-212 (220)
161 PRK10938 putative molybdenum t 99.9 3.7E-27 8E-32 202.7 3.1 164 6-175 16-209 (490)
162 PRK13631 cbiO cobalt transport 99.9 2.9E-27 6.3E-32 193.4 2.2 167 7-175 40-250 (320)
163 PRK10762 D-ribose transporter 99.9 5.5E-27 1.2E-31 202.2 4.0 164 7-175 266-469 (501)
164 PRK11022 dppD dipeptide transp 99.9 2.3E-27 5.1E-32 194.4 1.4 169 6-175 20-228 (326)
165 PRK09473 oppD oligopeptide tra 99.9 3.5E-27 7.6E-32 193.6 2.3 169 6-175 29-236 (330)
166 PRK15093 antimicrobial peptide 99.9 3.4E-27 7.3E-32 193.8 2.1 169 6-175 20-233 (330)
167 cd03248 ABCC_TAP TAP, the Tran 99.9 5.3E-27 1.1E-31 183.0 2.5 161 7-175 28-222 (226)
168 COG2884 FtsE Predicted ATPase 99.9 8.4E-27 1.8E-31 173.7 3.5 167 6-175 15-211 (223)
169 PRK14241 phosphate transporter 99.9 1E-26 2.3E-31 184.8 4.2 167 6-177 17-223 (258)
170 cd03251 ABCC_MsbA MsbA is an e 99.9 1.2E-26 2.6E-31 181.8 4.2 161 7-175 16-210 (234)
171 PRK11288 araG L-arabinose tran 99.9 5.1E-27 1.1E-31 202.4 2.3 165 6-175 17-214 (501)
172 PRK11701 phnK phosphonate C-P 99.9 5.2E-27 1.1E-31 186.6 2.1 169 6-175 19-226 (258)
173 cd03234 ABCG_White The White s 99.9 1.1E-26 2.4E-31 181.3 3.8 161 6-175 20-218 (226)
174 cd03252 ABCC_Hemolysin The ABC 99.9 8.3E-27 1.8E-31 183.1 3.1 162 6-175 15-210 (237)
175 PRK10982 galactose/methyl gala 99.9 1.3E-26 2.9E-31 199.3 4.6 165 6-175 261-465 (491)
176 PRK11288 araG L-arabinose tran 99.9 9.6E-27 2.1E-31 200.7 3.7 164 7-175 267-470 (501)
177 PRK13547 hmuV hemin importer A 99.9 7.8E-27 1.7E-31 187.0 2.8 170 6-175 14-229 (272)
178 cd03244 ABCC_MRP_domain2 Domai 99.9 1.1E-26 2.5E-31 180.5 3.5 161 7-175 18-211 (221)
179 PRK03695 vitamin B12-transport 99.9 1E-26 2.2E-31 184.0 3.2 162 7-175 10-207 (248)
180 PRK13642 cbiO cobalt transport 99.9 7.2E-27 1.6E-31 187.6 2.4 163 7-175 21-214 (277)
181 PRK14267 phosphate ABC transpo 99.9 1.2E-26 2.6E-31 183.9 3.3 165 6-175 17-222 (253)
182 cd03230 ABC_DR_subfamily_A Thi 99.9 8.3E-27 1.8E-31 175.1 2.2 145 7-175 14-169 (173)
183 PRK14269 phosphate ABC transpo 99.9 1.2E-26 2.6E-31 183.2 3.2 162 7-175 16-215 (246)
184 COG4152 ABC-type uncharacteriz 99.9 5.1E-27 1.1E-31 181.0 1.0 161 5-175 14-204 (300)
185 PRK13549 xylose transporter AT 99.9 1.7E-26 3.6E-31 199.4 4.2 165 6-175 275-479 (506)
186 TIGR02324 CP_lyasePhnL phospho 99.9 1.2E-26 2.6E-31 180.8 3.0 167 6-174 21-222 (224)
187 cd03254 ABCC_Glucan_exporter_l 99.9 1E-26 2.2E-31 181.7 2.5 161 7-175 17-211 (229)
188 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.1E-26 4.6E-31 180.9 4.3 162 6-175 16-211 (238)
189 TIGR02633 xylG D-xylose ABC tr 99.9 1.2E-26 2.6E-31 200.0 3.1 165 6-175 273-477 (500)
190 TIGR02323 CP_lyasePhnK phospho 99.9 1.4E-26 3.1E-31 183.4 3.1 168 7-175 17-223 (253)
191 cd03236 ABC_RNaseL_inhibitor_d 99.9 7E-27 1.5E-31 185.6 1.3 165 7-175 15-213 (255)
192 cd03215 ABC_Carb_Monos_II This 99.9 1.3E-26 2.8E-31 175.4 2.7 153 8-175 15-178 (182)
193 cd03246 ABCC_Protease_Secretio 99.9 1.1E-26 2.3E-31 174.5 2.1 143 7-175 16-169 (173)
194 PRK13546 teichoic acids export 99.9 9.4E-27 2E-31 185.8 1.8 169 4-175 35-217 (264)
195 cd03228 ABCC_MRP_Like The MRP 99.9 1.2E-26 2.7E-31 173.9 2.3 142 7-175 16-168 (171)
196 TIGR01166 cbiO cobalt transpor 99.9 1.2E-26 2.6E-31 176.5 2.3 155 6-164 5-190 (190)
197 TIGR03269 met_CoM_red_A2 methy 99.9 2E-26 4.4E-31 199.5 3.8 168 6-175 297-502 (520)
198 COG4525 TauB ABC-type taurine 99.9 7.7E-27 1.7E-31 174.9 0.7 170 5-176 17-208 (259)
199 TIGR01257 rim_protein retinal- 99.9 1.5E-26 3.2E-31 221.0 2.7 163 6-175 1952-2144(2272)
200 PRK15134 microcin C ABC transp 99.9 1.2E-26 2.7E-31 201.2 2.0 169 6-175 22-231 (529)
201 PRK14268 phosphate ABC transpo 99.9 2.3E-26 5E-31 182.9 3.4 164 7-175 26-227 (258)
202 COG4148 ModC ABC-type molybdat 99.9 1.6E-26 3.4E-31 181.3 2.1 164 11-175 18-203 (352)
203 PRK14259 phosphate ABC transpo 99.9 2E-26 4.3E-31 184.4 2.7 164 7-175 27-227 (269)
204 TIGR02633 xylG D-xylose ABC tr 99.9 1.9E-26 4.2E-31 198.8 2.5 165 6-175 14-215 (500)
205 PRK13539 cytochrome c biogenes 99.9 4.6E-26 1E-30 175.7 4.3 157 7-174 16-198 (207)
206 PRK14242 phosphate transporter 99.9 3.2E-26 6.9E-31 181.5 3.5 165 6-175 19-222 (253)
207 PRK14244 phosphate ABC transpo 99.9 3E-26 6.5E-31 181.5 3.1 165 6-175 18-222 (251)
208 PRK14247 phosphate ABC transpo 99.9 3.3E-26 7.2E-31 181.1 3.3 163 6-175 16-219 (250)
209 cd03222 ABC_RNaseL_inhibitor T 99.9 1.6E-26 3.4E-31 174.1 1.3 123 7-175 14-146 (177)
210 PRK10419 nikE nickel transport 99.9 1.7E-26 3.8E-31 184.6 1.6 168 6-175 25-226 (268)
211 PRK14256 phosphate ABC transpo 99.9 4.9E-26 1.1E-30 180.3 4.1 165 6-175 17-221 (252)
212 cd03253 ABCC_ATM1_transporter 99.9 4.9E-26 1.1E-30 178.6 4.0 162 6-175 14-209 (236)
213 PRK15134 microcin C ABC transp 99.9 1.8E-26 3.9E-31 200.1 1.7 167 6-175 299-500 (529)
214 CHL00131 ycf16 sulfate ABC tra 99.9 4.3E-26 9.3E-31 180.6 3.6 165 6-175 20-226 (252)
215 PRK14235 phosphate transporter 99.9 2.9E-26 6.3E-31 183.2 2.6 165 6-175 32-236 (267)
216 PRK13545 tagH teichoic acids e 99.9 2.4E-26 5.2E-31 196.2 2.1 167 6-175 37-217 (549)
217 TIGR03269 met_CoM_red_A2 methy 99.9 2.6E-26 5.6E-31 198.8 2.3 170 6-175 13-243 (520)
218 PRK14275 phosphate ABC transpo 99.9 2.8E-26 6.1E-31 185.0 2.3 164 7-175 53-255 (286)
219 PRK09580 sufC cysteine desulfu 99.9 5.3E-26 1.2E-30 179.6 3.7 165 6-175 14-220 (248)
220 cd03213 ABCG_EPDR ABCG transpo 99.9 5.9E-26 1.3E-30 173.5 3.7 151 6-175 22-186 (194)
221 COG1129 MglA ABC-type sugar tr 99.9 3.9E-26 8.5E-31 193.0 2.5 167 7-174 22-218 (500)
222 cd03233 ABC_PDR_domain1 The pl 99.9 4.6E-26 9.9E-31 175.1 2.6 160 6-175 20-194 (202)
223 cd03216 ABC_Carb_Monos_I This 99.9 2.2E-26 4.8E-31 171.4 0.7 133 6-175 13-156 (163)
224 PRK14251 phosphate ABC transpo 99.9 3.9E-26 8.4E-31 180.8 2.0 165 6-175 17-220 (251)
225 cd03247 ABCC_cytochrome_bd The 99.9 4.1E-26 8.9E-31 172.1 1.9 144 7-175 16-170 (178)
226 PRK13540 cytochrome c biogenes 99.9 8.2E-26 1.8E-30 173.4 3.6 154 6-166 14-192 (200)
227 TIGR01189 ccmA heme ABC export 99.9 1.1E-25 2.4E-30 172.4 4.0 158 6-172 13-196 (198)
228 PRK14253 phosphate ABC transpo 99.9 9E-26 2E-30 178.5 3.4 164 6-175 16-218 (249)
229 cd03369 ABCC_NFT1 Domain 2 of 99.9 9.8E-26 2.1E-30 173.7 3.5 157 7-175 22-197 (207)
230 PRK14270 phosphate ABC transpo 99.9 8.4E-26 1.8E-30 178.9 3.2 165 6-175 17-220 (251)
231 PRK14248 phosphate ABC transpo 99.9 6.3E-26 1.4E-30 181.3 2.3 165 6-175 34-237 (268)
232 cd03217 ABC_FeS_Assembly ABC-t 99.9 6.6E-26 1.4E-30 174.0 2.1 153 6-175 13-179 (200)
233 COG1123 ATPase components of v 99.9 9.6E-26 2.1E-30 191.9 3.3 168 7-175 23-229 (539)
234 PRK14263 phosphate ABC transpo 99.9 1.5E-25 3.3E-30 178.6 4.2 167 6-177 21-224 (261)
235 PRK14237 phosphate transporter 99.9 1.1E-25 2.4E-30 179.8 3.4 165 6-175 33-236 (267)
236 PRK15177 Vi polysaccharide exp 99.9 5.2E-26 1.1E-30 176.2 1.4 159 8-175 2-177 (213)
237 PRK14273 phosphate ABC transpo 99.9 6.9E-26 1.5E-30 179.7 2.1 165 6-175 20-223 (254)
238 PRK14240 phosphate transporter 99.9 1.3E-25 2.9E-30 177.6 3.7 165 6-175 16-219 (250)
239 PRK13409 putative ATPase RIL; 99.9 1.1E-25 2.4E-30 196.9 3.6 157 11-175 359-528 (590)
240 COG4586 ABC-type uncharacteriz 99.9 7.2E-26 1.6E-30 177.0 1.8 164 11-176 44-232 (325)
241 PRK15064 ABC transporter ATP-b 99.9 1.9E-25 4E-30 193.9 4.5 166 6-175 14-226 (530)
242 PRK10261 glutathione transport 99.9 8.8E-26 1.9E-30 199.1 2.4 169 7-175 30-243 (623)
243 PRK14245 phosphate ABC transpo 99.9 1.6E-25 3.5E-30 177.2 3.7 165 6-175 16-219 (250)
244 COG0444 DppD ABC-type dipeptid 99.9 6E-26 1.3E-30 181.6 1.1 168 6-174 18-227 (316)
245 PRK10744 pstB phosphate transp 99.9 9.1E-26 2E-30 179.7 2.0 164 7-175 27-229 (260)
246 cd03232 ABC_PDR_domain2 The pl 99.9 1.4E-25 3E-30 171.2 2.8 150 6-175 20-183 (192)
247 PRK14271 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 179.0 3.9 164 6-175 34-236 (276)
248 PRK13541 cytochrome c biogenes 99.9 2.8E-25 6.1E-30 169.8 4.2 146 11-166 20-188 (195)
249 TIGR01257 rim_protein retinal- 99.9 1.8E-25 3.9E-30 213.6 3.5 162 6-175 943-1134(2272)
250 PRK10938 putative molybdenum t 99.9 2E-25 4.2E-30 192.1 3.4 166 6-175 273-477 (490)
251 PRK14274 phosphate ABC transpo 99.9 1.5E-25 3.2E-30 178.3 2.3 165 6-175 25-228 (259)
252 COG4674 Uncharacterized ABC-ty 99.9 6.5E-26 1.4E-30 169.8 0.2 159 11-175 25-220 (249)
253 PRK14261 phosphate ABC transpo 99.9 1.6E-25 3.6E-30 177.4 2.4 165 6-175 19-222 (253)
254 PRK14272 phosphate ABC transpo 99.9 3.3E-25 7.1E-30 175.5 4.0 165 6-175 17-221 (252)
255 cd03223 ABCD_peroxisomal_ALDP 99.9 3.3E-25 7.1E-30 165.5 3.8 137 6-175 14-161 (166)
256 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.7E-25 3.8E-30 179.3 2.4 161 6-175 17-210 (275)
257 PRK14254 phosphate ABC transpo 99.9 2.3E-25 5E-30 179.6 3.1 163 6-173 52-251 (285)
258 PRK14265 phosphate ABC transpo 99.9 2.6E-25 5.6E-30 178.4 3.4 164 7-175 34-234 (274)
259 cd03250 ABCC_MRP_domain1 Domai 99.9 6.7E-25 1.5E-29 168.7 5.5 157 7-175 19-201 (204)
260 TIGR01187 potA spermidine/putr 99.9 1E-25 2.2E-30 184.7 0.9 147 22-175 1-175 (325)
261 PRK14260 phosphate ABC transpo 99.9 2.2E-25 4.7E-30 177.4 2.6 166 6-176 20-224 (259)
262 COG1134 TagH ABC-type polysacc 99.9 1.3E-25 2.8E-30 173.5 0.8 159 6-175 40-221 (249)
263 PRK11819 putative ABC transpor 99.9 6.6E-25 1.4E-29 191.4 5.4 165 6-175 20-234 (556)
264 PRK13409 putative ATPase RIL; 99.9 1.4E-25 3.1E-30 196.2 1.1 163 8-175 89-285 (590)
265 PRK14239 phosphate transporter 99.9 2.2E-25 4.8E-30 176.5 1.8 164 7-175 19-221 (252)
266 PRK14243 phosphate transporter 99.9 3.2E-25 6.9E-30 177.0 2.7 164 7-175 24-224 (264)
267 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.3E-25 5.1E-30 162.7 1.8 117 7-175 14-141 (144)
268 PRK15064 ABC transporter ATP-b 99.9 5.3E-25 1.2E-29 191.0 4.1 159 6-175 332-509 (530)
269 PRK14262 phosphate ABC transpo 99.9 5.3E-25 1.1E-29 174.2 3.6 165 6-175 16-219 (250)
270 PRK14236 phosphate transporter 99.9 5.1E-25 1.1E-29 176.5 3.6 165 6-175 38-241 (272)
271 cd03290 ABCC_SUR1_N The SUR do 99.9 8.7E-25 1.9E-29 169.7 4.6 167 6-175 14-215 (218)
272 PRK11819 putative ABC transpor 99.9 6.7E-25 1.5E-29 191.4 4.4 161 6-175 337-516 (556)
273 PRK14258 phosphate ABC transpo 99.9 2.9E-25 6.4E-30 176.8 1.7 166 7-175 21-225 (261)
274 PRK14249 phosphate ABC transpo 99.9 5E-25 1.1E-29 174.5 3.0 165 6-175 17-220 (251)
275 PRK14246 phosphate ABC transpo 99.9 8.7E-25 1.9E-29 173.8 4.0 163 6-175 23-226 (257)
276 cd03288 ABCC_SUR2 The SUR doma 99.9 8.4E-25 1.8E-29 173.9 3.6 162 6-175 34-228 (257)
277 PRK10636 putative ABC transpor 99.9 1E-24 2.3E-29 192.7 4.5 165 6-175 14-220 (638)
278 PRK14238 phosphate transporter 99.9 3.1E-25 6.7E-30 177.7 1.0 164 7-175 38-240 (271)
279 PRK10636 putative ABC transpor 99.9 6.5E-25 1.4E-29 194.0 3.1 163 6-175 325-501 (638)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-24 2.3E-29 189.9 4.4 162 6-176 335-515 (552)
281 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.6E-24 3.6E-29 188.8 5.3 165 6-175 18-232 (552)
282 COG4133 CcmA ABC-type transpor 99.9 1.6E-24 3.5E-29 161.2 4.2 151 6-160 15-189 (209)
283 COG3845 ABC-type uncharacteriz 99.9 6.9E-25 1.5E-29 183.0 2.3 163 11-174 24-213 (501)
284 cd03238 ABC_UvrA The excision 99.9 9.9E-25 2.1E-29 164.2 2.7 142 5-175 7-162 (176)
285 PRK14255 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 172.4 3.1 165 6-175 18-221 (252)
286 PRK14252 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 173.7 3.0 166 7-175 30-234 (265)
287 PRK14264 phosphate ABC transpo 99.9 1.1E-24 2.4E-29 177.2 2.4 165 6-175 58-274 (305)
288 PRK14266 phosphate ABC transpo 99.9 1.8E-24 4E-29 171.1 3.0 165 6-175 16-219 (250)
289 COG4619 ABC-type uncharacteriz 99.9 2.5E-24 5.3E-29 157.9 3.1 166 5-175 15-208 (223)
290 PRK11147 ABC transporter ATPas 99.9 5.7E-24 1.2E-28 188.1 5.2 164 6-175 16-227 (635)
291 PRK11176 lipid transporter ATP 99.9 3.3E-24 7.2E-29 187.8 3.5 162 6-175 356-552 (582)
292 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 3.9E-24 8.5E-29 190.6 3.7 160 6-175 466-658 (686)
293 PRK11160 cysteine/glutathione 99.9 5.9E-24 1.3E-28 186.1 4.1 162 6-175 353-547 (574)
294 COG1119 ModF ABC-type molybden 99.9 1.3E-23 2.7E-28 162.4 5.2 170 5-175 43-247 (257)
295 PLN03073 ABC transporter F fam 99.9 5.2E-24 1.1E-28 189.7 3.4 158 7-175 523-698 (718)
296 PRK10790 putative multidrug tr 99.9 8.7E-24 1.9E-28 185.6 4.8 162 6-175 354-548 (592)
297 PRK11147 ABC transporter ATPas 99.9 5.7E-24 1.2E-28 188.1 3.6 159 6-175 332-511 (635)
298 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 9.6E-24 2.1E-28 188.7 4.6 160 6-175 492-685 (710)
299 PRK14257 phosphate ABC transpo 99.9 6.6E-24 1.4E-28 174.2 3.1 164 7-175 96-298 (329)
300 TIGR01842 type_I_sec_PrtD type 99.9 1.3E-23 2.8E-28 182.9 4.9 163 6-175 331-527 (544)
301 COG1101 PhnK ABC-type uncharac 99.9 8.5E-24 1.8E-28 160.5 2.9 170 6-175 19-223 (263)
302 PRK10522 multidrug transporter 99.9 7.6E-24 1.6E-28 184.5 2.8 164 6-175 336-523 (547)
303 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-23 3.1E-28 187.6 4.6 160 6-175 494-687 (711)
304 TIGR02857 CydD thiol reductant 99.9 9.6E-24 2.1E-28 183.1 3.2 161 6-174 335-529 (529)
305 PRK11174 cysteine/glutathione 99.9 1.8E-23 3.9E-28 183.4 4.9 161 6-175 363-557 (588)
306 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.5E-23 3.1E-28 183.0 3.3 162 7-175 356-544 (555)
307 TIGR03375 type_I_sec_LssB type 99.9 1.2E-23 2.5E-28 187.8 2.7 162 6-175 478-673 (694)
308 PLN03211 ABC transporter G-25; 99.9 1.1E-23 2.5E-28 186.3 2.6 169 6-175 81-281 (659)
309 TIGR02203 MsbA_lipidA lipid A 99.9 1.5E-23 3.3E-28 183.2 3.1 162 6-175 345-541 (571)
310 TIGR01193 bacteriocin_ABC ABC- 99.9 2.7E-23 5.8E-28 185.8 4.6 161 6-175 487-682 (708)
311 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.2E-23 6.9E-28 166.8 4.2 157 6-175 50-232 (282)
312 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.8E-24 1.7E-28 156.5 0.6 131 7-175 13-154 (157)
313 COG4181 Predicted ABC-type tra 99.9 1.7E-23 3.6E-28 154.0 2.0 163 7-170 24-216 (228)
314 COG1117 PstB ABC-type phosphat 99.9 8.5E-24 1.8E-28 160.3 0.0 165 5-171 19-218 (253)
315 PRK10535 macrolide transporter 99.9 3.2E-23 7E-28 183.6 3.6 167 6-175 21-217 (648)
316 TIGR01192 chvA glucan exporter 99.9 4.7E-23 1E-27 180.8 4.5 162 6-175 348-543 (585)
317 PRK10789 putative multidrug tr 99.9 6.6E-23 1.4E-27 179.3 5.3 162 6-175 328-523 (569)
318 COG4598 HisP ABC-type histidin 99.9 1.9E-23 4.1E-28 155.0 1.6 168 7-175 20-226 (256)
319 TIGR00954 3a01203 Peroxysomal 99.9 8.3E-23 1.8E-27 181.2 5.0 161 7-175 466-652 (659)
320 TIGR02204 MsbA_rel ABC transpo 99.9 8.6E-23 1.9E-27 178.7 4.9 162 6-175 353-548 (576)
321 COG2274 SunT ABC-type bacterio 99.9 6.6E-23 1.4E-27 181.6 3.5 161 7-175 487-681 (709)
322 COG4172 ABC-type uncharacteriz 99.9 3.2E-23 6.9E-28 169.8 1.1 167 7-174 301-500 (534)
323 TIGR01846 type_I_sec_HlyB type 99.9 1.3E-22 2.9E-27 181.0 4.9 162 6-175 470-665 (694)
324 COG1132 MdlB ABC-type multidru 99.9 1.5E-22 3.3E-27 177.0 4.8 162 6-175 342-537 (567)
325 PRK13657 cyclic beta-1,2-gluca 99.9 1.2E-22 2.6E-27 178.3 4.1 162 6-175 348-543 (588)
326 COG4988 CydD ABC-type transpor 99.9 1.7E-22 3.7E-27 171.9 3.9 161 7-175 335-528 (559)
327 COG4167 SapF ABC-type antimicr 99.9 1.3E-22 2.9E-27 150.9 2.8 166 11-176 33-225 (267)
328 PTZ00265 multidrug resistance 99.9 1.4E-22 3.1E-27 191.6 3.8 169 7-176 399-654 (1466)
329 COG4138 BtuD ABC-type cobalami 99.9 4.6E-23 1E-27 152.3 -0.1 157 11-174 19-205 (248)
330 COG4987 CydC ABC-type transpor 99.9 2.6E-22 5.6E-27 169.1 4.0 164 5-176 350-547 (573)
331 TIGR02868 CydC thiol reductant 99.8 4E-22 8.6E-27 173.0 3.4 148 6-161 348-529 (529)
332 KOG0057 Mitochondrial Fe/S clu 99.8 8.3E-22 1.8E-26 166.3 3.2 162 5-175 364-559 (591)
333 PTZ00265 multidrug resistance 99.8 1.7E-21 3.7E-26 184.4 4.9 165 6-176 1181-1433(1466)
334 PLN03232 ABC transporter C fam 99.8 1.3E-21 2.8E-26 186.1 3.8 162 6-175 1249-1443(1495)
335 TIGR00956 3a01205 Pleiotropic 99.8 9.1E-22 2E-26 185.8 2.3 160 6-175 776-977 (1394)
336 PLN03130 ABC transporter C fam 99.8 1.6E-21 3.5E-26 186.0 3.8 161 7-175 1253-1446(1622)
337 TIGR00956 3a01205 Pleiotropic 99.8 1.7E-21 3.7E-26 184.0 3.4 171 5-175 73-285 (1394)
338 TIGR00955 3a01204 The Eye Pigm 99.8 1.4E-21 3E-26 172.4 2.6 162 5-175 37-241 (617)
339 KOG0059 Lipid exporter ABCA1 a 99.8 1.1E-21 2.4E-26 178.7 1.8 162 8-174 580-771 (885)
340 COG0488 Uup ATPase components 99.8 2.4E-21 5.3E-26 166.8 3.7 166 5-175 15-224 (530)
341 COG4172 ABC-type uncharacteriz 99.8 1.4E-21 3E-26 160.2 2.0 163 5-174 22-231 (534)
342 PLN03140 ABC transporter G fam 99.8 4.2E-21 9.1E-26 181.4 4.6 171 5-175 177-412 (1470)
343 PLN03073 ABC transporter F fam 99.8 2.7E-21 5.9E-26 172.4 2.4 166 6-175 190-415 (718)
344 COG4136 ABC-type uncharacteriz 99.8 2.3E-21 4.9E-26 140.2 1.1 155 11-173 22-206 (213)
345 PTZ00243 ABC transporter; Prov 99.8 8.9E-21 1.9E-25 180.6 4.4 161 7-175 1324-1518(1560)
346 PF00005 ABC_tran: ABC transpo 99.8 4.6E-21 1E-25 138.1 1.8 103 11-118 5-117 (137)
347 COG0396 sufC Cysteine desulfur 99.8 1.1E-20 2.4E-25 144.8 3.4 163 6-173 17-217 (251)
348 PLN03140 ABC transporter G fam 99.8 7.2E-21 1.6E-25 179.8 2.4 161 6-175 893-1094(1470)
349 TIGR00957 MRP_assoc_pro multi 99.8 2.1E-20 4.4E-25 178.1 5.2 161 7-175 1300-1493(1522)
350 KOG0058 Peptide exporter, ABC 99.8 2E-20 4.2E-25 162.4 4.2 163 5-175 480-676 (716)
351 cd03278 ABC_SMC_barmotin Barmo 99.8 5.9E-21 1.3E-25 146.3 0.6 156 11-181 17-195 (197)
352 cd03270 ABC_UvrA_I The excisio 99.8 1.1E-20 2.5E-25 147.6 0.7 84 90-175 117-212 (226)
353 TIGR01271 CFTR_protein cystic 99.8 2.9E-20 6.3E-25 176.7 3.2 161 6-175 1232-1425(1490)
354 cd03272 ABC_SMC3_euk Eukaryoti 99.8 5.5E-20 1.2E-24 144.8 4.2 157 17-178 23-237 (243)
355 COG0488 Uup ATPase components 99.8 4.9E-20 1.1E-24 158.8 2.9 150 6-175 335-510 (530)
356 TIGR00957 MRP_assoc_pro multi 99.8 1.2E-19 2.6E-24 172.9 5.5 159 6-175 651-835 (1522)
357 TIGR01271 CFTR_protein cystic 99.8 7.1E-20 1.5E-24 174.1 4.0 157 6-175 439-621 (1490)
358 KOG0055 Multidrug/pheromone ex 99.8 2.4E-19 5.2E-24 163.3 4.8 162 6-175 366-561 (1228)
359 COG4618 ArpD ABC-type protease 99.8 3.8E-19 8.3E-24 149.2 4.8 164 5-175 348-545 (580)
360 PTZ00243 ABC transporter; Prov 99.8 1.9E-19 4E-24 171.6 1.9 165 6-175 673-855 (1560)
361 COG4161 ArtP ABC-type arginine 99.7 8.6E-19 1.9E-23 128.3 2.0 157 11-175 22-215 (242)
362 COG4778 PhnL ABC-type phosphon 99.7 9.4E-19 2E-23 129.0 1.9 166 6-172 24-223 (235)
363 PLN03130 ABC transporter C fam 99.7 3.2E-18 7E-23 163.6 5.5 149 6-175 630-813 (1622)
364 COG4107 PhnK ABC-type phosphon 99.7 2.9E-18 6.4E-23 126.9 3.7 162 11-174 26-225 (258)
365 PLN03232 ABC transporter C fam 99.7 4.4E-18 9.5E-23 162.1 4.2 150 6-175 630-813 (1495)
366 COG4615 PvdE ABC-type sideroph 99.7 2.7E-18 5.8E-23 140.7 0.9 151 11-162 343-510 (546)
367 cd03279 ABC_sbcCD SbcCD and ot 99.7 3.3E-18 7.2E-23 132.5 -0.7 154 16-175 27-207 (213)
368 cd03240 ABC_Rad50 The catalyti 99.7 4.1E-18 8.9E-23 131.2 -1.4 159 10-179 16-200 (204)
369 KOG0056 Heavy metal exporter H 99.7 4.4E-17 9.5E-22 136.7 4.3 163 5-175 550-746 (790)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.4E-17 3E-22 132.0 1.2 155 16-175 24-242 (251)
371 KOG0055 Multidrug/pheromone ex 99.6 1.6E-16 3.5E-21 145.1 5.2 163 5-175 1002-1198(1228)
372 COG5265 ATM1 ABC-type transpor 99.6 8.3E-17 1.8E-21 132.7 2.7 164 4-175 274-471 (497)
373 KOG0927 Predicted transporter 99.6 5.1E-17 1.1E-21 137.3 1.0 156 12-174 411-579 (614)
374 cd03271 ABC_UvrA_II The excisi 99.6 1.3E-16 2.7E-21 127.0 3.1 84 90-175 149-245 (261)
375 KOG0061 Transporter, ABC super 99.6 1.2E-16 2.6E-21 140.7 2.4 155 5-160 42-229 (613)
376 KOG0054 Multidrug resistance-a 99.6 2.5E-16 5.4E-21 146.3 4.2 162 7-176 1154-1348(1381)
377 COG1245 Predicted ATPase, RNas 99.6 1.8E-16 4E-21 131.9 1.9 158 13-178 363-533 (591)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1.1E-17 2.3E-22 129.6 -5.3 82 92-176 110-204 (212)
379 COG1129 MglA ABC-type sugar tr 99.6 3.4E-16 7.4E-21 132.9 2.3 160 11-175 279-475 (500)
380 cd03275 ABC_SMC1_euk Eukaryoti 99.6 5.1E-16 1.1E-20 122.8 2.0 157 19-177 24-234 (247)
381 cd03276 ABC_SMC6_euk Eukaryoti 99.5 4.3E-15 9.3E-20 113.9 3.6 156 13-178 18-192 (198)
382 cd03280 ABC_MutS2 MutS2 homolo 99.5 3.8E-16 8.2E-21 119.9 -4.1 127 10-175 20-164 (200)
383 COG3845 ABC-type uncharacteriz 99.5 6.5E-15 1.4E-19 123.6 2.0 159 11-174 278-476 (501)
384 COG4178 ABC-type uncharacteriz 99.5 2.9E-14 6.2E-19 123.5 3.5 148 7-159 407-572 (604)
385 KOG0054 Multidrug resistance-a 99.4 7.1E-14 1.5E-18 130.2 5.0 148 7-175 535-716 (1381)
386 PRK00635 excinuclease ABC subu 99.4 5.9E-14 1.3E-18 133.6 4.0 83 91-175 790-885 (1809)
387 PRK00349 uvrA excinuclease ABC 99.4 3E-13 6.5E-18 123.5 4.6 82 91-174 811-905 (943)
388 cd03277 ABC_SMC5_euk Eukaryoti 99.4 3.6E-13 7.8E-18 104.4 3.5 79 101-179 118-210 (213)
389 COG1245 Predicted ATPase, RNas 99.3 5.8E-14 1.3E-18 117.2 -2.9 155 14-171 97-283 (591)
390 KOG0066 eIF2-interacting prote 99.3 8.4E-13 1.8E-17 110.2 3.6 150 6-175 600-775 (807)
391 KOG0062 ATPase component of AB 99.3 5.6E-13 1.2E-17 112.5 1.6 162 7-175 378-553 (582)
392 TIGR00630 uvra excinuclease AB 99.3 1.4E-12 3.1E-17 118.9 4.3 84 90-175 808-904 (924)
393 KOG0062 ATPase component of AB 99.3 5.8E-13 1.3E-17 112.4 1.2 140 11-163 100-257 (582)
394 KOG0065 Pleiotropic drug resis 99.3 6.7E-13 1.5E-17 122.1 1.7 157 5-161 803-994 (1391)
395 COG2401 ABC-type ATPase fused 99.3 6.5E-13 1.4E-17 110.0 1.2 165 6-177 396-585 (593)
396 COG4170 SapD ABC-type antimicr 99.3 1E-12 2.3E-17 100.3 2.0 169 7-175 21-233 (330)
397 cd03283 ABC_MutS-like MutS-lik 99.3 7.7E-13 1.7E-17 101.5 1.3 37 5-41 13-49 (199)
398 cd03243 ABC_MutS_homologs The 99.3 6.7E-14 1.5E-18 107.5 -5.8 137 5-174 17-163 (202)
399 cd03239 ABC_SMC_head The struc 99.2 1.2E-12 2.5E-17 98.8 0.3 66 110-177 95-173 (178)
400 KOG0064 Peroxisomal long-chain 99.2 1.4E-11 2.9E-16 104.7 4.2 109 11-125 502-628 (728)
401 cd00820 PEPCK_HprK Phosphoenol 99.2 2.8E-11 6.1E-16 83.5 4.8 45 7-57 3-49 (107)
402 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.7E-11 5.9E-16 102.7 4.8 51 5-57 18-71 (504)
403 cd03241 ABC_RecN RecN ATPase i 99.2 8.4E-12 1.8E-16 100.3 1.5 72 107-181 168-252 (276)
404 KOG0060 Long-chain acyl-CoA tr 99.1 2.1E-11 4.5E-16 104.4 3.3 166 8-177 450-653 (659)
405 TIGR02858 spore_III_AA stage I 99.1 1.1E-11 2.4E-16 99.2 1.4 39 18-56 112-150 (270)
406 KOG0927 Predicted transporter 99.1 8E-12 1.7E-16 106.2 0.1 163 11-176 95-294 (614)
407 cd03227 ABC_Class2 ABC-type Cl 99.1 1.1E-11 2.3E-16 92.1 -1.9 129 11-178 15-157 (162)
408 KOG2355 Predicted ABC-type tra 99.0 1.5E-10 3.2E-15 88.3 2.5 154 7-162 28-209 (291)
409 cd01130 VirB11-like_ATPase Typ 99.0 2.7E-10 5.9E-15 86.4 3.9 42 12-53 20-61 (186)
410 KOG0063 RNAse L inhibitor, ABC 99.0 4.5E-11 9.8E-16 99.4 -0.7 152 16-176 366-532 (592)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.0 1E-11 2.2E-16 96.8 -4.7 133 6-175 17-166 (222)
412 cd03282 ABC_MSH4_euk MutS4 hom 98.9 4.7E-11 1E-15 91.9 -3.5 129 6-166 16-156 (204)
413 PRK09270 nucleoside triphospha 98.8 5.1E-09 1.1E-13 81.9 5.7 35 15-49 31-65 (229)
414 smart00534 MUTSac ATPase domai 98.8 2.9E-11 6.3E-16 91.7 -7.1 119 19-169 1-129 (185)
415 KOG0066 eIF2-interacting prote 98.8 1.5E-09 3.3E-14 91.0 1.0 163 10-176 283-484 (807)
416 PF13555 AAA_29: P-loop contai 98.7 8.8E-09 1.9E-13 64.0 3.4 36 10-45 15-51 (62)
417 PRK09825 idnK D-gluconate kina 98.7 1.3E-08 2.7E-13 76.7 4.1 36 16-55 2-37 (176)
418 PRK06002 fliI flagellum-specif 98.7 1.5E-08 3.2E-13 86.1 4.8 46 7-52 154-200 (450)
419 PRK10078 ribose 1,5-bisphospho 98.7 2.5E-08 5.4E-13 75.6 4.5 37 17-56 2-38 (186)
420 TIGR00235 udk uridine kinase. 98.7 1.7E-08 3.6E-13 77.8 3.5 29 15-43 4-32 (207)
421 PRK00635 excinuclease ABC subu 98.7 2E-08 4.2E-13 96.7 4.2 85 90-178 1679-1776(1809)
422 PRK00300 gmk guanylate kinase; 98.6 2.3E-08 5.1E-13 76.6 3.6 28 15-42 3-30 (205)
423 TIGR00554 panK_bact pantothena 98.6 2.4E-08 5.1E-13 80.7 3.7 40 15-54 60-101 (290)
424 TIGR01069 mutS2 MutS2 family p 98.6 2.2E-09 4.8E-14 97.0 -3.2 121 11-163 315-447 (771)
425 PRK07721 fliI flagellum-specif 98.6 6.5E-08 1.4E-12 82.3 5.7 49 7-55 147-196 (438)
426 cd02023 UMPK Uridine monophosp 98.6 1.3E-07 2.7E-12 72.3 6.2 33 19-53 1-33 (198)
427 TIGR02788 VirB11 P-type DNA tr 98.6 5.4E-08 1.2E-12 79.5 4.1 41 12-52 139-179 (308)
428 cd01136 ATPase_flagellum-secre 98.6 1.1E-07 2.5E-12 77.9 5.7 47 8-54 59-106 (326)
429 PRK10416 signal recognition pa 98.5 6.5E-08 1.4E-12 79.3 3.9 42 15-56 112-153 (318)
430 TIGR03498 FliI_clade3 flagella 98.5 1.1E-07 2.4E-12 80.3 5.2 44 11-54 134-177 (418)
431 PRK07196 fliI flagellum-specif 98.5 1.2E-07 2.5E-12 80.5 4.7 41 8-48 145-186 (434)
432 PRK08149 ATP synthase SpaL; Va 98.5 1.3E-07 2.9E-12 80.0 4.4 50 7-56 140-193 (428)
433 PRK07594 type III secretion sy 98.5 1.6E-07 3.5E-12 79.6 4.6 48 7-54 144-192 (433)
434 COG0178 UvrA Excinuclease ATPa 98.5 1.8E-07 3.9E-12 83.4 4.8 87 90-180 802-901 (935)
435 TIGR02322 phosphon_PhnN phosph 98.5 1.8E-07 3.9E-12 70.2 4.2 34 17-51 1-34 (179)
436 KOG0065 Pleiotropic drug resis 98.5 6.2E-07 1.3E-11 83.7 8.2 113 6-118 128-269 (1391)
437 PRK07960 fliI flagellum-specif 98.4 1.4E-07 3.1E-12 80.1 3.7 49 8-56 165-217 (455)
438 cd02025 PanK Pantothenate kina 98.4 1.3E-07 2.7E-12 73.8 3.1 32 19-50 1-34 (220)
439 PRK09099 type III secretion sy 98.4 3.1E-07 6.7E-12 78.1 5.6 48 7-54 152-200 (441)
440 PRK01889 GTPase RsgA; Reviewed 98.4 1.8E-07 4E-12 77.8 4.0 40 14-53 192-231 (356)
441 PRK05922 type III secretion sy 98.4 3.5E-07 7.6E-12 77.5 5.6 46 8-53 147-193 (434)
442 TIGR01026 fliI_yscN ATPase Fli 98.4 3.4E-07 7.3E-12 78.0 5.3 48 7-54 152-200 (440)
443 TIGR02546 III_secr_ATP type II 98.4 3.4E-07 7.5E-12 77.7 5.2 48 7-54 134-182 (422)
444 cd02026 PRK Phosphoribulokinas 98.4 2.1E-07 4.5E-12 74.8 3.6 33 19-51 1-33 (273)
445 PLN02796 D-glycerate 3-kinase 98.4 2.2E-07 4.7E-12 76.5 3.8 42 15-56 93-142 (347)
446 PRK04863 mukB cell division pr 98.4 3.1E-07 6.8E-12 87.8 5.1 43 11-54 22-64 (1486)
447 cd03287 ABC_MSH3_euk MutS3 hom 98.4 2E-07 4.4E-12 72.7 2.9 45 7-51 19-66 (222)
448 PRK09862 putative ATP-dependen 98.4 4.6E-07 1E-11 78.4 5.2 45 12-56 205-249 (506)
449 PRK06995 flhF flagellar biosyn 98.4 1.5E-07 3.2E-12 80.9 2.1 35 13-47 252-286 (484)
450 TIGR03497 FliI_clade2 flagella 98.4 6.4E-07 1.4E-11 75.8 5.5 49 7-55 126-175 (413)
451 TIGR03496 FliI_clade1 flagella 98.3 7.1E-07 1.5E-11 75.5 5.5 48 7-54 126-174 (411)
452 PRK06793 fliI flagellum-specif 98.3 6.8E-07 1.5E-11 75.8 4.9 47 8-54 146-193 (432)
453 cd04155 Arl3 Arl3 subfamily. 98.3 6.4E-07 1.4E-11 66.3 4.2 36 18-53 15-58 (173)
454 TIGR03263 guanyl_kin guanylate 98.3 5.3E-07 1.1E-11 67.6 3.7 26 17-42 1-26 (180)
455 cd01854 YjeQ_engC YjeQ/EngC. 98.3 5.7E-07 1.2E-11 72.8 3.8 34 17-50 161-194 (287)
456 PRK03846 adenylylsulfate kinas 98.3 6E-07 1.3E-11 68.7 3.7 43 14-56 21-64 (198)
457 PRK00098 GTPase RsgA; Reviewed 98.3 7.6E-07 1.7E-11 72.4 4.4 35 16-50 163-197 (298)
458 PRK05480 uridine/cytidine kina 98.3 8.8E-07 1.9E-11 68.2 4.6 37 15-53 4-40 (209)
459 PRK05688 fliI flagellum-specif 98.3 5.7E-07 1.2E-11 76.6 3.7 38 7-44 157-195 (451)
460 cd03281 ABC_MSH5_euk MutS5 hom 98.3 5.3E-07 1.1E-11 69.9 3.2 41 9-50 19-63 (213)
461 cd03284 ABC_MutS1 MutS1 homolo 98.3 6.1E-07 1.3E-11 69.7 3.5 35 7-41 19-54 (216)
462 cd01128 rho_factor Transcripti 98.3 9.7E-07 2.1E-11 70.0 4.7 42 5-46 3-45 (249)
463 TIGR00606 rad50 rad50. This fa 98.3 7.7E-07 1.7E-11 85.2 4.8 38 18-55 29-71 (1311)
464 PRK14721 flhF flagellar biosyn 98.3 6.9E-07 1.5E-11 75.6 3.4 27 14-40 188-214 (420)
465 PRK14723 flhF flagellar biosyn 98.2 7.5E-07 1.6E-11 80.1 3.6 43 12-54 180-224 (767)
466 PRK08472 fliI flagellum-specif 98.2 1.5E-06 3.2E-11 73.9 5.1 48 8-55 147-195 (434)
467 PLN03046 D-glycerate 3-kinase; 98.2 8.7E-07 1.9E-11 74.6 3.6 38 18-55 213-253 (460)
468 cd04104 p47_IIGP_like p47 (47- 98.2 9.1E-07 2E-11 67.6 3.4 32 20-51 4-35 (197)
469 PRK08972 fliI flagellum-specif 98.2 1.1E-06 2.5E-11 74.5 4.2 37 8-44 152-189 (444)
470 PLN02318 phosphoribulokinase/u 98.2 1.2E-06 2.5E-11 76.7 4.3 36 18-54 66-101 (656)
471 KOG0063 RNAse L inhibitor, ABC 98.2 1.2E-07 2.6E-12 79.4 -2.0 159 14-174 97-286 (592)
472 TIGR01360 aden_kin_iso1 adenyl 98.2 6.8E-07 1.5E-11 67.2 2.0 34 17-50 3-39 (188)
473 cd00879 Sar1 Sar1 subfamily. 98.2 1.7E-06 3.7E-11 65.2 4.1 46 8-54 9-64 (190)
474 PRK06315 type III secretion sy 98.2 1.8E-06 3.9E-11 73.5 4.5 45 8-52 154-200 (442)
475 PRK00889 adenylylsulfate kinas 98.2 1.4E-06 3E-11 65.2 3.5 39 15-53 2-41 (175)
476 TIGR00368 Mg chelatase-related 98.2 2E-06 4.3E-11 74.5 4.8 44 13-56 207-250 (499)
477 PRK06820 type III secretion sy 98.2 3.2E-06 6.9E-11 71.9 5.6 47 7-53 152-199 (440)
478 TIGR02524 dot_icm_DotB Dot/Icm 98.2 2.5E-06 5.4E-11 71.1 4.7 29 15-43 132-160 (358)
479 PRK10463 hydrogenase nickel in 98.2 2.3E-06 5.1E-11 69.0 4.3 41 13-53 100-140 (290)
480 PF03193 DUF258: Protein of un 98.2 2.2E-06 4.8E-11 63.4 3.9 35 16-50 34-68 (161)
481 cd04159 Arl10_like Arl10-like 98.1 1.5E-06 3.3E-11 62.6 2.8 21 20-40 2-22 (159)
482 smart00382 AAA ATPases associa 98.1 4E-06 8.6E-11 58.7 4.8 38 16-53 1-39 (148)
483 TIGR00101 ureG urease accessor 98.1 3.2E-06 6.8E-11 64.9 4.5 36 19-55 3-38 (199)
484 cd01876 YihA_EngB The YihA (En 98.1 1.7E-06 3.6E-11 63.0 2.4 29 20-48 2-32 (170)
485 PF13476 AAA_23: AAA domain; P 98.1 2.3E-06 4.9E-11 64.6 3.3 29 12-41 15-43 (202)
486 cd01131 PilT Pilus retraction 98.1 3.7E-06 7.9E-11 64.4 4.4 37 19-55 3-40 (198)
487 PTZ00132 GTP-binding nuclear p 98.1 4.5E-06 9.9E-11 64.4 4.9 25 19-43 11-36 (215)
488 PRK08533 flagellar accessory p 98.1 3.5E-06 7.5E-11 66.1 4.3 40 14-53 21-61 (230)
489 PRK10751 molybdopterin-guanine 98.1 2.8E-06 6E-11 63.7 3.3 36 18-53 7-45 (173)
490 PLN02165 adenylate isopentenyl 98.1 3E-06 6.5E-11 69.6 3.7 42 15-56 41-86 (334)
491 PRK13851 type IV secretion sys 98.1 4.1E-06 8.9E-11 69.4 4.3 39 14-52 159-197 (344)
492 PRK07429 phosphoribulokinase; 98.1 4.8E-06 1E-10 68.5 4.4 31 19-49 10-40 (327)
493 PRK06936 type III secretion sy 98.0 5.6E-06 1.2E-10 70.4 4.4 38 8-45 152-190 (439)
494 PRK05541 adenylylsulfate kinas 98.0 4.3E-06 9.3E-11 62.6 3.3 42 14-55 4-46 (176)
495 smart00053 DYNc Dynamin, GTPas 98.0 5E-06 1.1E-10 65.6 3.7 32 19-50 28-61 (240)
496 TIGR00150 HI0065_YjeE ATPase, 98.0 6.5E-06 1.4E-10 59.1 3.8 30 14-43 19-48 (133)
497 cd01124 KaiC KaiC is a circadi 98.0 3E-06 6.6E-11 63.6 2.1 82 97-179 59-167 (187)
498 TIGR00017 cmk cytidylate kinas 98.0 3.6E-06 7.8E-11 65.5 2.5 31 19-49 4-37 (217)
499 TIGR01420 pilT_fam pilus retra 98.0 5E-06 1.1E-10 69.0 3.5 44 11-54 116-160 (343)
500 PRK14722 flhF flagellar biosyn 98.0 4.2E-06 9.2E-11 69.9 3.0 31 12-42 132-162 (374)
No 1
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-38 Score=246.79 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=136.9
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---------------cccchheeeh
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---------------SVCSFILIRR 69 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---------------~~~~~~~l~~ 69 (183)
++|+++ ++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+..+.. ..++.++.+.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 689865 58999999999999999999999999999999999999998654310 0122333444
Q ss_pred hhhccCCCCcccccc--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 70 AYFFKLPNLKSICHE--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 70 ~~lg~lp~l~~l~~~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
+.++..+..+.+... .....+.++|+.+++.+++++++.+|||||+|+ ++.+|+.+ ||++..|+..+..
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 444443333222111 112457899999999999999999999999983 58899997 9999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..++.+ .++|+|+|||++.|++.+|+|+||.
T Consensus 178 i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 178 IYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 99999999999 9999999999999999999999996
No 2
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=237.64 Aligned_cols=166 Identities=16% Similarity=0.067 Sum_probs=147.1
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+++|++ ||+|++||++||+|||||||||.+.++.|+.+|++|+|.+++.+++.. +.....++.++|+||-.++|
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~l----Pm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL----PMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccC----ChHHHhhcCcccccccchHh
Confidence 677777 567999999999999999999999999999999999999999999875 45566678899999999988
Q ss_pred ccccch---------------------HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 83 HEALAF---------------------PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 ~~~~~~---------------------~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
...... +..++++.+.+.++++.+..+|||||+|+ ++.+|.++ ||+.+.|
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVD 171 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 753311 13467899999999999999999999982 47899996 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|.+...++.++..++.. .+.|+||+||+++|++.|||+|+|-
T Consensus 172 PiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 172 PIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred chhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEe
Confidence 99999999999999988 9999999999999999999999984
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.9e-35 Score=231.12 Aligned_cols=171 Identities=18% Similarity=0.122 Sum_probs=146.4
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc----------------ccccchhe
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK----------------ISVCSFIL 66 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~----------------~~~~~~~~ 66 (183)
.+++++++ ++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+. .....+++
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 46788855 5899999999999999999999999999999999999999876542 12345667
Q ss_pred eehhhhccCCCCccccccc-c-chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 67 IRRAYFFKLPNLKSICHEA-L-AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 67 l~~~~lg~lp~l~~l~~~~-~-~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.+.+.+|+.|....+.... . ...+.++++.+++.+++++++++|||||+|+ ++.+++.+ ||..+-|...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 8888888888766554221 1 2247788999999999999999999999983 47788876 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+..+++.|+.||++.+.+.||++|.+.
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999998889999999999999999999999986
No 4
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4.3e-34 Score=220.15 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=134.9
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-----------------cccchheeehhhhc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-----------------SVCSFILIRRAYFF 73 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-----------------~~~~~~~l~~~~lg 73 (183)
||++++||++||||||||||||++++|+|+++|++|+|.++|++++... .+...++++++.++
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va 103 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVG 103 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHH
Confidence 5679999999999999999999999999999999999999999877531 11223344444444
Q ss_pred cCCCCc--cccc--------cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e----ecCchhhc---ccccccCcc
Q 036195 74 KLPNLK--SICH--------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V----LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 74 ~lp~l~--~l~~--------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~----i~~~~~w~---~~l~~~d~~ 134 (183)
...+.. ..+. .....+..++++.++|.+.++.+..+||+||+| + ++.+|+.+ ||..+..+.
T Consensus 104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~ 183 (250)
T COG0411 104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183 (250)
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHH
Confidence 322211 1111 111235678899999999999999999999887 3 48899997 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
..+.+..++..++.+...+|+++.||+..||..||||+++|-
T Consensus 184 e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~ 225 (250)
T COG0411 184 ETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY 225 (250)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC
Confidence 999999999999998899999999999999999999999984
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-33 Score=217.40 Aligned_cols=162 Identities=12% Similarity=0.054 Sum_probs=132.8
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
.++|+++ +|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++.... ..++++.|...++
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~----------~~~~~vFQ~~~LlP 85 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG----------PDIGYVFQEDALLP 85 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC----------CCEEEEeccCcccc
Confidence 5788754 69999999999999999999999999999999999999998764321 0111222211111
Q ss_pred ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.......+.++++.+|+....+.++++|||||||+ ++.+|+.+ ||+.=-|.-+
T Consensus 86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 11122357888999999999999999999999983 47788886 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD 177 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (183)
+..++..+..+-.++..++++++||++++...+|||+.+.-.
T Consensus 166 R~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999998643
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=8.9e-33 Score=213.89 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=138.3
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc-------------ccchheeeh-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS-------------VCSFILIRR- 69 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~-------------~~~~~~l~~- 69 (183)
+++++ ||+|++||+++++|||||||||+||||++|+.|++|+|.++|+++.+... ...||.+..
T Consensus 14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~ 93 (309)
T COG1125 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA 93 (309)
T ss_pred ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence 56676 45699999999999999999999999999999999999999998775310 111222221
Q ss_pred hhhccCCCCccccccccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 70 AYFFKLPNLKSICHEALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 70 ~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
..+..+|++..|.+.....++.++++.++++ .++++++++|||||+|+ ++.+|..+ ||+.-.||.++..
T Consensus 94 eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~ 173 (309)
T COG1125 94 ENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173 (309)
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHH
Confidence 1233444444444433344678899999996 48999999999999883 58888886 8999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..|..+......+|.+++||+++.++..||+.++|
T Consensus 174 lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~ 210 (309)
T COG1125 174 LQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD 210 (309)
T ss_pred HHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec
Confidence 9999999999999999999999999999999999887
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=8.1e-32 Score=207.03 Aligned_cols=168 Identities=14% Similarity=0.073 Sum_probs=135.0
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
.+.|++++ +|.+||+++|+||||+|||||||+|.|+++|++|+|.++|.++.+........ -...+|.+.|.+.+|
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~--ir~r~GvlFQ~gALF 97 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE--IRKRMGVLFQQGALF 97 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH--HHhheeEEeeccccc
Confidence 46788855 59999999999999999999999999999999999999999876531110000 011244445554444
Q ss_pred ccccch--------------------HHHHHHHHcCCCCc-cCCCCCCCChhhhh------eecCchhhc---ccccccC
Q 036195 83 HEALAF--------------------PCLERIYVHGCPSL-RKLPFSLESGKRNG------VLIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 ~~~~~~--------------------~~l~vLe~l~L~~L-~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d 132 (183)
.....+ -++.-++.+|+..- .++.+++|||||++ .|+-+|+.+ ||..+-|
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 432211 13455788899877 89999999999987 368899986 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
|.+-..|..+|..++.+...++.|+|||++.+..+||||+.|
T Consensus 178 PI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 178 PISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 999999999999999999999999999999999999999987
No 8
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-31 Score=203.41 Aligned_cols=166 Identities=14% Similarity=0.035 Sum_probs=131.0
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
...||++ ++|++||+++|+||||||||||||+|++|..|++|+|.++|.++.... . ....+..+|.+.|...+|
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~-~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---D-ILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---h-HHHHHHhcCeeccccccc
Confidence 3567885 469999999999999999999999999999999999999997664321 0 000112233333333333
Q ss_pred ccc--------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 83 HEA--------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 ~~~--------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
++. .....++.|+.+|+.+.++.++.+|||||+|+ ++++|+.. ||.+--||
T Consensus 90 PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP 169 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169 (240)
T ss_pred ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH
Confidence 221 11234667888999999999999999999983 48899886 88999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+....+...+..+..+ ..+.++++|++.++...+||||-+|
T Consensus 170 Elv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 170 ELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEee
Confidence 9999999999999888 8999999999999999999999887
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=3.8e-31 Score=213.80 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=135.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||++||+||||||||||+|+|+|+++|++|+|.++|.++... +......++++|+...++.
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~------~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE------PAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC------HHHHHhheEEEccCCCCCc
Confidence 4688854 5999999999999999999999999999999999999999876542 0111134666666554443
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++...+++++.+||+||||+ +..+|+.+ ||....|+..
T Consensus 92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~ 171 (293)
T COG1131 92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171 (293)
T ss_pred cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence 211 1245678999999987789999999999983 48889886 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++||.++++...||+|+.|.
T Consensus 172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~ 211 (293)
T COG1131 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 (293)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence 9999999999999866999999999999999999999885
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.5e-31 Score=209.95 Aligned_cols=169 Identities=16% Similarity=0.049 Sum_probs=134.3
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+.++++ ||+|++||++||||.||||||||+|+|++|.+|++|+|.++|.++........ ...+..++...|...+.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L--r~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL--RQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHH--HHHHhhccEEecccccc
Confidence 345777 56799999999999999999999999999999999999999988764211100 00011222222221111
Q ss_pred c-------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 H-------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~-------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. .....++.++++.+|+++..+.++.+|||||||+ ++.+|+.+ |+.+=-||+
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 1 1112356788999999999999999999999983 48899987 788999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+-.++..++..+..+...+|.|++|.++.|-++||||-++|
T Consensus 176 TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 99999999999999999999999999999999999999987
No 11
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=8.8e-31 Score=212.70 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=130.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++... +......++++++...++.
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------PRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC------HHHHHhhcEEecCCCCCCC
Confidence 467875 56999999999999999999999999999999999999999876431 0000123455554433322
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... .....++++.+++....++++.+|||||+|+ +..+|+.+ ||....|+.+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 100 1135678899999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++||+++++.+.||++++|+
T Consensus 160 ~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~ 198 (302)
T TIGR01188 160 RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIID 198 (302)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 99999999888655 7899999999999999999999996
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=8.9e-31 Score=212.98 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=130.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
..+|++ |+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.... ......++++|+...++.
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~------~~~~~~ig~v~q~~~~~~ 93 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA------RHARQRVGVVPQFDNLDP 93 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch------HHHHhcEEEEeccCcCCC
Confidence 357774 568999999999999999999999999999999999999998765321 001123455554433332
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... .....++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~ 173 (306)
T PRK13537 94 DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173 (306)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHH
Confidence 110 1123467889999999999999999999983 47889887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++||+++++.+.||++++|+
T Consensus 174 ~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~ 212 (306)
T PRK13537 174 RHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIE 212 (306)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 99999999988655 8899999999999999999999997
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=204.23 Aligned_cols=171 Identities=17% Similarity=0.077 Sum_probs=134.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---------cccc-cchhe------e
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---------KISV-CSFIL------I 67 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------~~~~-~~~~~------l 67 (183)
.++++ |+++++||+++|+||||||||||+++++|+++|++|.|.++|.++.. ..++ ++.|. -
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 36776 55699999999999999999999999999999999999999987541 0000 11110 0
Q ss_pred ehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 68 RRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 68 ~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
....+.+-+....+.......++.++++.+++..++++++..|||||||+ ++++|+.| ||...-|+..+..
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 00112222222223332233457789999999999999999999999993 48899986 9999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
+..++..+..+...+++++|||++.+...+||+|.++=
T Consensus 177 l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence 99999999999889999999999999999999999873
No 14
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1e-30 Score=202.19 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=127.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .. ...++++++...++.
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------~~-~~~i~~v~q~~~~~~ 85 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP------PE-RRNIGMVFQDYALFP 85 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc------hh-hccEEEEcCchhhcc
Confidence 467874 568999999999999999999999999999999999999998764310 00 012333333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+|||||+|+ +..+|+.+ ||....|+.+
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~ 165 (213)
T cd03259 86 HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165 (213)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 001134567888999988899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++|||++.+.+.||++++++
T Consensus 166 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 205 (213)
T cd03259 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMN 205 (213)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 9999999988766557899999999999999999999996
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=9e-31 Score=215.48 Aligned_cols=167 Identities=17% Similarity=0.066 Sum_probs=131.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... ... .....++++++...++..
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~-~l~-~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS-ELT-KARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH-HHH-HHhcCEEEEECCcccccc
Confidence 68885 45899999999999999999999999999999999999999876531000 000 001123444433222211
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.....+.++++.+++.++.++++.+|||||+|+ ++.+|+.+ ||....|+.++
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 011235678999999999999999999999983 47888887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+..++|+++||+++.+.+.||+++++|
T Consensus 177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215 (343)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999998887778999999999999999999999997
No 16
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.7e-30 Score=202.05 Aligned_cols=164 Identities=17% Similarity=0.045 Sum_probs=127.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ...++++++...++.
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~ 86 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-----REV-RRRIGIVFQDLSVDD 86 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-----HHH-hhcEEEecCCccccc
Confidence 357774 568999999999999999999999999999999999999997654210 000 012233333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....+.++.+|||||+|+ +..+|+.+ ||+...|+..
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~ 166 (220)
T cd03265 87 ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166 (220)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 0 011235677899999988899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++++...||+++.++
T Consensus 167 ~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 206 (220)
T cd03265 167 RAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID 206 (220)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999998877667899999999999999999999986
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=211.14 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=133.5
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE- 84 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~- 84 (183)
+++ ||+|+.||+++|+||||||||||||+|+||.+|++|+|.|+|+++++.. |.. ..++.+.|...+|++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-----P~~--R~iamVFQ~yALyPhm 90 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-----PEK--RGIAMVFQNYALYPHM 90 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hhH--CCEEEEeCCccccCCC
Confidence 677 4569999999999999999999999999999999999999999887521 111 233444444333332
Q ss_pred ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
....++.++.+.+++.++.++.+.+|||||+|+ |..+|+.. ||++-.|...+.
T Consensus 91 tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~ 170 (338)
T COG3839 91 TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170 (338)
T ss_pred cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHH
Confidence 223356788999999999999999999999983 46777754 889999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.....+..+..+...+++.++||..+.|..+||+.+++
T Consensus 171 ~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe
Confidence 99999999999999999999999999999999999988
No 18
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.3e-30 Score=192.95 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=133.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc--------------ccccchheeehhhhccCC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK--------------ISVCSFILIRRAYFFKLP 76 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~--------------~~~~~~~~l~~~~lg~lp 76 (183)
+++|..||+++|+||||||||||+++|+|+..|.+|+|+++|++.... +.+.-.++.+++.+|.-|
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 677999999999999999999999999999999999999999986532 111122333344444444
Q ss_pred CCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe-------ecCchhhc--ccccccCcccccccccceeecC
Q 036195 77 NLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV-------LIGEEEWW--NQLEWDDEATKHVFSSKLIITT 147 (183)
Q Consensus 77 ~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~-------i~~~~~w~--~~l~~~d~~~~~~~~~~~~~~~ 147 (183)
.++.- ......+..++..+|+..+.++.+.+|||||||+ +..+|-|+ ||+.--||..+.....++..+-
T Consensus 99 ~LkL~--a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 99 GLKLN--AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred ccccC--HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 43311 1112346778889999999999999999999983 36778886 8999999999999999999999
Q ss_pred cccccCCCCCCceeeeeecccceEEEEe
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+...+++|+||+.+.+.++.+|++.+|
T Consensus 177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~ 204 (231)
T COG3840 177 DERKMTLLMVTHHPEDAARIADRVVFLD 204 (231)
T ss_pred HhhCCEEEEEeCCHHHHHHhhhceEEEe
Confidence 9999999999999999999999999998
No 19
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=2.4e-30 Score=212.94 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=129.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ......++++|+...++.
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~------~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA------RLARARIGVVPQFDNLDL 127 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch------HHHhccEEEEeCCccCCC
Confidence 357875 569999999999999999999999999999999999999998765310 001122344443322221
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ......++++.+++....+.++.+||+||+|+ +..+|+++ ||....|+.+
T Consensus 128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 10 01123467888999999999999999999983 47889987 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++||+++++.+.||+|++|+
T Consensus 208 r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~ 246 (340)
T PRK13536 208 RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE 246 (340)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 99999999988665 8899999999999999999999996
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=212.12 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=133.6
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++++ ||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++.... +. ...++.+.|...+|+
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp-----p~--kR~ig~VFQ~YALFP 90 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-----PE--KRPIGMVFQSYALFP 90 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hh--hcccceeecCcccCC
Confidence 46677 5569999999999999999999999999999999999999999887521 11 123333333333333
Q ss_pred cc--------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 EA--------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~~--------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+. ....+.++++.+++..+.++++++|||||+|+ ++.+|..+ ||++-.|..
T Consensus 91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 21 12256788999999999999999999999983 47788775 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|..++.-+..+..+..++.++++||-++.|..+||+.+..
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc
Confidence 99999999999999999999999999999999999998753
No 21
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=2.7e-30 Score=216.31 Aligned_cols=169 Identities=13% Similarity=0.074 Sum_probs=129.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc--------cc--------cchhee
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI--------SV--------CSFILI 67 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~--------~~--------~~~~~l 67 (183)
+++|++ |++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... .+ ..++..
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 467875 458999999999999999999999999999999999999998765310 00 111112
Q ss_pred ehhhhccCCCCcccc--ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 68 RRAYFFKLPNLKSIC--HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 68 ~~~~lg~lp~l~~l~--~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
+.+.+++.+....+. .......+.++++.+++..+.++++.+||+||+|+ ++.+|+.+ ||....|+..+
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 222222211111111 00112245788999999999999999999999983 47889987 99999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+ ..+|+|+|||++.+.+.|||+++|+
T Consensus 176 ~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l~ 213 (402)
T PRK09536 176 VRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLA 213 (402)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999999988754 7899999999999999999999997
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.5e-30 Score=212.76 Aligned_cols=163 Identities=12% Similarity=0.075 Sum_probs=131.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.... + ....+++++|...++.
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-----~--~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-----I--QQRDICMVFQSYALFP 91 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCcccCC
Confidence 35677 5569999999999999999999999999999999999999998765310 0 1123344444333332
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~ 171 (351)
T PRK11432 92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANL 171 (351)
T ss_pred CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 10 11235678889999999999999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||.+++++.||++++++
T Consensus 172 r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~ 211 (351)
T PRK11432 172 RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN 211 (351)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 9999999998877778999999999999999999999997
No 23
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.6e-30 Score=199.54 Aligned_cols=160 Identities=12% Similarity=0.048 Sum_probs=126.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++...++.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----------~~i~~v~q~~~~~~ 86 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG----------PDRGYVFQQDALLP 86 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccc----------CcEEEEeccccccc
Confidence 468875 568999999999999999999999999999999999999997654210 01122222111110
Q ss_pred -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
........++++.+++....++++.+|||||+|+ ++.+|+++ ||....|+.+
T Consensus 87 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 166 (220)
T cd03293 87 WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166 (220)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHH
Confidence 0011235678899999888899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++||+++++.+.||++++++
T Consensus 167 ~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 167 REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999987765557899999999999999999999996
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-30 Score=212.65 Aligned_cols=163 Identities=11% Similarity=0.021 Sum_probs=131.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.... + ....+++++|...++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-----~--~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-----P--ADRDIAMVFQNYALYP 89 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCccccC
Confidence 35777 5569999999999999999999999999999999999999998765310 0 0123444444333332
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~ 169 (356)
T PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL 169 (356)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 10 01235678999999999999999999999983 47888887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||++++++
T Consensus 170 r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~ 209 (356)
T PRK11650 170 RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN 209 (356)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999998877778999999999999999999999986
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-30 Score=198.36 Aligned_cols=159 Identities=17% Similarity=0.090 Sum_probs=128.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+........ .+......+||+
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~----------~~~~~VQmVFQD 90 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK----------AFYRPVQMVFQD 90 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch----------hhccceeEEecC
Confidence 57875 568999999999999999999999999999999999999997665421100 001111112221
Q ss_pred c-------------------------cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 85 A-------------------------LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 85 ~-------------------------~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
+ ...++.++++.++++ ..+++.+++|||||+|+ +..+|+.+ |+++
T Consensus 91 p~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptS 170 (252)
T COG1124 91 PYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170 (252)
T ss_pred CccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchh
Confidence 1 011267889999997 47889999999999984 36788886 8899
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
--|..++..+..++..++.++..+.+++|||+.++...|||+++.|
T Consensus 171 aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee
Confidence 9999999999999999999999999999999999999999999987
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=4.9e-30 Score=212.12 Aligned_cols=163 Identities=11% Similarity=0.081 Sum_probs=133.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ +|++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.... + ....+++++|...+++
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-----~--~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-----P--QKRDYGIVFQSYALFP 89 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCcccCC
Confidence 34677 5668999999999999999999999999999999999999998775310 1 0123444444433332
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|...
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~ 169 (353)
T TIGR03265 90 NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARV 169 (353)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 10 11235678999999999999999999999983 47888887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+..++++++|||.+++++.||++++++
T Consensus 170 r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~ 209 (353)
T TIGR03265 170 REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN 209 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 9999999998877778999999999999999999999997
No 27
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-30 Score=203.91 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=129.9
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCCccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++++ +++|+.||.+|++||||||||||||+|+||..|++|.|.++|+ |.++. ......+|++.|...+
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~-------~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL-------AVRDRKVGFVFQHYAL 88 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc-------chhhcceeEEEechhh
Confidence 4555 5569999999999999999999999999999999999999998 54431 0011223333322222
Q ss_pred ccc---------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 CHE---------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ~~~---------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
|.. ....++.+.++.+.++.+.++++.+|||||+|+ ++-+|+.+ ||+.--
T Consensus 89 F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL 168 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168 (345)
T ss_pred cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence 211 112346778999999999999999999999983 36778775 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|...+..+...+..+......+++++|||.+++++.+|||..+.
T Consensus 169 Da~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred hHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec
Confidence 99999999999999999999999999999999999999999874
No 28
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.8e-30 Score=192.65 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=136.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc----------------cccccchhee
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK----------------KISVCSFILI 67 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----------------~~~~~~~~~l 67 (183)
+.+++ ||++.+||+.+|+||||||||||||.++|-+.|++|++.++|.++.. ....++|++.
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~ 93 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence 45666 55689999999999999999999999999999999999999987543 2234778888
Q ss_pred ehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------------cCchhhc---ccccccC
Q 036195 68 RRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------------IGEEEWW---NQLEWDD 132 (183)
Q Consensus 68 ~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------------~~~~~w~---~~l~~~d 132 (183)
+.+.+|+.|....-.......-..++|+..+|..+..+...+|||||+|++ ..++.|+ ||.+-.|
T Consensus 94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 888899888654322111122257889999999999999999999998732 2334464 7888889
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...++....+...+..+ ..+++.+-|||+.+-..|||++|+-
T Consensus 174 i~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~ 215 (259)
T COG4559 174 IAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLH 215 (259)
T ss_pred hHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeee
Confidence 88888888888877777 5999999999999999999999974
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.4e-30 Score=200.22 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=127.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ... .....++++++...++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-~~~-~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA-ELY-RLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh-hHH-HHhcceEEEccCcccCC
Confidence 457875 56999999999999999999999999999999999999999765421000 000 00012333333221111
Q ss_pred c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. .......++++.+++....++++.+|||||+|+ +..+|+.+ ||....|+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 0 001124567889999988899999999999983 37788887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus 171 ~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 99999999988766557899999999999999999999996
No 30
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=8.4e-30 Score=197.70 Aligned_cols=168 Identities=15% Similarity=0.021 Sum_probs=126.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK-ELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh-HHHHHHhhcEEEEeeccccCC
Confidence 468875 56899999999999999999999999999999999999999866421000 000000012233333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+||+||+|+ ++.+|+.+ ||....|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 0 001235678889999988899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++|||++++. .||+++.++
T Consensus 176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~ 214 (218)
T cd03255 176 GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR 214 (218)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee
Confidence 999999999886645789999999999986 999999986
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.3e-29 Score=195.72 Aligned_cols=168 Identities=18% Similarity=0.053 Sum_probs=128.1
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|+ +|+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++..... ......+...+|++.|...+.+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~-~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE-KELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH-HHHHHHHHHhEEEECccCCCCC
Confidence 46787 55699999999999999999999999999999999999999987764211 0112233344555544333322
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccC-CCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRK-LPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~-~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
... .....++++.+++.+..+ .++.+|||||+|+ +..+|+.+ ||..--|..
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 211 112456678889985555 8899999999984 36777776 889999998
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+-..+..++..+..+...+++|++||.+..- .|||+|-+-
T Consensus 177 t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~ 216 (226)
T COG1136 177 TAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELK 216 (226)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEe
Confidence 8899999999998888999999999988765 899998763
No 32
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=7.9e-30 Score=211.12 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=132.6
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++ ||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........+++++|...++.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~-~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-HHHHHHhCcEEEEECCCcCCC
Confidence 45677 556999999999999999999999999999999999999999877532100 000001123444444433332
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
+. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+.+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 10 11235678999999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..++..+..+..+...+|+++|||++++++.||+++.++
T Consensus 165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~ 204 (363)
T TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK 204 (363)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999998876668899999999999999999999986
No 33
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=1.1e-29 Score=206.36 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=127.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ......++++++...++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~~~~i~~v~q~~~~~~ 90 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA------RLARVAIGVVPQFDNLDP 90 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH------HHHhhcEEEEeccccCCc
Confidence 357875 569999999999999999999999999999999999999998654210 000112333333222211
Q ss_pred c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. . ......++++.+++....++++.+|||||+|+ +..+|+++ ||....|+..
T Consensus 91 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 91 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 0 0 01123467888999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus 171 ~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~ 209 (303)
T TIGR01288 171 RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE 209 (303)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 99999999887654 7899999999999999999999996
No 34
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.1e-29 Score=196.40 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=126.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ...++++++...++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~------~-~~~i~~~~q~~~~~~ 85 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP------K-DRDIAMVFQNYALYP 85 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc------c-cceEEEEecChhhcc
Confidence 367875 4589999999999999999999999999999999999999987642100 0 012223222211111
Q ss_pred -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
........++++.+++....+.++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 165 (213)
T cd03301 86 HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165 (213)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0001134567888999888999999999999983 36788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++++...||+++.++
T Consensus 166 ~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~ 205 (213)
T cd03301 166 RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN 205 (213)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 9999999988876667899999999999999999999985
No 35
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=1.3e-29 Score=196.39 Aligned_cols=167 Identities=11% Similarity=0.003 Sum_probs=127.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGR-EIPF-LRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChh-HHHH-HHHhceEEecCccccc
Confidence 357875 56899999999999999999999999999999999999999876421000 0000 0012333333322211
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+|||||+|+ +..+|+.+ ||+...|+..
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 173 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPEL 173 (216)
T ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 1 011235667899999998999999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus 174 ~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 174 SRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999877554 7889999999999999999999985
No 36
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1e-29 Score=196.34 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=126.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l 81 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....++++++... +
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~~~ 88 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS----LKE-LRRKVGLVFQNPDDQF 88 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC----HHH-HHhhceEEecChhhhc
Confidence 4678754 58999999999999999999999999999999999999997654210 000 0012233332210 1
Q ss_pred cc-----c-------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 CH-----E-------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~~-----~-------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+. + .......++++.+++....++++.+|||||+|+ ++.+|+.+ ||+...|+.
T Consensus 89 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 168 (211)
T cd03225 89 FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168 (211)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 10 0 001134567888999888899999999999983 47788887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++.....+ .++++++|||++++.+.||++++++
T Consensus 169 ~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~ 208 (211)
T cd03225 169 GRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLE 208 (211)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999877665 7899999999999999999999986
No 37
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-29 Score=195.54 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=124.3
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH------- 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~------- 83 (183)
||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ...++++++...++.
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~-------~~~i~~~~q~~~~~~~~tv~en 90 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA-------DRPVSMLFQENNLFAHLTVEQN 90 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHh-------HccEEEEecccccCCCCcHHHH
Confidence 678999999999999999999999999999999999999999865421000 001122221111110
Q ss_pred ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
........++++.+++....+.++.+||+||+|+ +..+|+++ ||+...|+..+..+..+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~ 170 (211)
T cd03298 91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170 (211)
T ss_pred HhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0011235678899999988899999999999983 37788887 99999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++|+++|||++.+...||++++++
T Consensus 171 l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 203 (211)
T cd03298 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD 203 (211)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE
Confidence 998766668899999999999999999999986
No 38
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1.2e-29 Score=196.90 Aligned_cols=162 Identities=12% Similarity=0.020 Sum_probs=127.5
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ...++++++...++..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~~ 92 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP-----AEA-RRRLGFVSDSTGLYDR 92 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH-----HHH-HhhEEEecCCcccCcC
Confidence 68875 568999999999999999999999999999999999999998764210 000 1123333333222211
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.......++++.+++....++++.+||+||+|+ +..+|+++ ||....|+..+
T Consensus 93 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 172 (218)
T cd03266 93 LTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172 (218)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHH
Confidence 001234668899999999999999999999983 47888887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+ ..+++++|||.+.+...+|+++.++
T Consensus 173 ~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~ 210 (218)
T cd03266 173 RALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLH 210 (218)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 9999999887544 7899999999999999999999985
No 39
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=2.4e-29 Score=204.19 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=128.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+.+|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ......++++|+...++.
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~------~~~~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP------KEVQRNIGYLPEHNPLYL 88 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh------HHHHhceEEecCCCCCCC
Confidence 357775 569999999999999999999999999999999999999998764310 000123444454433322
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ......++++.+++....++++..||+||+|+ +..+|+.+ ||..+.|+.+
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~ 168 (301)
T TIGR03522 89 DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ 168 (301)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 10 01235667888999999999999999999983 48888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+.. ..+|+++||+++++.+.||++++|+
T Consensus 169 ~~~l~~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~ 206 (301)
T TIGR03522 169 LVEIRNVIKNIGK--DKTIILSTHIMQEVEAICDRVIIIN 206 (301)
T ss_pred HHHHHHHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 9999999988854 4899999999999999999999996
No 40
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=1.4e-29 Score=210.60 Aligned_cols=162 Identities=9% Similarity=0.072 Sum_probs=131.0
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ +|++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.... +. ...+++++|...++..
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-----~~--~r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-----AE--NRHVNTVFQSYALFPH 100 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----HH--HCCEEEEecCcccCCC
Confidence 5677 5679999999999999999999999999999999999999998764310 00 1223333333322221
Q ss_pred c-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 A-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 ~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
. ......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|...+
T Consensus 101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r 180 (375)
T PRK09452 101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180 (375)
T ss_pred CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 0 01234677889999999999999999999983 47788887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+...+..+..+..++++++|||.+++++.+|++++++
T Consensus 181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~ 219 (375)
T PRK09452 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR 219 (375)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999998888778999999999999999999999986
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=1.7e-29 Score=209.29 Aligned_cols=162 Identities=13% Similarity=0.089 Sum_probs=130.1
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS--HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
++|++ |++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.++.... + ....++++++...++
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-----~--~~r~ig~vfQ~~~l~ 91 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-----P--HKRGLALLFQNYALF 91 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-----H--HHCCEEEEECCcccC
Confidence 57775 5689999999999999999999999999999999 99999998764310 0 011233333332222
Q ss_pred cc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 HE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
.. .....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+.
T Consensus 92 p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~ 171 (362)
T TIGR03258 92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171 (362)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 11 011235678999999999999999999999983 47788886 899999999
Q ss_pred cccccccceeecCccc-ccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQT-VISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+...+..+..+. ..+++++|||++++++.||+++.++
T Consensus 172 ~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~ 213 (362)
T TIGR03258 172 IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK 213 (362)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999887775 7899999999999999999999996
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-29 Score=210.12 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=129.6
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... + ....++++++...++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-----~--~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-----P--AERGVGMVFQSYALYP 88 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----H--hHCCEEEEeCCcccCC
Confidence 35777 4568999999999999999999999999999999999999998764310 0 0012333333322221
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 89 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~ 168 (369)
T PRK11000 89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1 001235678899999999999999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||++++++
T Consensus 169 ~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~ 208 (369)
T PRK11000 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208 (369)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999988776667899999999999999999999997
No 43
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=9.4e-30 Score=199.23 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=123.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---ccc-----c---hheeehhhhccCCCCc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SVC-----S---FILIRRAYFFKLPNLK 79 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~~-----~---~~~l~~~~lg~lp~l~ 79 (183)
||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .+. . .+..+.+.+.......
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999999999998764311 000 0 0111111110000000
Q ss_pred cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccc
Q 036195 80 SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT 150 (183)
Q Consensus 80 ~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~ 150 (183)
............++++.+++....++++.+|||||+|+ +..+|+++ ||....|+..+..+..++..+..+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 00000001124677888999988899999999999983 37788887 9999999999999999998776655
Q ss_pred ccCCCCCCceeeeeecccceEEEEe
Q 036195 151 VISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+|+++|||++.+.+.||++++++
T Consensus 165 ~~tii~~sH~~~~~~~~~d~v~~l~ 189 (230)
T TIGR01184 165 RVTVLMVTHDVDEALLLSDRVVMLT 189 (230)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 7899999999999999999999996
No 44
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.5e-30 Score=196.44 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=136.8
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-------------------cccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-------------------SVCS 63 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-------------------~~~~ 63 (183)
.+++|+ +|+|++||+++||||||||||||||+|+|+..|++|+|.++|.++.+.. ....
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 356777 4569999999999999999999999999999999999999998765421 1122
Q ss_pred hheeehhhhccCCCC---cccccccc---chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 64 FILIRRAYFFKLPNL---KSICHEAL---AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 64 ~~~l~~~~lg~lp~l---~~l~~~~~---~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
.++++.+..+++... .+++..+. ....+++++.+|+.+.+-++.++|||||+|+ +..+|+.+ ||+
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 334444444444332 23333222 2347889999999999999999999999983 36778876 999
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...||.+-..+..++..+..+..+++++..|+++.+.+.|+|+|.|+
T Consensus 176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred cccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 99999888888889999999989999999999999999999999986
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.7e-29 Score=208.31 Aligned_cols=168 Identities=17% Similarity=0.074 Sum_probs=129.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~-~~~~-~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK-ELRK-ARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-HHHH-HhcCEEEEeCCCccCC
Confidence 467875 56999999999999999999999999999999999999999876431000 0000 0112344443322221
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~ 175 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1 001134567889999999999999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus 176 ~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~ 215 (343)
T PRK11153 176 TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID 215 (343)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999998876668899999999999999999999996
No 46
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=3.9e-29 Score=194.20 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=125.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ....++++++...++.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~-~~~~i~~v~q~~~~~~ 88 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-----KA-ARQSLGYCPQFDALFD 88 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-----HH-HhhhEEEecCcCCccc
Confidence 4688754 59999999999999999999999999999999999999998764310 00 0012233333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....+.++.+||+||+|+ ++.+|+.+ ||+...|+..
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 168 (220)
T cd03263 89 ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168 (220)
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence 0 001234577888999888899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++...... .+++++||+++.+.+.||+++.++
T Consensus 169 ~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03263 169 RRAIWDLILEVRKG--RSIILTTHSMDEAEALCDRIAIMS 206 (220)
T ss_pred HHHHHHHHHHHhcC--CEEEEEcCCHHHHHHhcCEEEEEE
Confidence 99999999877643 789999999999999999999986
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=3.5e-29 Score=195.92 Aligned_cols=165 Identities=18% Similarity=0.089 Sum_probs=125.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ........++++++...++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP----MHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC----HhHHHhccEEEecCCccccc
Confidence 357875 568999999999999999999999999999999999999998653210 00000011233333221111
Q ss_pred c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. . ......++++.+++....+.++.+||+||+|+ +..+|+.+ ||+...|+..
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 168 (232)
T cd03218 89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 1 0 01124567888999988999999999999983 37788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus 169 ~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~ 207 (232)
T cd03218 169 VQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIY 207 (232)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999877654 6789999999999999999999996
No 48
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.5e-29 Score=192.39 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=134.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
..+|+ ||++++||+++|+|+||||||||||+|+|+.+|.+|+|.++|++++.. ++.......++++|+-+.+|.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~----p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL----PPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC----CHHHHHhCCeEeCcccccchh
Confidence 34665 567999999999999999999999999999999999999999999864 334455567888888777776
Q ss_pred cccchH------------------HHHHHHHc-CCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCccc
Q 036195 84 EALAFP------------------CLERIYVH-GCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~~~~------------------~l~vLe~l-~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~ 135 (183)
.....+ ..++.+.+ .+.+.++++..+|||||+| .++++|+.+ ||.++--|.+
T Consensus 92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~i 171 (237)
T COG0410 92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171 (237)
T ss_pred hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHH
Confidence 533222 22233333 2456788999999999998 358889886 8888888888
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+...+..+..+...+|+.+.+|.+.++..+||.|+++
T Consensus 172 v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 8888888888888778999999999999999999999987
No 49
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.95 E-value=3.2e-29 Score=207.26 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=129.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... + ....+++++|...++..
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~i~~v~Q~~~l~p~ 88 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-----A--RDRKVGFVFQHYALFRH 88 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-----H--HHCCEEEEecCcccCCC
Confidence 57774 568999999999999999999999999999999999999998764310 0 00122232222211110
Q ss_pred -----------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 -----------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 -----------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.......++++.+++..+.++++.+|||||+|+ +..+|+.+ ||+...|
T Consensus 89 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD 168 (353)
T PRK10851 89 MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168 (353)
T ss_pred CcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 011245678999999999999999999999983 47888887 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+...+..+..+...+++++|||++++++.||+++.++
T Consensus 169 ~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~ 211 (353)
T PRK10851 169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211 (353)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999998887778999999999999999999999997
No 50
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=2.5e-29 Score=197.26 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=125.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP----HEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH----HHHHhcCEEEEeccccccc
Confidence 357774 5689999999999999999999999999999999999999986542100 0000011222222111110
Q ss_pred -----------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 84 -----------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 84 -----------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
........++++.+++....+.++.+|||||+|+ +..+|+++
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 168 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD 168 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0001135677888999988899999999999983 47788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+..+ ..+++++|||++.+...||++++++
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~ 217 (236)
T cd03219 169 EPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLD 217 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 899999999999999999877654 7889999999999999999999996
No 51
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-29 Score=197.24 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=127.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++...++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-A-LRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh-H-HHHHHhccEEEcccCcccc
Confidence 467875 56999999999999999999999999999999999999999865421000 0 0000011222222111110
Q ss_pred ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
......+.++++.+++....+.++.+||+||+|+ ++.+|+.+ ||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 171 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0011234567888999988899999999999983 47788887 99
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
....|+..+..+...+..+..+...+|+++|||++.+.+.||++++++
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999988766557899999999999999999999996
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.4e-29 Score=196.98 Aligned_cols=163 Identities=11% Similarity=0.011 Sum_probs=125.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ...++++++...++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-----~--~~~i~~v~q~~~~~~ 87 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-----Q--ERNVGFVFQHYALFR 87 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-----c--ccceEEEecCCcccC
Confidence 467875 5689999999999999999999999999999999999999976542100 0 011222222111110
Q ss_pred ---------------------c--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 ---------------------E--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ---------------------~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. .......++++.+++..+.+.++.+||+||+|+ +..+|+.+ ||+...
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 88 HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 0 001124567888999988899999999999983 46788887 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 211 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN 211 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999988766557899999999999999999999996
No 53
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5e-29 Score=206.26 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=128.8
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL---- 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~---- 86 (183)
||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.........+. ....++++++...++....
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~en 96 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPP-EKRRIGYVFQDARLFPHYKVRGN 96 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccch-hhCCEEEEcCCcccCCCCcHHHH
Confidence 67799999999999999999999999999999999999999987642100000000 0123455555433332111
Q ss_pred ---------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195 87 ---------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 87 ---------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
.....++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+..++..+..
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1235678899999999999999999999983 47788886 89999999999999999988877
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...+++++|||++++++.||+++.++
T Consensus 177 ~~g~tii~vTHd~~~~~~~~d~i~~l~ 203 (352)
T PRK11144 177 EINIPILYVSHSLDEILRLADRVVVLE 203 (352)
T ss_pred hcCCeEEEEecCHHHHHHhCCEEEEEe
Confidence 667899999999999999999999996
No 54
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.9e-29 Score=198.28 Aligned_cols=166 Identities=8% Similarity=0.023 Sum_probs=125.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG----HQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH----HHHHhcCeEEeccCcccCC
Confidence 357774 4689999999999999999999999999999999999999986542100 0000001111111110000
Q ss_pred --------------------------------c--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh
Q 036195 84 --------------------------------E--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE 123 (183)
Q Consensus 84 --------------------------------~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~ 123 (183)
. .....+.++++.+++..+.+.++.+||+||+|+ +..+|+
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 173 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE 173 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 001134566888999989999999999999983 477888
Q ss_pred hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+ ||+...|+..+..+..++..+..+...+|+++||+++.+...||++++|+
T Consensus 174 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 87 89999999999999999998876667899999999999999999999997
No 55
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=4.5e-29 Score=196.58 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=126.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK-KLRK-LRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHH-HHHH-HHhheEEEcCCCcccc
Confidence 357874 56899999999999999999999999999999999999999765421000 0000 0011222222111110
Q ss_pred ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
......+.++++.+++....++++.+|||||+|+ +..+|+.+ ||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0011235677888999988899999999999983 37788886 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
....|+..+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 999999999999999988766557899999999999999999999996
No 56
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.7e-29 Score=193.11 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=125.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++ +|++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++++...++.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------~~~~i~~~~q~~~~~~ 83 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---------ARNRIGYLPEERGLYP 83 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHH---------HHccEEEeccCCcCCc
Confidence 35776 556999999999999999999999999999999999999999865320 0011222222111111
Q ss_pred -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
........++++.+++....+.++.+||+||+|+ ++.+|+.+ ||....|+..
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 84 KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 0011235677888999888899999999999983 36788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++.....+ ..+++++||+++.+...||++++++
T Consensus 164 ~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~ 202 (210)
T cd03269 164 VELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLN 202 (210)
T ss_pred HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEe
Confidence 99999999877655 6899999999999999999999985
No 57
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=3.5e-29 Score=192.62 Aligned_cols=161 Identities=16% Similarity=0.069 Sum_probs=125.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++++++.. .+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------~~~~i~~~~q~~~~~~ 84 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE--------RRKSIGYVMQDVDYQL 84 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHH--------hhcceEEEecChhhhh
Confidence 467875 568999999999999999999999999999999999999998753210 000112222211 00
Q ss_pred c------------c--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 82 C------------H--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 82 ~------------~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
+ . ........++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+..+..
T Consensus 85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 164 (205)
T cd03226 85 FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164 (205)
T ss_pred hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence 0 0 0011245778999999999999999999999983 36788887 9999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..++.....+ ..+++++|||++.+.+.||++++++
T Consensus 165 l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~ 200 (205)
T cd03226 165 VGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLA 200 (205)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999887654 7889999999999999999999986
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.3e-29 Score=197.84 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=125.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .++++++...++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----------~~~~v~q~~~~~~ 83 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA----------ERGVVFQNEGLLP 83 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCC----------cEEEEeCCCccCC
Confidence 357775 5699999999999999999999999999999999999999987642100 011111111110
Q ss_pred ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.........++++.+++....++++.+|||||+|+ +..+|+.+ ||....|+..
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 84 WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 00011235678899999988899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++.+...||++++++
T Consensus 164 ~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 164 REQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999987754447889999999999999999999996
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=6.1e-29 Score=193.25 Aligned_cols=168 Identities=15% Similarity=0.060 Sum_probs=125.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSN-ERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHh-HHHHHHHhcEEEEecccccCC
Confidence 357875 56899999999999999999999999999999999999999876431000 000000012333333322221
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .....+.++++.+++....++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 1 001124567888999988899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++++. .+|++++++
T Consensus 177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~ 215 (221)
T TIGR02211 177 AKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMK 215 (221)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEe
Confidence 999999998876655789999999999875 579999996
No 60
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=8.8e-29 Score=194.30 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=124.8
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. ...++++++...++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~----~~--~~~i~~~~q~~~~~~ 87 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR----AA--LARLGVVFQQPTLDL 87 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh----hh--hhhEEEeCCCCCCcc
Confidence 4678754 589999999999999999999999999999999999999986643100 00 012333333221110
Q ss_pred c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. . ......++++.+++....+.++.+||+||+|+ ++.+|+.+ ||....|+..
T Consensus 88 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 167 (236)
T TIGR03864 88 DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167 (236)
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 0 0 01134567888999988899999999999983 37788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++.+.. ||++++++
T Consensus 168 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~ 206 (236)
T TIGR03864 168 RAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH 206 (236)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe
Confidence 9999999987765457889999999999965 99999996
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.6e-29 Score=194.54 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=128.3
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK-ELRK-ARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH-HHHH-HHhheEEEccCcccCCC
Confidence 68875 56899999999999999999999999999999999999999876421000 0000 01123333333222211
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.......++++.+++..+.++++.+||+||+|+ +..+|+.+ ||+...|+..+
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence 001134667888999999999999999999883 36788876 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+...+++++||+++.+.+.||+++.++
T Consensus 177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999998776667899999999999999999999985
No 62
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-29 Score=208.63 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=128.8
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE- 84 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~- 84 (183)
+|+ ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... .........++++++...++..
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~-~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA-ELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHH-HHHHHHhCCEEEEECCCcCCCCC
Confidence 566 556999999999999999999999999999999999999999876431000 0000001123444443322221
Q ss_pred ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
.......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+.++.
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 001234678899999999999999999999983 47788887 999999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++..+..+..+...+|+++|||++++.+.||++++++
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 99999988766567899999999999999999999986
No 63
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.2e-29 Score=207.00 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=129.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ +|++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.... + ....+++++|...++..
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~vfQ~~~lfp~ 105 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-----P--YQRPINMMFQSYALFPH 105 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCCccCCC
Confidence 5677 5669999999999999999999999999999999999999998764310 1 11234444443333321
Q ss_pred cc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 AL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 ~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.. .....++++.+++..+.++++.+|||||+|+ ++.+|+++ ||+...|...+
T Consensus 106 ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r 185 (377)
T PRK11607 106 MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR 185 (377)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 10 1234678889999999999999999999983 47888887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+...+..+..+...+++++|||.+++++.+|+++.++
T Consensus 186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~ 224 (377)
T PRK11607 186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN 224 (377)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe
Confidence 999888877766667899999999999999999999986
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.5e-29 Score=195.72 Aligned_cols=165 Identities=13% Similarity=0.080 Sum_probs=127.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++...++.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~ 88 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD----PVEL-RRKIGYVIQQIGLFP 88 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC----hHHh-hcceEEEccCccccC
Confidence 45777 4568999999999999999999999999999999999999998654210 0000 112333333322221
Q ss_pred c-------------------ccchHHHHHHHHcCCCC--ccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPS--LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~--L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
. .......++++.+++.. +.+.++.+||+||+|+ +..+|+.+ ||+...|+
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 168 (242)
T cd03295 89 HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168 (242)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 0 00123467788999986 7899999999999983 47788887 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+...+..+..+...+++++||+++.+.+.||+++.|+
T Consensus 169 ~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999988876657899999999999999999999986
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=6.1e-29 Score=191.66 Aligned_cols=162 Identities=17% Similarity=0.061 Sum_probs=127.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... .. ....++++++...++.
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~~-~~~~i~~~~q~~~~~~ 85 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------IE-ALRRIGALIEAPGFYP 85 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch------HH-HHhhEEEecCCCccCc
Confidence 367774 56899999999999999999999999999999999999999876421 00 0112333333322221
Q ss_pred c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
. .......++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.++..+
T Consensus 86 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 165 (208)
T cd03268 86 NLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165 (208)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 1 011235667899999988999999999999983 47788887 99999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..++.....+ ...++|+|||++++...||+++.++
T Consensus 166 ~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~ 200 (208)
T cd03268 166 RELILSLRDQ-GITVLISSHLLSEIQKVADRIGIIN 200 (208)
T ss_pred HHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEE
Confidence 9999877653 7889999999999999999999996
No 66
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-29 Score=201.39 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=128.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |++.+||++||+||||||||||+++|+|+++|++|+|.++|.++..... .... ....++++++.. .++
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~-~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLSD-IRKKVGLVFQYPEYQLF 97 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHHH-HhhceEEEecCchhccc
Confidence 58885 5689999999999999999999999999999999999999987643100 0000 011233333321 011
Q ss_pred c------------------cccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 83 H------------------EALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 ~------------------~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
. ......+.++++.+++. .+.++++.+|||||+|+ ++.+|+.+ ||....|+
T Consensus 98 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 98 EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177 (287)
T ss_pred cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence 0 00012356789999997 67899999999999983 47788886 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+..+...+|+++|||++++.+.|||++.++
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~ 219 (287)
T PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN 219 (287)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999998876668899999999999999999999996
No 67
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=6.8e-29 Score=197.38 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=124.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++...++.
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----------~~i~~v~q~~~l~~ 94 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR----------EDTRLMFQDARLLP 94 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhh----------CceEEEecCccCCC
Confidence 357774 568999999999999999999999999999999999999886542110 01222222211111
Q ss_pred -------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195 84 -------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 84 -------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
........++++.+++....+.++.+|||||+|+ +..+|+.+ ||....|+..+..+..
T Consensus 95 ~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 174 (257)
T PRK11247 95 WKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD 174 (257)
T ss_pred CCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0011245678899999988899999999999983 36778876 8999999999999999
Q ss_pred ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 142 KLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..+...+++++|||++.+.+.||++++++
T Consensus 175 ~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~ 208 (257)
T PRK11247 175 LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE 208 (257)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9987755557899999999999999999999996
No 68
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=6.3e-29 Score=192.22 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=124.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---cccccc----------hheeehh
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---KISVCS----------FILIRRA 70 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---~~~~~~----------~~~l~~~ 70 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+.+ .+..+.+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 357774 5689999999999999999999999999999999999999976531 111000 0111111
Q ss_pred hhccCCCCcc--ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 71 YFFKLPNLKS--ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 71 ~lg~lp~l~~--l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
.......... ...........++++.+++....++++.+|||||+|+ +..+|+.+ ||....|+..+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 171 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1111000000 0000112245678899999888899999999999983 46788887 89999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+.....+ ..+++++|||++++.+.||+++.++
T Consensus 172 ~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~ 206 (213)
T cd03235 172 YELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLN 206 (213)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEc
Confidence 9999887654 7889999999999999999999986
No 69
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9e-29 Score=197.89 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=127.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK-ELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh-hhhhhhcCcEEEEecCcccCC
Confidence 346774 56899999999999999999999999999999999999999865421000 000000012334443322221
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+||+||+|+ +..+|+.+ ||+...|+.+
T Consensus 116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 1 001134567888999988999999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus 196 ~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~ 235 (269)
T cd03294 196 RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK 235 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 9999999988765557899999999999999999999996
No 70
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.1e-29 Score=194.06 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=124.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH------- 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~------- 83 (183)
||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...... ...++++++...++.
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------~~~i~~~~q~~~~~~~~tv~e~ 91 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-------RRPVSMLFQENNLFSHLTVAQN 91 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh-------hccEEEEecccccccCCcHHHH
Confidence 678999999999999999999999999999999999999999875421000 011222222111110
Q ss_pred ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
......+.++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.++..+..+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~ 171 (232)
T PRK10771 92 IGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171 (232)
T ss_pred HhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0011235678899999989999999999999983 47788776 89999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+...+++++|||++.+...||++++++
T Consensus 172 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 204 (232)
T PRK10771 172 VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA 204 (232)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 988766667899999999999999999999996
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=8.4e-29 Score=191.57 Aligned_cols=167 Identities=13% Similarity=0.017 Sum_probs=126.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-QLPL-LRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH-HHHH-HHhheEEEecChhhcc
Confidence 357875 56999999999999999999999999999999999999999876421000 0000 0012233333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+||+||+|+ ++.+|+.+ ||....|+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 0 001234567888999888889999999999983 37788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++||+++++...||++++++
T Consensus 173 ~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 173 SERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEec
Confidence 99999999987554 7899999999999999999999986
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=9.4e-29 Score=197.77 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=126.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..... ...++++++...++.
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~~~-~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS-RLYTV-RKRMSMLFQSGALFT 97 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChh-hHHHH-hhcEEEEecccccCC
Confidence 35777 556999999999999999999999999999999999999999765421000 00000 011222222211111
Q ss_pred c----------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 E----------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~----------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. . ......++++.+++....++++.+|||||+|+ ++.+|+++ ||+...|+.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 177 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177 (269)
T ss_pred CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 0 0 01124457888999988999999999999983 37788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+...+|+++|||++.+.+.||++++++
T Consensus 178 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 178 TMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA 218 (269)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE
Confidence 99999999988766657899999999999999999999986
No 73
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=1.1e-28 Score=204.48 Aligned_cols=164 Identities=14% Similarity=0.073 Sum_probs=126.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------ 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------ 84 (183)
+|++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........+. ....++++++...++..
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~en 95 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPP-EKRRIGYVFQEARLFPHLSVRGN 95 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccch-hhCCeEEEecCCccCCCCcHHHH
Confidence 67799999999999999999999999999999999999999987642100000000 01123333332222211
Q ss_pred -----------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195 85 -----------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI 144 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~ 144 (183)
.......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+...+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLE 175 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 001135678899999999999999999999983 47788887 8999999999999999999
Q ss_pred ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 145 ITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+...+++++|||++++...||++++++
T Consensus 176 ~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~ 206 (354)
T TIGR02142 176 RLHAEFGIPILYVSHSLQEVLRLADRVVVLE 206 (354)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 8877667899999999999999999999996
No 74
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=8.3e-29 Score=206.07 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=128.1
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec----CccccccccchheeehhhhccCCCCcc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV----SLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~----~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
.+++ ||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++..... ..........++++++...
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~-~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDA-ATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCH-HHHHHHhcCCEEEEECCCc
Confidence 3455 5679999999999999999999999999999999999999985 3321100 0000000012333333322
Q ss_pred cccc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 81 ICHE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 81 l~~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
++.. .......++++.+++....+.++.+|||||+|+ ++.+|+.+ ||+...|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 2211 011235678999999999999999999999983 47788887 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.++..++..+..+..+...+|+++|||++++++.||++++++
T Consensus 197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~ 239 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIME 239 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999998877668999999999999999999999996
No 75
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8e-29 Score=200.18 Aligned_cols=169 Identities=17% Similarity=0.087 Sum_probs=128.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........... ....++++++.. .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP-LRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH-HHhhEEEEeeCchhhh
Confidence 3588855 599999999999999999999999999999999999999987642100000000 001223333221 01
Q ss_pred cc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 82 CH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 82 ~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
+. ......+.++++.+++. .+.++++.+||+||+|+ ++.+|+.+ ||....|+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 10 00112356788899996 67899999999999983 47888887 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++..+..++..+..+...+|+++|||++++.+.||||++|+
T Consensus 179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999988877668899999999999999999999996
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=1e-28 Score=190.90 Aligned_cols=166 Identities=13% Similarity=0.001 Sum_probs=126.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .... ....++++++...++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKK--NINE-LRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccch--hHHH-HHhcceEEecccccCC
Confidence 357775 5689999999999999999999999999999999999999986632100 0000 0012333333221111
Q ss_pred c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. .......++++.+++....++++.+||+||+|+ ++.+|+.+ ||....|+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 169 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 0 011134667888999888899999999999983 47788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+++++||+++.+.+.||++++++
T Consensus 170 ~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 170 LVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999987654 6889999999999999999999996
No 77
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=1.2e-28 Score=191.78 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=125.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR-EVPF-LRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChh-HHHH-HHhheEEEecCccccc
Confidence 357775 56899999999999999999999999999999999999999866421000 0000 0012233333221110
Q ss_pred c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. . ....+.++++.+++....++++.+||+||+|+ +..+|+.+ ||+...|+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 0 0 01124567888999888899999999999983 36788886 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++|||++++...||+++.++
T Consensus 173 ~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 173 SEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999887654 6899999999999999999999997
No 78
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-28 Score=199.32 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=126.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.......... .....++++++.. .++
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK-KLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH-HHHhceEEEEeChhhhhc
Confidence 58885 569999999999999999999999999999999999999998763210000000 0001122222211 010
Q ss_pred -----c-------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 -----H-------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 -----~-------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. ......+.++++.+++. .+.++++.+||+||+|+ ++.+|+.+ ||....|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 0 00112356778899997 68899999999999983 47788887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++|||++.+.+.||+++.|+
T Consensus 180 ~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~ 219 (287)
T PRK13641 180 GRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE 219 (287)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999887544 7899999999999999999999997
No 79
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.7e-29 Score=186.87 Aligned_cols=158 Identities=15% Similarity=0.057 Sum_probs=127.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------ 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------ 84 (183)
||++++||++||+|||||||||+||+|++++.|++|.|+++|.+.... |......++-++.-..+|..
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~------p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD------PSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC------hHHHhhhcceecCCcChhhhhhHHHH
Confidence 667999999999999999999999999999999999999999987653 22122233333322222221
Q ss_pred -------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 85 -------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 85 -------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
....+..++.+.+++.+..++++..+|-|+||+ +.-+|..+ ||..+.|..+...|..+
T Consensus 96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~df 175 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF 175 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHH
Confidence 112245678889999999999999999999983 35566665 89999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..++.+ .+.|+..||.+.++-+.||+||.|-
T Consensus 176 i~q~k~e-gr~viFSSH~m~EvealCDrvivlh 207 (245)
T COG4555 176 IKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred HHHhhcC-CcEEEEecccHHHHHHhhheEEEEe
Confidence 9999887 8999999999999999999999984
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.3e-29 Score=198.94 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=127.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++.. .+
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~~~~ 92 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN----EKWV-RSKVGLVFQDPDDQV 92 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----HHHH-HhhEEEEecChhhhh
Confidence 357875 568999999999999999999999999999999999999998764310 0000 01223333221 00
Q ss_pred cc------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 CH------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+. ........++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 172 (274)
T PRK13647 93 FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172 (274)
T ss_pred ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 00 0011235677889999999999999999999983 47888887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+ ..+|+++|||++++.+.|||++.++
T Consensus 173 ~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~ 212 (274)
T PRK13647 173 GQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLK 212 (274)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999888655 8899999999999999999999985
No 81
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=1.5e-28 Score=193.07 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=125.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCC-CCcccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLP-NLKSIC 82 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp-~l~~l~ 82 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ....+++++ +...++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-----~~-~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-----KK-FLRRIGVVFGQKTQLW 107 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-----hh-hcccEEEEcCCccccC
Confidence 3578754 58999999999999999999999999999999999999987643210 00 001122221 111111
Q ss_pred c-------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 H-------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~-------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. ........++++.+++.+..+.++.+||+||+|+ ++.+|+.+ ||....|+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 0 0001124567888899888899999999999983 47788887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+...+|+++||+.+++...||++++++
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999998766557899999999999999999999995
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-28 Score=194.17 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=125.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++...++.
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----~~~~-~~~i~~~~q~~~~~~ 90 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID----VIDL-RRKIGMVFQQPHLFE 90 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----hHHh-hhcEEEEecCchhch
Confidence 357774 468999999999999999999999999999999999999998754210 0000 012223232211111
Q ss_pred --------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 84 --------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 84 --------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
........++++.+++. .+.++++.+||+||+|+ +..+|+.+ ||....|+..+..+
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (241)
T PRK14250 91 GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170 (241)
T ss_pred hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 00112356778889996 57889999999999983 36778776 89999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+..+..+...+|+++|||++.+.+.||+++.++
T Consensus 171 ~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~ 206 (241)
T PRK14250 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206 (241)
T ss_pred HHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe
Confidence 999988766557899999999999999999999997
No 83
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=7e-29 Score=187.51 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=121.8
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~~~-~~~i~~~~q------- 80 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS----PKEL-ARKIAYVPQ------- 80 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----HHHH-HHHHhHHHH-------
Confidence 57764 568999999999999999999999999999999999999998764310 0000 012333222
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
+++.+++....+.++.+||+||+|+ +..+|+.+ ||....|+..+..+..++..+..+...+++
T Consensus 81 --------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii 152 (180)
T cd03214 81 --------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred --------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 7888899888888999999999983 47788876 899999999999999999887665568999
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++||+++++.+.||+++.++
T Consensus 153 i~sh~~~~~~~~~d~~~~l~ 172 (180)
T cd03214 153 MVLHDLNLAARYADRVILLK 172 (180)
T ss_pred EEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999986
No 84
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-28 Score=198.92 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=127.9
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|+++ +|++||++||+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++.. .++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP-VRKRIGMVFQFPESQLF 99 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH-HHhheEEEecChHhccc
Confidence 588855 589999999999999999999999999999999999999987642100000000 011233333321 111
Q ss_pred c------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 H------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. ......+.++++.+++. ...+.++.+|||||+|+ ++.+|+.+ ||....|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 0 00112346778889996 68889999999999983 47888887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus 180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~ 220 (286)
T PRK13646 180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK 220 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999998876668999999999999999999999996
No 85
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-28 Score=189.02 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=124.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ...++++++...++.
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~ 85 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-----QKL-RRRIGYLPQEFGVYP 85 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-----HHH-HhheEEecCCCcccc
Confidence 357875 568999 99999999999999999999999999999999998764310 000 112333333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++..+.+.++.+||+||+|+ +..+|+.+ ||....|+..
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 165 (211)
T cd03264 86 NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165 (211)
T ss_pred cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 001134567888999888899999999999983 47788886 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ .+++++|||++.+.+.+|++++++
T Consensus 166 ~~~l~~~l~~~~~~--~tii~vsH~~~~~~~~~d~i~~l~ 203 (211)
T cd03264 166 RIRFRNLLSELGED--RIVILSTHIVEDVESLCNQVAVLN 203 (211)
T ss_pred HHHHHHHHHHHhCC--CEEEEEcCCHHHHHHhCCEEEEEE
Confidence 99999999887653 789999999999999999999997
No 86
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=1.8e-28 Score=189.82 Aligned_cols=158 Identities=10% Similarity=0.036 Sum_probs=123.7
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH------- 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~------- 83 (183)
||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ...++++++...++.
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~------~-~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP------Y-QRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh------h-ccceEEEeccCccCCCCcHHHH
Confidence 56799999999999999999999999999999999999999987542100 0 011222222111110
Q ss_pred ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
........++++.+++..+.++++.+||+||+|+ +..+|+.+ ||....|+.++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 170 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 0011235668899999988999999999999983 47788887 89999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+...+++++||+++.+...||+++.++
T Consensus 171 l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~ 203 (213)
T TIGR01277 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVS 203 (213)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE
Confidence 998876657899999999999999999999985
No 87
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=1.5e-28 Score=191.03 Aligned_cols=165 Identities=14% Similarity=0.029 Sum_probs=123.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++.+||++||+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP----HERARAGIGYVPEGRRIFP 88 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH----HHHHhcCeEEeccccccCC
Confidence 357775 5689999999999999999999999999999999999999976542100 0000112334443322221
Q ss_pred cc-----------------cchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 84 EA-----------------LAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 84 ~~-----------------~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.. ......++++.+ ++....+.++.+||+||+|+ +..+|+.+ ||....|+..+
T Consensus 89 ~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 168 (222)
T cd03224 89 ELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 168 (222)
T ss_pred CCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 10 011234566666 46777889999999999983 36677776 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+.. ...+++++|||++.+.+.||++++++
T Consensus 169 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 169 EEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 999999987755 37899999999999999999999986
No 88
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=3.1e-28 Score=191.78 Aligned_cols=164 Identities=12% Similarity=-0.023 Sum_probs=124.4
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE----HQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH----HHHHhcCeeEeccccccCC
Confidence 35777 45689999999999999999999999999999999999999986542100 0000011222222111110
Q ss_pred ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
........++++.+++....+.++.+||+||+|+ +..+|+.+ ||
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEP 170 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0011235677888999988899999999999983 47788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
....|+..+..+..++..+.. ..+++++||+++.+...||+++.++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 171 VAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLH 216 (242)
T ss_pred ccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999999999999999987754 3799999999999999999999996
No 89
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=1.2e-28 Score=197.04 Aligned_cols=165 Identities=15% Similarity=0.059 Sum_probs=125.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .......++++++... +
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~~i~~v~q~~~~~~ 100 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD-----YSYRSQRIRMIFQDPSTSL 100 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc-----hhhHhccEEEEecCchhhc
Confidence 368875 568999999999999999999999999999999999999998764210 0000011222222210 0
Q ss_pred c--------------------ccccchHHHHHHHHcCC-CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 C--------------------HEALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ~--------------------~~~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
+ .......+.++++.+++ +...+.++.+||+||+|+ +..+|+.+ ||+...
T Consensus 101 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L 180 (267)
T PRK15112 101 NPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL 180 (267)
T ss_pred CcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 0 00011235678899999 467888899999999983 36778876 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+...+..+..+...+|+++||+++.+...||+++.|+
T Consensus 181 D~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 224 (267)
T PRK15112 181 DMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH 224 (267)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 99999999999998776667899999999999999999999996
No 90
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=2.1e-28 Score=191.13 Aligned_cols=167 Identities=13% Similarity=-0.019 Sum_probs=124.8
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE-ARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH-HHHHHHhheEEEEEcccccCCC
Confidence 47875 56899999999999999999999999999999999999999865431000 0000000122333332211110
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.......++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+..+
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 001234667889999988899999999999983 47788887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+...+|+++|||++++ ..||+++.++
T Consensus 183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~ 220 (228)
T PRK10584 183 DKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLV 220 (228)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence 9999999887666678999999999987 5599999985
No 91
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=1.7e-28 Score=191.85 Aligned_cols=166 Identities=14% Similarity=0.021 Sum_probs=125.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP----HERARAGIAYVPQGREIFP 88 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH----HHHHHhCeEEeccCCcccC
Confidence 367874 5689999999999999999999999999999999999999976543100 0000112344444332222
Q ss_pred ccc----------------chHHHHHHHHcC-CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 84 EAL----------------AFPCLERIYVHG-CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 84 ~~~----------------~~~~l~vLe~l~-L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
... .....++++.++ +....+.++.+||+||+|+ +..+|+.+ ||....|+..+.
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~ 168 (230)
T TIGR03410 89 RLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168 (230)
T ss_pred CCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 100 011245566665 5677889999999999983 36788887 899999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..++.....+...+++++||+++.+.+.||+++.++
T Consensus 169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999988766557899999999999999999999986
No 92
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-28 Score=191.42 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=124.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... .........++++++...++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA-AKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH-HHHHHHhccEEEEecCcccCC
Confidence 357874 56899999999999999999999999999999999999999876421000 000000012333333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++..+.+.++.+|||||+|+ +..+|+++ ||+...|+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 0 011235678899999988899999999999983 37788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++++... ++++.++
T Consensus 181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~ 219 (233)
T PRK11629 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMR 219 (233)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEE
Confidence 99999999877654578999999999998775 6888774
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.8e-28 Score=191.80 Aligned_cols=166 Identities=15% Similarity=0.047 Sum_probs=125.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . .......++++++...++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV--D-ERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh--h-HHHHhhceEEEecccccCC
Confidence 467875 5689999999999999999999999999999999999999987642100 0 0000011222222211110
Q ss_pred --------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 --------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 --------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
......+.++++.+++....++++.+||+||+|+ +..+|+.+ ||+...|+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0011134678889999888899999999999983 36778876 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus 171 ~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 171 LRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999887654 7889999999999999999999996
No 94
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=2e-28 Score=189.35 Aligned_cols=167 Identities=13% Similarity=0.028 Sum_probs=126.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR-AIPY-LRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-HHHH-HHHheEEEecCchhcc
Confidence 357875 45899999999999999999999999999999999999999866421000 0000 0012333333221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....+.++.+||+||+|+ +..+|+.+ ||+...|+..
T Consensus 92 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 171 (214)
T cd03292 92 DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 1 001234567888899888899999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++||+.+.+...||+++.++
T Consensus 172 ~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 172 TWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999887655 7899999999999999999999986
No 95
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-28 Score=196.80 Aligned_cols=167 Identities=14% Similarity=0.039 Sum_probs=125.1
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|+++ +|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++........... ....++++++.. .++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP-VRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH-HHhhEEEEecCcchhcc
Confidence 478754 599999999999999999999999999999999999999987631000000000 001223333221 111
Q ss_pred c------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 H------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. ......+.++++.+++. .+.++++..|||||+|+ ++.+|+.+ ||....|+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0 00112356678889995 58899999999999983 37788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 179 ~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~ 218 (288)
T PRK13643 179 ARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLE 218 (288)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999877654 7899999999999999999999986
No 96
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.7e-28 Score=194.72 Aligned_cols=165 Identities=18% Similarity=0.076 Sum_probs=125.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc--
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI-- 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l-- 81 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++...+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~ 98 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS----KAF-ARKVAYLPQQLPAAE 98 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH----HHH-hhheEEeccCCCCCC
Confidence 357774 5689999999999999999999999999999999999999976532100 000 0011111111000
Q ss_pred ---------------------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 ---------------------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ---------------------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
..........++++.+++....++++.+|||||+|+ +..+|+.+ ||+...
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~L 178 (265)
T PRK10575 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178 (265)
T ss_pred CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 000011235678889999888899999999999983 47788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+..++..+..+...+|+++||+++.+.+.||+++.++
T Consensus 179 D~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~ 222 (265)
T PRK10575 179 DIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222 (265)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999998876657899999999999999999999996
No 97
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-28 Score=194.65 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=125.6
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-- 82 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-- 82 (183)
++|+ ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ... ...++++++...++
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS----KEV-ARRIGLLAQNATTPGD 95 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH----HHH-hhheEEeeccCcCCCC
Confidence 5777 45689999999999999999999999999999999999999986542100 000 00122222211110
Q ss_pred ---------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 83 ---------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 ---------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.........++++.+++....++++.+||+||+|+ +..+|+.+ ||..+.|
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 00011234678888999888899999999999983 47788887 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus 176 ~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 218 (265)
T PRK10253 176 ISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR 218 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999988766557899999999999999999999986
No 98
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-28 Score=183.25 Aligned_cols=170 Identities=14% Similarity=0.046 Sum_probs=139.0
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc----------------cccchhe
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI----------------SVCSFIL 66 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~----------------~~~~~~~ 66 (183)
.++|+++ +++++|.+++|||||||||||||.++++|+++++|+|+++|.++.... -...+++
T Consensus 13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV 92 (252)
T COG4604 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTV 92 (252)
T ss_pred CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEH
Confidence 4577874 568999999999999999999999999999999999999999876421 1134455
Q ss_pred eehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 67 IRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 67 l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
.+.+.+|++|....-........+.++++.+++..+.++..++|||||+|+ ++.+.++. |||---|...-.
T Consensus 93 ~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv 172 (252)
T COG4604 93 RDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172 (252)
T ss_pred HHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHH
Confidence 566677888766544333333357889999999999999999999999992 36677775 889888887777
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
..-+.+..+..+...+|.++-||.+++-..+|+++.+
T Consensus 173 ~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAl 209 (252)
T COG4604 173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL 209 (252)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeee
Confidence 7778888888899999999999999999999999876
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-28 Score=196.60 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=126.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... ...++++++.. .++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~~~~~ 92 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN----IREV-RKFVGLVFQNPDDQIF 92 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC----HHHH-HhheEEEecCcccccc
Confidence 47875 568999999999999999999999999999999999999998764210 0000 01122222211 000
Q ss_pred -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
+ ........++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 93 SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0 0001235677899999999999999999999983 47888887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++||+++.+.+.||+++.|+
T Consensus 173 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~ 212 (277)
T PRK13652 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999988776657899999999999999999999985
No 100
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-28 Score=196.16 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=126.3
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++.. .++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~-~~~i~~v~q~~~~~~~ 95 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV----WDI-RHKIGMVFQNPDNQFV 95 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HHH-HhhceEEEcChHHhcc
Confidence 47875 4589999999999999999999999999999999999999987643100 000 01122222211 000
Q ss_pred ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.......+.++++.+++..+.++++.+||+||+|+ ++.+|+.+ ||....|+.+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 00011235778999999999999999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++|||++.+ ..|||++.++
T Consensus 176 ~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~ 214 (279)
T PRK13650 176 RLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK 214 (279)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence 99999999988776689999999999998 5899999996
No 101
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=3.5e-28 Score=189.63 Aligned_cols=167 Identities=16% Similarity=0.032 Sum_probs=124.2
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++.. .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-L-RKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh-h-HHHhhccEEEEecCchhhcC
Confidence 67875 56899999999999999999999999999999999999999876431000 0 000001222222221 000
Q ss_pred ------c----------ccc---chH--HHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 83 ------H----------EAL---AFP--CLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 83 ------~----------~~~---~~~--~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ... ... ..++++.+++. .+.+.++.+||+||+|+ +..+|+.+ ||+...
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L 176 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 0 000 001 13567888885 57889999999999983 47788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+...+..+..+...+|+++|||++.+.+.||+++.|+
T Consensus 177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 220 (228)
T cd03257 177 DVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220 (228)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 99999999999988766557899999999999999999999986
No 102
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=1.9e-28 Score=191.23 Aligned_cols=167 Identities=17% Similarity=0.073 Sum_probs=124.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---ccc-chheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SVC-SFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~~-~~~~l~~~~lg~lp~l~ 79 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .+. ..+..+.+.+... ..
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~--~~ 112 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGR--LL 112 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHH--Hc
Confidence 567875 569999999999999999999999999999999999999987643110 000 0111111111100 00
Q ss_pred cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccc
Q 036195 80 SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT 150 (183)
Q Consensus 80 ~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~ 150 (183)
............++++.+++....+.++.+||+||+|+ +..+|+.+ ||+...|+.++..+...+.....+
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~- 191 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ- 191 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-
Confidence 00001111234667888899998999999999999983 37788887 899999999999999999877655
Q ss_pred ccCCCCCCceeeeeecccceEEEEe
Q 036195 151 VISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+|+++||+++.+...||++++++
T Consensus 192 ~~tiii~sH~~~~~~~~~d~i~~l~ 216 (224)
T cd03220 192 GKTVILVSHDPSSIKRLCDRALVLE 216 (224)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 7789999999999999999999996
No 103
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.94 E-value=3.4e-28 Score=189.85 Aligned_cols=165 Identities=15% Similarity=0.007 Sum_probs=123.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-----SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++..... .... ....++++++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV--DVLE-LRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch--HHHH-HHhhEEEEecC
Confidence 357875 568999999999999999999999999999 9999999999987542100 0000 00112222222
Q ss_pred ccccc--------------c--c---cchHHHHHHHHcCCCCccCCC--CCCCChhhhhe------ecCchhhc---ccc
Q 036195 79 KSICH--------------E--A---LAFPCLERIYVHGCPSLRKLP--FSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 79 ~~l~~--------------~--~---~~~~~l~vLe~l~L~~L~~~~--~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
..++. . . ......++++.+++....+.+ +.+|||||+|+ +..+|+.+ ||.
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 169 (227)
T cd03260 90 PNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169 (227)
T ss_pred chhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11110 0 0 112346678889998776666 59999999983 47788887 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...|+..+..+..++..+..+ .+++++|||++.+.+.||+++.|+
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~ 214 (227)
T cd03260 170 SALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLL 214 (227)
T ss_pred ccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEe
Confidence 999999999999999988665 889999999999999999999986
No 104
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=3.8e-28 Score=192.52 Aligned_cols=166 Identities=14% Similarity=0.081 Sum_probs=122.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-cccc-ccccchheeehhhhccCCCCccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-LQKK-ISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~~~~-~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|+ +|++++||+++|+||||||||||+++|+|+++|++|+|.+++.. +.-. .....++.+. ..+.. ....
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~-~~~~~---~~~~ 92 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-LTVNR---FLRL 92 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC-hhHHH---HHhc
Confidence 35777 45689999999999999999999999999999999999997632 1000 0000000000 00000 0000
Q ss_pred cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
..........++++.+++..+.+.++.+||+||+|+ +..+|+++ ||....|+..+..+..++..+..+...
T Consensus 93 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ 172 (251)
T PRK09544 93 RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC 172 (251)
T ss_pred cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 011112345778899999999999999999999983 47788887 899999999999999998877665578
Q ss_pred CCCCCCceeeeeecccceEEEEe
Q 036195 153 SIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++++|||++.+.+.||+++.++
T Consensus 173 tiiivsH~~~~i~~~~d~i~~l~ 195 (251)
T PRK09544 173 AVLMVSHDLHLVMAKTDEVLCLN 195 (251)
T ss_pred EEEEEecCHHHHHHhCCEEEEEC
Confidence 99999999999999999999985
No 105
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=4.3e-28 Score=209.07 Aligned_cols=165 Identities=10% Similarity=-0.033 Sum_probs=125.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|+ ||++.+||++||+||||||||||+|+|+|+++|++|+|.++|.++..... .......++++++...++
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP----KSSQEAGIGIIHQELNLIP 92 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHhCCEEEEEcchhccC
Confidence 35787 55689999999999999999999999999999999999999976532100 000000112222111000
Q ss_pred ------------------c----cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 83 ------------------H----EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 83 ------------------~----~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ......+.++++.+++....++++.+|||||+|+ +..+|+.+ ||+..-
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 172 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCC
Confidence 0 0001235678999999998999999999999983 47788887 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+ ..+++++|||++.+...||++++|+
T Consensus 173 D~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~ 215 (501)
T PRK10762 173 TDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFR 215 (501)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999888654 7889999999999999999999996
No 106
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.8e-28 Score=197.42 Aligned_cols=167 Identities=14% Similarity=0.045 Sum_probs=126.6
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc------------cc--------cch
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI------------SV--------CSF 64 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~------------~~--------~~~ 64 (183)
++|++ |+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+..... .. ...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 48875 568999999999999999999999999999999999999876542100 00 000
Q ss_pred heeehhhhccCCCCc--cccc-----c-------------ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------
Q 036195 65 ILIRRAYFFKLPNLK--SICH-----E-------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------ 117 (183)
Q Consensus 65 ~~l~~~~lg~lp~l~--~l~~-----~-------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------ 117 (183)
.. ....++++++.. .++. + .....+.++++.+++. .+.++++.+|||||+|+
T Consensus 101 ~~-~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 101 KE-IRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HH-HHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 00 012344444421 1111 0 0112357789999996 78999999999999983
Q ss_pred ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 118 LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 118 i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++.+|+.+ ||....|+..+..+..++..+..+ ..+|+|+|||++.+.+.|||++.++
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 47788887 899999999999999999888744 8899999999999999999999985
No 107
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.1e-28 Score=199.64 Aligned_cols=168 Identities=14% Similarity=0.016 Sum_probs=128.7
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
.++++ ||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...... ..... ...+++++|.. .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~-~~~~~-r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPE-AQKLL-RQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHH-HHHHH-hCCEEEEEcCchhhc
Confidence 35777 456899999999999999999999999999999999999999876432000 00000 01233333321 01
Q ss_pred cc--------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 CH--------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ~~--------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
.. ......+.++++.+++. ...++++.+|||||+|+ ++.+|+.+ ||....
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~L 185 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence 00 00112357789999996 47788999999999983 47889887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|...+..+..++..+..+...+++++|||++.+.+.||+|+.++
T Consensus 186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~ 229 (327)
T PRK11308 186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY 229 (327)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999998877778999999999999999999999986
No 108
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=5e-28 Score=193.15 Aligned_cols=168 Identities=14% Similarity=-0.019 Sum_probs=126.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++.. .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK-QRRA-FRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH-HHHH-HhhceEEEecChhhhc
Confidence 468875 56899999999999999999999999999999999999999866421000 0000 001123333321 01
Q ss_pred cc--------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 CH--------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ~~--------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
+. ........++++.+++. .+.+.++.+||+||+|+ +..+|+.+ ||+...
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 10 00112356788899996 67889999999999983 37788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+...+|+++|||++.+...||++++|+
T Consensus 182 D~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~ 225 (265)
T TIGR02769 182 DMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD 225 (265)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence 99999999999988776657899999999999999999999996
No 109
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.9e-28 Score=195.16 Aligned_cols=167 Identities=12% Similarity=0.019 Sum_probs=124.3
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++.. .++
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ-IRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH-HHhheEEEeeChhhhhc
Confidence 57875 5689999999999999999999999999999999999999986542100000000 001223333321 111
Q ss_pred c-----c---------c----cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 83 H-----E---------A----LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~-----~---------~----~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. + . ......++++.+++. .+.++++.+||+||+|+ ++.+|+++ ||....|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0 0 0 011235667888997 57789999999999983 47788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++||+++.+.+.||++++|+
T Consensus 180 ~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~ 219 (280)
T PRK13649 180 GRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLE 219 (280)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEE
Confidence 999999999877654 7899999999999999999999996
No 110
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.7e-28 Score=187.50 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=123.8
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------ 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------ 84 (183)
+|++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++...++..
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP-QQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhh-HhhcEEEEecCCccCCCCCHHHH
Confidence 567999 9999999999999999999999999999999999976532100000000 01123333333222211
Q ss_pred -----------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195 85 -----------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI 144 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~ 144 (183)
.......++++.+++....+.++.+||+||+|+ ++.+|+.+ ||....|+.++..+..++.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 001134567888999888899999999999983 47788887 8999999999999999998
Q ss_pred ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 145 ITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+...+++++|||++++...||++++++
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (214)
T cd03297 176 QIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206 (214)
T ss_pred HHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 8866657889999999999999999999986
No 111
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=6.1e-28 Score=192.01 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=124.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|++ |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++...++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~ 89 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP----AEL-ARRRAVLPQHSSLSF 89 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----HHh-hhheEEEccCCcCCC
Confidence 457875 5689999999999999999999999999999999999999976532100 000 01122222211110
Q ss_pred -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ec------Cchhhc---cccc
Q 036195 83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LI------GEEEWW---NQLE 129 (183)
Q Consensus 83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~------~~~~w~---~~l~ 129 (183)
. ........++++.+++....+.++.+|||||+|+ ++ .+|+++ ||+.
T Consensus 90 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~ 169 (258)
T PRK13548 90 PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTS 169 (258)
T ss_pred CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcc
Confidence 0 0001234667888999988899999999999983 24 378887 8999
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+..+..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 215 (258)
T PRK13548 170 ALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 9999999999999988763447899999999999999999999986
No 112
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6e-28 Score=190.06 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=124.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL----HARARRGIGYLPQEASIFR 91 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHHhCeEEeccCCcccc
Confidence 35776 55699999999999999999999999999999999999999976542100 0000011222222211111
Q ss_pred --------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 --------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 --------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
........++++.+++....+.++.+||+||+|+ +..+|+.+ ||....|+.
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0001235667888899888899999999999983 36788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ...++++||+++.+.+.||++++|+
T Consensus 172 ~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v~~l~ 211 (241)
T PRK10895 172 SVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVS 211 (241)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 999999888877654 7899999999999999999999996
No 113
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.2e-28 Score=194.06 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=126.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
+++++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .... ....++++++.. .++
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK--SLLE-VRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc--hHHH-HHhheEEEeeChhhhhc
Confidence 47774 5699999999999999999999999999999999999999987631100 0000 001223332221 000
Q ss_pred c------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 H------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. ........++++.+++..+.++++.+||+||+|+ ++.+|+.+ ||....|+.+
T Consensus 93 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 172 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172 (275)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 0 0011235678899999999999999999999983 47788876 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 173 ~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 173 ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999988655 8899999999999999999999985
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.94 E-value=6.2e-28 Score=191.20 Aligned_cols=170 Identities=11% Similarity=-0.047 Sum_probs=127.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---c---c-cch-heeehhhhccC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---S---V-CSF-ILIRRAYFFKL 75 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~---~-~~~-~~l~~~~lg~l 75 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... . . ... .......++++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 457764 568999999999999999999999999999999999999998663210 0 0 000 00000123333
Q ss_pred CCCcccccc--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 76 PNLKSICHE--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 76 p~l~~l~~~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
++...++.. .......++++.+++..+.+.++.+||+||+|+ +..+|+.+ |
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 332211110 011234677888999888899999999999883 36788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|+..+..+..++..+..+...+++++|||++.+.+.||+++.|+
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T TIGR03005 173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD 221 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 9999999999999999988776667899999999999999999999986
No 115
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.9e-28 Score=194.48 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=127.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
++++++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... . .......++++++.. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~--~-~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK--G-LMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc--h-HHHHHhhEEEEecCcchhh
Confidence 357875 5689999999999999999999999999999999999999987631000 0 000001223333221 00
Q ss_pred cc------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 CH------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+. ........++++.+++..+.++++.+||+||+|+ ++.+|+.+ ||....|+.
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~ 175 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175 (283)
T ss_pred ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 00 0001235677899999999999999999999983 47788876 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+..++|+++|||++++.+.||++++++
T Consensus 176 ~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999988776668899999999999999999999996
No 116
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=7.5e-28 Score=185.16 Aligned_cols=166 Identities=14% Similarity=0.003 Sum_probs=122.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK-KASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh-hHHHHHHhCeeEEecchhhcc
Confidence 467875 56899999999999999999999999999999999999999874310000 000000011222222221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 0 011235678899999988999999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+..+...+..+..+ ..+++++||+++.+ ..||+++.+
T Consensus 170 ~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 170 RDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999877655 78999999999864 689999864
No 117
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=3.8e-28 Score=199.37 Aligned_cols=168 Identities=13% Similarity=0.017 Sum_probs=128.3
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
.++++ ||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...... ...... ..+++++|.. .+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~-~~~~~r-~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDD-EWRAVR-SDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHH-HHHHHh-CceEEEecCchhhc
Confidence 45777 456899999999999999999999999999999999999999876432100 000000 1223333321 11
Q ss_pred cc---------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 82 CH---------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 82 ~~---------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
+. ......+.++++.+++. ...++++.+|||||+|+ ++.+|+.+ ||...
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 10 00112345778899994 57889999999999983 48899987 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|..++..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus 192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999998877778999999999999999999999986
No 118
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-27 Score=191.46 Aligned_cols=163 Identities=11% Similarity=0.004 Sum_probs=124.2
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--cc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--IC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~ 82 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++... ++
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~~ 97 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF----EKL-RKHIGIVFQNPDNQFV 97 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHH-HhheeEEEeChHHhcc
Confidence 47775 5589999999999999999999999999999999999999987642100 000 011222222210 00
Q ss_pred ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.........++++.+++..+.+.++.+||+||+|+ ++.+|+++ ||+...|+..
T Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 177 (269)
T PRK13648 98 GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177 (269)
T ss_pred cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00001234577889999888899999999999983 47788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++||+++.+.. ||+++.++
T Consensus 178 ~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~ 216 (269)
T PRK13648 178 RQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMN 216 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEE
Confidence 9999999987765557899999999999875 99999986
No 119
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=9.6e-28 Score=186.88 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=125.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...++++++...++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~---------~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD---------LHKIGSLIESPPLYE 83 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc---------cccEEEEcCCCCccc
Confidence 467775 458999999999999999999999999999999999999987653210 012222222211111
Q ss_pred c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
. .......++++.+++....+.++.+||+||+|+ +..+|+.+ ||+...|+.++..+
T Consensus 84 ~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l 163 (223)
T TIGR03740 84 NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL 163 (223)
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH
Confidence 0 011245678889999988999999999999983 37788887 89999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..++..+..+ ..+|+++|||.+++...||+++.++
T Consensus 164 ~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 198 (223)
T TIGR03740 164 RELIRSFPEQ-GITVILSSHILSEVQQLADHIGIIS 198 (223)
T ss_pred HHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEe
Confidence 9999887654 7789999999999999999999985
No 120
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=8.4e-28 Score=207.67 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=128.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ........++++++...++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT----PAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC----HHHHHhCCEEEEeccCccCC
Confidence 357874 458999999999999999999999999999999999999997664210 00000112334443322211
Q ss_pred c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
. .......++++.+++....++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 1 001235678899999988999999999999983 47788887 99999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..++..+..+ ..+|+++|||++.+...||+++.++
T Consensus 180 ~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~ 214 (510)
T PRK15439 180 FSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMR 214 (510)
T ss_pred HHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999887655 7899999999999999999999997
No 121
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=8.1e-28 Score=188.21 Aligned_cols=158 Identities=16% Similarity=0.028 Sum_probs=122.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccccccchheeehhhhccCCCCcc--ccc-
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--ICH- 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~~- 83 (183)
+|++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.... .....++++++... ++.
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~-------~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS-------IRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhh-------hhhheeEEEecCchhhcCcc
Confidence 567999999999999999999999999999999 8999999998764210 00011222222210 000
Q ss_pred ------------------cccchHHHHHHHHcCCC---CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 84 ------------------EALAFPCLERIYVHGCP---SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 84 ------------------~~~~~~~l~vLe~l~L~---~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
......+.++++.+++. .+.+.++.+||+||+|+ +..+|+.+ ||....|+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 00012356778888987 57789999999999983 36788887 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+..+...+|+++||+++++.+.||+++.++
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999998766557899999999999999999999996
No 122
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.7e-28 Score=190.23 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=122.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT----AKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH----HHHHHhCEEEeccCcccCC
Confidence 35777 45689999999999999999999999999999999999999986542100 0000112333333221111
Q ss_pred c-----------------ccchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 84 E-----------------ALAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 84 ~-----------------~~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
. .......++++.+ ++....+.++.+||+||+|+ ++.+|+.+ ||+...|+..+
T Consensus 94 ~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~ 173 (237)
T PRK11614 94 RMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173 (237)
T ss_pred CCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence 0 0011233445666 46667788999999999983 36677776 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus 174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 174 QQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 9999999887655 7899999999999999999999986
No 123
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-27 Score=187.66 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=127.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ...++++++....+..
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~--~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-----H--KRPVNTVFQNYALFPH 86 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-----h--hcceEEEecccccCCC
Confidence 57875 4689999999999999999999999999999999999999986643100 0 0122232322211110
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.......++++.+++..+.+..+.+||+||+|+ ++.+|+.+ ||....|+.++
T Consensus 87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 166 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 001134567888999999999999999999983 47788887 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+...+..+..+..++|+++||+++.++..||+++.++
T Consensus 167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~ 205 (232)
T cd03300 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN 205 (232)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999998776668999999999999999999999986
No 124
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=1.3e-27 Score=188.85 Aligned_cols=164 Identities=15% Similarity=0.019 Sum_probs=123.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++++ ||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... . .......++++++..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--D-VVELRRRVGMVFQKP 91 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--c-hHHHHhheEEEecCc
Confidence 5776 4568999999999999999999999999999998 9999999987642100 0 000001223333221
Q ss_pred cccc-------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICH-------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~-------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++. ........++++.+++. ...+.++.+|||||+|+ ++.+|+.+ ||
T Consensus 92 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 171 (247)
T TIGR00972 92 NPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171 (247)
T ss_pred ccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1110 00012345678888997 67888999999999983 47788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+..+ .+++++|||++.+...||+++.++
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~ 217 (247)
T TIGR00972 172 TSALDPIATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTAFFY 217 (247)
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CeEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999999999887654 799999999999999999999997
No 125
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=1.2e-27 Score=186.81 Aligned_cols=165 Identities=14% Similarity=0.060 Sum_probs=124.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... .. ....++++++...++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~-~~~~i~~~~q~~~l~~ 94 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----EI-YRQQVSYCAQTPTLFG 94 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH----HH-HHhccEEEeccccccc
Confidence 457774 5689999999999999999999999999999999999999876542100 00 0011222222211111
Q ss_pred ---------------c-ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 84 ---------------E-ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 84 ---------------~-~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
. .......++++.+++. .+.+.++.+||+||+|+ ++.+|+++ ||+...|+..+.
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (225)
T PRK10247 95 DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174 (225)
T ss_pred ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0 0112345788899996 57899999999999983 47788887 899999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
.+..++..+..+...+++++|||++++ ..||+++.+|=
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~-~~~d~i~~l~~ 212 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEI-NHADKVITLQP 212 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHH-HhCCEEEEEec
Confidence 999999987666578999999999998 46999999973
No 126
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.2e-28 Score=193.31 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=126.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++.. .++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~----~~~-~~~i~~~~q~~~~~~~ 95 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV----WDV-RRQVGMVFQNPDNQFV 95 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HHH-hhheEEEEeCHHHhcc
Confidence 47875 5689999999999999999999999999999999999999987643100 000 01122222211 000
Q ss_pred ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.........++++.+++..+.++++.+||+||+|+ ++.+|+.+ ||+...|+.+
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 175 (279)
T PRK13635 96 GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 (279)
T ss_pred cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00001235778888999999999999999999983 48889987 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+..++|+++||+++.+. .||+++.|+
T Consensus 176 ~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~ 214 (279)
T PRK13635 176 RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMN 214 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEE
Confidence 999999999887766899999999999986 599999986
No 127
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.8e-28 Score=190.42 Aligned_cols=164 Identities=15% Similarity=0.044 Sum_probs=124.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++...++
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~ 89 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS----RQL-ARRLALLPQHHLTPE 89 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH----HHH-hhheEEecccCCCCC
Confidence 467875 5689999999999999999999999999999999999999976532100 000 00122222211110
Q ss_pred -------------------c---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 83 -------------------H---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 83 -------------------~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ........++++.+++..+.+.++.+||+||+|+ ++.+|+.+ ||....
T Consensus 90 ~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 169 (255)
T PRK11231 90 GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169 (255)
T ss_pred CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 0 0011234667888999888999999999999983 47788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+..++..+..+ ..+++++||+++.+.+.||+++.++
T Consensus 170 D~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~ 212 (255)
T PRK11231 170 DINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLA 212 (255)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEE
Confidence 999999999999877655 7899999999999999999999996
No 128
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.7e-28 Score=192.95 Aligned_cols=165 Identities=17% Similarity=0.109 Sum_probs=126.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ....++++++.. .+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~---~~~-~~~~i~~v~q~~~~~~ 98 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN---LWD-IRNKAGMVFQNPDNQI 98 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---HHH-HhhheEEEecChhhhh
Confidence 3588855 589999999999999999999999999999999999999987642100 000 001122222211 00
Q ss_pred c------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 C------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+ .........++++.+++..+.++++.+||+||+|+ +..+|+.+ ||....|+.
T Consensus 99 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 178 (280)
T PRK13633 99 VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178 (280)
T ss_pred ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0 00011235677889999999999999999999983 47788876 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+...+|+++|||++++.. ||+++.++
T Consensus 179 ~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 179 GRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEE
Confidence 99999999998866668899999999999876 99999996
No 129
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.7e-27 Score=183.21 Aligned_cols=162 Identities=11% Similarity=0.087 Sum_probs=123.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . ....++++++...++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~-----~-~~~~~~~~~~~~~~~~ 87 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD-----E-YHQDLLYLGHQPGIKT 87 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchH-----H-hhhheEEeCCccccCc
Confidence 357774 5689999999999999999999999999999999999999977542100 0 0011222222111110
Q ss_pred c----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 84 E----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 84 ~----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
. .....+.++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+..+..
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 167 (204)
T PRK13538 88 ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR 167 (204)
T ss_pred CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 0 111235678899999888899999999999983 47788886 8999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+..++.....+ ..+++++|||++++-++-+|+|.+
T Consensus 168 l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 168 LEALLAQHAEQ-GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHC-CCEEEEEecChhhhccCCceEEec
Confidence 99999877544 678999999999999999999876
No 130
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=1.4e-27 Score=189.64 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=124.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--- 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--- 80 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++...
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----RAR-ARRVALVEQDSDTAV 88 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH----HHH-hhheEEecccCccCC
Confidence 467874 4689999999999999999999999999999999999999976542100 000 001122221110
Q ss_pred -----------------ccc---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 81 -----------------ICH---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 81 -----------------l~~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
.+. ........++++.+++..+.+.++.+||+||+|+ +..+|+.| ||....
T Consensus 89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 168 (256)
T TIGR03873 89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHL 168 (256)
T ss_pred CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 000 0011235677888999988999999999999983 36788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 169 D~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (256)
T TIGR03873 169 DVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLD 211 (256)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999887654 6789999999999999999999996
No 131
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=1.1e-27 Score=189.35 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=118.6
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc----ccchheeehhhhccCCCCccccccccch
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS----VCSFILIRRAYFFKLPNLKSICHEALAF 88 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~----~~~~~~l~~~~lg~lp~l~~l~~~~~~~ 88 (183)
++++||+++|+||||||||||+++|+|+++|++|+|.++|..+.-... ....+..+.+... ... . .....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~-~~~---~--~~~~~ 94 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSI-TKD---F--YTHPY 94 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHH-hhh---c--cccHH
Confidence 456899999999999999999999999999999999998853321100 0000111111000 000 0 00112
Q ss_pred HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195 89 PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY 159 (183)
Q Consensus 89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
...++++.+++....++++.+|||||+|+ ++.+|+.+ ||....|+..+..+...+..+..+...+++++||
T Consensus 95 ~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 174 (246)
T cd03237 95 FKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34678889999988999999999999983 47788887 8999999999999999998877666789999999
Q ss_pred eeeeeecccceEEEEe
Q 036195 160 TYEATIRPRYELICID 175 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~~ 175 (183)
|++++...||+++.++
T Consensus 175 d~~~~~~~~d~i~~l~ 190 (246)
T cd03237 175 DIIMIDYLADRLIVFE 190 (246)
T ss_pred CHHHHHHhCCEEEEEc
Confidence 9999999999999985
No 132
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.7e-28 Score=194.68 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=124.3
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-cccchheeehhhhccCCCCc--cc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ........ ...++++++.. .+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL-RKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHH-hccEEEEEeCcchhh
Confidence 47875 569999999999999999999999999999999999999997653100 00000000 01122222211 00
Q ss_pred c-----c---------cc----cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 82 C-----H---------EA----LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 82 ~-----~---------~~----~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
+ . .. ......++++.++++ .+.++++.+||+||+|+ +..+|+.+ ||+...|+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 0 0 00 011245678888995 68899999999999983 47788887 99999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+..+...+|+|+||+++.+.+.||+++.++
T Consensus 184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 225 (289)
T PRK13645 184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 (289)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999987766557899999999999999999999997
No 133
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.94 E-value=1.2e-27 Score=186.44 Aligned_cols=163 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc---ccccc-h---------heeehhhhccCCCC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK---ISVCS-F---------ILIRRAYFFKLPNL 78 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~---~~~~~-~---------~~l~~~~lg~lp~l 78 (183)
|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+.. . +..+.+..+.....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999865311 11100 0 00000000000000
Q ss_pred cccccc--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195 79 KSICHE--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT 147 (183)
Q Consensus 79 ~~l~~~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~ 147 (183)
...... .......++++.+++....+.++.+||+||+|+ +..+|+.+ ||+...|+.++..+..++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000000 011235678899999988899999999999983 47788887 9999999999999999998776
Q ss_pred cccccCCCCCCceeeeeecccceEEEEe
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+ ..+++++|||++.+.+.||+++.+|
T Consensus 161 ~~-~~tvii~sH~~~~~~~~~d~i~~l~ 187 (223)
T TIGR03771 161 GA-GTAILMTTHDLAQAMATCDRVVLLN 187 (223)
T ss_pred Hc-CCEEEEEeCCHHHHHHhCCEEEEEC
Confidence 44 7899999999999999999999873
No 134
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-27 Score=207.18 Aligned_cols=165 Identities=14% Similarity=0.023 Sum_probs=126.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc--
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI-- 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l-- 81 (183)
+++++ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++..... .......++++++...+
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH----KLAAQLGIGIIYQELSVID 93 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH----HHHHHCCeEEEeecccccC
Confidence 35787 45689999999999999999999999999999999999999977642100 00000011222111100
Q ss_pred ------------------cc------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 82 ------------------CH------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 82 ------------------~~------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
+. ........++++.+++....++++.+|||||+|+ ++.+|+.+ ||.
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 173 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 0011235678899999988999999999999983 47788887 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..-|+..+..+..++..+..+ ..+|+++|||++.+...||++++++
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~ 219 (510)
T PRK09700 174 SSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMK 219 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999988655 7899999999999999999999997
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-27 Score=187.84 Aligned_cols=169 Identities=13% Similarity=-0.017 Sum_probs=126.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc-ccchheeehhhhccCCCCcccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS-VCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~-~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+++|++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...........++++++...++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 367875 5689999999999999999999999999999999999999986520000 0000000001233333322211
Q ss_pred cc--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 83 HE--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 ~~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
.. .......++++.+++..+.+.++.+|||||+|+ +..+|+++ ||....|+
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 10 001134667888999988899999999999983 37788887 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+..+ ..+++++|||++.+...||++++++
T Consensus 175 ~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~ 215 (242)
T PRK11124 175 EITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYME 215 (242)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 9999999999887654 7889999999999999999999996
No 136
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=1.9e-27 Score=188.91 Aligned_cols=169 Identities=11% Similarity=0.019 Sum_probs=126.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---cc---cch--heeehhhhccC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SV---CSF--ILIRRAYFFKL 75 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~---~~~--~~l~~~~lg~l 75 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ... .......++++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 357774 568999999999999999999999999999999999999997653200 00 000 00001234444
Q ss_pred CCCcccccc------c--------------cchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc---
Q 036195 76 PNLKSICHE------A--------------LAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 76 p~l~~l~~~------~--------------~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
++...++.. . ......++++.+++... .+.++.+||+||+|+ +..+|+.+
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 443222211 0 01124567888999876 488899999999983 47788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+..+ .++|+++|||++.+.+.|||++.|+
T Consensus 178 EPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 178 EPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 899999999999999999888655 8999999999999999999999997
No 137
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.8e-27 Score=188.18 Aligned_cols=169 Identities=12% Similarity=0.016 Sum_probs=125.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc---chheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC---SFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~---~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... .........++++++...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 367875 568999999999999999999999999999999999999987654210000 000000112333333221
Q ss_pred cccc----------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 81 ICHE----------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 81 l~~~----------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
++.. . ......++++.+++....+.++.+||+||+|+ +..+|+.+ ||....
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L 175 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1110 0 01124567888899888899999999999983 36778776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus 176 D~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~ 218 (250)
T PRK11264 176 DPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMD 218 (250)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999998877654 7899999999999999999999997
No 138
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.8e-28 Score=192.33 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=125.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... .....++++++... +
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR--GLL-ALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC--CHH-HHHhheEEEeeChhhcc
Confidence 357875 5689999999999999999999999999999999999999987631100 000 00011222222110 0
Q ss_pred c-----c---------ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 C-----H---------EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~-----~---------~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+ . ... .....++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0 0 000 1124567888899888899999999999983 47788887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus 171 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 171 GRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999887654 7889999999999999999999986
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=1.5e-27 Score=189.98 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=126.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcccccc-ccchheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKIS-VCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~-~~~~~~l~~~~lg~lp~l~ 79 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ...... ....++++++..
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~~i~~~~q~~ 95 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK-SRANTGYIFQQF 95 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH-HHhheEEEcccc
Confidence 467775 458999999999999999999999999999986 4999999986532100 000000 001122222211
Q ss_pred cccc---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc-
Q 036195 80 SICH---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW- 125 (183)
Q Consensus 80 ~l~~---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~- 125 (183)
.++. ........++++.+++....++++.+||+||+|+ +..+|+.+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 1110 0011235678888999888899999999999983 47788887
Q ss_pred --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+..+...+++++|||++.+...||++++|+
T Consensus 176 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~ 227 (262)
T PRK09984 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227 (262)
T ss_pred ecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999998876657899999999999999999999996
No 140
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-27 Score=204.54 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=125.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---c
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---S 80 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~ 80 (183)
..+|+ ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .......++++++.. .
T Consensus 276 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~ 351 (510)
T PRK09700 276 RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP----LDAVKKGMAYITESRRDNG 351 (510)
T ss_pred CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH----HHHHHCCcEEccCccccCC
Confidence 45787 45699999999999999999999999999999999999999976532100 000000122222210 0
Q ss_pred cc---------------------------cc-ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc
Q 036195 81 IC---------------------------HE-ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW 125 (183)
Q Consensus 81 l~---------------------------~~-~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~ 125 (183)
++ .. .......++++.+++. ...++++.+|||||+|+ +..+|+.+
T Consensus 352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 431 (510)
T PRK09700 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVI 431 (510)
T ss_pred CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEE
Confidence 00 00 0011346788999996 78899999999999983 36788887
Q ss_pred ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+...|+..+..+..++..+..+ ..+|+++|||++.+...||++++++
T Consensus 432 lLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~ 483 (510)
T PRK09700 432 IFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFC 483 (510)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 999999999999999999988654 7889999999999999999999996
No 141
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=3.2e-27 Score=181.33 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=124.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... . .....++++++...++.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~-~~~~~i~~~~q~~~~~~ 86 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-----D-SIARGLLYLGHAPGIKT 86 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-----H-HhhhheEEeccccccCC
Confidence 357775 569999999999999999999999999999999999999987754210 0 00112333333221111
Q ss_pred -------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195 84 -------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 84 -------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
........++++.+++..+.+.++.+||+||+|+ +..+|+++ ||....|+..+..+..
T Consensus 87 ~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~ 166 (201)
T cd03231 87 TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE 166 (201)
T ss_pred CcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0012245677899999988899999999999983 47788887 8999999999999999
Q ss_pred ceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 142 KLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
++.....+ ..+++++|||.......|++++.+
T Consensus 167 ~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 167 AMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 99876554 778999999999999999999765
No 142
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.8e-27 Score=186.67 Aligned_cols=146 Identities=15% Similarity=0.018 Sum_probs=127.4
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
.+++ ||+|++||++||+|+|||||||+-|+|.||++|++|+|+|+|+++.... ..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-----------------------~~ 83 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-----------------------KE 83 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-----------------------hh
Confidence 5566 6679999999999999999999999999999999999999999875420 11
Q ss_pred ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195 85 ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI 154 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
.....+.++++.+++.. ...+.++++||||+|+ ++-+|+++ |+.+-.|..++..+..++..++.+...+.
T Consensus 84 ~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~ 163 (268)
T COG4608 84 ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY 163 (268)
T ss_pred HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE
Confidence 12345789999999875 7889999999999984 37788886 88999999999999999999999999999
Q ss_pred CCCCceeeeeecccceEEEEe
Q 036195 155 PQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.+|||+.+|-..|||+.+..
T Consensus 164 lFIsHDL~vv~~isdri~VMy 184 (268)
T COG4608 164 LFISHDLSVVRYISDRIAVMY 184 (268)
T ss_pred EEEEEEHHhhhhhcccEEEEe
Confidence 999999999999999998865
No 143
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-27 Score=187.11 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=125.7
Q ss_pred cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc--
Q 036195 8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-- 83 (183)
Q Consensus 8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-- 83 (183)
++++ |++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++..... . ...++++++...++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-----~--~~~i~~~~q~~~~~~~~ 86 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-----E--KRDISYVPQNYALFPHM 86 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-----h--HcCEEEEeecCccCCCc
Confidence 6764 5689999999999999999999999999999999999999986643100 0 011222222211111
Q ss_pred -----------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 84 -----------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 84 -----------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
........++++.+++..+.++++.+||+||+|+ ++..|+.+ ||....|...+.
T Consensus 87 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 166 (235)
T cd03299 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166 (235)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHH
Confidence 0011234677889999999999999999999983 47788887 899999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+...+..+..+..++++++||+++.+.+.||+++.++
T Consensus 167 ~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~ 204 (235)
T cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML 204 (235)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999988766668899999999999999999999996
No 144
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-27 Score=190.80 Aligned_cols=169 Identities=15% Similarity=0.050 Sum_probs=122.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----ccccc-hhe---------ee
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----ISVCS-FIL---------IR 68 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----~~~~~-~~~---------l~ 68 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..+.+ -+. ..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 457875 56899999999999999999999999999999999999999765321 00000 000 00
Q ss_pred hhhhccCCCCccccc--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 69 RAYFFKLPNLKSICH--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 69 ~~~lg~lp~l~~l~~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
...++.......... ........++++.+++....++++.+|||||+|+ +..+|+.+ ||+...|+..+.
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 000000000000000 0011234567899999988899999999999983 46778887 999999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..++..+..+ ..+++++|||++.+...||+++.++
T Consensus 180 ~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~~ 216 (272)
T PRK15056 180 RIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK 216 (272)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEC
Confidence 999999887655 7889999999999999999987653
No 145
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=3e-27 Score=186.11 Aligned_cols=165 Identities=13% Similarity=-0.061 Sum_probs=121.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++..... .......++++++...+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP----DERARAGLFLAFQYPEE 88 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH----HHhhccceEeeeccccc
Confidence 357774 569999999999999999999999999995 7999999999986542100 00000112222221111
Q ss_pred ccc--------------------------ccchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195 82 CHE--------------------------ALAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 82 ~~~--------------------------~~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~-- 125 (183)
+.. .......++++.++++ .+.++++. +||+||+|+ +..+|+.+
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 100 0012346678888997 56778887 599999983 37788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (183)
||+...|+..+..+..++..+..+ ..+++++|||++.+... ||++++++
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVLL 219 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEEe
Confidence 899999999999999999887543 67899999999999987 89999986
No 146
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=2.2e-27 Score=184.56 Aligned_cols=167 Identities=11% Similarity=0.022 Sum_probs=126.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++...++.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK-E-LVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh-H-HHHHHhheEEEcCChhhcC
Confidence 457875 45899999999999999999999999999999999999999866421000 0 0000012222222211111
Q ss_pred ----------------c----ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 ----------------E----ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ----------------~----~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. .......++++.+++....+.++.+||+||+|+ ++.+|+.+ ||....|++
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 175 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 0 011235778899999988899999999999983 47788887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+...+++++||+++ +++.||+++.++
T Consensus 176 ~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~~l~ 215 (220)
T TIGR02982 176 SGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIVHME 215 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEEEEE
Confidence 9999999998887656899999999998 578999999986
No 147
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=4.2e-27 Score=182.34 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=125.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... . ...++++++...++.
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~-------~-~~~i~~~~q~~~~~~ 95 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-------R-SRFMAYLGHLPGLKA 95 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh-------h-hhceEEeecCccccc
Confidence 357774 569999999999999999999999999999999999999998664210 0 011223222211111
Q ss_pred c----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 84 E----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 84 ~----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
. .......++++.+++....+.++.+||+||+|+ +..+|+.+ ||....|+..+..
T Consensus 96 ~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (214)
T PRK13543 96 DLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 (214)
T ss_pred CCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0 011223567888999988899999999999983 37788887 8999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
+..++.....+ ..+++++|||++++.+.|++++.++.
T Consensus 176 l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 176 VNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence 99999877555 67899999999999999999998874
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=2.7e-27 Score=187.84 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=124.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.... .....++++++..
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~-------~~~~~i~~v~q~~ 88 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA-------LRGRKIATIMQNP 88 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc-------cccceEEEEecCC
Confidence 467875 46899999999999999999999999999999 9999999998763210 0001122222221
Q ss_pred c--cc----------------c-cccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 80 S--IC----------------H-EALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 80 ~--l~----------------~-~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
. +. . ........++++.+++.. +.+.++.+||+||+|+ ++.+|+.+ ||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 89 RSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred ccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 00 0 001123567788889876 5688999999999983 47788886 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...|+..+..+...+..+..+...+|+++||+++.+.+.||+++.++
T Consensus 169 ~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 169 TDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999999999987765557899999999999999999999996
No 149
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-27 Score=209.15 Aligned_cols=167 Identities=13% Similarity=-0.057 Sum_probs=128.1
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |+|.+||++||+||||||||||+++|+|+++|++|+|+++|.++..... ...... ...+++++|.. .++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~-~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP-GKLQAL-RRDIQFIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH-HHHHHh-cCCeEEEecCchhhcC
Confidence 57874 5689999999999999999999999999999999999999986642100 000000 01233333321 111
Q ss_pred cc--------------------ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 83 HE--------------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 ~~--------------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.. .....+.++++.+++. ...++++.+|||||+|+ ++.+|+.+ ||+...|
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 10 0012356788999995 67899999999999983 37788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+...+++++|||++.+...||||++++
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999998877778999999999999999999999996
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=2.5e-27 Score=186.28 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=126.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... . ....++++++...++.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------~-~~~~i~~~~q~~~~~~ 85 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------A-RDRKIGFVFQHYALFK 85 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------h-hhcCEEEEecChhhcc
Confidence 467875 459999999999999999999999999999999999999998754210 0 0012223332221111
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++..+.+.++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 86 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 165 (237)
T TIGR00968 86 HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165 (237)
T ss_pred CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 001234677888999888899999999999983 36677776 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+..++++++||+.+.+.+.||+++.++
T Consensus 166 ~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 166 RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 9999999998766557999999999999999999999997
No 151
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-27 Score=190.17 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=123.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--cc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--IC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~ 82 (183)
++|++ |+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .... ...++++++... ++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~-~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---LQGI-RKLVGIVFQNPETQFV 91 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc---HHHH-HhheEEEEEChhhhcc
Confidence 47874 5689999999999999999999999999999999999999987642100 0000 011222222110 00
Q ss_pred -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. ......+.++++.+++..+.+.++..||+||+|+ ++.+|+.+ ||+...|+.+
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 171 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171 (274)
T ss_pred cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0 0011235667888999999999999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++|||++.+ ..||+++.|+
T Consensus 172 ~~~l~~~l~~l~~~-g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 172 GIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEecCHHHH-hhCCEEEEEE
Confidence 99999999887654 88999999999997 6799999996
No 152
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.6e-27 Score=189.64 Aligned_cols=163 Identities=16% Similarity=0.183 Sum_probs=127.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhh-------hccCCC------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAY-------FFKLPN------ 77 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~-------lg~lp~------ 77 (183)
||+|++||++.|.|-||||||||+|++++|+.|++|+|.++|.++...... ....++... ++.+|+
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~-~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~N 126 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA-ELRELRRKKISMVFQSFALLPHRTVLEN 126 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHH-HHHHHHhhhhhhhhhhhccccchhHhhh
Confidence 788999999999999999999999999999999999999999987642100 000000011 111111
Q ss_pred ------CccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 78 ------LKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 78 ------l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
...+.........+++++.+|+....+.++++|||||+|+ ++.+|+.| |+++--||-++...|.-
T Consensus 127 v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 1222222223356888999999999999999999999984 47888887 88999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+-.++.+.-.+|..+||||++.+++-||+-+.
T Consensus 207 Ll~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 207 LLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred HHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 98899998999999999999999999997543
No 153
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-27 Score=180.39 Aligned_cols=152 Identities=17% Similarity=0.114 Sum_probs=114.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .........++++++...+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~~~~~i~~~~q~~~~-- 87 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE---DELPPLRRRIGMVFQDFAL-- 87 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc---hhHHHHhhcEEEEecCCcc--
Confidence 357774 568999999999999999999999999999999999999998664310 0000111234444443222
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI 154 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
++..++.+++... ||+||+|+ +..+|++| ||....|+..+..+..++..+..+...++
T Consensus 88 ----~~~~t~~~~l~~~---------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 154 (178)
T cd03229 88 ----FPHLTVLENIALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154 (178)
T ss_pred ----CCCCCHHHheeec---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 2223344443322 99999983 47788887 99999999999999999988776657899
Q ss_pred CCCCceeeeeecccceEEEEe
Q 036195 155 PQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++|||.+.+...||+++.++
T Consensus 155 ii~sH~~~~~~~~~d~i~~l~ 175 (178)
T cd03229 155 VLVTHDLDEAARLADRVVVLR 175 (178)
T ss_pred EEEeCCHHHHHHhcCEEEEEe
Confidence 999999999999999999986
No 154
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-27 Score=204.07 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=125.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++..... .......++++++...+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI----RDTERAGIAIIHQELAL 93 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH----HHHHHCCeEEEEecccc
Confidence 367874 56899999999999999999999999999986 89999999987642100 00000112222221100
Q ss_pred c----------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 82 C----------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 82 ~----------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
+ .........++++.+++....++++.+|||||+|+ ++.+|+.+ ||...
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 173 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 0 00011235678999999989999999999999983 47788887 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|+..+..+..++..+..+ ..+++++|||++.+...||+++.|+
T Consensus 174 LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 174 LTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 9999999999999888544 7889999999999999999999997
No 155
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-27 Score=190.49 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=124.6
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCccccccccchheeehhhhccCCCCc--
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-- 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-- 79 (183)
+++++ |++.+||++||+||||||||||+++|+|+++|++ |+|.++|.++..... ... ...++++++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~----~~~-~~~ig~v~q~~~~ 95 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV----WDI-REKVGIVFQNPDN 95 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH----HHH-HhheEEEEECHHH
Confidence 47775 4689999999999999999999999999999998 899999987643100 000 01122222211
Q ss_pred ccc-----c---------cc----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 80 SIC-----H---------EA----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 80 ~l~-----~---------~~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.++ . .. ....+.++++.+++..+.++++..||+||+|+ ++.+|+++ ||....|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 96 QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 000 0 00 01235678899999999999999999999983 48889987 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.++..+..++..+..+...+|+++||+++.+ ..||++++|+
T Consensus 176 ~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~ 217 (282)
T PRK13640 176 PAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLD 217 (282)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence 99999999999877665578999999999998 4799999995
No 156
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=3.7e-27 Score=200.49 Aligned_cols=168 Identities=15% Similarity=0.025 Sum_probs=127.9
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
.+++ ||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+..-... ..........+.+.-...++.+.
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~-~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG-ELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccc-hhhhhhhheEEEEeCcccccCcc
Confidence 4455 56799999999999999999999999999999999999999987211100 00000001111111111111110
Q ss_pred --------------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 85 --------------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 85 --------------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
.....+.++++.++++. +.++++++|||||+|+ ++.+|+.+ |+++=.|+.
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 01123567799999987 7999999999999984 47888887 889999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..++.+...+.+++|||+.+|...||||.+.+
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~ 504 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY 504 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE
Confidence 99999999999999999999999999999999999999876
No 157
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=5.5e-27 Score=202.60 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=124.3
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---ccc
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---SIC 82 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~l~ 82 (183)
+|+ ||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++..... .......++|+++.. .++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~l~ 353 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST----AQRLARGLVYLPEDRQSSGLY 353 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCH----HHHHhCCcEECCCChhhCCcc
Confidence 566 45699999999999999999999999999999999999999976642100 000001123333210 000
Q ss_pred c--------------------cc--cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 83 H--------------------EA--LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 83 ~--------------------~~--~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
. .. ......++++.+++. ...++++.+|||||+|+ ++.+|+.+ ||...
T Consensus 354 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~g 433 (510)
T PRK15439 354 LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433 (510)
T ss_pred CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcC
Confidence 0 00 011245778899997 78899999999999983 36788887 99999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+..+..+..++..+..+ ..+|+++|||++++.+.||++++|+
T Consensus 434 LD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~ 477 (510)
T PRK15439 434 VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMH 477 (510)
T ss_pred cChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 9999999999999888665 7889999999999999999999996
No 158
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-27 Score=203.15 Aligned_cols=165 Identities=13% Similarity=-0.016 Sum_probs=125.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .......++++++...++
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS----KEALENGISMVHQELNLVL 86 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH----HHHHhCCEEEEeccccccc
Confidence 357874 5689999999999999999999999999999999999999986542100 000000112222211000
Q ss_pred --------------------c-cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 83 --------------------H-EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 --------------------~-~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. ........++++.+++....++++.+|||||+|+ ++.+|+.+ ||....|
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD 166 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 0 0001235677888999888899999999999983 47788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+ ..+++++|||++++...||+++.++
T Consensus 167 ~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 167 EKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999998887544 7899999999999999999999997
No 159
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.9e-27 Score=188.63 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=124.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... .... ...++++++.. .+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~----~~~~-~~~i~~v~q~~~~~~ 96 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LKEI-RKKIGIIFQNPDNQF 96 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC----HHHH-hcceEEEEeCHHHhc
Confidence 367875 568999999999999999999999999999999999999998764210 0000 01122222221 00
Q ss_pred -----ccc---------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 -----CHE---------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 -----~~~---------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
..+ . ......++++.+++....+.++.+||+||+|+ ++.+|+.+ ||+...|+.
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~ 176 (271)
T PRK13632 97 IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176 (271)
T ss_pred CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 000 0 01124667888999988999999999999983 47788886 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+...+++++||+++.+. .||+++.++
T Consensus 177 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~ 216 (271)
T PRK13632 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFS 216 (271)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEE
Confidence 9999999998876654589999999999985 799999986
No 160
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=4.3e-27 Score=182.74 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=118.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++..... ... ...++++++...++.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~ 91 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADL-RRNIGYVPQDVTLFY 91 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH----HHH-HhhEEEeCCCCcccc
Confidence 357875 5689999999999999999999999999999999999999976542100 000 012333333221111
Q ss_pred -----c-------ccchHHHHHHHHcCCCCccCCC-----------CCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 -----E-------ALAFPCLERIYVHGCPSLRKLP-----------FSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 -----~-------~~~~~~l~vLe~l~L~~L~~~~-----------~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
+ .......++++.+++.++.+.. +.+|||||+|+ +..+|+.+ ||....
T Consensus 92 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~L 171 (220)
T cd03245 92 GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171 (220)
T ss_pred chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 0 0112344567777776655543 46999999983 36778876 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+..++.....+ .+|+++|||++.+ ..||+++.|+
T Consensus 172 D~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~-~~~d~v~~l~ 212 (220)
T cd03245 172 DMNSEERLKERLRQLLGD--KTLIIITHRPSLL-DLVDRIIVMD 212 (220)
T ss_pred CHHHHHHHHHHHHHhcCC--CEEEEEeCCHHHH-HhCCEEEEEe
Confidence 999999999999877654 7899999999975 8999999986
No 161
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=3.7e-27 Score=202.74 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=126.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--- 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--- 80 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... .... ...++++++...
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~----~~~~-~~~i~~~~q~~~~~~ 90 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS----FEQL-QKLVSDEWQRNNTDM 90 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC----HHHH-HHHhceeccCcchhh
Confidence 357875 568999999999999999999999999999999999999886653210 0000 011233332110
Q ss_pred -----------ccccc-----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 81 -----------ICHEA-----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 81 -----------l~~~~-----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
+.... ......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 91 LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred cccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 00000 01235678999999999999999999999983 37788887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++|||++.+.+.||++++|+
T Consensus 171 ~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~ 209 (490)
T PRK10938 171 RQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLA 209 (490)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 99999999888655 7899999999999999999999997
No 162
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-27 Score=193.37 Aligned_cols=167 Identities=17% Similarity=0.088 Sum_probs=125.4
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-------c-----ccchheeehhhh
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-------S-----VCSFILIRRAYF 72 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-------~-----~~~~~~l~~~~l 72 (183)
++|+++ +|++||++||+||||||||||+++|+|+++|++|+|+++|.++.... . ...... ....+
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 118 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE-LRRRV 118 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHH-HHhcE
Confidence 588855 58999999999999999999999999999999999999987653210 0 000000 01123
Q ss_pred ccCCCCc--cccc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc
Q 036195 73 FKLPNLK--SICH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW 125 (183)
Q Consensus 73 g~lp~l~--~l~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~ 125 (183)
+++++.. .++. ......+.++++.+++. .+.++++.+|||||+|+ ++.+|+.+
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3333321 1110 00112345678889996 68899999999999983 47788887
Q ss_pred ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+.++..+...+..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus 199 LLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 899999999999999999877655 7899999999999999999999987
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=5.5e-27 Score=202.19 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=125.1
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---cc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---SI 81 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~l 81 (183)
++++ ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .......++++++.. .+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~~ 341 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP----QDGLANGIVYISEDRKRDGL 341 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH----HHHHHCCCEEecCccccCCC
Confidence 4676 55689999999999999999999999999999999999999976542100 000001122222221 00
Q ss_pred c-------------------------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 82 C-------------------------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 82 ~-------------------------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
+ .........++++.+++. ...++++.+|||||+|+ ++.+|+.+ |
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 0 000112356788999995 67899999999999983 36788887 9
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+..+ ..+++++|||++++.+.||++++++
T Consensus 422 Pt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~ 469 (501)
T PRK10762 422 PTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMH 469 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 99999999999999999988665 7899999999999999999999996
No 164
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-27 Score=194.40 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=127.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
.++|++ |+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++...... .........+++++|..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~-~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK-ERRNLVGAEVAMIFQDP 98 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH-HHHHHhCCCEEEEecCc
Confidence 357885 5699999999999999999999999999997 4899999999876431000 00000001233333321
Q ss_pred c--ccc--------------------cccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 80 S--ICH--------------------EALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 80 ~--l~~--------------------~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
. +.. ......+.++++.+++.. ..+.++++|||||+|+ ++.+|+.+
T Consensus 99 ~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilD 178 (326)
T PRK11022 99 MTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIAD 178 (326)
T ss_pred hhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0 110 001123567889999964 5678899999999983 47889987
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+.++..+..++..+..+...+++++|||++.+.+.||||++++
T Consensus 179 EPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~ 228 (326)
T PRK11022 179 EPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 89999999999999999999887778999999999999999999999986
No 165
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=3.5e-27 Score=193.64 Aligned_cols=169 Identities=10% Similarity=-0.031 Sum_probs=126.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK- 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~- 79 (183)
.+++++ |+|.+||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..... ..........+++++|..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~-~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE-KELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH-HHHHHHhcCCEEEEEcCch
Confidence 357774 569999999999999999999999999999996 9999999987643100 000000001233333321
Q ss_pred -cccc----------------c----ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 80 -SICH----------------E----ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 80 -~l~~----------------~----~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
.+.. . .....+.++++.++++. ..+.++.+|||||+|+ ++.+|+++ |
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE 187 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0100 0 00123466788888874 3467889999999983 48899987 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|..++..+..++..+..+...+++++|||++.+.+.||+++.+.
T Consensus 188 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~ 236 (330)
T PRK09473 188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 236 (330)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999999999999999998887778999999999999999999999985
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-27 Score=193.83 Aligned_cols=169 Identities=10% Similarity=-0.041 Sum_probs=126.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
.+++++ |+|.+||++||+|+||||||||+++|+|+++ |++|+|.|+|+++...... .........+++++|..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR-ERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH-HHHHHhCCCEEEEecCc
Confidence 357875 5699999999999999999999999999996 5899999999876431000 00000001122222211
Q ss_pred c--cc-----------------------cc--ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchh
Q 036195 80 S--IC-----------------------HE--ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEE 123 (183)
Q Consensus 80 ~--l~-----------------------~~--~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~ 123 (183)
. +. .. .....+.++++.+++.. ..+.++.+|||||+|+ ++.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 0 00 00 01124567899999974 4578899999999983 478888
Q ss_pred hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+ ||+...|+.++..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus 179 llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 87 89999999999999999999877778999999999999999999999985
No 167
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=5.3e-27 Score=183.00 Aligned_cols=161 Identities=12% Similarity=0.026 Sum_probs=118.7
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH- 83 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~- 83 (183)
++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... . .....++++++...++.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~-~~~~~i~~~~q~~~l~~~ 102 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH----K-YLHSKVSLVGQEPVLFAR 102 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH----H-HHHhhEEEEecccHHHhh
Confidence 578755 589999999999999999999999999999999999999986542100 0 00011222222211110
Q ss_pred -----------cccc---------hHHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 -----------EALA---------FPCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 -----------~~~~---------~~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.... ....+.++.+ ++....+.++.+||+||+|+ +..+|+++ ||+.+.|
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 182 (226)
T cd03248 103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182 (226)
T ss_pred hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0000 0123456666 67777888899999999983 47888887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+.. ..+++++|||++++. .||+++.++
T Consensus 183 ~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~ 222 (226)
T cd03248 183 AESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLD 222 (226)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEec
Confidence 9999999999987754 379999999999986 599999986
No 168
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=8.4e-27 Score=173.71 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=128.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---- 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---- 79 (183)
+++|++ |+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++...... ..|.++ ..+|.+.|..
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~-~iP~LR-R~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR-EIPFLR-RQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc-ccchhh-heeeeEeeeccccc
Confidence 457764 56899999999999999999999999999999999999999988653111 011111 1222222211
Q ss_pred --ccccc-------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 80 --SICHE-------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 80 --~l~~~-------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.++.+ ....++.++++.+|+.+..+.-+.+|||||+|+ |..+|+.+ ||..-.||+.
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~ 172 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHH
Confidence 11111 111246889999999999999999999999883 57888887 7888888888
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-..+..+|..+... ..+|+|.+||.+.|-+...|++.|+
T Consensus 173 s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 173 SWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEe
Confidence 88888888877766 9999999999999999999999987
No 169
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-26 Score=184.83 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=120.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..... .... ....++++++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~~~~-~~~~i~~~~q~ 93 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--DPVA-VRRTIGMVFQR 93 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--ChHH-HhcceEEEccc
Confidence 357875 56899999999999999999999999999974 79999999987631000 0000 00112222222
Q ss_pred cccccc--------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 79 KSICHE--------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 79 ~~l~~~--------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
..++.. .......++++.+++. ...+.++.+||+||+|+ +..+|+.+
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111110 0011234567777773 46678899999999983 36788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD 177 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (183)
||....|+.++..+..++..+.. ..+++++||+++.+...||++++++-+
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~ 223 (258)
T PRK14241 174 EPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLE 223 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence 89999999999999999988753 378999999999999999999999743
No 170
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-26 Score=181.79 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=117.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++...++..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~~ 90 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT----LASL-RRQIGLVSQDVFLFND 90 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC----HHHH-HhhEEEeCCCCeeccc
Confidence 67875 568999999999999999999999999999999999999997654210 0000 1123333332211110
Q ss_pred ------------ccchHH---------HHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 ------------ALAFPC---------LERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 ------------~~~~~~---------l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
...... .+.++.+ ++....+.++.+||+||+|+ ++.+|+++ ||+.+-|
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 170 (234)
T cd03251 91 TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170 (234)
T ss_pred cHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 000111 2223333 45566778899999999983 47788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+...+..+. + ..+|+++|||++.+.. ||+++.|+
T Consensus 171 ~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~ 210 (234)
T cd03251 171 TESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLE 210 (234)
T ss_pred HHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEec
Confidence 999999999998775 3 5789999999999865 99999985
No 171
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.1e-27 Score=202.42 Aligned_cols=165 Identities=13% Similarity=0.030 Sum_probs=125.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .......++++++...++
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST----TAALAAGVAIIYQELHLVP 92 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH----HHHHhCCEEEEEechhccC
Confidence 357875 5699999999999999999999999999999999999999977532100 000001122222211000
Q ss_pred ---------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 83 ---------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 83 ---------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.........++++.+++....++++.+|||||+|+ +..+|+.+ ||....|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 172 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS 172 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 00111245678899999888899999999999983 37788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus 173 ~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~ 214 (501)
T PRK11288 173 AREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFK 214 (501)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999887654 7899999999999999999999997
No 172
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=5.2e-27 Score=186.58 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=125.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-----ccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-----LQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..... ..........++++++.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~-~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE-AERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCH-HHHHHHhhcceEEEeeC
Confidence 36777 55699999999999999999999999999999999999999986 432100 00000000123333322
Q ss_pred cc--cc----------------c----cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KS--IC----------------H----EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~--l~----------------~----~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
.. ++ . ........++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 10 00 0 00012345778889986 47788999999999983 36778876 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|+..+..+..++..+..+...+++++|||++.+...||++++++
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~ 226 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK 226 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 9999999999999999887766657899999999999999999999996
No 173
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=1.1e-26 Score=181.29 Aligned_cols=161 Identities=10% Similarity=-0.001 Sum_probs=122.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
++++++ |++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.... ....++++++...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~--------~~~~i~~~~q~~~ 91 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ--------FQKCVAYVRQDDI 91 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH--------hcccEEEeCCCCc
Confidence 567874 5699999999999999999999999999999 99999999997653210 0011222222211
Q ss_pred cccc-------------------c---cchHHHH-HHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 81 ICHE-------------------A---LAFPCLE-RIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 81 l~~~-------------------~---~~~~~l~-vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
++.. . ......+ .++.+++..+.+.++.+||+||+|+ ++.+|+.+ ||.
T Consensus 92 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~ 171 (226)
T cd03234 92 LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT 171 (226)
T ss_pred cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 1110 0 0011233 6788888888889999999999983 36677776 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (183)
...|+.++..+..++.....+ ..+++++||+++ .+.+.||++++++
T Consensus 172 ~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 172 SGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 999999999999999877554 789999999995 8999999999997
No 174
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=8.3e-27 Score=183.09 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=115.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. ....++++++...++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~-~~~~i~~~~q~~~~~~ 89 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP----AW-LRRQVGVVLQENVLFN 89 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH----HH-HhhcEEEEcCCchhcc
Confidence 457875 4589999999999999999999999999999999999999986542100 00 0011233333221111
Q ss_pred ------------cccchHHHHH---------HHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 ------------EALAFPCLER---------IYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ------------~~~~~~~l~v---------Le~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
........+. ++.+ ++....+.++.+|||||+|+ +..+|+.+ ||..+.
T Consensus 90 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~L 169 (237)
T cd03252 90 RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169 (237)
T ss_pred chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 0001111222 2222 34445567889999999983 47788887 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+...+..+. + ..+++++|||++++. .||+++.++
T Consensus 170 D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~ 210 (237)
T cd03252 170 DYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVME 210 (237)
T ss_pred CHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 9999999999998875 4 688999999999984 699999986
No 175
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-26 Score=199.33 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=124.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---- 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---- 79 (183)
+++|++ |++++||++||+||||||||||+++|+|+.+|++|+|.++|.++..... .......++++++..
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~~~q~~~~~~ 336 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA----NEAINHGFALVTEERRSTG 336 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH----HHHHHCCCEEcCCchhhCC
Confidence 457875 5699999999999999999999999999999999999999977643100 000000122222210
Q ss_pred -----------------cc------cc-cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 80 -----------------SI------CH-EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 80 -----------------~l------~~-~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
.. .. ........++++.+++. ...++++.+|||||+|+ ++.+|+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLD 416 (491)
T PRK10982 337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416 (491)
T ss_pred cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 00 00011245678888885 56799999999999983 36788876
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+..+ ..+|+|+|||++++.+.|||++.++
T Consensus 417 EPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~ 465 (491)
T PRK10982 417 EPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMS 465 (491)
T ss_pred CCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEE
Confidence 899999999999999999887665 7899999999999999999999995
No 176
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9.6e-27 Score=200.69 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=123.5
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-----
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK----- 79 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~----- 79 (183)
.+++ ||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... .......++++++..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~~ 342 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP----RDAIRAGIMLCPEDRKAEGI 342 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH----HHHHhCCCEEcCcCHhhCCC
Confidence 4666 45699999999999999999999999999999999999999876532100 000000111111110
Q ss_pred ----------------c------cccc-ccchHHHHHHHHcCC-CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 80 ----------------S------ICHE-ALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 80 ----------------~------l~~~-~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
. +... .......++++.+++ ....++++.+|||||+|+ ++.+|+.+ |
T Consensus 343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE 422 (501)
T PRK11288 343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE 422 (501)
T ss_pred cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 0 0000 001235678889999 478899999999999983 36788886 9
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+..+ ..+|+|+|||++++.+.||++++++
T Consensus 423 Pt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 423 PTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEE
Confidence 99999999999999999887655 7899999999999999999999996
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=7.8e-27 Score=186.98 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=124.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC--------CcEEEEEecCccccc--------cc------
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM--------SHKFAIYAVSLQKKI--------SV------ 61 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~--------~G~I~~~g~~~~~~~--------~~------ 61 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .+
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 467875 458999999999999999999999999999998 999999997654210 00
Q ss_pred --cchheeehhhhccCCCCc--cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------c---------Cch
Q 036195 62 --CSFILIRRAYFFKLPNLK--SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------I---------GEE 122 (183)
Q Consensus 62 --~~~~~l~~~~lg~lp~l~--~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~---------~~~ 122 (183)
...+..+.+.....+... ............++++.+++..+.++++.+||+||+|++ + .+|
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p 173 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCC
Confidence 000111111111000000 000000112356788899999888999999999999832 4 478
Q ss_pred hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 123 EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 123 ~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.+ ||+...|+.++..+..++..+..+...+++++|||++.+.+.||+++.|+
T Consensus 174 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~ 229 (272)
T PRK13547 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA 229 (272)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 887 89999999999999999998766657899999999999999999999996
No 178
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.1e-26 Score=180.48 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=118.5
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... .... ...++++++...++..
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~l~~~ 92 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG----LHDL-RSRISIIPQDPVLFSG 92 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC----HHHH-hhhEEEECCCCccccc
Confidence 68875 569999999999999999999999999999999999999998654210 0000 1123333333222210
Q ss_pred -----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 85 -----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
.......++++.+++.+.. +.++..||+||+|+ ++.+|+++ ||....|+
T Consensus 93 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~ 172 (221)
T cd03244 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172 (221)
T ss_pred hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1112344555666654332 46789999999983 47888887 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+.. ..+++++||+++.+.. ||+++.|+
T Consensus 173 ~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~ 211 (221)
T cd03244 173 ETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLD 211 (221)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEE
Confidence 999999999987754 3789999999999875 99999996
No 179
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=1e-26 Score=184.05 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=120.9
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-- 82 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-- 82 (183)
.+|+ ||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++..... ..+ ...++++++....+
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~----~~~-~~~i~~v~q~~~~~~~ 83 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSA----AEL-ARHRAYLSQQQTPPFA 83 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCH----HHH-hhheEEecccCccCCC
Confidence 3566 45699999999999999999999999999985 59999999987642100 000 00122222211000
Q ss_pred ----------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------cC-------chhhc---ccccc
Q 036195 83 ----------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IG-------EEEWW---NQLEW 130 (183)
Q Consensus 83 ----------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~-------~~~w~---~~l~~ 130 (183)
.........++++.+++....++++.+||+||+|++ .. +|+.+ ||+..
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~ 163 (248)
T PRK03695 84 MPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163 (248)
T ss_pred ccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence 000012356788999998888999999999999832 33 45776 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+..+..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus 164 LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~ 207 (248)
T PRK03695 164 LDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLK 207 (248)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999999887655 7899999999999999999999986
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.2e-27 Score=187.63 Aligned_cols=163 Identities=10% Similarity=0.058 Sum_probs=124.7
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|+++ ++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... .... ...++++++.. .++
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----~~~~-~~~i~~v~q~~~~~~~ 95 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN----VWNL-RRKIGMVFQNPDNQFV 95 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCC----HHHH-hcceEEEEECHHHhhc
Confidence 478755 68999999999999999999999999999999999999998764210 0000 01122222221 000
Q ss_pred c--------------ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 H--------------EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ~--------------~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. ... ...+.++++.+++..+.+.++.+||+||+|+ ++.+|+.+ ||..+.|+..
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~ 175 (277)
T PRK13642 96 GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175 (277)
T ss_pred cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0 000 1124677888999989999999999999983 47788876 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+|+++||+++.+. .||+++.++
T Consensus 176 ~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~ 214 (277)
T PRK13642 176 RQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK 214 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 999999998887666899999999999986 699999987
No 181
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-26 Score=183.90 Aligned_cols=165 Identities=12% Similarity=-0.007 Sum_probs=120.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... ..... ...++++++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~-~~~i~~~~q~ 93 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--DPIEV-RREVGMVFQY 93 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--ChHHH-hhceeEEecC
Confidence 467875 45899999999999999999999999999987 49999999987641000 00000 0123333332
Q ss_pred cccccc---------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195 79 KSICHE---------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 79 ~~l~~~---------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~-- 125 (183)
..++.. .......++++.+++. ...+.++.+||+||+|+ +..+|+.+
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 211110 0011235567777763 35678899999999983 47788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+.. ..+++++|||++.+.+.||++++++
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEE
Confidence 89999999999999999988754 3799999999999999999999986
No 182
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.3e-27 Score=175.14 Aligned_cols=145 Identities=20% Similarity=0.143 Sum_probs=113.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++... +......++++++...++.
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~~- 86 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE------PEEVKRRIGYLPEEPSLYE- 86 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc------hHhhhccEEEEecCCcccc-
Confidence 57774 56899999999999999999999999999999999999999866431 0001123445444433222
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..++.+++. ||+||+|+ ++.+|+.+ ||....|+..+..+..++..+..+ ..+++
T Consensus 87 -----~~tv~~~~~-----------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii 149 (173)
T cd03230 87 -----NLTVRENLK-----------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTIL 149 (173)
T ss_pred -----CCcHHHHhh-----------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 223333321 99999983 47788887 999999999999999999988666 68899
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++|||.+++...+|+++.++
T Consensus 150 i~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 150 LSSHILEEAERLCDRVAILN 169 (173)
T ss_pred EECCCHHHHHHhCCEEEEEe
Confidence 99999999999999999986
No 183
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-26 Score=183.25 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=121.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++|++ |++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... . .....++++++...+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~----~-~~~~~i~~~~q~~~l 90 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV----V-ALRKNVGMVFQQPNV 90 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH----H-HHhhhEEEEecCCcc
Confidence 57875 5689999999999999999999999999974 799999999987643100 0 000122333332211
Q ss_pred cc-----c---------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 82 CH-----E---------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 82 ~~-----~---------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
+. + .......++++.+++. .+.+.++.+||+||+|+ ++.+|+.+ ||+
T Consensus 91 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 10 0 0011245678888884 45678899999999983 36777776 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...|+..+..+...+..+.. ..+++++||+++.+.+.||++++|+
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH--NLSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEE
Confidence 99999999999999887753 6789999999999999999999996
No 184
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.1e-27 Score=180.95 Aligned_cols=161 Identities=13% Similarity=0.083 Sum_probs=136.6
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
++.+++ ||+|++|+++|++|||||||||++|+|.|++.|++|+|.++|.++... ....+||+|.-+.++
T Consensus 14 ~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~---------~~~rIGyLPEERGLy 84 (300)
T COG4152 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE---------IKNRIGYLPEERGLY 84 (300)
T ss_pred ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh---------hhhhcccChhhhccC
Confidence 345666 556999999999999999999999999999999999999999977542 235689999988888
Q ss_pred ccccch-------------------HHHHHHHHcCCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCcc
Q 036195 83 HEALAF-------------------PCLERIYVHGCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 83 ~~~~~~-------------------~~l~vLe~l~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~ 134 (183)
+..... ....+|+.+++....+.++.+||-|++| .+.-+|++. ||+++-||-
T Consensus 85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 754321 2456789999999999999999999776 347799996 899999998
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
....+...+..++.. ..+|+..||.++-|-..||++..++
T Consensus 165 N~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~ 204 (300)
T COG4152 165 NVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLK 204 (300)
T ss_pred hHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheec
Confidence 888888888877777 9999999999999999999998875
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-26 Score=199.42 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=124.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--- 79 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--- 79 (183)
+++++ ||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++..... .......++++++..
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~ 350 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP----QQAIAQGIAMVPEDRKRD 350 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH----HHHHHCCCEEeCcchhhC
Confidence 35787 55799999999999999999999999999998 599999999876532100 000000122222210
Q ss_pred ------------------ccc-----c-cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 80 ------------------SIC-----H-EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 80 ------------------~l~-----~-~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
.+. . ........++++.+++. ...++++.+|||||+|+ ++.+|+.+
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD 430 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 000 0 00112356788999996 57899999999999983 37788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+...|+..+..+..++..+..+ ..+|+++|||++++.+.|||+++++
T Consensus 431 EPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 431 EPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred CCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999999999999999999988755 7899999999999999999999986
No 186
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=1.2e-26 Score=180.79 Aligned_cols=167 Identities=17% Similarity=0.142 Sum_probs=120.8
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe--c--CccccccccchheeehhhhccCCCCc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA--V--SLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g--~--~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
+++++++ ++.+||+++|+||||||||||+++|+|+++|++|+|.+++ . ++..... ..........++++++..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP-REVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH-HHHHHHHhcceEEEeccc
Confidence 3678755 5899999999999999999999999999999999999984 2 3321000 000000001123333322
Q ss_pred ccccc-------------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 80 SICHE-------------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 80 ~l~~~-------------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
.++.. .......++++.+++.. +.++++.+||+||+|+ +..+|+.+ ||...
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11110 01123456788889876 5678999999999983 47788887 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.|+..+..+...+..+..+ ..+++++||+.+.+...||+++-+
T Consensus 180 LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 180 LDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999887655 789999999999999999998765
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1e-26 Score=181.70 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=116.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....++++++...++..
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~~~~ 91 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS----RKS-LRSMIGVVLQDTFLFSG 91 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC----HHH-HhhhEEEecCCchhhhh
Confidence 57875 458999999999999999999999999999999999999997654210 000 01123333333222110
Q ss_pred ------------ccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 ------------ALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 ------------~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.......++++.++ +....+.++.+||+||+|+ +..+|+++ ||+.+.|
T Consensus 92 tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 92 TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 01112223333333 3334456679999999983 48888887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+. + ..+++++||+++.+. .||++++++
T Consensus 172 ~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~ 211 (229)
T cd03254 172 TETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLD 211 (229)
T ss_pred HHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEe
Confidence 999999999998774 4 689999999999975 599999995
No 188
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=2.1e-26 Score=180.89 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=116.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ... ...++++++...++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~ 90 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL----RWL-RSQIGLVSQEPVLFD 90 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH----HHH-HhhEEEECCchhhhh
Confidence 358875 6689999999999999999999999999999999999999976542100 000 011233333221111
Q ss_pred ------------cccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 ------------EALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
........+.++.. ++....+.++.+||+||+|+ ++.+|+.+ ||+.+.
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gL 170 (238)
T cd03249 91 GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170 (238)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 00001111222222 33445667789999999983 47788887 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++.... + .++++++||+++++. .||+++.++
T Consensus 171 D~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 171 DAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-NADLIAVLQ 211 (238)
T ss_pred CHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEEEEEE
Confidence 9999999999998876 4 788999999999986 899999985
No 189
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.2e-26 Score=200.00 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=124.1
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--- 79 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--- 79 (183)
+++++ ||++.+||++||+||||||||||+|+|+|+++| ++|+|.++|+++..... .......++++++..
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~ 348 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP----AQAIRAGIAMVPEDRKRH 348 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH----HHHHhCCCEEcCcchhhC
Confidence 35787 556999999999999999999999999999995 89999999976632100 000001122222210
Q ss_pred ------------------cccc------cccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 80 ------------------SICH------EALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 80 ------------------~l~~------~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
.... ......+.++++.+++.. ..++++.+|||||+|+ ++.+|+.+
T Consensus 349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 428 (500)
T TIGR02633 349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428 (500)
T ss_pred CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 0000 000123567889999964 6789999999999983 36688887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus 429 EPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 429 EPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred CCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999999999999999999888665 7889999999999999999999996
No 190
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=1.4e-26 Score=183.45 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=123.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-----ccccccccchheeehhhhccCCCCc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-----LQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..... ..........++++++..
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE-AERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH-HHHHHhhhcceEEEEeCc
Confidence 5677 45689999999999999999999999999999999999999875 321100 000000000122222211
Q ss_pred c------------c------cc----cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 S------------I------CH----EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~------------l------~~----~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
. + +. ........++++.+++. ...+.++.+|||||+|+ ++.+|+.+ ||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0 00 00112346778889996 47888999999999983 47788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++.....+...+++|+||+++.+...||+++.++
T Consensus 176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~ 223 (253)
T TIGR02323 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223 (253)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999999987766557899999999999999999999986
No 191
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=7e-27 Score=185.61 Aligned_cols=165 Identities=14% Similarity=0.076 Sum_probs=123.1
Q ss_pred cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeehhhhcc
Q 036195 7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRRAYFFK 74 (183)
Q Consensus 7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~~~lg~ 74 (183)
+++++++ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.++..... .. ......+++
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~--~~-~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT--KL-LEGDVKVIV 91 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH--Hh-hhcccceee
Confidence 4777776 689999999999999999999999999999999996 66665532100 00 000011122
Q ss_pred CCCCccccc-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 75 LPNLKSICH-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 75 lp~l~~l~~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.++...... ........++++.+++....+.++.+||+||+|+ +..+|+.+ ||....|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 222111110 0112245778899999988899999999999983 36677776 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+ .++|+++|||++.+...||++++++
T Consensus 172 ~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 172 IKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC
Confidence 99999999999887654 6889999999999999999999996
No 192
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1.3e-26 Score=175.41 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=111.5
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
+++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ........++++++.... .
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~i~~~~q~~~~---~ 87 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS----PRDAIRAGIAYVPEDRKR---E 87 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC----HHHHHhCCeEEecCCccc---C
Confidence 666 4568999999999999999999999999999999999999998765320 000111234454443110 0
Q ss_pred cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 86 LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 86 ~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..++..++.+++..... ||+||+|+ +..+|+.+ ||....|+..+..+..++..+..+ ..++++
T Consensus 88 ~~~~~~t~~e~l~~~~~-------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii 159 (182)
T cd03215 88 GLVLDLSVAENIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLL 159 (182)
T ss_pred cccCCCcHHHHHHHHhh-------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 01111223332221110 99999983 47788887 899999999999999999877554 689999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+||+++.+.+.||+++.++
T Consensus 160 ~sh~~~~~~~~~d~v~~l~ 178 (182)
T cd03215 160 ISSELDELLGLCDRILVMY 178 (182)
T ss_pred EeCCHHHHHHhCCEEEEec
Confidence 9999999999999999986
No 193
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.92 E-value=1.1e-26 Score=174.53 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=110.8
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....++++++...+
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~--- 87 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD----PNE-LGDHVGYLPQDDEL--- 87 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC----HHH-HHhheEEECCCCcc---
Confidence 47775 568999999999999999999999999999999999999998664310 000 01234444443322
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
++ .++.+++ ||+||+|+ ++.+|+++ ||+..-|+..+..+..++.....+ ..+++
T Consensus 88 ---~~-~tv~~~l------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii 150 (173)
T cd03246 88 ---FS-GSIAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRI 150 (173)
T ss_pred ---cc-CcHHHHC------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 22 2444543 99999983 47888887 999999999999999999887654 78999
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++|||++++ ..||+++.++
T Consensus 151 ~~sh~~~~~-~~~d~v~~l~ 169 (173)
T cd03246 151 VIAHRPETL-ASADRILVLE 169 (173)
T ss_pred EEeCCHHHH-HhCCEEEEEE
Confidence 999999977 6899999986
No 194
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=9.4e-27 Score=185.76 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=121.9
Q ss_pred ccccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--ccccc-cchheeehhhhccCCCC
Q 036195 4 LYRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KKISV-CSFILIRRAYFFKLPNL 78 (183)
Q Consensus 4 ~~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~~~~-~~~~~l~~~~lg~lp~l 78 (183)
+.+++|+ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.... ..... ...+..+.+..... .
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~--~ 112 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKML--C 112 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHH--H
Confidence 4456777 5569999999999999999999999999999999999999885210 00000 00111111111100 0
Q ss_pred ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcc
Q 036195 79 KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ 149 (183)
Q Consensus 79 ~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~ 149 (183)
..............+++.+++....+.++.+||+||+|+ ++.+|+.+ ||+...|+..+..+...+..+..
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~- 191 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE- 191 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-
Confidence 001000011123456778889888999999999999983 37788886 89999999999999998887753
Q ss_pred cccCCCCCCceeeeeecccceEEEEe
Q 036195 150 TVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+++++||+++.+...||++++++
T Consensus 192 ~g~tiIiisH~~~~i~~~~d~i~~l~ 217 (264)
T PRK13546 192 QNKTIFFVSHNLGQVRQFCTKIAWIE 217 (264)
T ss_pred CCCEEEEEcCCHHHHHHHcCEEEEEE
Confidence 47899999999999999999999986
No 195
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.2e-26 Score=173.89 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=109.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .... ....++++++...+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~-~~~~i~~~~~~~~~--- 87 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----DLES-LRKNIAYVPQDPFL--- 87 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc----CHHH-HHhhEEEEcCCchh---
Confidence 57775 56899999999999999999999999999999999999999865421 0000 01224444433222
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
++ .++.+++ ||+||+|+ +..+|+.+ ||..+.|+..+..+..++..+.. ..+++
T Consensus 88 ---~~-~t~~e~l------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii 149 (171)
T cd03228 88 ---FS-GTIRENI------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVI 149 (171)
T ss_pred ---cc-chHHHHh------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEE
Confidence 22 2444443 99999983 47788887 99999999999999999987753 48899
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++||+++.+.. ||+++.++
T Consensus 150 ~~sh~~~~~~~-~d~~~~l~ 168 (171)
T cd03228 150 VIAHRLSTIRD-ADRIIVLD 168 (171)
T ss_pred EEecCHHHHHh-CCEEEEEc
Confidence 99999999877 99999985
No 196
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=1.2e-26 Score=176.53 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=114.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... ..... ...++++++.. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK--GLLER-RQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccccc--chHHH-HhhEEEEecChhhcc
Confidence 567875 5699999999999999999999999999999999999999977531100 00000 01223333221 01
Q ss_pred cc-----c---------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 82 CH-----E---------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 82 ~~-----~---------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+. + . ......++++.+++....++++.+||+||+|+ +..+|+.+ ||+...|+.
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 10 0 0 01134567888999988999999999999983 36788886 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeee
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEAT 164 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (183)
.+..+..++.....+ ..+|+++|||++++
T Consensus 162 ~~~~~~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence 999999999887655 78999999998764
No 197
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=2e-26 Score=199.47 Aligned_cols=168 Identities=14% Similarity=0.044 Sum_probs=125.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE-ecC---ccccccccchheeehhhhccCCCCc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY-AVS---LQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~---~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
+++|++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +.... ...... ....++++++..
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~-~~~~~~-~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PDGRGR-AKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc-hhhHHH-HhhhEEEEccCc
Confidence 358885 4599999999999999999999999999999999999996 532 11100 000000 001234444432
Q ss_pred ccccc------c------------cchHHHHHHHHcCCCC-----ccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICHE------A------------LAFPCLERIYVHGCPS-----LRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~~------~------------~~~~~l~vLe~l~L~~-----L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++.. . ....+.++++.+++.. +.++++.+|||||+|+ +..+|+.+ ||
T Consensus 375 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEP 454 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454 (520)
T ss_pred ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22111 0 0113456788889864 5789999999999983 37788886 99
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
....|+..+..+..++..+..+...+++++|||++++.+.||++++++
T Consensus 455 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~ 502 (520)
T TIGR03269 455 TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502 (520)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999988876668899999999999999999999996
No 198
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.7e-27 Score=174.86 Aligned_cols=170 Identities=13% Similarity=0.054 Sum_probs=133.6
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc----c----chh---eeehhh
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV----C----SFI---LIRRAY 71 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~----~----~~~---~l~~~~ 71 (183)
++++++++ +|.+||.+.++|||||||||||++++|+.+|+.|+|.++|+.+...... + .+| ...+..
T Consensus 17 ~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 45688754 6999999999999999999999999999999999999999977642110 0 000 111111
Q ss_pred hccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 72 FFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 72 lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
+--++..+..........+.+..+++....++.+-+|||||+|+ ++.+|..+ ||+.-.|.-+++..+.+
T Consensus 97 --fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel 174 (259)
T COG4525 97 --FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174 (259)
T ss_pred --HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence 11122223222223345778889999999999999999999983 58899986 88999999999999999
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
+-.+-.++...+++++||+|+.+=.++|+|+++=
T Consensus 175 Lldlw~~tgk~~lliTH~ieEAlflatrLvvlsp 208 (259)
T COG4525 175 LLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208 (259)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence 9998889999999999999999999999999874
No 199
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.5e-26 Score=220.97 Aligned_cols=163 Identities=17% Similarity=0.069 Sum_probs=131.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++++ +|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... . .....+++.||...++.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-----~-~~r~~IGy~pQ~~~L~~ 2025 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-----S-DVHQNMGYCPQFDAIDD 2025 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-----H-HHhhhEEEEeccccCCC
Confidence 4588855 58999999999999999999999999999999999999998774210 0 01123555555433322
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++...+++++.+|||||||+ +.++|+.+ ||....|+..
T Consensus 2026 ~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~s 2105 (2272)
T TIGR01257 2026 LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105 (2272)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 100 1123467888999999999999999999983 47888886 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+ .++|+++||+++++.+.|||+++++
T Consensus 2106 r~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~ 2144 (2272)
T TIGR01257 2106 RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMV 2144 (2272)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999888666 7899999999999999999999986
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=1.2e-26 Score=201.18 Aligned_cols=169 Identities=12% Similarity=0.012 Sum_probs=126.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+++ ++++||++||+||||||||||+|+|+|+++| ++|+|.++|.++...... .........+++++|.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ-TLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH-HHHHHhcCceEEEecC
Confidence 3688854 5899999999999999999999999999986 799999999876421000 0000000123333332
Q ss_pred cc--cc--------------------ccccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc--
Q 036195 79 KS--IC--------------------HEALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 79 ~~--l~--------------------~~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~-- 125 (183)
.. ++ .........++++.+++.. +.++++.+|||||+|+ ++.+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 10 00 0001123567888899975 4588999999999983 47788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||...-|+..+..+..++..+..+...+++++|||++.+...||+|++++
T Consensus 181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 99999999999999999988876667899999999999999999999997
No 201
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.3e-26 Score=182.87 Aligned_cols=164 Identities=15% Similarity=0.020 Sum_probs=120.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |++.+||++||+||||||||||+++|+|+++| ++|+|.++|.++..... . .......++++++..
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV--D-VVELRKNVGMVFQKP 102 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc--h-HHHHhhhEEEEecCC
Confidence 57775 45899999999999999999999999999985 89999999986542100 0 000011233333322
Q ss_pred cccc-----c---------c----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 80 SICH-----E---------A----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 80 ~l~~-----~---------~----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
.++. + . ......++++.+++. ...+.++.+||+||+|+ ++.+|+.+ ||+
T Consensus 103 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 182 (258)
T PRK14268 103 NPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT 182 (258)
T ss_pred ccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1111 0 0 011235577777773 45688899999999983 36778877 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...|+.++..+..++..+. + ..+++++|||++.+.+.||++++++
T Consensus 183 ~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 183 SALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred cccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999999999999998774 3 5889999999999999999999996
No 202
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-26 Score=181.30 Aligned_cols=164 Identities=14% Similarity=0.055 Sum_probs=132.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL---- 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~---- 86 (183)
+|+++.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|+-+.+.......+ .....+||+.|...+|++..
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp-~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP-PEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccC-hhhheeeeEeeccccccceEEecc
Confidence 4455555799999999999999999999999999999999998665432111111 12245677666555554321
Q ss_pred ---------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195 87 ---------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 87 ---------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
.....++.+.+|+.+|.++.+.+|||||||+ +...|+.+ |||.--|..-|..+.||+.-+..
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~ 176 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence 1134678899999999999999999999984 37788886 89999999999999999999999
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+-|+-+||-+.++.+.+|+|+.++
T Consensus 177 e~~IPIlYVSHS~~Ev~RLAd~vV~le 203 (352)
T COG4148 177 EINIPILYVSHSLDEVLRLADRVVVLE 203 (352)
T ss_pred hcCCCEEEEecCHHHHHhhhheEEEec
Confidence 988888999999999999999999987
No 203
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2e-26 Score=184.35 Aligned_cols=164 Identities=12% Similarity=0.024 Sum_probs=119.8
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... ..... ...++++++..
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~--~~~~~-~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV--DPVEV-RRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC--CHHHH-hhceEEEccCC
Confidence 57775 4689999999999999999999999999987 699999999986531000 00000 01233333322
Q ss_pred cccc-----------------cccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 80 SICH-----------------EALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 80 ~l~~-----------------~~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
.++. ........++++.+++ ....+.++.+||+||+|+ +..+|+++ ||+.
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 183 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111 0001123456777765 345788899999999983 47788887 8999
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+..+..+..++..+.. ..+++++||+++.+...||++++++
T Consensus 184 gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 184 ALDPISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 9999999999999987743 3789999999999999999999998
No 204
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.9e-26 Score=198.76 Aligned_cols=165 Identities=14% Similarity=0.069 Sum_probs=123.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|+ ||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..... .......++++++...+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~ 89 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI----RDTERAGIVIIHQELTL 89 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH----HHHHhCCEEEEeecccc
Confidence 45787 456999999999999999999999999999987 79999999976642100 00000112222221111
Q ss_pred cc-----------------------cccchHHHHHHHHcCCCCcc-CCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 82 CH-----------------------EALAFPCLERIYVHGCPSLR-KLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 82 ~~-----------------------~~~~~~~l~vLe~l~L~~L~-~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
+. ........++++.+++.... ++++.+|||||+|+ ++.+|+.+ ||+
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt 169 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPS 169 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 00 00112356788899997654 67899999999983 47788887 999
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...|+..+..+..++..+..+ ..+|+++|||++++...||+++.++
T Consensus 170 ~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 170 SSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 999999999999999887644 7899999999999999999999996
No 205
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.6e-26 Score=175.69 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=119.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH- 83 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~- 83 (183)
.++++ |+|.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ....++++++...++.
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~ 87 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--------VAEACHYLGHRNAMKPA 87 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchh--------hHhhcEEecCCCcCCCC
Confidence 46774 568999999999999999999999999999999999999987643110 0011222222111100
Q ss_pred --------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 84 --------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 84 --------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
........++++.+++..+.+.++.+||+||+|+ +..+|+.+ ||....|+.++..+.
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 167 (207)
T PRK13539 88 LTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167 (207)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0111235778899999888899999999999983 47788886 899999999999999
Q ss_pred cceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.++..+..+ ..+++++||+++++.. |+++-+
T Consensus 168 ~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 168 ELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred HHHHHHHHC-CCEEEEEeCCchhhcc--CcEEee
Confidence 999877555 7899999999999876 877654
No 206
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-26 Score=181.45 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=120.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..... ... .....++++++.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~ 95 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV--DVV-ELRRRVGMVFQK 95 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc--CHH-HHhhcEEEEecC
Confidence 3578755 589999999999999999999999999974 689999999987642100 000 000123333332
Q ss_pred cccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++.. .......++++.+++. .+.+.++.+|||||+|+ +..+|+.+ |
T Consensus 96 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE 175 (253)
T PRK14242 96 PNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175 (253)
T ss_pred CCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211110 0011234567777774 35678899999999983 36788886 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|+..+..+..++..+.. ..+|+++|||++.+.+.||+++.|+
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~ 222 (253)
T PRK14242 176 PASALDPIATQKIEELIHELKA--RYTIIIVTHNMQQAARVSDVTAFFY 222 (253)
T ss_pred CcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHHHHhCCEEEEEE
Confidence 9999999999999999988743 4789999999999999999999997
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3e-26 Score=181.48 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=120.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++++++ ++.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++...... .......++++++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~---~~~~~~~i~~v~q~ 94 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN---VVLLRAKVGMVFQK 94 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc---hHHHhhhEEEEecC
Confidence 3578755 589999999999999999999999999986 4799999999765421000 00000122333322
Q ss_pred ccccc--------------c------ccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 79 KSICH--------------E------ALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 79 ~~l~~--------------~------~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
..++. . .......++++.+++.. ..+.++.+||+||+|+ +..+|+.|
T Consensus 95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 0 00112346788888854 4567889999999983 36788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+.++..+..++..+. + ..+|+++||+++.+.+.||++++|+
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~ 222 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQ 222 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEE
Confidence 8999999999999999998774 3 6899999999999999999999997
No 208
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.3e-26 Score=181.05 Aligned_cols=163 Identities=16% Similarity=0.033 Sum_probs=120.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
++++++ |++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.... .... ...++++++.
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----~~~~-~~~i~~v~q~ 90 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD----VIEL-RRRVQMVFQI 90 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC----HHHH-hccEEEEecc
Confidence 357875 45899999999999999999999999999974 7999999998764210 0000 0112222222
Q ss_pred ccccc---------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195 79 KSICH---------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 79 ~~l~~---------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~-- 125 (183)
..++. ........++++.+++. ...+.++.+|||||+|+ +..+|+.+
T Consensus 91 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 170 (250)
T PRK14247 91 PNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA 170 (250)
T ss_pred CccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11110 00012345678888875 35688899999999983 36788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+..+..+...+..+. + ..+++++||+++++...||+++.++
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 171 DEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 8999999999999999998874 3 5789999999999999999999986
No 209
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1.6e-26 Score=174.07 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=102.0
Q ss_pred cccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 7 PHLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 7 ~~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
++++ ++++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ ++.++..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----------------~~~~q~~------ 70 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----------------VYKPQYI------ 70 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----------------EEEcccC------
Confidence 4454 568999999999999999999999999999999999999987532 2222110
Q ss_pred cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 86 LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 86 ~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
. ||+||+|+ +..+|+.+ ||+...|+..+..+...+.....+...++++
T Consensus 71 ~-----------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii 127 (177)
T cd03222 71 D-----------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127 (177)
T ss_pred C-----------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0 99999983 46788887 8999999999999999988776553478999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+||+++++.+.||+++.++
T Consensus 128 vsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 128 VEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred EECCHHHHHHhCCEEEEEc
Confidence 9999999999999999986
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=1.7e-26 Score=184.61 Aligned_cols=168 Identities=15% Similarity=-0.015 Sum_probs=126.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++++++ ++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... .... ....++++++.. .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~-~~~~-~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA-QRKA-FRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh-HHHH-HHhcEEEEEcChhhcc
Confidence 4688755 5899999999999999999999999999999999999999865421000 0000 001122222221 00
Q ss_pred cc----------------c----ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 82 CH----------------E----ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 82 ~~----------------~----~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
+. . .......++++.+++. .+.+.++.+||+||+|+ ++.+|+.+ ||+...
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L 182 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 00 0 0011356778888996 58899999999999983 47788887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+...+++++||+++.+...||+++.|+
T Consensus 183 D~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 226 (268)
T PRK10419 183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD 226 (268)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence 99999999999988776667899999999999999999999996
No 211
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.9e-26 Score=180.34 Aligned_cols=165 Identities=10% Similarity=-0.023 Sum_probs=120.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++ | ++|+|.++|.++..... .... ....++++++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~-~~~~i~~~~q~ 93 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV--DPVS-IRRRVGMVFQK 93 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--ChHH-hhccEEEEecC
Confidence 457875 5689999999999999999999999999986 4 69999999987642100 0000 00112232322
Q ss_pred cccccc--------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 79 KSICHE--------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 79 ~~l~~~--------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
..++.. .......++++.+++. .+.+.++.+||+||+|+ +..+|+.+
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111110 0012245667777774 35677899999999983 36788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+...|+.++..+...+..+..+ .+|+++||+++.+...||+++.++
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKEK--YTIIIVTHNMQQAARVSDYTAFFY 221 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC--CcEEEEECCHHHHHhhCCEEEEEE
Confidence 999999999999999999888643 689999999999999999999985
No 212
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.9e-26 Score=178.55 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=115.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... .... ...++++++...++.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~ 88 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT----LDSL-RRAIGVVPQDTVLFN 88 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC----HHHH-HhhEEEECCCChhhc
Confidence 347775 568999999999999999999999999999999999999997664310 0000 012233333222111
Q ss_pred c------------ccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. .......+.++.+ ++..+.+.++.+||+||+|+ +..+|+++ ||+.+.
T Consensus 89 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~L 168 (236)
T cd03253 89 DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168 (236)
T ss_pred chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0 0011112222222 33444566788999999983 48889997 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+.. ..+++++||+++.+.. ||+++.++
T Consensus 169 D~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~ 209 (236)
T cd03253 169 DTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLK 209 (236)
T ss_pred CHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEE
Confidence 99999999999987754 6789999999999865 99999986
No 213
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=1.8e-26 Score=200.14 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=125.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l 81 (183)
+++|+ ||++++||++||+||||||||||+|+|+|++ |++|+|+++|.++...... ..... ...++++++.. .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~-~~~~~-~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRR-QLLPV-RHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchh-hHHHh-hhceEEEEeCchhhc
Confidence 46888 5569999999999999999999999999998 5999999999765421000 00000 01122222211 00
Q ss_pred cc---------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 82 CH---------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 82 ~~---------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
+. ......+.++++.+++. ...++++.+|||||+|+ ++.+|+.+ ||...
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 00 00012346778889997 57899999999999983 37788887 99999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+..+..+..++..+..+...+|+++|||++.+...||+++.|+
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR 500 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 999999999999998876667899999999999999999999996
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=4.3e-26 Score=180.55 Aligned_cols=165 Identities=13% Similarity=-0.029 Sum_probs=119.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|++ |++++||++||+||||||||||+++|+|+ ++|++|+|.++|.++..... .......++++++....
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~~~~~~q~~~~ 95 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP----EERAHLGIFLAFQYPIE 95 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh----hhhheeeEEEEeccccc
Confidence 357775 56999999999999999999999999998 57999999999876543100 00000001111111000
Q ss_pred -------------c---------ccc----cchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195 82 -------------C---------HEA----LAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 82 -------------~---------~~~----~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~-- 125 (183)
+ ... ......++++.+++. .+.+.++. .|||||+|+ ++.+|+.+
T Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 175 (252)
T CHL00131 96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAIL 175 (252)
T ss_pred cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0 000 012345678889997 46777776 599999983 47788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (183)
||+...|+.++..+..++..+..+ ..+++++|||++.+... ||+++.++
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i~~l~ 226 (252)
T CHL00131 176 DETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKPDYVHVMQ 226 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhhCCEEEEEe
Confidence 899999999999999999877644 78899999999999875 99999986
No 215
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-26 Score=183.20 Aligned_cols=165 Identities=13% Similarity=0.022 Sum_probs=120.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..... . .......++++++.
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~--~-~~~~~~~i~~v~q~ 108 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL--D-VVELRARVGMVFQK 108 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc--c-hHHHhhceEEEecC
Confidence 3578754 5899999999999999999999999999975 89999999987642100 0 00000112222222
Q ss_pred ccccc--------------------cccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 79 KSICH--------------------EALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 79 ~~l~~--------------------~~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
..++. ........++++.+++.. ..+.++.+||+||+|+ +..+|+.+
T Consensus 109 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 109 PNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11110 000122456788888853 4577899999999983 36788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+...|+..+..+..++..+.. ..+|+++|||++.+...||++++++
T Consensus 189 EPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~ 236 (267)
T PRK14235 189 EPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFH 236 (267)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEE
Confidence 99999999999999999987754 3689999999999999999999997
No 216
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=2.4e-26 Score=196.18 Aligned_cols=167 Identities=16% Similarity=0.060 Sum_probs=123.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc--c-cchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS--V-CSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~--~-~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++++|+++||+||||||||||+++|+|+++|++|+|.++|.+..-... . ..++..+.+.+... ...
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~--~~~ 114 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGL--MMG 114 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhh--hcC
Confidence 457875 4589999999999999999999999999999999999998864210000 0 00111111111100 000
Q ss_pred ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195 81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV 151 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~ 151 (183)
...........++++.+++....++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+...+..+..+ .
T Consensus 115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~-G 193 (549)
T PRK13545 115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-G 193 (549)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC-C
Confidence 1011111234567888999988999999999999983 36778886 899999999999999998877544 7
Q ss_pred cCCCCCCceeeeeecccceEEEEe
Q 036195 152 ISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++|+++|||++.+...||++++|+
T Consensus 194 ~TIIIVSHdl~~i~~l~DrIivL~ 217 (549)
T PRK13545 194 KTIFFISHSLSQVKSFCTKALWLH 217 (549)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEE
Confidence 899999999999999999999996
No 217
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=2.6e-26 Score=198.83 Aligned_cols=170 Identities=15% Similarity=0.059 Sum_probs=124.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEe-----------------------cCcccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYA-----------------------VSLQKK 58 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g-----------------------~~~~~~ 58 (183)
+++|++ |++++||+++|+||||||||||+++|+|++ +|++|+|.+++ .++...
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 467875 569999999999999999999999999997 79999999973 111000
Q ss_pred -ccccc--hh--eeehhhhccCCCC-cccccc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChh
Q 036195 59 -ISVCS--FI--LIRRAYFFKLPNL-KSICHE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGK 113 (183)
Q Consensus 59 -~~~~~--~~--~l~~~~lg~lp~l-~~l~~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgG 113 (183)
..... .. ......++++++. ..++.. .....+.++++.+++..+.++++.+||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 172 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG 172 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence 00000 00 0001123333332 111110 00123566789999998889999999999
Q ss_pred hhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 114 RNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 114 qk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+|+ ++.+|+.+ ||+..-|+..+..+..++..+..+...+|+++|||++.+.+.||+++.|+
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~ 243 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE 243 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe
Confidence 9983 37788887 99999999999999999988766667899999999999999999999996
No 218
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-26 Score=185.02 Aligned_cols=164 Identities=11% Similarity=-0.009 Sum_probs=119.9
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |+|.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..... . .......++++++..
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~--~-~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT--D-EVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc--c-hHHhhhcEEEECCCC
Confidence 57775 5689999999999999999999999999864 499999999976542100 0 000012234444432
Q ss_pred ccccc--------------cc-----chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICHE--------------AL-----AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~~--------------~~-----~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++.. .. .....++++.+++ ....+.++.+|||||+|+ +..+|+++ ||
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 209 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP 209 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 22210 00 1123455666665 346678899999999983 47788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+..+ .+|+++|||++++.+.||++++++
T Consensus 210 t~gLD~~~~~~l~~~L~~~~~~--~tvIivsH~~~~~~~~~d~i~~L~ 255 (286)
T PRK14275 210 TSALDPKATAKIEDLIQELRGS--YTIMIVTHNMQQASRVSDYTMFFY 255 (286)
T ss_pred CccCCHHHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999877543 789999999999999999999997
No 219
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=5.3e-26 Score=179.56 Aligned_cols=165 Identities=15% Similarity=-0.043 Sum_probs=118.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCc--
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-- 79 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-- 79 (183)
+++++++ ++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++..... .......++++++..
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~ 89 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP----EDRAGEGIFMAFQYPVE 89 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH----HHHhhcceEEEecCchh
Confidence 3577755 58999999999999999999999999995 6999999999987642100 000000111111110
Q ss_pred ------------------cccc-cc-c----chHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195 80 ------------------SICH-EA-L----AFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 80 ------------------~l~~-~~-~----~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~-- 125 (183)
.... .. . .....+.++.++++ .+.++++. +||+||+|+ +..+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 90 IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0000 00 0 11234567778884 46667665 799999983 37788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (183)
||+...|+..+..+..++..+..+ ..+|+++|||++.+... +|++++++
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~ 220 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLY 220 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEE
Confidence 899999999999999998877654 68999999999998887 89999885
No 220
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.92 E-value=5.9e-26 Score=173.51 Aligned_cols=151 Identities=16% Similarity=0.071 Sum_probs=113.2
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++++++ ++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++... .....+++.++...+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~--------~~~~~i~~~~q~~~~ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR--------SFRKIIGYVPQDDIL 93 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH--------hhhheEEEccCcccC
Confidence 4678754 58999999999999999999999999999 99999999999876421 011234555554333
Q ss_pred cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
+......+....... ..+||+||+|+ ++.+|+.+ ||+...|+..+..+..++..+..+ ..
T Consensus 94 ~~~~t~~~~i~~~~~----------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~ 162 (194)
T cd03213 94 HPTLTVRETLMFAAK----------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GR 162 (194)
T ss_pred CCCCcHHHHHHHHHH----------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CC
Confidence 322222221111111 12899999983 36677776 899999999999999999887655 78
Q ss_pred CCCCCCceee-eeecccceEEEEe
Q 036195 153 SIPQPSYTYE-ATIRPRYELICID 175 (183)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~ 175 (183)
+++++||+++ .....||++++++
T Consensus 163 tiii~sh~~~~~~~~~~d~v~~l~ 186 (194)
T cd03213 163 TIICSIHQPSSEIFELFDKLLLLS 186 (194)
T ss_pred EEEEEecCchHHHHHhcCEEEEEe
Confidence 9999999997 6788999999986
No 221
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.9e-26 Score=193.04 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=130.0
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----------------ccccchhee
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----------------ISVCSFILI 67 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----------------~~~~~~~~l 67 (183)
++|+ +|++.+||++||+|.||||||||+|+|+|.++|++|+|.++|+.+... ......++.
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 4566 556999999999999999999999999999999999999999865421 122344556
Q ss_pred ehhhhccCCCC--ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee----cCchhhc---ccccccCcccc
Q 036195 68 RRAYFFKLPNL--KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL----IGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 68 ~~~~lg~lp~l--~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i----~~~~~w~---~~l~~~d~~~~ 136 (183)
+++.+++.|.. +.+.+..+.....++++.+++..-.+.++.+||.||+| +| ..+.+.+ ||..--.+...
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~ 181 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 66777777654 22333344456778899888854488999999999999 43 3344443 77777777667
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+.+-.++..++.+ ..+++.+||.|+++++.|||+.++
T Consensus 182 ~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 182 ERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEE
Confidence 7777788888877 999999999999999999999886
No 222
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.6e-26 Score=175.14 Aligned_cols=160 Identities=11% Similarity=-0.031 Sum_probs=114.8
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... .......+++.++...
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~------~~~~~~~i~~~~q~~~ 93 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF------AEKYPGEIIYVSEEDV 93 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc------hhhhcceEEEEecccc
Confidence 4677755 599999999999999999999999999999 8999999999876431 0011123445554433
Q ss_pred ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195 81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV 151 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~ 151 (183)
++......+.+...... ..+.++.+||+||+|+ ++.+|+.+ ||....|+.++..+..++..+..+..
T Consensus 94 ~~~~~tv~~~l~~~~~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 169 (202)
T cd03233 94 HFPTLTVRETLDFALRC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLK 169 (202)
T ss_pred cCCCCcHHHHHhhhhhh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 33222222221111111 1577889999999983 36677776 89999999999999999998766544
Q ss_pred cCCCC-CCceeeeeecccceEEEEe
Q 036195 152 ISIPQ-PSYTYEATIRPRYELICID 175 (183)
Q Consensus 152 ~~~~~-~~~~~~~~~~~~~~~~~~~ 175 (183)
..+++ ++|+.+.+.+.||++++++
T Consensus 170 ~t~ii~~~h~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 170 TTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred CEEEEEEcCCHHHHHHhCCeEEEEE
Confidence 55455 5667789999999999986
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2.2e-26 Score=171.36 Aligned_cols=133 Identities=15% Similarity=0.046 Sum_probs=105.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ........+++++ +
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~~~~~~~i~~~~------q 82 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS----PRDARRAGIAMVY------Q 82 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC----HHHHHhcCeEEEE------e
Confidence 367775 569999999999999999999999999999999999999997654210 0000001122211 1
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI 154 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
||+||+|+ +..+|+.+ ||+...|+..+..+..++..+..+ ..++
T Consensus 83 --------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~ti 135 (163)
T cd03216 83 --------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAV 135 (163)
T ss_pred --------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEE
Confidence 99999983 36777776 899999999999999999877654 7899
Q ss_pred CCCCceeeeeecccceEEEEe
Q 036195 155 PQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++|||++.+...||+++.++
T Consensus 136 ii~sh~~~~~~~~~d~~~~l~ 156 (163)
T cd03216 136 IFISHRLDEVFEIADRVTVLR 156 (163)
T ss_pred EEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999985
No 224
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.9e-26 Score=180.77 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=119.6
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+ ||++.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... .... ....++++++.
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~--~~~~-~~~~i~~~~q~ 93 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM--DLVE-LRKEVGMVFQQ 93 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc--hHHH-hhccEEEEecC
Confidence 46776 55699999999999999999999999999997 489999999986532100 0000 00112222222
Q ss_pred ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE 173 (251)
T PRK14251 94 PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE 173 (251)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 11110 0 0011234567777773 45678899999999983 47788886 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..... ..+|+++||+++.+.+.||++++++
T Consensus 174 P~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~ 220 (251)
T PRK14251 174 PTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLM 220 (251)
T ss_pred CCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEE
Confidence 9999999999999999987743 4789999999999999999999996
No 225
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.92 E-value=4.1e-26 Score=172.06 Aligned_cols=144 Identities=14% Similarity=0.038 Sum_probs=111.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... .......++++++...++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~-- 87 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL------EKALSSLISVLNQRPYLF-- 87 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH------HHHHHhhEEEEccCCeee--
Confidence 57874 56999999999999999999999999999999999999999765321 000112345555433222
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
+ .++.+++ +.+||+||+|+ ++.+|+.+ ||..+.|+..+..+...+..+. + ..+++
T Consensus 88 ----~-~tv~~~i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii 151 (178)
T cd03247 88 ----D-TTLRNNL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLI 151 (178)
T ss_pred ----c-ccHHHhh---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEE
Confidence 2 2334433 78999999983 47888887 8999999999999999988774 4 68899
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++||+++++. .+|++++++
T Consensus 152 ~~sh~~~~~~-~~d~~~~l~ 170 (178)
T cd03247 152 WITHHLTGIE-HMDKILFLE 170 (178)
T ss_pred EEecCHHHHH-hCCEEEEEE
Confidence 9999999875 699999986
No 226
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=8.2e-26 Score=173.36 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=116.0
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+.+|++|+|+++|.++.... .. ....++++++...++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-----~~-~~~~i~~~~q~~~~~~ 87 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL-----CT-YQKQLCFVGHRSGINP 87 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCH-----HH-HHhheEEeccccccCc
Confidence 357774 568999999999999999999999999999999999999998764210 00 0012333333221111
Q ss_pred c--------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 84 E--------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 84 ~--------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
. .......++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+.++..+.
T Consensus 88 ~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~ 167 (200)
T PRK13540 88 YLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167 (200)
T ss_pred CCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 0 011235678888899888899999999999983 47788876 899999999999999
Q ss_pred cceeecCcccccCCCCCCceeeeeec
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (183)
.++.....+ ..+++++||+.+.+-.
T Consensus 168 ~~l~~~~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 168 TKIQEHRAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHHc-CCEEEEEeCCchhccc
Confidence 999877544 7889999999887744
No 227
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=1.1e-25 Score=172.39 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=116.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++ ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... . .....++++++...++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~-~~~~~i~~~~q~~~~~~ 86 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-----D-EPHRNILYLGHLPGLKP 86 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-----H-HhhhheEEeccCccccc
Confidence 35777 4569999999999999999999999999999999999999998754311 0 00012233333221111
Q ss_pred c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
. .......++++.+++....++++.+||+||+|+ +..+|+.+ ||....|+..+..+
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 166 (198)
T TIGR01189 87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166 (198)
T ss_pred CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 0 001235677888999988899999999999983 37788887 89999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELI 172 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (183)
..++.....+ ..+++++||+..... |+|++
T Consensus 167 ~~~l~~~~~~-~~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 167 AGLLRAHLAR-GGIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred HHHHHHHHhC-CCEEEEEEccccccc--ceEEe
Confidence 9999877544 678999999985433 35554
No 228
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9e-26 Score=178.47 Aligned_cols=164 Identities=15% Similarity=0.016 Sum_probs=119.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.... . .......++++++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---~-~~~~~~~i~~~~q~ 91 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---D-VADLRIKVGMVFQK 91 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---c-hHHHHhheeEEecC
Confidence 467875 56899999999999999999999999999986 5999999997653100 0 00001122333332
Q ss_pred ccccc--------------cc-----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH--------------EA-----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~--------------~~-----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. .. ......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 92 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 171 (249)
T PRK14253 92 PNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171 (249)
T ss_pred CCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 21111 00 011233456666663 45678899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+..+ .+|+++||+++.+.+.||+++.|+
T Consensus 172 P~~~LD~~~~~~l~~~l~~~~~~--~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 172 PTSALDPIATHKIEELMEELKKN--YTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CCccCCHHHHHHHHHHHHHHhcC--CeEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999999999999988653 799999999999999999999996
No 229
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=9.8e-26 Score=173.70 Aligned_cols=157 Identities=17% Similarity=0.094 Sum_probs=114.2
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....++++++...++..
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~~~~~ 96 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP----LED-LRSSLTIIPQDPTLFSG 96 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC----HHH-HHhhEEEEecCCcccCc
Confidence 57875 458999999999999999999999999999999999999998654210 000 01223444443322211
Q ss_pred -----c---cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195 85 -----A---LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT 147 (183)
Q Consensus 85 -----~---~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~ 147 (183)
. ..+...++.+.++ .+.++.+||+||+|+ +..+|+.+ ||+...|+..+..+..++....
T Consensus 97 tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 97 TIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF 172 (207)
T ss_pred cHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 0 0011122333333 356789999999883 36788886 8999999999999999988764
Q ss_pred cccccCCCCCCceeeeeecccceEEEEe
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+ ..+++++||+++++.. ||++++++
T Consensus 173 -~-~~tiii~th~~~~~~~-~d~v~~l~ 197 (207)
T cd03369 173 -T-NSTILTIAHRLRTIID-YDKILVMD 197 (207)
T ss_pred -C-CCEEEEEeCCHHHHhh-CCEEEEEE
Confidence 4 6889999999999876 89999996
No 230
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.4e-26 Score=178.89 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=120.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..... . .......++++++.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~~~q~ 93 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV--D-VVELRKRVGMVFQK 93 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc--c-HHHHHhheEEEecC
Confidence 357775 56899999999999999999999999999875 89999999987642100 0 00000122333332
Q ss_pred ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 173 (251)
T PRK14270 94 PNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE 173 (251)
T ss_pred CCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21111 0 0011234567777763 45778899999999983 36678886 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++.....+ .+++++||+++.+...||+++.|+
T Consensus 174 P~~~LD~~~~~~l~~~L~~~~~~--~tiiivsH~~~~~~~~~d~v~~l~ 220 (251)
T PRK14270 174 PTSALDPISTLKIEDLMVELKKE--YTIVIVTHNMQQASRVSDYTAFFL 220 (251)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC--CeEEEEEcCHHHHHHhcCEEEEEE
Confidence 99999999999999999877543 789999999999999999999996
No 231
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-26 Score=181.31 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=119.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..... .... ....++++++.
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI--NVVN-LRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc--cHHH-HhccEEEEecC
Confidence 457875 5689999999999999999999999999864 799999999987642100 0000 01123333332
Q ss_pred cccccc-----c--------------cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICHE-----A--------------LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~~-----~--------------~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++.. . ......++++.+++. ...+.++.+||+||+|+ ++.+|+++ |
T Consensus 111 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 190 (268)
T PRK14248 111 PNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE 190 (268)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 211110 0 001234456666663 45678899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+..+ .+|+++|||++.+...||+++.++
T Consensus 191 Pt~~LD~~~~~~l~~~l~~~~~~--~tiii~tH~~~~~~~~~d~v~~l~ 237 (268)
T PRK14248 191 PASALDPISNAKIEELITELKEE--YSIIIVTHNMQQALRVSDRTAFFL 237 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHhcC--CEEEEEEeCHHHHHHhCCEEEEEE
Confidence 99999999999999999887543 689999999999999999999996
No 232
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=6.6e-26 Score=173.97 Aligned_cols=153 Identities=12% Similarity=-0.047 Sum_probs=113.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++++++ |++.+||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.... ........++++++....
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP----PEERARLGIFLAFQYPPE 88 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC----HHHHhhCcEEEeecChhh
Confidence 357775 56999999999999999999999999999 5799999999998765321 001111224555554333
Q ss_pred cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
+... .+.+.+ +....+||+||+|+ ++.+|+.+ ||....|+.++..+...+..+..+ ..
T Consensus 89 ~~~~------~~~~~l------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~ 155 (200)
T cd03217 89 IPGV------KNADFL------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GK 155 (200)
T ss_pred ccCc------cHHHHH------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CC
Confidence 3221 122221 23346899999983 37788877 899999999999999888876544 68
Q ss_pred CCCCCCceeeeeec-ccceEEEEe
Q 036195 153 SIPQPSYTYEATIR-PRYELICID 175 (183)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~ 175 (183)
+++|+||+++.+.+ .+|+++.++
T Consensus 156 tiii~sh~~~~~~~~~~d~i~~l~ 179 (200)
T cd03217 156 SVLIITHYQRLLDYIKPDRVHVLY 179 (200)
T ss_pred EEEEEecCHHHHHHhhCCEEEEEE
Confidence 99999999998887 799999986
No 233
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=9.6e-26 Score=191.92 Aligned_cols=168 Identities=15% Similarity=0.062 Sum_probs=129.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
++++ ||++.+||++||+|.|||||||+.++|.|++++. +|+|.|+|+++...... ....+....+++++|...
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~-~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER-EMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH-HHHHhccccEEEEecCch
Confidence 4666 5679999999999999999999999999999887 89999999865432100 001111122233333210
Q ss_pred --cc--------------------ccccchHHHHHHHHcCCCCccC--CCCCCCChhhhhe------ecCchhhc---cc
Q 036195 81 --IC--------------------HEALAFPCLERIYVHGCPSLRK--LPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 81 --l~--------------------~~~~~~~~l~vLe~l~L~~L~~--~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
+. .........++++.+++++-.. +++++|||||+|+ ++++|+.+ ||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 00 0111224678899999986554 4999999999993 58999997 99
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+-|+.++..+..++..+..+..++++++|||+..+-..||||+++.
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~ 229 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence 999999999999999999999999999999999999999999999875
No 234
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-25 Score=178.56 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=122.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++++ +|++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..... . .......++++++.
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~v~q~ 97 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV--D-PVVVRRYIGMVFQQ 97 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc--c-hHhhhhceEEEecC
Confidence 35777 456999999999999999999999999999986 79999999987642100 0 00001123333332
Q ss_pred ccccc-----c------------ccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 79 KSICH-----E------------ALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 79 ~~l~~-----~------------~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
..++. + .......++++.+++.. ..+.++.+||+||+|+ +..+|+.+ ||.
T Consensus 98 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 177 (261)
T PRK14263 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPC 177 (261)
T ss_pred CccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 21111 0 00123456778888743 3457889999999983 47788887 899
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD 177 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (183)
...|+..+..+..++..+.. ..+++++||+++.++..||+++.+++|
T Consensus 178 sgLD~~~~~~l~~~l~~~~~--~~tii~isH~~~~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 178 SALDPIATRRVEELMVELKK--DYTIALVTHNMQQAIRVADTTAFFSVD 224 (261)
T ss_pred ccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEecc
Confidence 99999999999999998753 478999999999999999999999755
No 235
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-25 Score=179.82 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=120.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||++||+||||||||||+++|+|+++ |++|+|.++|.++..... .... ....++++++.
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~v~q~ 109 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI--NVYE-MRKHIGMVFQR 109 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC--ChHH-HhcceEEEecC
Confidence 467774 4689999999999999999999999999986 589999999987632100 0000 00122333332
Q ss_pred ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 110 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 189 (267)
T PRK14237 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE 189 (267)
T ss_pred CccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11110 0 0112234567777773 45688899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+.. ..+++++||+++.+.+.||++++|+
T Consensus 190 Pt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~ 236 (267)
T PRK14237 190 PASALDPISTMQLEETMFELKK--NYTIIIVTHNMQQAARASDYTAFFY 236 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhcCEEEEEE
Confidence 9999999999999999988753 4789999999999999999999996
No 236
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.91 E-value=5.2e-26 Score=176.22 Aligned_cols=159 Identities=13% Similarity=-0.033 Sum_probs=110.0
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-EEecCccccccccch---heeehhhhccCCCCccc
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-IYAVSLQKKISVCSF---ILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~~~~~~~~---~~l~~~~lg~lp~l~~l 81 (183)
+|+ ||++++||+++|+||||||||||+++|+|+++|++|+|. +++..+.-......+ +..+.+.+.. . .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~--~---~ 76 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMA--S---L 76 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHH--H---H
Confidence 566 456999999999999999999999999999999999997 766533210000011 1111111100 0 0
Q ss_pred cccccchH-HHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee-ecCccc
Q 036195 82 CHEALAFP-CLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI-ITTPQT 150 (183)
Q Consensus 82 ~~~~~~~~-~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~-~~~~~~ 150 (183)
+. ..... ...+.+..+++...+.++.+||+||+|+ ++.+|+++ ||+...|+..+..+...+. ..+ +
T Consensus 77 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~- 153 (213)
T PRK15177 77 YG-LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q- 153 (213)
T ss_pred cC-CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C-
Confidence 00 00111 2233455677778889999999999983 47788886 6778889888888777653 332 2
Q ss_pred ccCCCCCCceeeeeecccceEEEEe
Q 036195 151 VISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+++++||+++.+...||++++++
T Consensus 154 -~~ii~vsH~~~~~~~~~d~i~~l~ 177 (213)
T PRK15177 154 -KGLIVLTHNPRLIKEHCHAFGVLL 177 (213)
T ss_pred -CcEEEEECCHHHHHHhcCeeEEEE
Confidence 468999999999999999999986
No 237
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.9e-26 Score=179.69 Aligned_cols=165 Identities=14% Similarity=-0.020 Sum_probs=120.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..... ... .....++++++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~ 96 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF--DIL-ELRRKIGMVFQT 96 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc--cHH-HHhhceEEEeec
Confidence 357775 56899999999999999999999999999987 59999999976532100 000 000112222222
Q ss_pred ccccc--------------c-----ccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH--------------E-----ALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~--------------~-----~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. . .......++++.+++ ....+.++.+|||||+|+ +..+|+.+ |
T Consensus 97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11110 0 001224556777776 345788899999999983 37788887 9
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+...+..+. + ..+++++||+++++...||+++.++
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 177 PTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999998885 3 4789999999999999999999985
No 238
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-25 Score=177.61 Aligned_cols=165 Identities=14% Similarity=-0.015 Sum_probs=118.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
++++++ |++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..... .... ....++++++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~ 92 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI--DVNQ-LRKRVGMVFQQ 92 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--chHH-HhccEEEEecC
Confidence 357775 55899999999999999999999999999763 69999999987642100 0000 00112222222
Q ss_pred ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. . .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 93 ~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (250)
T PRK14240 93 PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11110 0 0011234556666653 45678899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+.. ..+++++|||++.+.+.||++++|+
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14240 173 PTSALDPISTLKIEELIQELKK--DYTIVIVTHNMQQASRISDKTAFFL 219 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCHHHHHhhCCEEEEEE
Confidence 9999999999999999987743 4789999999999999999999996
No 239
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=1.1e-25 Score=196.89 Aligned_cols=157 Identities=11% Similarity=-0.024 Sum_probs=120.7
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc----ccccccchheeehhhhccCCCCcccccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ----KKISVCSFILIRRAYFFKLPNLKSICHEAL 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~ 86 (183)
++++.+||++||+||||||||||+|+|+|+++|++|+|.++ ..+. ........++.+.+.... . .+ ..
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~-~----~~--~~ 430 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSIT-D----DL--GS 430 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHh-h----hc--Ch
Confidence 56789999999999999999999999999999999999875 1111 000000111111111110 0 00 01
Q ss_pred chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.....++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+..+..+..++..+..+...+++++
T Consensus 431 ~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 510 (590)
T PRK13409 431 SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510 (590)
T ss_pred HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2235678999999999999999999999983 37788887 89999999999999999998877668899999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++...|||++.++
T Consensus 511 sHD~~~~~~~aDrvivl~ 528 (590)
T PRK13409 511 DHDIYMIDYISDRLMVFE 528 (590)
T ss_pred eCCHHHHHHhCCEEEEEc
Confidence 999999999999999986
No 240
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=7.2e-26 Score=177.02 Aligned_cols=164 Identities=15% Similarity=0.032 Sum_probs=124.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-----------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK----------- 79 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~----------- 79 (183)
||+|++|+++|++|||||||||++|+++|++.|++|.|.++|.++........ ......++...++.
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~--~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL--RSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH--HHHHHHhhhhheeeeechhhhhHHH
Confidence 67799999999999999999999999999999999999999987654210000 00000111111110
Q ss_pred -----cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceee
Q 036195 80 -----SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLII 145 (183)
Q Consensus 80 -----~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~ 145 (183)
.+.......+.....+.+++....+.|++.||-|||++ +.-.|+-+ ||.-.-|.+++..+..+++.
T Consensus 122 ~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 122 LKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence 00000111234566788899999999999999999972 34456654 78889999999999999999
Q ss_pred cCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 146 TTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
....+.++|+.+||++.-+-+-||||+-||-
T Consensus 202 ~n~~~~aTVllTTH~~~di~~lc~rv~~I~~ 232 (325)
T COG4586 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQ 232 (325)
T ss_pred HHHhhCceEEEEecchhhHHHhhhheEEeeC
Confidence 9999999999999999999999999999983
No 241
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-25 Score=193.90 Aligned_cols=166 Identities=16% Similarity=0.102 Sum_probs=117.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-cc----ccccccchheeehhhhcc----
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-LQ----KKISVCSFILIRRAYFFK---- 74 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~~----~~~~~~~~~~l~~~~lg~---- 74 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.+++.. +. ....+...+..+.+.++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 93 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELW 93 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHH
Confidence 468875 5699999999999999999999999999999999999998632 10 000000111111111110
Q ss_pred -----------CCCCcc---------------ccccccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc
Q 036195 75 -----------LPNLKS---------------ICHEALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE 121 (183)
Q Consensus 75 -----------lp~l~~---------------l~~~~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~ 121 (183)
.+.... ...........++++.+++... .++++.+|||||+|+ ++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~ 173 (530)
T PRK15064 94 EVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSN 173 (530)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcC
Confidence 000000 0000011245678889999764 467899999999983 3678
Q ss_pred hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 122 EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 122 ~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.+ ||....|+..+..+..++. +...+|+|+|||++.+.+.||+++.|+
T Consensus 174 p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 174 PDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred CCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 8876 8999999999999888875 236789999999999999999999997
No 242
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.8e-26 Score=199.11 Aligned_cols=169 Identities=11% Similarity=0.011 Sum_probs=125.9
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc----ccc--cchh---eeehhhhccC
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK----ISV--CSFI---LIRRAYFFKL 75 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~----~~~--~~~~---~l~~~~lg~l 75 (183)
++|+ ||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ... .... ......++++
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 6887 556899999999999999999999999999999999999987533110 000 0000 0000123333
Q ss_pred CCCc--ccccc--------------------ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhh
Q 036195 76 PNLK--SICHE--------------------ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEW 124 (183)
Q Consensus 76 p~l~--~l~~~--------------------~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w 124 (183)
+|.. .++.. .....+.++++.++++. ..++++.+|||||+|+ ++.+|+.
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l 189 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 3321 11100 00123556788899953 5788999999999983 4788888
Q ss_pred c---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 125 W---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 125 ~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+ ||....|+..+..+..++..+..+...+|+++|||++.+.+.||||+.++
T Consensus 190 LllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred EEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 7 99999999999999999998877668899999999999999999999997
No 243
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-25 Score=177.17 Aligned_cols=165 Identities=12% Similarity=0.008 Sum_probs=120.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcC---CCC--CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM---FSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl---~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.++..... . .......++++++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~ 92 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV--Q-VDELRKNVGMVFQR 92 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--c-HHHHhhheEEEecC
Confidence 35776 566999999999999999999999999997 454 59999999987642100 0 00000123333332
Q ss_pred ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .......++++.+++. ...+.++.+||+||+|+ ++.+|+.+ |
T Consensus 93 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14245 93 PNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21111 0 0011245677888875 35678899999999983 37788887 9
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+. + .++|+++|||++.+.+.||+++.++
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14245 173 PASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFY 219 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 999999999999999998874 3 4889999999999999999999996
No 244
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=6e-26 Score=181.61 Aligned_cols=168 Identities=13% Similarity=0.020 Sum_probs=128.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-C----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-D----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
.++++ ||++++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++.+.... ....++...+++.+|.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~-~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK-ELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH-HHHhhcCceEEEEEcC
Confidence 35677 55699999999999999999999999999997 4 579999999976542100 0011111223333332
Q ss_pred cccccc------------------c-----cchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc-
Q 036195 79 KSICHE------------------A-----LAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW- 125 (183)
Q Consensus 79 ~~l~~~------------------~-----~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~- 125 (183)
..-.-+ . ....+.++++.+++++ ..+.++++|||||+|+ ++++|+.+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 100000 0 0123567889999975 6789999999999994 48999997
Q ss_pred --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
||..--|..++..+..++..++.+...+++++|||+..|...||||++.
T Consensus 177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VM 227 (316)
T COG0444 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM 227 (316)
T ss_pred eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEE
Confidence 8999999999999999999999999999999999999999999999875
No 245
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.1e-26 Score=179.66 Aligned_cols=164 Identities=11% Similarity=0.001 Sum_probs=119.9
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... .... ....++++++..
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~~ 103 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ--DIAL-LRAKVGMVFQKP 103 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc--chHH-HhcceEEEecCC
Confidence 57875 5689999999999999999999999999986 589999999987632100 0000 001122222211
Q ss_pred cccc-------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICH-------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~-------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++. ........++++.+++. ...+.++.+||+||+|+ ++.+|++| ||
T Consensus 104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 183 (260)
T PRK10744 104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183 (260)
T ss_pred ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 1110 00012345677888863 45678899999999983 47788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+...+..+.. ..+|+++||+++.+...+|+++.++
T Consensus 184 t~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 229 (260)
T PRK10744 184 CSALDPISTGRIEELITELKQ--DYTVVIVTHNMQQAARCSDYTAFMY 229 (260)
T ss_pred CccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999987753 4689999999999999999999996
No 246
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.4e-25 Score=171.19 Aligned_cols=150 Identities=13% Similarity=-0.026 Sum_probs=110.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++++++ |++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++... ....++++++...+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~---------~~~~i~~~~q~~~~ 90 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN---------FQRSTGYVEQQDVH 90 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHH---------hhhceEEecccCcc
Confidence 457875 568999999999999999999999999986 48999999999865310 01234454544333
Q ss_pred cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
+......+....... . .+||+||+|+ ++.+|+.+ ||....|+..+..+...+.....+ ..
T Consensus 91 ~~~~tv~~~l~~~~~------~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~ 159 (192)
T cd03232 91 SPNLTVREALRFSAL------L----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQ 159 (192)
T ss_pred ccCCcHHHHHHHHHH------H----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CC
Confidence 322222222111110 1 1899999983 47778876 899999999999999999877654 78
Q ss_pred CCCCCCceee-eeecccceEEEEe
Q 036195 153 SIPQPSYTYE-ATIRPRYELICID 175 (183)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~ 175 (183)
+++++||+++ .+.+.||++++++
T Consensus 160 tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 160 AILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred EEEEEEcCChHHHHhhCCEEEEEc
Confidence 9999999999 4789999999985
No 247
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-25 Score=179.00 Aligned_cols=164 Identities=15% Similarity=0.013 Sum_probs=119.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..... .......++++++.
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~ 109 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD----VLEFRRRVGMLFQR 109 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch----hHHHhhheEEeccC
Confidence 357775 56899999999999999999999999999985 79999999976542100 00001122333332
Q ss_pred ccccc-----c----------ccc----hHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E----------ALA----FPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~----------~~~----~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + ... ....++++.+++.. +.+.++.+||+||+|+ ++.+|+.+ |
T Consensus 110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE 189 (276)
T PRK14271 110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE 189 (276)
T ss_pred CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 21111 0 000 01235567777753 4567889999999983 36778776 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+..+ .+|+++||+++.+...||+++.|+
T Consensus 190 Pt~~LD~~~~~~l~~~L~~~~~~--~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 190 PTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CcccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999998877643 799999999999999999999996
No 248
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.8e-25 Score=169.77 Aligned_cols=146 Identities=11% Similarity=0.072 Sum_probs=110.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc------cc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC------HE 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~------~~ 84 (183)
||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ...++++++...++ .+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---------KPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---------hhhEEeccCCcCCCccCCHHHH
Confidence 5679999999999999999999999999999999999999998764310 00122222211110 00
Q ss_pred --------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195 85 --------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT 147 (183)
Q Consensus 85 --------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~ 147 (183)
.......++++.+++....++++.+||+||+|+ ++.+|+++ ||+...|+.++..+..++....
T Consensus 91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 170 (195)
T PRK13541 91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170 (195)
T ss_pred HHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 011234667788899888899999999999983 37788887 8999999999999998887543
Q ss_pred cccccCCCCCCceeeeeec
Q 036195 148 PQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~ 166 (183)
. ..++++++||+.+.+..
T Consensus 171 ~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 171 N-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred h-CCCEEEEEeCCccccch
Confidence 3 37899999999987654
No 249
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=1.8e-25 Score=213.57 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=128.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++++ ++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... .. ....+++.|+...++.
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~-----~~-~r~~IG~~pQ~~~L~~ 1016 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL-----DA-VRQSLGMCPQHNILFH 1016 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchH-----HH-HhhcEEEEecCCcCCC
Confidence 4688855 58999999999999999999999999999999999999998764310 00 0112333333222211
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. ....++.++++.+++.+.+++++.+|||||||+ +.++|+.+ ||....|+..
T Consensus 1017 ~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~s 1096 (2272)
T TIGR01257 1017 HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096 (2272)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 1 011235678899999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++...+ + .++|+++||+++++...|||+++++
T Consensus 1097 r~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~ 1134 (2272)
T TIGR01257 1097 RRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIIS 1134 (2272)
T ss_pred HHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999999998884 3 7899999999999999999999986
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2e-25 Score=192.07 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=122.3
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--- 79 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--- 79 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++...... .. ....++++++..
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~---~~-~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI---WD-IKKHIGYVSSSLHLD 348 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH---HH-HHhhceEECHHHHhh
Confidence 34777 556899999999999999999999999998875 699999999754211000 00 000111111100
Q ss_pred -------------------cccc---cccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 -------------------SICH---EALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 -------------------~l~~---~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
..+. ......+.++++.+++.. +.++++.+|||||+|+ +..+|+.+ ||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 0000 000123567889999987 8899999999999983 47788887 99
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeec-ccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR-PRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 175 (183)
+...|+..+..+..++..+..+...+|+++|||++++.. .||++++++
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~ 477 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVP 477 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEec
Confidence 999999999999999998876634569999999999997 699999985
No 251
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-25 Score=178.35 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=119.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..... ..... ...++++++.
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~v~q~ 101 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV--DLVEL-RKNIGMVFQK 101 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc--CHHHH-hhceEEEecC
Confidence 357775 5689999999999999999999999999987 3 69999999987642100 00000 0122333322
Q ss_pred ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .......++++.+++. ...+.++.+||+||+|+ ++.+|+.+ |
T Consensus 102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE 181 (259)
T PRK14274 102 GNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE 181 (259)
T ss_pred CcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11111 0 0011234567777774 35678899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+.. ..+++++||+++.+.+.||++++++
T Consensus 182 Pt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~ 228 (259)
T PRK14274 182 PTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFY 228 (259)
T ss_pred CcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 9999999999999999988753 4789999999999999999999996
No 252
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=6.5e-26 Score=169.77 Aligned_cols=159 Identities=14% Similarity=0.003 Sum_probs=122.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe-cCccccccccchheeehhhhccCCCCcccccc-----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA-VSLQKKISVCSFILIRRAYFFKLPNLKSICHE----- 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~----- 84 (183)
||++.+||.-+|||||||||||+|.+|+|-.+|+.|+++|+| .++.+.. -.......+++-.|..++|.+
T Consensus 25 s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~----e~~IAr~GIGRKFQ~PtVfe~ltV~e 100 (249)
T COG4674 25 SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP----EHRIARAGIGRKFQKPTVFENLTVRE 100 (249)
T ss_pred EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC----HHHHHHhccCccccCCeehhhccHHH
Confidence 566999999999999999999999999999999999999999 6665421 111111222332222222211
Q ss_pred ----------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e----ecCchhhc---ccccccCc
Q 036195 85 ----------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V----LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 ----------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~----i~~~~~w~---~~l~~~d~ 133 (183)
....++.++++..++.+.++.+...||-|||| + ++.+|..+ ||+.++-+
T Consensus 101 NLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd 180 (249)
T COG4674 101 NLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD 180 (249)
T ss_pred HHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcH
Confidence 11224678899999999999999999999999 3 48889886 88888877
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.....-.++..++.. ++|+.+.||+++|..++++|-|+-
T Consensus 181 ~Et~~taeLl~~la~~--hsilVVEHDM~Fvr~~A~~VTVlh 220 (249)
T COG4674 181 AETEKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLH 220 (249)
T ss_pred HHHHHHHHHHHHHhcC--ceEEEEeccHHHHHHhhheeEEEe
Confidence 6666666677776655 789999999999999999999984
No 253
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-25 Score=177.43 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=119.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..... . .......++++++.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~ 95 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA--D-VVALRRKIGMVFQR 95 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc--c-hhhhhceEEEEecC
Confidence 3577755 599999999999999999999999999976 3 48999999987643100 0 00000122333332
Q ss_pred ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. . .......++++.+++. ...+.++.+||+||+|+ ++.+|+.+ |
T Consensus 96 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (253)
T PRK14261 96 PNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175 (253)
T ss_pred CccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21110 0 0011234556666663 34678899999999983 47788887 9
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+..+ .+++++||+++.+...+|+++.|+
T Consensus 176 P~~gLD~~~~~~l~~~l~~~~~~--~tvii~sh~~~~~~~~~d~v~~l~ 222 (253)
T PRK14261 176 PCSALDPIATAKIEDLIEDLKKE--YTVIIVTHNMQQAARVSDYTGFMY 222 (253)
T ss_pred CcccCCHHHHHHHHHHHHHHhhC--ceEEEEEcCHHHHHhhCCEEEEEE
Confidence 99999999999999999887643 799999999999999999999986
No 254
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.3e-25 Score=175.49 Aligned_cols=165 Identities=13% Similarity=0.022 Sum_probs=117.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++++++ ++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... . .......++++++.
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~ 93 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--D-PVAMRRRVGMVFQK 93 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--C-HHHhhceeEEEecc
Confidence 4678755 58999999999999999999999999999874 8999999987642100 0 00000123333332
Q ss_pred ccccccc----------------cc----hHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---
Q 036195 79 KSICHEA----------------LA----FPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 79 ~~l~~~~----------------~~----~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~--- 125 (183)
..++... .. ....++++.+++ ....+.++.+||+||+|+ +..+|+.+
T Consensus 94 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2111110 00 012223444443 345678899999999983 37788887
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+...|+..+..+..++..+.. ..+++++||+++.+...||+++.++
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14272 174 EPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFL 221 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 89999999999999999988753 4889999999999999999999995
No 255
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=3.3e-25 Score=165.51 Aligned_cols=137 Identities=16% Similarity=0.069 Sum_probs=105.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++++++...++
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------------~~i~~~~q~~~~~- 76 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------------EDLLFLPQRPYLP- 76 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------------ceEEEECCCCccc-
Confidence 3577754 58999999999999999999999999999999999998763 1234444433221
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI 154 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
..++.+++... ++.+||+||+|+ +..+|+.+ ||+...|+..+..+..++... ..++
T Consensus 77 ------~~tv~~nl~~~-----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~ti 141 (166)
T cd03223 77 ------LGTLREQLIYP-----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITV 141 (166)
T ss_pred ------cccHHHHhhcc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEE
Confidence 12333433322 578999999983 47788887 899999999999998888754 3789
Q ss_pred CCCCceeeeeecccceEEEEe
Q 036195 155 PQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++|||++. .+.||+++.++
T Consensus 142 iivsh~~~~-~~~~d~i~~l~ 161 (166)
T cd03223 142 ISVGHRPSL-WKFHDRVLDLD 161 (166)
T ss_pred EEEeCChhH-HhhCCEEEEEc
Confidence 999999985 57999998874
No 256
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=1.7e-25 Score=179.33 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=121.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.... ...+ ...++++|+...++.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~q~~~lf~ 90 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP----LQKW-RKAFGVIPQKVFIFS 90 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCC----HHHH-hhhEEEECCCcccch
Confidence 3578755 599999999999999999999999999997 8999999998764310 0000 123344444333322
Q ss_pred -----c------ccchHHHHHHHHcCCCCccCCCCCC-----------CChhhhhe------ecCchhhc---ccccccC
Q 036195 84 -----E------ALAFPCLERIYVHGCPSLRKLPFSL-----------ESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 -----~------~~~~~~l~vLe~l~L~~L~~~~~~~-----------LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
+ .......++++.+++....+..+.. ||+||+|+ +..+|+.+ ||....|
T Consensus 91 ~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 91 GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 1 1122456778888998777777766 99999983 47788876 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.++..++..+.... + .++|+++||+++++.. |||+++++
T Consensus 171 ~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~-~dri~vl~ 210 (275)
T cd03289 171 PITYQVIRKTLKQAF-A-DCTVILSEHRIEAMLE-CQRFLVIE 210 (275)
T ss_pred HHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHHh-CCEEEEec
Confidence 999999999998653 3 6899999999988765 99999996
No 257
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-25 Score=179.61 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=118.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... .... ....++++++.
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~--~~~~-~~~~i~~v~q~ 128 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV--DPVA-LRRRIGMVFQK 128 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--chHh-hhccEEEEecC
Confidence 357875 5689999999999999999999999999987 689999999986532100 0000 00122333332
Q ss_pred cccccc-----------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195 79 KSICHE-----------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 79 ~~l~~~-----------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l 128 (183)
..++.. .....+.++++.+++. ...+.++.+||+||+|+ +..+|+.+ ||.
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPt 208 (285)
T PRK14254 129 PNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA 208 (285)
T ss_pred CccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 211110 0011345667777774 35678899999999983 37788887 999
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELIC 173 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (183)
...|+..+..+...+..+..+ .+++++|||++.+.+.||++++
T Consensus 209 s~LD~~~~~~l~~~L~~~~~~--~tiii~tH~~~~i~~~~dri~v 251 (285)
T PRK14254 209 SALDPVATSKIEDLIEELAEE--YTVVIVTHNMQQAARISDKTAV 251 (285)
T ss_pred CCCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHhhcCEEEE
Confidence 999999999999999888654 6899999999999999999764
No 258
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.6e-25 Score=178.36 Aligned_cols=164 Identities=13% Similarity=0.000 Sum_probs=119.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..... . .......++++++..
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~--~-~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI--N-SVKLRRQVGMVFQRP 110 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc--h-hHHHhhcEEEEccCC
Confidence 57774 56899999999999999999999999999863 69999999987642100 0 000011233444332
Q ss_pred cccc-----cc------------cchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 80 SICH-----EA------------LAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 80 ~l~~-----~~------------~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
.++. +. ......++++.+++ ....+.++.+||+||+|+ +..+|+.+ ||+.
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 190 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS 190 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 2211 00 01112345666665 345678899999999983 47788887 8999
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+..+..+..++..+.. ..+|+++|||++.+.+.||++++|+
T Consensus 191 ~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 191 ALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999988764 3789999999999999999999996
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=6.7e-25 Score=168.68 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=108.3
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc---ccccccchheeehhhhccCCCCccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ---KKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++|+++ ++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +. .....+..+..+.+... .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~--~----- 90 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFG--K----- 90 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE-EEEEecCchhccCcHHHHhccC--C-----
Confidence 688855 59999999999999999999999999999999999999872 11 00000011111111110 0
Q ss_pred cccccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195 82 CHEALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
........++++.++ +....+.++.+||+||+|+ ++.+|+.+ ||+...|+..+..+..
T Consensus 91 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 168 (204)
T cd03250 91 --PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168 (204)
T ss_pred --CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000111222222222 2334566788999999983 48888887 8999999998887776
Q ss_pred -ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 142 -KLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++.....+ ..+++++||+.+.+.. ||+++.++
T Consensus 169 ~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~ 201 (204)
T cd03250 169 NCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLD 201 (204)
T ss_pred HHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEe
Confidence 45544444 7899999999999988 99999885
No 260
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=1e-25 Score=184.71 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=115.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-----------------
Q 036195 22 LYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE----------------- 84 (183)
Q Consensus 22 liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~----------------- 84 (183)
|+||||||||||+++|+|+++|++|+|.++|+++.... + ....++++++...++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-----P--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC
Confidence 68999999999999999999999999999998764310 0 00122333332211111
Q ss_pred --ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccC
Q 036195 85 --ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVIS 153 (183)
Q Consensus 85 --~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 153 (183)
.......++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+..++..+..+...+
T Consensus 74 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 153 (325)
T TIGR01187 74 RAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT 153 (325)
T ss_pred HHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 001234678899999999999999999999983 47788887 8999999999999999999887766889
Q ss_pred CCCCCceeeeeecccceEEEEe
Q 036195 154 IPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++++|||++++++.||++++++
T Consensus 154 iiivTHd~~e~~~~~d~i~vl~ 175 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSDRIAIMR 175 (325)
T ss_pred EEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999996
No 261
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-25 Score=177.39 Aligned_cols=166 Identities=12% Similarity=-0.018 Sum_probs=120.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++++++ ++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..... .... ....++++++.
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~ 96 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI--NINR-LRRQIGMVFQR 96 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc--chHh-hhhheEEEecc
Confidence 3577754 5899999999999999999999999999985 48999999986632100 0000 00122333332
Q ss_pred ccccc-----c-------------cc-chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E-------------AL-AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~-------------~~-~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .. .....++++.+++ ....+.++.+||+||+|+ ++.+|+.+ |
T Consensus 97 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 176 (259)
T PRK14260 97 PNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176 (259)
T ss_pred cccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 21111 0 00 1123456677776 346778899999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
|....|+.++..+..++..+..+ .+++++||+++.+...||++++++-
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~--~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 177 PCSALDPIATMKVEELIHSLRSE--LTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred CCccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHhcCeEEEEec
Confidence 99999999999999999887543 7999999999999999999999973
No 262
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.3e-25 Score=173.46 Aligned_cols=159 Identities=18% Similarity=0.063 Sum_probs=118.7
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--- 80 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--- 80 (183)
..+|+ ||++.+||.+||||+||||||||+|+|+|.++|++|+|.+.|+-..- -.+..++-|++..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l----------i~lg~Gf~pelTGreN 109 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL----------IELGAGFDPELTGREN 109 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh----------hhcccCCCcccchHHH
Confidence 45676 55699999999999999999999999999999999999999963211 0022222232211
Q ss_pred ---------ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195 81 ---------ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 81 ---------l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
+..........++++..++.++.++|+..+|.||+-+ +.-+|+-+ |-+.--|++=+..-...
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 1112223456788999999999999999999999752 36677775 44666676666665666
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.....+. ..|+++|||+..+-+.||++|-++
T Consensus 190 l~e~~~~~-~tiv~VSHd~~~I~~~Cd~~i~l~ 221 (249)
T COG1134 190 LNELVEKN-KTIVLVSHDLGAIKQYCDRAIWLE 221 (249)
T ss_pred HHHHHHcC-CEEEEEECCHHHHHHhcCeeEEEe
Confidence 66665553 899999999999999999999886
No 263
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=6.6e-25 Score=191.41 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=117.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c----cccccccchheeehhhhccCC--
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L----QKKISVCSFILIRRAYFFKLP-- 76 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~----~~~~~~~~~~~l~~~~lg~lp-- 76 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++|++|+|.+++.. + +........+..+.+..+...
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~ 99 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVK 99 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence 4688754 699999999999999999999999999999999999986421 1 110000011122211111000
Q ss_pred -------CC---cccc----------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------e
Q 036195 77 -------NL---KSIC----------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------L 118 (183)
Q Consensus 77 -------~l---~~l~----------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i 118 (183)
.. .... .......+.++++.+++.. .++++.+|||||+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al 178 (556)
T PRK11819 100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLL 178 (556)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHH
Confidence 00 0000 0001224566788888864 688999999999983 4
Q ss_pred cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 119 IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 119 ~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+|+.+ ||...-|+..+..+..++.... .+|+++|||++.+...||++++|+
T Consensus 179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviiisHd~~~~~~~~d~i~~l~ 234 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAVTHDRYFLDNVAGWILELD 234 (556)
T ss_pred hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEEeCCHHHHHhhcCeEEEEe
Confidence 7788887 8999999999999988887653 489999999999999999999998
No 264
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=1.4e-25 Score=196.23 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=123.4
Q ss_pred ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeehhhhccC
Q 036195 8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRRAYFFKL 75 (183)
Q Consensus 8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~~~lg~l 75 (183)
+|+++. +++||++||+||||||||||+|+|+|+++|++|+|. ++|.++++... ... .....+++.
T Consensus 89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~--~~~-~~~~~~~~~ 165 (590)
T PRK13409 89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK--KLY-NGEIKVVHK 165 (590)
T ss_pred eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH--HHh-ccCcceeec
Confidence 677664 899999999999999999999999999999999997 88877643100 000 000111111
Q ss_pred CCC----cccc-----cc----ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 76 PNL----KSIC-----HE----ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 76 p~l----~~l~-----~~----~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
++. ..++ .. .......++++.+++....++++.+|||||+|+ ++.+|+.+ ||....|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 111 1010 00 011235678899999999999999999999983 36788886 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+.. ..+++++|||++.+...+|+|++++
T Consensus 246 ~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 246 RQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999988755 7889999999999999999999986
No 265
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-25 Score=176.49 Aligned_cols=164 Identities=12% Similarity=-0.008 Sum_probs=118.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CC---CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SD---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
+++++ |++++||+++|+||||||||||+++|+|+. +| ++|+|.++|.++..... ..... ...++++++..
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~v~q~~ 95 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT--DTVDL-RKEIGMVFQQP 95 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc--chHhh-hhcEEEEecCC
Confidence 57775 568999999999999999999999999995 46 59999999986632100 00000 01223333322
Q ss_pred cccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++. + .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ ||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14239 96 NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEP 175 (252)
T ss_pred ccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111 0 0011234456677653 35678899999999983 36788886 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+.. ..+|+++|||++.+.+.||++++++
T Consensus 176 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14239 176 TSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFL 221 (252)
T ss_pred ccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEE
Confidence 999999999999999988753 3789999999999999999999996
No 266
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-25 Score=176.96 Aligned_cols=164 Identities=12% Similarity=-0.002 Sum_probs=118.0
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|+ ||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... .... ....++++++..
T Consensus 24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~~ 100 (264)
T PRK14243 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV--DPVE-VRRRIGMVFQKP 100 (264)
T ss_pred EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc--ChHH-HhhhEEEEccCC
Confidence 5777 45689999999999999999999999999986 489999999976631000 0000 001123333221
Q ss_pred cccc-----c------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 80 SICH-----E------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 80 ~l~~-----~------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
.++. + .......++++.+++. ...+.++.+||+||+|+ +..+|+.+ ||..
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 180 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1110 0 0011223445666653 35678899999999983 36788887 8999
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+..+..+..++..+..+ .+|+++||+++.+...||++++|+
T Consensus 181 ~LD~~~~~~l~~~L~~~~~~--~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 181 ALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred cCCHHHHHHHHHHHHHHhcC--CEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999887654 689999999999999999999997
No 267
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=2.3e-25 Score=162.67 Aligned_cols=117 Identities=16% Similarity=0.056 Sum_probs=99.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++++ |++++||+++|+||||||||||+++|+|+++|++|+|+++|. ..++++++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------~~i~~~~~------- 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------VKIGYFEQ------- 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------EEEEEEcc-------
Confidence 57764 568999999999999999999999999999999999999874 12333332
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
||+||+|+ +..+|+.+ ||+...|+..+..+..++..+ ..+++
T Consensus 71 -------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til 121 (144)
T cd03221 71 -------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVI 121 (144)
T ss_pred -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEE
Confidence 99999883 47788886 899999999999998888755 25899
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++||+++.+.+.||++++++
T Consensus 122 ~~th~~~~~~~~~d~v~~l~ 141 (144)
T cd03221 122 LVSHDRYFLDQVATKIIELE 141 (144)
T ss_pred EEECCHHHHHHhCCEEEEEe
Confidence 99999999999999999985
No 268
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-25 Score=191.02 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=117.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc----ccc--cc-chheeehhhhccCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK----KIS--VC-SFILIRRAYFFKLP 76 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----~~~--~~-~~~~l~~~~lg~lp 76 (183)
+++|+ ||++++||+++|+||||||||||+++|+|+++|++|+|.+++...-. ... +. ..+..+.+ ...
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~--~~~- 408 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM--SQW- 408 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHH--HHh-
Confidence 35777 45699999999999999999999999999999999999998742100 000 00 00111100 000
Q ss_pred CCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195 77 NLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT 146 (183)
Q Consensus 77 ~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~ 146 (183)
. ..........++++.+++. ...++++.+|||||+|+ +..+|+.+ ||....|+..+..+..++...
T Consensus 409 --~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 409 --R--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred --c--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 0 0011123456789999984 67899999999999983 37788887 899999999999998888765
Q ss_pred CcccccCCCCCCceeeeeecccceEEEEe
Q 036195 147 TPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+++++|||.+++...||++++|+
T Consensus 485 ----~~tvi~vsHd~~~~~~~~d~i~~l~ 509 (530)
T PRK15064 485 ----EGTLIFVSHDREFVSSLATRIIEIT 509 (530)
T ss_pred ----CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2489999999999999999999996
No 269
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-25 Score=174.19 Aligned_cols=165 Identities=15% Similarity=0.026 Sum_probs=118.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
++++++ |++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..... .... ....++++++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~--~~~~-~~~~i~~~~q~ 92 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL--DVTE-YRKKVGMVFQK 92 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh--hHHH-hhhhEEEEecC
Confidence 467774 56899999999999999999999999999874 89999999976532100 0000 00112222222
Q ss_pred ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. . .......++++.+++. .+.+.++.+||+||+|+ +..+|+.+ |
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 11110 0 0011234556777764 34788899999999983 36778876 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|+.++..+..++..+.. ..+++++||+++.+...||++++++
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14262 173 PTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMY 219 (250)
T ss_pred CccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999988753 4789999999999999999999986
No 270
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.1e-25 Score=176.49 Aligned_cols=165 Identities=12% Similarity=-0.008 Sum_probs=120.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... ..... ...++++++.
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~--~~~~~-~~~i~~v~q~ 114 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV--DVAEL-RRRVGMVFQR 114 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc--CHHHH-hccEEEEecC
Confidence 357775 5689999999999999999999999999987 489999999987642100 00000 0122233322
Q ss_pred ccccc-----c---------c-----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E---------A-----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~---------~-----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + . ......++++.+++. ...+.++.+||+||+|+ +..+|+.+ |
T Consensus 115 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 194 (272)
T PRK14236 115 PNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194 (272)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 11111 0 0 011244566777774 35678899999999983 37788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+.. ..+++++||+++.+.+.||++++++
T Consensus 195 Pt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~ 241 (272)
T PRK14236 195 PTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMY 241 (272)
T ss_pred CcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 9999999999999999988854 4789999999999999999999997
No 271
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=8.7e-25 Score=169.67 Aligned_cols=167 Identities=10% Similarity=-0.093 Sum_probs=115.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE-ATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc-ccchhhcceEEEEcCCCcccc
Confidence 457775 45899999999999999999999999999999999999998865421000 000000112334444322221
Q ss_pred c-----------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. .......++++.+++... .+.++..||+||+|+ ++.+|+++ ||....|
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 0 001122344555554321 345788999999983 47788886 8999999
Q ss_pred ccccccccc--ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSS--KLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+.. ++..+..+ ..+++++||+.+.+ ..||++++++
T Consensus 173 ~~~~~~l~~~~ll~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l~ 215 (218)
T cd03290 173 IHLSDHLMQEGILKFLQDD-KRTLVLVTHKLQYL-PHADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCEEEEEeCChHHH-hhCCEEEEec
Confidence 998888877 66655443 78999999999987 5799998885
No 272
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=6.7e-25 Score=191.36 Aligned_cols=161 Identities=14% Similarity=0.015 Sum_probs=116.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc------cc-ccccchheeehhhhccCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ------KK-ISVCSFILIRRAYFFKLP 76 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~~-~~~~~~~~l~~~~lg~lp 76 (183)
+++|+++ +|.+||++||+||||||||||+++|+|+++|++|+|.+++ +.. .. ......+..+.+.+..
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~-- 413 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGL-- 413 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhc--
Confidence 3577754 5899999999999999999999999999999999999843 211 00 0000011111111110
Q ss_pred CCccccccccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195 77 NLKSICHEALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT 146 (183)
Q Consensus 77 ~l~~l~~~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~ 146 (183)
...... .......++++.+++.. ..++++.+|||||+|+ +..+|+.+ ||....|+..+..+..++...
T Consensus 414 ~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 414 DIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF 491 (556)
T ss_pred cccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 000000 01123456789999964 6789999999999983 47788887 899999999999999988876
Q ss_pred CcccccCCCCCCceeeeeecccceEEEEe
Q 036195 147 TPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
. .+++++|||++.+.+.||+++.|+
T Consensus 492 ~----~tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 492 P----GCAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred C----CeEEEEECCHHHHHHhCCEEEEEE
Confidence 3 368999999999999999999986
No 273
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-25 Score=176.85 Aligned_cols=166 Identities=13% Similarity=-0.018 Sum_probs=119.9
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... . .......++++++..
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV--N-LNRLRRQVSMVHPKP 97 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc--c-hHHhhccEEEEecCC
Confidence 57775 569999999999999999999999999999985 8999999876531100 0 000001122222211
Q ss_pred cccc--------------c--c---cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICH--------------E--A---LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~--------------~--~---~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++. . . ......++++.+++. .+.+.++.+||+||+|+ +..+|+.+ ||
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1100 0 0 011234566777763 36788999999999983 36677776 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+..+...+|+++|||++.+...||++++++
T Consensus 178 ~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 999999999999999987755447899999999999999999999997
No 274
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5e-25 Score=174.47 Aligned_cols=165 Identities=15% Similarity=-0.006 Sum_probs=119.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+++ ++.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .... ....++++++.
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~--~~~~-~~~~i~~v~q~ 93 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL--DVVN-LRKRVGMVFQQ 93 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc--ChHH-hhceEEEEecC
Confidence 3577754 58999999999999999999999999999987 6999999986532100 0000 00122333332
Q ss_pred cccccc---------------c----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICHE---------------A----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~~---------------~----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++.. . ......++++.+++. .+.+.++.+||+||+|+ ++.+|+.+ |
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 173 (251)
T PRK14249 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE 173 (251)
T ss_pred CccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211110 0 011233345556653 45788999999999983 47788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+..+..+..++..+. + ..+|+++||+++.+...||++++|+
T Consensus 174 Pt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 174 PCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLL 220 (251)
T ss_pred CCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEe
Confidence 999999999999999998774 3 5899999999999999999999996
No 275
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.7e-25 Score=173.85 Aligned_cols=163 Identities=18% Similarity=0.055 Sum_probs=118.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe------cCccccccccchheeehhhhccCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA------VSLQKKISVCSFILIRRAYFFKLPN 77 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g------~~~~~~~~~~~~~~l~~~~lg~lp~ 77 (183)
+++++++ ++.+||+++|+||||||||||+++|+|+.+|++|+|.++| .++.... ... ....++++++
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~----~~~-~~~~i~~~~q 97 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID----AIK-LRKEVGMVFQ 97 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC----HHH-HhcceEEEcc
Confidence 4577755 5889999999999999999999999999999997777665 3332100 000 0012233332
Q ss_pred Ccccccc---------------ccc-----hHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195 78 LKSICHE---------------ALA-----FPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 78 l~~l~~~---------------~~~-----~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~-- 125 (183)
...++.. ... ....++++.+++. ...+.++..||+||+|+ +..+|+.+
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llll 177 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLM 177 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2211110 000 1235667778875 35677889999999983 47788886
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|..++..+..++..+.. .++++++||+++.+.+.||++++++
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~ 226 (257)
T PRK14246 178 DEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLY 226 (257)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEE
Confidence 89999999999999999987754 3899999999999999999999997
No 276
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=8.4e-25 Score=173.87 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=115.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++++ ++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..... .. ....++++++...++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~----~~-~~~~i~~v~q~~~l~~ 108 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL----HT-LRSRLSIILQDPILFS 108 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH----HH-HhhhEEEECCCCcccc
Confidence 3578754 589999999999999999999999999999999999999987643100 00 0112233333222211
Q ss_pred c-----------ccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. .......++++.+ ++....+.++..||+||+|+ +..+|+++ ||+.+.|
T Consensus 109 ~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 188 (257)
T cd03288 109 GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188 (257)
T ss_pred cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 0 0011122222222 34445556778999999983 47788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+. + ..+++++||+++.+.. ||+++.++
T Consensus 189 ~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~ 228 (257)
T cd03288 189 MATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLS 228 (257)
T ss_pred HHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEE
Confidence 999999998887653 3 5889999999999865 99999996
No 277
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-24 Score=192.67 Aligned_cols=165 Identities=16% Similarity=0.015 Sum_probs=118.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCC-----
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL----- 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l----- 78 (183)
+++|++ |+|.+|+++||+||||||||||||+|+|+++|++|+|.++|........ ...+......++++++.
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~-q~~~~~~~~~~~~v~~~~~~~~ 92 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN-QETPALPQPALEYVIDGDREYR 92 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEe-cCCCCCCCCHHHHHHHhhHHHH
Confidence 467875 5699999999999999999999999999999999999998753100000 00000000001111000
Q ss_pred ------------------cccc-------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc-
Q 036195 79 ------------------KSIC-------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW- 125 (183)
Q Consensus 79 ------------------~~l~-------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~- 125 (183)
..+. .......+.++++.+++. ...++++.+|||||+++ ++.+|+.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL 172 (638)
T PRK10636 93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172 (638)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 0000 001123466789999996 57899999999999983 47788887
Q ss_pred --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||....|+.++..+..++... ..+|+++|||.+++.+.||+++.|+
T Consensus 173 LDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 173 LDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred EcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 899999999999888887654 3689999999999999999999997
No 278
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.1e-25 Score=177.66 Aligned_cols=164 Identities=15% Similarity=-0.014 Sum_probs=117.2
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|++ |++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..... . .......++++++..
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY--S-VEELRTNVGMVFQKP 114 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc--c-HHHHhhhEEEEecCC
Confidence 57774 5699999999999999999999999999997 699999999976532100 0 000001223333322
Q ss_pred cccc-----c---------cc-----chHHHHHHHHcC----CCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICH-----E---------AL-----AFPCLERIYVHG----CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~-----~---------~~-----~~~~l~vLe~l~----L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++. + .. .....++++.++ +....+.++.+||+||+|+ ++.+|+.+ ||
T Consensus 115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEP 194 (271)
T PRK14238 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP 194 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1111 0 00 011233444443 3445678899999999983 36788887 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+.. ..+++++|||++.+.+.||+++.|+
T Consensus 195 t~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~ 240 (271)
T PRK14238 195 TSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFL 240 (271)
T ss_pred CCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 999999999999999988754 3789999999999999999999986
No 279
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.5e-25 Score=193.96 Aligned_cols=163 Identities=18% Similarity=0.090 Sum_probs=116.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc--cCCCCccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF--KLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg--~lp~l~~l 81 (183)
+++|+++ +|.+||++||+||||||||||+++|+|+++|++|+|.+++. . ..++........+... .+......
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~--~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-I--KLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-E--EEEEecCcchhhCCccchHHHHHHHh
Confidence 4578755 58999999999999999999999999999999999998632 1 0010000000000000 00000000
Q ss_pred cccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195 82 CHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV 151 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~ 151 (183)
........+.++++.+++. ...++++.+|||||+++ +..+|+.+ ||....|+.++..+...+... +
T Consensus 402 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-- 477 (638)
T PRK10636 402 APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-- 477 (638)
T ss_pred CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C--
Confidence 1111123456788999996 47889999999999983 36678876 899999999999999998766 2
Q ss_pred cCCCCCCceeeeeecccceEEEEe
Q 036195 152 ISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+|+++|||++++.+.||++++++
T Consensus 478 gtvi~vSHd~~~~~~~~d~i~~l~ 501 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTDDLYLVH 501 (638)
T ss_pred CeEEEEeCCHHHHHHhCCEEEEEE
Confidence 489999999999999999999996
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=1.1e-24 Score=189.94 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=117.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc------ccc-cccchheeehhhhccCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ------KKI-SVCSFILIRRAYFFKLP 76 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~~~-~~~~~~~l~~~~lg~lp 76 (183)
+++|++ |+|.+||+++|+||||||||||+++|+|+++|++|+|.+++ ++. ... .....+..+.+..+. .
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~-~ 412 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGL-D 412 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhc-c
Confidence 357774 46999999999999999999999999999999999999843 211 000 000111222111111 0
Q ss_pred CCccccccccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195 77 NLKSICHEALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT 146 (183)
Q Consensus 77 ~l~~l~~~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~ 146 (183)
...... ......++++.+++.. ..++++.+|||||+|+ ++.+|+.+ ||....|+..+..+..++..+
T Consensus 413 -~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 489 (552)
T TIGR03719 413 -IIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF 489 (552)
T ss_pred -ccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 000100 0123456888999964 5789999999999983 47788887 999999999999999998876
Q ss_pred CcccccCCCCCCceeeeeecccceEEEEee
Q 036195 147 TPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
. .+++|+|||++.+.+.||+++.++-
T Consensus 490 ~----~~viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 490 A----GCAVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred C----CeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3 3689999999999999999999863
No 281
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=1.6e-24 Score=188.79 Aligned_cols=165 Identities=13% Similarity=0.017 Sum_probs=114.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c----cccccccchheeehhhhccCC--
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L----QKKISVCSFILIRRAYFFKLP-- 76 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~----~~~~~~~~~~~l~~~~lg~lp-- 76 (183)
+++|+++ +|++||+++|+||||||||||+++|+|+++|++|+|.+++.. + +........+..+.+.++...
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 3578754 699999999999999999999999999999999999986421 1 000000011111111111000
Q ss_pred ----CCc------cccccc----------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------e
Q 036195 77 ----NLK------SICHEA----------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------L 118 (183)
Q Consensus 77 ----~l~------~l~~~~----------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i 118 (183)
... ...... ......++++.+++.. .+.++.+|||||+++ +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al 176 (552)
T TIGR03719 98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLL 176 (552)
T ss_pred HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHH
Confidence 000 000000 0112345667777754 588999999999983 3
Q ss_pred cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 119 IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 119 ~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.+|+.+ ||+...|+..+..+..++.... .+++++|||++.+...||+++.|+
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~----~tvIiisHd~~~~~~~~d~v~~l~ 232 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP----GTVVAVTHDRYFLDNVAGWILELD 232 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC----CeEEEEeCCHHHHHhhcCeEEEEE
Confidence 7788886 8999999999998888877542 489999999999999999999997
No 282
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-24 Score=161.21 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=109.4
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--- 80 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--- 80 (183)
++++. +|++.+||.+-|.||||||||||||+|+|+.+|++|+|.++|..++.... ........+|..+-++.
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~---~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE---SYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh---hHHHHHHHhhccccccchhh
Confidence 45565 55689999999999999999999999999999999999999987764210 00111122332222210
Q ss_pred ----------ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------cCchhhc---ccccccCccccccccc
Q 036195 81 ----------ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 81 ----------l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
+.+......+.++++.+++..+.+.|+.+||.||+|++ .+.+..| ||+.--|.+.+..|..
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~ 171 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence 11111123467889999999999999999999999854 3433334 8899999999999999
Q ss_pred ceeecCcccccCCCCCCce
Q 036195 142 KLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ 160 (183)
+|.....+ ..-|+.+||.
T Consensus 172 l~~~H~~~-GGiVllttHq 189 (209)
T COG4133 172 LMAAHAAQ-GGIVLLTTHQ 189 (209)
T ss_pred HHHHHhcC-CCEEEEecCC
Confidence 99888877 4555566664
No 283
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=6.9e-25 Score=183.03 Aligned_cols=163 Identities=14% Similarity=0.022 Sum_probs=121.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----------------ccccchheeehhhhc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----------------ISVCSFILIRRAYFF 73 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----------------~~~~~~~~l~~~~lg 73 (183)
||+|++||+.||+|+||||||||+++|.|+++|++|+|.++|+.+.-. ..+..+++.+++.++
T Consensus 24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg 103 (501)
T COG3845 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG 103 (501)
T ss_pred eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhc
Confidence 667999999999999999999999999999999999999999875421 012234555555555
Q ss_pred cCCCC-ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195 74 KLPNL-KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL 143 (183)
Q Consensus 74 ~lp~l-~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~ 143 (183)
.-+.. ..+.......++.++.+..+++--.+.++.+||-|++|+ ++..++.+ ||..---|..-+.|-..+
T Consensus 104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l 183 (501)
T COG3845 104 LEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEIL 183 (501)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 54321 111112223456788889999888899999999998883 35666664 665555554445555556
Q ss_pred eecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 144 IITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
..++.+ ..+|+.+||-|+++|+.|||+-+|
T Consensus 184 ~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVL 213 (501)
T COG3845 184 RRLAAE-GKTIIFITHKLKEVMAIADRVTVL 213 (501)
T ss_pred HHHHHC-CCEEEEEeccHHHHHHhhCeeEEE
Confidence 656666 999999999999999999999876
No 284
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=9.9e-25 Score=164.19 Aligned_cols=142 Identities=15% Similarity=0.017 Sum_probs=110.6
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
.+++|++ |++++|++++|+||||||||||||++. +++|++.+.+..... . ...+.++++
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~-------~---~~~~~~~~q----- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF-------S---RNKLIFIDQ----- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc-------c---cccEEEEhH-----
Confidence 4567875 569999999999999999999999985 479999987652110 0 001122111
Q ss_pred ccccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc--hhhc---ccccccCcccccccccceeecCccc
Q 036195 83 HEALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE--EEWW---NQLEWDDEATKHVFSSKLIITTPQT 150 (183)
Q Consensus 83 ~~~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~--~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~ 150 (183)
.++++.+++... .+.++.+||+||+|+ +..+ |+.+ ||...-|+..+..+...+..+.. .
T Consensus 68 --------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~ 138 (176)
T cd03238 68 --------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-L 138 (176)
T ss_pred --------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C
Confidence 578899999764 788999999999983 3556 7776 89999999999999999887754 5
Q ss_pred ccCCCCCCceeeeeecccceEEEEe
Q 036195 151 VISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++|+++||+++++ +.||+++.++
T Consensus 139 g~tvIivSH~~~~~-~~~d~i~~l~ 162 (176)
T cd03238 139 GNTVILIEHNLDVL-SSADWIIDFG 162 (176)
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEEC
Confidence 88999999999985 7899999884
No 285
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-24 Score=172.41 Aligned_cols=165 Identities=13% Similarity=0.021 Sum_probs=117.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++..... .... ....++++++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~ 94 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE--DVVQ-LRKQVGMVFQQ 94 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc--cHHH-hcCeEEEEECC
Confidence 357775 5689999999999999999999999999975 5 59999999986632100 0000 00112232222
Q ss_pred ccccc-----c----------cc----chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICH-----E----------AL----AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~-----~----------~~----~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++. + .. .....+.++.+++ ....+.++.+||+||+|+ +..+|+.+ |
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 174 (252)
T PRK14255 95 PNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE 174 (252)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11110 0 00 1122344566655 345678899999999983 47788876 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|....|+..+..+..++..+..+ .+++++||+++.+...||+++.++
T Consensus 175 Pt~~LD~~~~~~l~~~l~~~~~~--~tii~vsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14255 175 PTSALDPISSTQIENMLLELRDQ--YTIILVTHSMHQASRISDKTAFFL 221 (252)
T ss_pred CCccCCHHHHHHHHHHHHHHHhC--CEEEEEECCHHHHHHhCCEEEEEE
Confidence 99999999999999999887543 789999999999999999999996
No 286
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-24 Score=173.72 Aligned_cols=166 Identities=12% Similarity=-0.015 Sum_probs=118.0
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|+++ ++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++........ .......++++++..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~-~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD-PIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC-HHHHhccEEEEccCC
Confidence 678754 5899999999999999999999999999975 79999999875421000000 000001223333321
Q ss_pred ccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++.. .......++++.+++. ...+.++.+||+||+|+ ++.+|+.+ ||
T Consensus 109 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 188 (265)
T PRK14252 109 NPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188 (265)
T ss_pred cCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11110 0011234556666653 45678899999999983 36788876 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+..+..+..++..+.. .++++++||+++++...||+++.++
T Consensus 189 t~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~ 234 (265)
T PRK14252 189 TSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMY 234 (265)
T ss_pred CccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999988754 3789999999999999999999986
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-24 Score=177.21 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=118.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+ ||++.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..... ..... ...++++++.
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~--~~~~~-~~~i~~v~q~ 134 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV--NLVEL-RKRVGMVFQS 134 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--cHHHH-hhceEEEccC
Confidence 45787 45689999999999999999999999999986 689999999976532100 00000 0112222222
Q ss_pred ccccc-------------------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------
Q 036195 79 KSICH-------------------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------ 117 (183)
Q Consensus 79 ~~l~~-------------------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------ 117 (183)
..++. ......+.++++.+++. .+.+.++.+||+||+|+
T Consensus 135 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAra 214 (305)
T PRK14264 135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214 (305)
T ss_pred CccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHH
Confidence 11100 00011245567777763 45678899999999983
Q ss_pred ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEE-EEe
Q 036195 118 LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI-CID 175 (183)
Q Consensus 118 i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 175 (183)
++.+|+.+ ||....|+..+..+..++..+..+ .+++|+||+++.+...||+++ +++
T Consensus 215 L~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~--~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC--CEEEEEEcCHHHHHHhcCEEEEEec
Confidence 47788887 899999999999999999887654 689999999999999999975 444
No 288
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-24 Score=171.08 Aligned_cols=165 Identities=13% Similarity=-0.002 Sum_probs=119.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++++++ ++.+||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..... .... ....++++++.
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~-~~~~i~~~~q~ 92 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV--DVVE-LRKKVGMVFQK 92 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--cHHH-HhhheEEEecC
Confidence 3577754 589999999999999999999999999874 489999999987642100 0000 01123333332
Q ss_pred cccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195 79 KSICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N 126 (183)
Q Consensus 79 ~~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~ 126 (183)
..++.. .......++++.+++. .+.+.++.+||+||+|+ +..+|+.| |
T Consensus 93 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 172 (250)
T PRK14266 93 PNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172 (250)
T ss_pred CccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 221110 0011234556676763 35678899999999983 36788887 8
Q ss_pred cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+...|+.++..+..++..+. + ..+|+++||+++.+...+|+++.++
T Consensus 173 P~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~ 219 (250)
T PRK14266 173 PCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFL 219 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEE
Confidence 999999999999999998774 3 5799999999999999999999885
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.5e-24 Score=157.95 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=123.8
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
..++|+ ||.+.+||.++|+||+|||||||+|+++-|++|++|+++|.|+++.... +..-+..+.|..|...+|
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~-----pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLK-----PEAYRQQVSYCAQTPALF 89 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccC-----hHHHHHHHHHHHcCcccc
Confidence 457776 6679999999999999999999999999999999999999999886521 111112334444433333
Q ss_pred cc----------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhee------cCchhhc---ccccccCcccc
Q 036195 83 HE----------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 83 ~~----------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~ 136 (183)
.. +........++.++++. ....++..|||||+|+| .--|+.+ |..+-.|++.+
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 21 11223567888999975 57888999999999843 2333332 66778888888
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..++..+........++++-++||-...|+..|++|-+-
T Consensus 170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence 888887666654448899999999999999999999763
No 290
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=5.7e-24 Score=188.06 Aligned_cols=164 Identities=17% Similarity=0.035 Sum_probs=115.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-cc---cc-cccchheeehhh-------
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-QK---KI-SVCSFILIRRAY------- 71 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~---~~-~~~~~~~l~~~~------- 71 (183)
+++|++ |+|.+|+++||+||||||||||||+|+|+++|++|+|.+++... .. .. ............
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 467875 56899999999999999999999999999999999999976321 00 00 000000000000
Q ss_pred --------hcc-CC-----C-C---ccc-------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecC
Q 036195 72 --------FFK-LP-----N-L---KSI-------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIG 120 (183)
Q Consensus 72 --------lg~-lp-----~-l---~~l-------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~ 120 (183)
+.. +. . + ..+ ........+.++++.+++. .++++.+|||||+++ +..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence 000 00 0 0 000 0001123456788888886 388999999999983 377
Q ss_pred chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 121 EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 121 ~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+|+.+ ||....|+.++..+..++.... .+|+++|||.+++...||+++.|+
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tvlivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSIIFISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCHHHHHHhcCeEEEEE
Confidence 88887 8999999999999998887653 489999999999999999999997
No 291
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.89 E-value=3.3e-24 Score=187.81 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=118.7
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....++++||...++.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~-~~~~i~~v~Q~~~lf~ 430 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT----LAS-LRNQVALVSQNVHLFN 430 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC----HHH-HHhhceEEccCceeec
Confidence 4688855 58999999999999999999999999999999999999998875421 011 1134566666544443
Q ss_pred c-------------ccchHHHHHHHHcCCCCc-------cCC----CCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 E-------------ALAFPCLERIYVHGCPSL-------RKL----PFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 ~-------------~~~~~~l~vLe~l~L~~L-------~~~----~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
. ....+..++++.+++.+. .+. ....|||||+|+ +..+|..+ ||...
T Consensus 431 ~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa 510 (582)
T PRK11176 431 DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_pred chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 1 122345666666665332 122 235599999984 36677775 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|+++...+...+..... .+.++++||+++. ++.+|+||.+|
T Consensus 511 LD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~-~~~~D~Ii~l~ 552 (582)
T PRK11176 511 LDTESERAIQAALDELQK--NRTSLVIAHRLST-IEKADEILVVE 552 (582)
T ss_pred CCHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence 999998888877765532 5899999999965 67799999997
No 292
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.89 E-value=3.9e-24 Score=190.60 Aligned_cols=160 Identities=14% Similarity=0.022 Sum_probs=119.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+||||||||||+|+|+|+++|++|+|.++|.++.+.. ... -+..++++||...++.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~-lr~~i~~v~Q~~~lf~ 540 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD----VQA-VRRQLGVVLQNGRLMS 540 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC----HHH-HHhccEEEccCCccCc
Confidence 4688855 58999999999999999999999999999999999999999876421 111 1234666676655543
Q ss_pred c-----------ccchHHHHHHHHcCCCCcc-------C----CCCCCCChhhhhee------cCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSLR-------K----LPFSLESGKRNGVL------IGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L~-------~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d 132 (183)
. ....+..++++.+++.+.. + .....|||||||+| ..+|..+ |+.+..|
T Consensus 541 gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD 620 (686)
T TIGR03797 541 GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620 (686)
T ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 2 1233456677777765322 1 22356999999843 6677775 8899999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++...+...+... .+++++++|+++.+ +.+|+++.+|
T Consensus 621 ~~te~~i~~~L~~~----~~T~IiItHr~~~i-~~~D~Iivl~ 658 (686)
T TIGR03797 621 NRTQAIVSESLERL----KVTRIVIAHRLSTI-RNADRIYVLD 658 (686)
T ss_pred HHHHHHHHHHHHHh----CCeEEEEecChHHH-HcCCEEEEEE
Confidence 99988888877654 36889999999664 6699999997
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=5.9e-24 Score=186.06 Aligned_cols=162 Identities=15% Similarity=0.098 Sum_probs=123.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ +..+++++|...++.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~ 427 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS----EAAL-RQAISVVSQRVHLFS 427 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHH-HhheeEEcccchhhc
Confidence 4688855 58999999999999999999999999999999999999998776421 0111 123455555544433
Q ss_pred c------------ccchHHHHHHHHcCCCCccCC----------CCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E------------ALAFPCLERIYVHGCPSLRKL----------PFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L~~~----------~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. ....+..++++.+++.+..+. ....|||||+|+ +..+|+.+ |+....|
T Consensus 428 ~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD 507 (574)
T PRK11160 428 ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507 (574)
T ss_pred ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1 223356778888888765443 456799999984 36777776 8899999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++++..+...+..... .+.+++++|+++.+ +.+|+++.+|
T Consensus 508 ~~t~~~i~~~l~~~~~--~~tviiitHr~~~~-~~~d~i~~l~ 547 (574)
T PRK11160 508 AETERQILELLAEHAQ--NKTVLMITHRLTGL-EQFDRICVMD 547 (574)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEEecChhHH-HhCCEEEEEe
Confidence 9999999888876642 58899999999865 5699999997
No 294
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=162.41 Aligned_cols=170 Identities=14% Similarity=0.073 Sum_probs=127.3
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc---------cccc------chh--
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK---------ISVC------SFI-- 65 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~---------~~~~------~~~-- 65 (183)
.+++|++++ |++||.++|+|||||||||||++++|..+|++|.+.+.|+...+. .+.. .++
T Consensus 43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~ 122 (257)
T COG1119 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR 122 (257)
T ss_pred CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence 578999886 999999999999999999999999999999999999998754321 1111 111
Q ss_pred --eeehhhhccCCCCccccc-ccc---chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 66 --LIRRAYFFKLPNLKSICH-EAL---AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 66 --~l~~~~lg~lp~l~~l~~-~~~---~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
+++.+.-++....+ +++ ... ...+..+++.+++.++.++++.+||-||+|+ +..+|+.+ ||+++
T Consensus 123 ~~v~dvVlSg~~~siG-~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 123 ETVRDVVLSGFFASIG-IYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred cccceeeeeccccccc-ccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 12212222222222 332 211 2246778999999999999999999999983 36677775 89999
Q ss_pred cCcccccccccceeecCcc-cccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQ-TVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|...++.+..++..+... ..-+++++||..+++.++-.++.-|+
T Consensus 202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~ 247 (257)
T COG1119 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK 247 (257)
T ss_pred CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEee
Confidence 9999998888888766653 45668899999999998888877665
No 295
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=5.2e-24 Score=189.73 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=114.3
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccc------hheeehhhhccCCCC
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCS------FILIRRAYFFKLPNL 78 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~------~~~l~~~~lg~lp~l 78 (183)
++|+++ +|.+||+++|+||||||||||+|+|+|+++|++|+|.+++.. ...+.. +..........
T Consensus 523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~---~igyv~Q~~~~~l~~~~~~~~~~---- 595 (718)
T PLN03073 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV---RMAVFSQHHVDGLDLSSNPLLYM---- 595 (718)
T ss_pred eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce---eEEEEeccccccCCcchhHHHHH----
Confidence 478754 589999999999999999999999999999999999876431 000000 00000000000
Q ss_pred ccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195 79 KSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 79 ~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
...+.........++++.+++. ...++++.+|||||+|+ +..+|+++ ||....|+..+..+...+...
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-- 673 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-- 673 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 0001111123467789999997 47889999999999983 37788887 899999998888776665533
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+ .+++++|||++++...||+++.++
T Consensus 674 ~--gtvIivSHd~~~i~~~~drv~~l~ 698 (718)
T PLN03073 674 Q--GGVLMVSHDEHLISGSVDELWVVS 698 (718)
T ss_pred C--CEEEEEECCHHHHHHhCCEEEEEE
Confidence 2 489999999999999999999986
No 296
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=8.7e-24 Score=185.58 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=120.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.+.. +..-...++++||...++.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-----~~~l~~~i~~v~Q~~~lF~ 428 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-----HSVLRQGVAMVQQDPVVLA 428 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC-----HHHHHhheEEEccCCcccc
Confidence 4688855 58999999999999999999999999999999999999998876421 1111234666777665553
Q ss_pred c-----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. ..+.+..++++.+++.+.. ......|||||+|+ +..+|+.+ ||..-.|
T Consensus 429 ~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 429 DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 (592)
T ss_pred chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 2 1233556677777764321 12345699999984 36677776 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++...+...+..... .+.++++||+++. ++.+|+|+++|
T Consensus 509 ~~t~~~i~~~l~~~~~--~~tvIivtHr~~~-l~~~D~ii~l~ 548 (592)
T PRK10790 509 SGTEQAIQQALAAVRE--HTTLVVIAHRLST-IVEADTILVLH 548 (592)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence 9998888888866543 4889999999965 55699999997
No 297
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=5.7e-24 Score=188.06 Aligned_cols=159 Identities=13% Similarity=0.032 Sum_probs=116.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc---------chheeehhhhcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC---------SFILIRRAYFFK 74 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~---------~~~~l~~~~lg~ 74 (183)
+++|++ |+|.+|+++||+||||||||||+++|+|+++|++|+|.+ |.++. .++. ..+..+.+....
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~--i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLE--VAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcE--EEEEeCcccccCCCCCHHHHHHhhc
Confidence 357875 569999999999999999999999999999999999998 54321 0000 011111111110
Q ss_pred CCCCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195 75 LPNLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI 144 (183)
Q Consensus 75 lp~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~ 144 (183)
+. ...........++++.+++. ...++++.+|||||+++ +..+|+++ ||....|+..+..+..++.
T Consensus 409 -~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 484 (635)
T PRK11147 409 -QE---VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD 484 (635)
T ss_pred -cc---ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 00 00000122456778888885 56789999999999983 36778886 8999999999998888886
Q ss_pred ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 145 ITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.. ..+|+++|||++++...||+++.++
T Consensus 485 ~~----~~tvi~vSHd~~~~~~~~d~i~~l~ 511 (635)
T PRK11147 485 SY----QGTVLLVSHDRQFVDNTVTECWIFE 511 (635)
T ss_pred hC----CCeEEEEECCHHHHHHhcCEEEEEe
Confidence 54 3589999999999999999999885
No 298
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.88 E-value=9.6e-24 Score=188.74 Aligned_cols=160 Identities=12% Similarity=0.027 Sum_probs=118.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+.. ... -+..++++||...++.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~-lr~~i~~v~Q~~~lf~ 566 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP----REV-LANSVAMVDQDIFLFE 566 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC----HHH-HHhheeEEecCChhhh
Confidence 4688855 58999999999999999999999999999999999999999876421 011 1234566666554443
Q ss_pred c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++.+. .......|||||+|+ +..+|+.+ |+.+..
T Consensus 567 gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L 646 (710)
T TIGR03796 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646 (710)
T ss_pred ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence 1 123345566666665332 222345699999984 36777776 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.+...+...+.. ..++++++||.++.+ +.+|++|.+|
T Consensus 647 D~~te~~i~~~l~~----~~~T~IiitHrl~~i-~~~D~Iivl~ 685 (710)
T TIGR03796 647 DPETEKIIDDNLRR----RGCTCIIVAHRLSTI-RDCDEIIVLE 685 (710)
T ss_pred CHHHHHHHHHHHHh----cCCEEEEEecCHHHH-HhCCEEEEEe
Confidence 99998888887763 368999999999765 5699999997
No 299
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.6e-24 Score=174.16 Aligned_cols=164 Identities=14% Similarity=0.009 Sum_probs=119.6
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|+++ +|.+||++||+||||||||||+++|+|+.+ |++|+|.++|.++..... .. ......++++|+..
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~--~~-~~lr~~i~~v~q~~ 172 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI--SS-LELRTRIGMVFQKP 172 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--ch-HhhhccEEEEecCC
Confidence 578754 599999999999999999999999999986 579999999998742100 00 00011233344332
Q ss_pred ccccc--------------ccch-----HHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 80 SICHE--------------ALAF-----PCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 80 ~l~~~--------------~~~~-----~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
.++.. .... ...++++.+++. ...+.+...|||||+|+ ++.+|+.+ ||
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 22210 0001 134456666653 34578889999999983 47777776 89
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+...|+.+...+...+..+.. .++++++||+++.++..||++++++
T Consensus 253 ts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~ 298 (329)
T PRK14257 253 TSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFY 298 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999987754 3899999999999999999999996
No 300
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=1.3e-23 Score=182.92 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=118.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.... .......++++||...++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~-----~~~~~~~i~~v~q~~~lf~ 405 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD-----RETFGKHIGYLPQDVELFP 405 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC-----HHHHhhheEEecCCccccc
Confidence 4688755 58999999999999999999999999999999999999998765421 0011123455555443332
Q ss_pred c------------ccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..+ +..........|||||+|+ +..+|+.+ |+....
T Consensus 406 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~L 485 (544)
T TIGR01842 406 GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485 (544)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccc
Confidence 1 11223333344333 3334445577899999984 36677776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|++++..+...+.....+ ...++++||+++ .++.+|+++++|
T Consensus 486 D~~~~~~i~~~l~~~~~~-~~tvi~ith~~~-~~~~~d~i~~l~ 527 (544)
T TIGR01842 486 DEEGEQALANAIKALKAR-GITVVVITHRPS-LLGCVDKILVLQ 527 (544)
T ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEeCCHH-HHHhCCEEEEEE
Confidence 999999998887765433 678999999998 467899999997
No 301
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=8.5e-24 Score=160.53 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=119.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc------------------cchh
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV------------------CSFI 65 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~------------------~~~~ 65 (183)
+++|. +|+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.++.+.... ...+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 45565 667999999999999999999999999999999999999999998763110 0011
Q ss_pred eeehhhhccCC-CCccccc--ccc-chHHHHHHHH--cCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 66 LIRRAYFFKLP-NLKSICH--EAL-AFPCLERIYV--HGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 66 ~l~~~~lg~lp-~l~~l~~--~~~-~~~~l~vLe~--l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
..+++.+.... +.+.+.. +.. .....+.++. ++++++.+.++.-|||||||. ....|+.+ |...-
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 11111111110 0111111 000 0011223333 456788899999999999992 36777775 66777
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-||.+-..+-.+-..+..++-...+|++|+++-.++.-+|+|.+|
T Consensus 179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh 223 (263)
T COG1101 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH 223 (263)
T ss_pred CCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe
Confidence 788777777777777778889999999999999999999999876
No 302
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.88 E-value=7.6e-24 Score=184.46 Aligned_cols=164 Identities=15% Similarity=-0.006 Sum_probs=118.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~lf~ 410 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ----PEDY-RKLFSAVFTDFHLFD 410 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC----HHHH-hhheEEEecChhHHH
Confidence 4588755 58999999999999999999999999999999999999998775421 0111 123455555544433
Q ss_pred c--------ccchHHHHHHHHcCCCCccCCC-----CCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195 84 E--------ALAFPCLERIYVHGCPSLRKLP-----FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 84 ~--------~~~~~~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
. .......++++.+++....+.+ ...|||||+|+ +..+|+.+ |+....|++++..+..
T Consensus 411 ~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~ 490 (547)
T PRK10522 411 QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490 (547)
T ss_pred HhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 2 1122345677777776543332 35899999984 36677776 8899999988888766
Q ss_pred ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 142 KLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+........++++++||+++ +++.+|+++.+|
T Consensus 491 ~l~~~~~~~~~tvi~itH~~~-~~~~~d~i~~l~ 523 (547)
T PRK10522 491 VLLPLLQEMGKTIFAISHDDH-YFIHADRLLEMR 523 (547)
T ss_pred HHHHHHHhCCCEEEEEEechH-HHHhCCEEEEEE
Confidence 654332223678999999995 578899999997
No 303
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.88 E-value=1.4e-23 Score=187.58 Aligned_cols=160 Identities=10% Similarity=0.062 Sum_probs=116.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.. .......+++++|...++.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-----~~~lr~~i~~v~Q~~~lF~ 568 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-----HHYLHRQVALVGQEPVLFS 568 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-----HHHHHhhceEEecCccccc
Confidence 4688855 58999999999999999999999999999999999999998876421 0111124566666554443
Q ss_pred c------------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
. ..+.+..++++..++.+.. ......|||||||+| ..+|+.+ |+.+-.
T Consensus 569 gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaL 648 (711)
T TIGR00958 569 GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648 (711)
T ss_pred cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccccc
Confidence 2 1223456667776654321 222356999999843 5566665 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+++...++. .. ....++++++||+++. ++.+|+||.+|
T Consensus 649 D~~te~~i~~-~~---~~~~~TvIiItHrl~~-i~~aD~IivL~ 687 (711)
T TIGR00958 649 DAECEQLLQE-SR---SRASRTVLLIAHRLST-VERADQILVLK 687 (711)
T ss_pred CHHHHHHHHH-hh---ccCCCeEEEEeccHHH-HHhCCEEEEEE
Confidence 9988888877 11 2236899999999975 57799999997
No 304
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.88 E-value=9.6e-24 Score=183.08 Aligned_cols=161 Identities=15% Similarity=0.080 Sum_probs=119.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ... -+..+++++|...++.
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~----~~~-lr~~i~~v~Q~~~lf~ 409 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD----ADS-WRDQIAWVPQHPFLFA 409 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC----HHH-HHhheEEEcCCCcccC
Confidence 4688865 58999999999999999999999999999999999999999876421 011 1124566666554443
Q ss_pred c------------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++.+++.+.. ......|||||+|+ +..+|+.+ |+..--
T Consensus 410 ~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 410 GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 2 1123456677777664322 22346799999984 36677876 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
|+.+...+...+.... ..+.++++||+++. ++.+|+++++
T Consensus 490 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~~l 529 (529)
T TIGR02857 490 DAETEALVTEALRALA--QGRTVLLVTHRLAL-AERADRIVVL 529 (529)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEEecCHHH-HHhCCEEEeC
Confidence 9999998888887654 36899999999976 4789999875
No 305
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=1.8e-23 Score=183.42 Aligned_cols=161 Identities=11% Similarity=-0.001 Sum_probs=119.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+||||||||||+++|+|++ |++|+|.++|.++.+.. ...+ +..++++||...++.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~Q~~~LF~ 436 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD----PESW-RKHLSWVGQNPQLPH 436 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC----HHHH-HhheEEecCCCcCCC
Confidence 4688855 58999999999999999999999999999 99999999998876421 1111 135667777655553
Q ss_pred c------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++.+ ........|||||||+ +..+|+.+ |+..--
T Consensus 437 ~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 2 22334566666655532 2223345699999984 36677776 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|.++...+...+..... .+++++++|+++ +++.+|+++++|
T Consensus 517 D~~te~~i~~~l~~~~~--~~TvIiItHrl~-~i~~aD~Iivl~ 557 (588)
T PRK11174 517 DAHSEQLVMQALNAASR--RQTTLMVTHQLE-DLAQWDQIWVMQ 557 (588)
T ss_pred CHHHHHHHHHHHHHHhC--CCEEEEEecChH-HHHhCCEEEEEe
Confidence 99998888877765532 578999999995 467799999997
No 306
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=1.5e-23 Score=182.98 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=116.9
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. ....+++++|...++..
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~----~~-~~~~i~~v~q~~~lf~~ 430 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR----DD-YRDLFSAIFADFHLFDD 430 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HH-HHhhCcEEccChhhhhh
Confidence 588855 589999999999999999999999999999999999999988764210 00 01224444443333321
Q ss_pred ---------ccchHHHHHHHHcCCCCccCC-C-----CCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 85 ---------ALAFPCLERIYVHGCPSLRKL-P-----FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 85 ---------~~~~~~l~vLe~l~L~~L~~~-~-----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
....+..++++.+++.+..+. | ...|||||+|+ +..+|+.+ |+....|++++..+.
T Consensus 431 ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~ 510 (555)
T TIGR01194 431 LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY 510 (555)
T ss_pred hhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 122345677888887654332 2 25799999984 36677776 889999999988886
Q ss_pred cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.. +.... ...+.++++||+++ +++.+|+++.+|
T Consensus 511 ~~l~~~~~-~~~~tiiiisH~~~-~~~~~d~i~~l~ 544 (555)
T TIGR01194 511 EELLPDLK-RQGKTIIIISHDDQ-YFELADQIIKLA 544 (555)
T ss_pred HHHHHHHH-hCCCEEEEEeccHH-HHHhCCEEEEEE
Confidence 54 33332 23689999999997 568999999997
No 307
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.88 E-value=1.2e-23 Score=187.81 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=119.7
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ +..+++++|...++.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~----~~~l-r~~i~~v~Q~~~lf~ 552 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID----PADL-RRNIGYVPQDPRLFY 552 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHH-HhccEEECCChhhhh
Confidence 4688755 58999999999999999999999999999999999999998876421 1111 134566666554442
Q ss_pred c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++.+. .......|||||+|+ +..+|+.+ |+.+--
T Consensus 553 ~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L 632 (694)
T TIGR03375 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632 (694)
T ss_pred hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 1 223345566666655322 222335699999984 36778876 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+++...+...+..+.. .+.++++||+++. ++.+|+++++|
T Consensus 633 D~~te~~i~~~l~~~~~--~~T~iiItHrl~~-~~~~D~iivl~ 673 (694)
T TIGR03375 633 DNRSEERFKDRLKRWLA--GKTLVLVTHRTSL-LDLVDRIIVMD 673 (694)
T ss_pred CHHHHHHHHHHHHHHhC--CCEEEEEecCHHH-HHhCCEEEEEe
Confidence 99999988888765543 5889999999975 57899999997
No 308
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=1.1e-23 Score=186.34 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=121.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC--CcEEEEEecCcccc----ccc--------cchheeeh
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM--SHKFAIYAVSLQKK----ISV--------CSFILIRR 69 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~--~G~I~~~g~~~~~~----~~~--------~~~~~l~~ 69 (183)
+++|+++ ++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++... ..+ ...+..+.
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 5688865 59999999999999999999999999999885 99999999865321 000 00111111
Q ss_pred hhhccCCCCc-cccccccchHHHHHHHHcCCCCccC-----CCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 70 AYFFKLPNLK-SICHEALAFPCLERIYVHGCPSLRK-----LPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 70 ~~lg~lp~l~-~l~~~~~~~~~l~vLe~l~L~~L~~-----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+.+....... ..........+.++++.+++.+.++ ..+..|||||||+ +..+|+.+ ||....|..
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 1111000000 0000001123567888899977653 4567899999983 36778876 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (183)
++..+..++..+..+ .++|++++|+.+ .+.+.+|+++.++
T Consensus 241 ~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~ 281 (659)
T PLN03211 241 AAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLS 281 (659)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEec
Confidence 999999999888764 889999999999 4789999999986
No 309
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.88 E-value=1.5e-23 Score=183.22 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=120.2
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. .......++++||...++.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-----~~~~~~~i~~v~Q~~~lf~ 419 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-----LASLRRQVALVSQDVVLFN 419 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-----HHHHHhhceEEccCccccc
Confidence 4688855 58999999999999999999999999999999999999998765321 0111134566666554443
Q ss_pred c-------------ccchHHHHHHHHcCCCCccC-C----------CCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 E-------------ALAFPCLERIYVHGCPSLRK-L----------PFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 ~-------------~~~~~~l~vLe~l~L~~L~~-~----------~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
. ....+..++++.+++.+... . ....|||||||+ +..+|+++ ||.+.
T Consensus 420 ~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~ 499 (571)
T TIGR02203 420 DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499 (571)
T ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 2 12234566777777643221 1 234699999984 36777776 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+.+...+...+..... .+.++++||+.+. ++.||+||.+|
T Consensus 500 LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~-~~~~D~ii~l~ 541 (571)
T TIGR02203 500 LDNESERLVQAALERLMQ--GRTTLVIAHRLST-IEKADRIVVMD 541 (571)
T ss_pred CCHHHHHHHHHHHHHHhC--CCEEEEEehhhHH-HHhCCEEEEEe
Confidence 999999999888875532 4889999999965 68899999986
No 310
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.88 E-value=2.7e-23 Score=185.83 Aligned_cols=161 Identities=18% Similarity=0.095 Sum_probs=118.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ +..++++||...++.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~l-r~~i~~v~Q~~~lf~ 561 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID----RHTL-RQFINYLPQEPYIFS 561 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC----HHHH-HHheEEEecCceehh
Confidence 4688855 58999999999999999999999999999999999999998876421 1111 134566666544443
Q ss_pred c-------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195 84 E-------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEW 130 (183)
Q Consensus 84 ~-------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~ 130 (183)
. ....+..++++..++.+ ........|||||+|+| ..+|..+ |+.+.
T Consensus 562 gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 1 11234455666555532 22233456999999843 5667765 88999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|++++..+...+... + .++++++||+++ +++.+|+++.+|
T Consensus 642 LD~~te~~i~~~L~~~--~-~~T~IiitHr~~-~~~~~D~i~~l~ 682 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL--Q-DKTIIFVAHRLS-VAKQSDKIIVLD 682 (708)
T ss_pred CCHHHHHHHHHHHHHh--c-CCEEEEEecchH-HHHcCCEEEEEE
Confidence 9999999888887653 2 578899999997 567899999997
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=3.2e-23 Score=166.82 Aligned_cols=157 Identities=9% Similarity=0.038 Sum_probs=103.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc---ccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ---KKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++.+||+++|+||||||||||+++|+|+++|++|+|.++|. +. ........+..+.+.++.
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-i~yv~q~~~l~~~tv~enl~~~~------ 122 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSSQFSWIMPGTIKENIIFGV------ 122 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EEEEeCcccccccCHHHHhhccc------
Confidence 457775 569999999999999999999999999999999999998773 11 000000001111111100
Q ss_pred ccccccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 81 ICHEALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
........++++.+++.. ..+.++.+||+||+|+ +..+|+.+ ||+...|+..+..+.
T Consensus 123 ---~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 123 ---SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred ---ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 000111122333333321 2234567999999983 36677776 899999999988887
Q ss_pred cce-eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SKL-IITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+ ..+. + ..+|+++||+++.+ +.||+++.++
T Consensus 200 ~~ll~~~~-~-~~tIiiisH~~~~~-~~~d~i~~l~ 232 (282)
T cd03291 200 ESCVCKLM-A-NKTRILVTSKMEHL-KKADKILILH 232 (282)
T ss_pred HHHHHHhh-C-CCEEEEEeCChHHH-HhCCEEEEEE
Confidence 643 3333 2 47899999999986 6899999985
No 312
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.8e-24 Score=156.47 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=103.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++++ ++++++|++++|+||||||||||+++|+|+++|++|+|+++|.++.... .......+++.++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-----~~~~~~~i~~~~q------- 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-----LEELRRRIGYVPQ------- 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-----HHHHHhceEEEee-------
Confidence 4565 5568999999999999999999999999999999999999997654210 0000011222221
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
||+||+|+ ++.+|+.+ ||....|...+..+...+.....+ ...++
T Consensus 81 -------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii 134 (157)
T cd00267 81 -------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVI 134 (157)
T ss_pred -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence 99999883 36677776 889999999999999999877665 67899
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++||+++.+...||+++.++
T Consensus 135 ~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 135 IVTHDPELAELAADRVIVLK 154 (157)
T ss_pred EEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999885
No 313
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.7e-23 Score=154.03 Aligned_cols=163 Identities=16% Similarity=0.060 Sum_probs=115.0
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccC-------CC
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKL-------PN 77 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~l-------p~ 77 (183)
+||++ |.|++||.++|+||+||||||||-+++|+..|++|+|++.|+++.+..... ...++...++++ |.
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~-rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA-RAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHH-HHHhhccceeEEEEeeecccc
Confidence 56764 559999999999999999999999999999999999999999876531100 000111111111 11
Q ss_pred Ccccc--------cc---cc-chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 78 LKSIC--------HE---AL-AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 78 l~~l~--------~~---~~-~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
+..+. +. .. .......++.+|+.....-++.+|||||+|+ ++..|+.+ ||..--|.++-
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 11000 00 00 1124667889999998889999999998883 36777776 77777787777
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccce
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYE 170 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (183)
..+..++-.+.-+...+..+++||....-|+.-+
T Consensus 183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 183 DKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 7777777777777789999999998776665433
No 314
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.5e-24 Score=160.35 Aligned_cols=165 Identities=15% Similarity=0.018 Sum_probs=114.9
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-----cEEEEEecCcccccc---------------cc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-----HKFAIYAVSLQKKIS---------------VC 62 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-----G~I~~~g~~~~~~~~---------------~~ 62 (183)
.+.+|+++ +|.+++++|+|||||||||||||+++.+....+ |+|.++|+++-.... ..
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 34567754 589999999999999999999999999988765 999999998765310 01
Q ss_pred chheeehhhhccCCCCccccccccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 63 SFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 63 ~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
+||..-+-.+.|-+++..+........+.+.+....+ .+..+.+...|||||+|+ |+-+|+-+ ||.+
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS 178 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence 1111111111111111111111111123334444444 245667778899999883 58889886 8899
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL 171 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
-.||.+-..++.++..++. .-+|.|++||+.-+.|.||+.
T Consensus 179 ALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 179 ALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred ccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhh
Confidence 9999999999999999984 478999999999999999976
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=3.2e-23 Score=183.57 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=125.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... .........+++.++...++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD-ALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHH-HHHHHHhccEEEEeCCcccCC
Confidence 357875 45899999999999999999999999999999999999999876431000 000000112233333222221
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+++....+.++.+||+||+|+ +..+|+.+ ||....|+.+
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 1 011235677888999999999999999999983 47788887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++||+++.+ ..||+++.++
T Consensus 180 ~~~l~~ll~~l~~~-g~tilivsH~~~~~-~~~d~i~~l~ 217 (648)
T PRK10535 180 GEEVMAILHQLRDR-GHTVIIVTHDPQVA-AQAERVIEIR 217 (648)
T ss_pred HHHHHHHHHHHHhc-CCEEEEECCCHHHH-HhCCEEEEEE
Confidence 99999999887644 78999999999976 5699999986
No 316
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=4.7e-23 Score=180.78 Aligned_cols=162 Identities=12% Similarity=0.062 Sum_probs=116.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++++++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++.
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~lf~ 422 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT----RESL-RKSIATVFQDAGLFN 422 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC----HHHH-HhheEEEccCCccCc
Confidence 3578755 58999999999999999999999999999999999999998765321 0001 123445555443332
Q ss_pred c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++ ..........|||||+|+ +..+|+++ |+....
T Consensus 423 ~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L 502 (585)
T TIGR01192 423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502 (585)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 1 112223334443333 223345567899999984 36788886 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|++++..+...+..... .+.++++||+++.+ +.+|+++.+|
T Consensus 503 D~~~~~~i~~~l~~~~~--~~tvI~isH~~~~~-~~~d~i~~l~ 543 (585)
T TIGR01192 503 DVETEARVKNAIDALRK--NRTTFIIAHRLSTV-RNADLVLFLD 543 (585)
T ss_pred CHHHHHHHHHHHHHHhC--CCEEEEEEcChHHH-HcCCEEEEEE
Confidence 99999999888876532 68899999999776 6799999996
No 317
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=6.6e-23 Score=179.32 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=116.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... ... ....+++++|...++.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ----LDS-WRSRLAVVSQTPFLFS 402 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC----HHH-HHhheEEEccCCeecc
Confidence 4578755 58999999999999999999999999999999999999998765321 000 0123444454433332
Q ss_pred ------------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 ------------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
+....+..++++.+++.+ ........|||||+|+ +..+|+.| |+...-
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 112223455555555432 2233456799999984 36777876 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+.... ..+.++++||+++. ++.+|+++.+|
T Consensus 483 D~~~~~~i~~~l~~~~--~~~tii~itH~~~~-~~~~d~i~~l~ 523 (569)
T PRK10789 483 DGRTEHQILHNLRQWG--EGRTVIISAHRLSA-LTEASEILVMQ 523 (569)
T ss_pred CHHHHHHHHHHHHHHh--CCCEEEEEecchhH-HHcCCEEEEEe
Confidence 9999998888887653 26789999999965 57799999996
No 318
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.9e-23 Score=154.98 Aligned_cols=168 Identities=12% Similarity=0.046 Sum_probs=127.9
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc-cchheeehhhhccC-CCCcccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV-CSFILIRRAYFFKL-PNLKSIC 82 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~-~~~~~l~~~~lg~l-p~l~~l~ 82 (183)
.||+ ||+...|++++|||.+||||||+||+|+-|.+|+.|.|.++|+.+.-.... ..........+.++ .++.++|
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 4666 455789999999999999999999999999999999999999876532110 00000111111111 2344566
Q ss_pred ccccchHH--------------------------HHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195 83 HEALAFPC--------------------------LERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ 127 (183)
Q Consensus 83 ~~~~~~~~--------------------------l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~ 127 (183)
|++..|.. +..+..+|+.+.++.++..|||||+|+ ++++|+-. ||
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP 179 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP 179 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence 65555433 334667788899999999999999882 47888875 88
Q ss_pred ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+-.||+..-.....+..+..+ .++...++|.+.+....+..|+-+-
T Consensus 180 TSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh 226 (256)
T COG4598 180 TSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLH 226 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEee
Confidence 8999999999899899888887 9999999999999999999999874
No 319
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=8.3e-23 Score=181.20 Aligned_cols=161 Identities=11% Similarity=-0.008 Sum_probs=114.0
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-----cccccccchheeehhhhccCCCCc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-----QKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.+++... ++. .....+..+.+..+.. ..
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~-~l~~~tv~eni~~~~~--~~ 542 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRP-YMTLGTLRDQIIYPDS--SE 542 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCC-CCCCcCHHHHHhcCCC--hh
Confidence 578755 5899999999999999999999999999999999998864210 000 0000011111111100 00
Q ss_pred cc-cccccchHHHHHHHHcCCCCccCCCC---------CCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 80 SI-CHEALAFPCLERIYVHGCPSLRKLPF---------SLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 80 ~l-~~~~~~~~~l~vLe~l~L~~L~~~~~---------~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
.. .......+..++++.+++.++.+++. ..|||||+|+ +..+|+++ ||....|+..+..++
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~ 622 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 00 01112335677888899887666654 7899999983 37788887 899999999998888
Q ss_pred cceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+.. ..++++++||+++. .+.+|+++.+|
T Consensus 623 ~~l~~----~~~tvI~isH~~~~-~~~~d~il~l~ 652 (659)
T TIGR00954 623 RLCRE----FGITLFSVSHRKSL-WKYHEYLLYMD 652 (659)
T ss_pred HHHHH----cCCEEEEEeCchHH-HHhCCEEEEEe
Confidence 77653 26889999999987 58899999997
No 320
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.87 E-value=8.6e-23 Score=178.66 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=119.2
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ... -...++++||...++.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~----~~~-~~~~i~~~~Q~~~lf~ 427 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD----PAE-LRARMALVPQDPVLFA 427 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC----HHH-HHHhceEEccCCcccc
Confidence 4588855 58999999999999999999999999999999999999998775421 011 1134666677654443
Q ss_pred c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++.+++.+. .......|||||+|+ +..+|+++ ||.+-.
T Consensus 428 ~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l 507 (576)
T TIGR02204 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507 (576)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc
Confidence 2 112345566666665321 122345699999984 36677776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+..... .+.++++||+++. ++.+|+|+.+|
T Consensus 508 D~~~~~~i~~~l~~~~~--~~t~IiitH~~~~-~~~~d~vi~l~ 548 (576)
T TIGR02204 508 DAESEQLVQQALETLMK--GRTTLIIAHRLAT-VLKADRIVVMD 548 (576)
T ss_pred CHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence 99998888887776532 5899999999966 57799999886
No 321
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.86 E-value=6.6e-23 Score=181.58 Aligned_cols=161 Identities=18% Similarity=0.127 Sum_probs=119.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+..-. ...-+..+++++|...++..
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~-----~~~lR~~ig~V~Q~~~Lf~g 561 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID-----LASLRRQVGYVLQDPFLFSG 561 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC-----HHHHHhheeEEcccchhhcC
Confidence 57775 569999999999999999999999999999999999999999886521 11112457777776655532
Q ss_pred ------------ccchHHHHHHHHcCCCC-------ccC----CCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 ------------ALAFPCLERIYVHGCPS-------LRK----LPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 ------------~~~~~~l~vLe~l~L~~-------L~~----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
....+..+++...++.+ -.+ .....|||||||+ +..+|..+ |+.+--|
T Consensus 562 SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD 641 (709)
T COG2274 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD 641 (709)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccC
Confidence 11234555555554422 222 2334599999994 36677764 7799999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++++..+...+...... +++++++|.+. +++.+||+|++|
T Consensus 642 ~~sE~~I~~~L~~~~~~--~T~I~IaHRl~-ti~~adrIiVl~ 681 (709)
T COG2274 642 PETEAIILQNLLQILQG--RTVIIIAHRLS-TIRSADRIIVLD 681 (709)
T ss_pred HhHHHHHHHHHHHHhcC--CeEEEEEccch-HhhhccEEEEcc
Confidence 99988888877765544 88999999986 578899999998
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.86 E-value=3.2e-23 Score=169.77 Aligned_cols=167 Identities=16% Similarity=0.014 Sum_probs=125.5
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-- 82 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-- 82 (183)
.+++ ||++.+||.+||+|+||||||||-++|.+|++++ |+|.|.|+++.........|....+.+-+..-.+++.
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 4455 5568999999999999999999999999999766 9999999987642111001111111111100011111
Q ss_pred -------------------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCc
Q 036195 83 -------------------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 -------------------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~ 133 (183)
.......+.++++.+|++ .-++++++++||||+|+| .-+|+++ ||.+--|.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 111233578889999996 468899999999999954 4567775 88999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
..+..+..++..++..+..+-+.+||||..|.+.|++||+.
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence 99999999999999999999999999999999999999986
No 323
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1.3e-22 Score=181.04 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=118.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ...+ +..+++++|...++.
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~----~~~~-r~~i~~v~q~~~lf~ 544 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD----PAWL-RRQMGVVLQENVLFS 544 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC----HHHH-HHhCeEEccCCeehh
Confidence 3578755 58999999999999999999999999999999999999999876421 0111 123555565543332
Q ss_pred c------------ccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++. .........|||||+|+ +..+|..+ |+.+..
T Consensus 545 ~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 1 1123345555555543 22333456799999984 36677776 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+.... ..++++++||+++.+ +.+|+++.+|
T Consensus 625 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~ii~l~ 665 (694)
T TIGR01846 625 DYESEALIMRNMREIC--RGRTVIIIAHRLSTV-RACDRIIVLE 665 (694)
T ss_pred CHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH-HhCCEEEEEe
Confidence 9999999988887663 357899999999765 5699999997
No 324
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=1.5e-22 Score=176.96 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=117.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.+||+|||||||||++++|+|++.|++|+|.++|.++.... ... -+..+++++|...+|.
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~----~~~-lr~~I~~V~Qd~~LF~ 416 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS----LDS-LRKRIGIVSQDPLLFS 416 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcC----HHH-HHHhccEEcccceeec
Confidence 4788855 58999999999999999999999999999999999999998887531 111 1134556666554443
Q ss_pred c------------ccchHHHHHHHHcCC-------CCccCCC----CCCCChhhhhee------cCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGC-------PSLRKLP----FSLESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L-------~~L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++ ++-.+.. ...|||||||+| ..+|+.+ |+.+.-
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 1 122345555555433 2222333 346999999943 5666664 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|.++...++.-+..+. + .+++++++|.+..+.. +|+++++|
T Consensus 497 D~~tE~~I~~~l~~l~-~-~rT~iiIaHRlsti~~-aD~IiVl~ 537 (567)
T COG1132 497 DTETEALIQDALKKLL-K-GRTTLIIAHRLSTIKN-ADRIIVLD 537 (567)
T ss_pred CHHhHHHHHHHHHHHh-c-CCEEEEEeccHhHHHh-CCEEEEEE
Confidence 9999999988887544 2 3688999999965555 99999997
No 325
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=1.2e-22 Score=178.29 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=117.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ... ....++++||...++.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~----~~~-~r~~i~~v~Q~~~lf~ 422 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT----RAS-LRRNIAVVFQDAGLFN 422 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC----HHH-HHhheEEEecCccccc
Confidence 4588866 48999999999999999999999999999999999999998776421 011 1134566666554443
Q ss_pred c------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
. ..+.+..++++.+++.+ ........|||||+|+| ..+|..+ |+....
T Consensus 423 ~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~L 502 (588)
T PRK13657 423 RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL 502 (588)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 2 11233455556555432 12223346999999843 5666665 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+++...+...+..... .+.++++||+.+. ++.+|++|.+|
T Consensus 503 D~~t~~~i~~~l~~~~~--~~tvIiitHr~~~-~~~~D~ii~l~ 543 (588)
T PRK13657 503 DVETEAKVKAALDELMK--GRTTFIIAHRLST-VRNADRILVFD 543 (588)
T ss_pred CHHHHHHHHHHHHHHhc--CCEEEEEEecHHH-HHhCCEEEEEE
Confidence 99999988887765532 5889999999975 57899999996
No 326
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-22 Score=171.88 Aligned_cols=161 Identities=15% Similarity=0.124 Sum_probs=121.8
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+++.++ ++++|+.++|+|+||||||||+++|+|+.+|++|+|.++|.+.++.. +..-+..+.+++|...++..
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~-----~~~~~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS-----PEAWRKQISWVSQNPYLFAG 409 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC-----HHHHHhHeeeeCCCCccccc
Confidence 677755 59999999999999999999999999999999999999998876531 11112346666776666542
Q ss_pred ------------ccchHHHHHHHHcCCCCccCC------CCCC----CChhhhhee------cCchhhc---ccccccCc
Q 036195 85 ------------ALAFPCLERIYVHGCPSLRKL------PFSL----ESGKRNGVL------IGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 ------------~~~~~~l~vLe~l~L~~L~~~------~~~~----LSgGqk~~i------~~~~~w~---~~l~~~d~ 133 (183)
..+.+..++++..++.++.+. .+.+ |||||+|++ ..+++.+ ||..--|.
T Consensus 410 TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~ 489 (559)
T COG4988 410 TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489 (559)
T ss_pred cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCH
Confidence 223456777887777554443 2333 999999855 3444444 88899998
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++...+...+..+.++ ..++|+||.++. ++.+|+|+.+|
T Consensus 490 etE~~i~~~l~~l~~~--ktvl~itHrl~~-~~~~D~I~vld 528 (559)
T COG4988 490 ETEQIILQALQELAKQ--KTVLVITHRLED-AADADRIVVLD 528 (559)
T ss_pred hHHHHHHHHHHHHHhC--CeEEEEEcChHH-HhcCCEEEEec
Confidence 8888888887777766 889999999975 57899999999
No 327
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=1.3e-22 Score=150.90 Aligned_cols=166 Identities=13% Similarity=0.043 Sum_probs=122.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---------cccchhe--e-ehhhhccCCC-
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---------SVCSFIL--I-RRAYFFKLPN- 77 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---------~~~~~~~--l-~~~~lg~lp~- 77 (183)
||++++|+.+||||.||||||||.|+|+|++.|++|+|.|+|+.+.-.. ..+.-|+ + .++.+|....
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~ 112 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDF 112 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcc
Confidence 7889999999999999999999999999999999999999998654210 0000000 0 0011111100
Q ss_pred ----CccccccccchHHHHHHHHcCC-CCccCCCCCCCChhhhheec------Cchhhc---ccccccCcccccccccce
Q 036195 78 ----LKSICHEALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGVLI------GEEEWW---NQLEWDDEATKHVFSSKL 143 (183)
Q Consensus 78 ----l~~l~~~~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~i~------~~~~w~---~~l~~~d~~~~~~~~~~~ 143 (183)
...+.......++.+.+..+|+ ++-++.++..||.||||+++ -+|+.+ |.+...|...+..+..++
T Consensus 113 PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 113 PLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred hhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 0011111112345677888887 67889999999999999542 344443 779999999999999999
Q ss_pred eecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 144 IITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
-.++.+..++-.-+++++-++--++|+||+.|=
T Consensus 193 LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~E 225 (267)
T COG4167 193 LELQEKQGISYIYVTQHIGMIKHISDQVLVMHE 225 (267)
T ss_pred HHHHHHhCceEEEEechhhHhhhhcccEEEEec
Confidence 999999999999999999999999999999874
No 328
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=1.4e-22 Score=191.62 Aligned_cols=169 Identities=11% Similarity=0.020 Sum_probs=117.3
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE-ecCccccc--------cc-------cchheee
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY-AVSLQKKI--------SV-------CSFILIR 68 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~~~~~~--------~~-------~~~~~l~ 68 (183)
++|+++ ++++||++||+||||||||||+++|+|+++|++|+|.++ |.++.... ++ +..+..+
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 688855 589999999999999999999999999999999999995 56553210 00 0111122
Q ss_pred hhhhccCCCCc-------------------------------------------ccc------ccccchHHHHHHHHcCC
Q 036195 69 RAYFFKLPNLK-------------------------------------------SIC------HEALAFPCLERIYVHGC 99 (183)
Q Consensus 69 ~~~lg~lp~l~-------------------------------------------~l~------~~~~~~~~l~vLe~l~L 99 (183)
.+.++...... .+. .......+.++++.+++
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 22222100000 000 00112345556666665
Q ss_pred CCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195 100 PSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY 159 (183)
Q Consensus 100 ~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
.+. .......|||||||+ +..+|+.+ |+..-.|+.++..++..+..+..+..+++++++|
T Consensus 559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsH 638 (1466)
T PTZ00265 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638 (1466)
T ss_pred HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 432 345677899999984 36777776 8999999999999999998876544789999999
Q ss_pred eeeeeecccceEEEEee
Q 036195 160 TYEATIRPRYELICIDV 176 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (183)
+++.+ +.||++++++=
T Consensus 639 rls~i-~~aD~Iivl~~ 654 (1466)
T PTZ00265 639 RLSTI-RYANTIFVLSN 654 (1466)
T ss_pred CHHHH-HhCCEEEEEeC
Confidence 99865 79999999974
No 329
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=4.6e-23 Score=152.31 Aligned_cols=157 Identities=17% Similarity=0.044 Sum_probs=113.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCC------------C
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN------------L 78 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~------------l 78 (183)
|.++..||++-+|||||||||||+-.++|+. |-+|+|.|.|.++...... .+. ..-.|+.+ .
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~----eLA-rhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT----ELA-RHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHh----HHH-HHHHHHhhccCCcchhhhhhh
Confidence 4468999999999999999999999999997 7899999999987642110 000 00011111 0
Q ss_pred ccccccc--cchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee-------------cCchhhc-ccccccCcccccccc
Q 036195 79 KSICHEA--LAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL-------------IGEEEWW-NQLEWDDEATKHVFS 140 (183)
Q Consensus 79 ~~l~~~~--~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i-------------~~~~~w~-~~l~~~d~~~~~~~~ 140 (183)
-.+++.. ......++-..+++.+...+.++.|||||-| ++ .++--.| ||...-|.+.+..++
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 0111111 1123455667788889899999999999876 32 2233335 667777888888888
Q ss_pred cceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.++..+-.+ .++|.|.+||++-|++-+|+|+.+
T Consensus 173 rll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL 205 (248)
T COG4138 173 RLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLL 205 (248)
T ss_pred HHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHH
Confidence 888888777 999999999999999999998754
No 330
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-22 Score=169.11 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=117.6
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
..++|++| ++++||.+||+|++|||||||+.+++|.++|++|+|.++|.++..... ..-...+..++|...+|
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-----~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-----QALRETISVLTQRVHLF 424 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-----hhHHHHHhhhccchHHH
Confidence 45788855 589999999999999999999999999999999999999987764210 00011233333333232
Q ss_pred ------------ccccchHHHHHHHHcCCCCccCCC-----------CCCCChhhhhee-------cCchhhc--ccccc
Q 036195 83 ------------HEALAFPCLERIYVHGCPSLRKLP-----------FSLESGKRNGVL-------IGEEEWW--NQLEW 130 (183)
Q Consensus 83 ------------~~~~~~~~l~vLe~l~L~~L~~~~-----------~~~LSgGqk~~i-------~~~~~w~--~~l~~ 130 (183)
++..+.+.-++++.+++.++.... -..|||||+|++ ...|-|+ ||.|.
T Consensus 425 ~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg 504 (573)
T COG4987 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 (573)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence 234456677888999887654333 356999999842 4445554 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
-|+.+...+..++..... ..+++|++|++..+ ..+||+|.+|=
T Consensus 505 LD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~l-e~~drIivl~~ 547 (573)
T COG4987 505 LDPITERQVLALLFEHAE--GKTLLMVTHRLRGL-ERMDRIIVLDN 547 (573)
T ss_pred CChhhHHHHHHHHHHHhc--CCeEEEEecccccH-hhcCEEEEEEC
Confidence 999777766655443332 56899999999875 67899999983
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=4e-22 Score=172.98 Aligned_cols=148 Identities=15% Similarity=0.093 Sum_probs=109.2
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...-+..++++||...++.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~------~~~lr~~i~~V~Q~~~lF~ 421 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL------QDELRRRISVFAQDAHLFD 421 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH------HHHHHhheEEEccCccccc
Confidence 3588855 5899999999999999999999999999999999999999887641 1111234677777665553
Q ss_pred c------------ccchHHHHHHHHcCCCCcc-------CC----CCCCCChhhhhee------cCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSLR-------KL----PFSLESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L~-------~~----~~~~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
. ..+.+..++++.+++.+.. +. ....|||||||+| ..+|+.+ |+.+--
T Consensus 422 ~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 422 TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 2234566777777764322 22 2345999999843 6677765 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCcee
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTY 161 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
|+++...++..+.... ..+++++++|++
T Consensus 502 D~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 502 DAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 9999988888877543 357899999974
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.3e-22 Score=166.29 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=120.5
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+++||+ ||+|++||.+||+|+|||||||++|+|.+++. ++|+|.++|++++.-. ...-+..++++||...+|
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~-----~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS-----LESLRQSIGVVPQDSVLF 437 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC-----hHHhhhheeEeCCccccc
Confidence 567998 55799999999999999999999999999999 9999999999987521 111224688899987776
Q ss_pred ccc------------cchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee-------cCchhhc--ccccc
Q 036195 83 HEA------------LAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL-------IGEEEWW--NQLEW 130 (183)
Q Consensus 83 ~~~------------~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i-------~~~~~w~--~~l~~ 130 (183)
.+. ...++.++.+..++.+ +.......|||||||++ ...|-.. |+.+-
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~ 517 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSA 517 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence 542 2345666666666633 23344557999999944 3333333 66777
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|-++...+-..+.. .-..++++|+-||+..+ ..+|+++.+|
T Consensus 518 LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll-~~~DkI~~l~ 559 (591)
T KOG0057|consen 518 LDSETEREILDMIMD--VMSGRTVIMIVHRLDLL-KDFDKIIVLD 559 (591)
T ss_pred cchhhHHHHHHHHHH--hcCCCeEEEEEecchhH-hcCCEEEEEE
Confidence 787777777777766 34478899999998765 5689999998
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=1.7e-21 Score=184.40 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=122.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC----------------------------------------
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---------------------------------------- 43 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---------------------------------------- 43 (183)
++||+++ ++++|+++||+||||||||||+++|.|++.|
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 3689855 5899999999999999999999999999998
Q ss_pred --------------CCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------------ccchHHHHHHHHc
Q 036195 44 --------------MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------------ALAFPCLERIYVH 97 (183)
Q Consensus 44 --------------~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------------~~~~~~l~vLe~l 97 (183)
++|+|.++|.++.+.. ...+ +..+++++|...+|.. ....++.++++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~----~~~l-R~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A 1335 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYN----LKDL-RNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCC----HHHH-HhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 6999999999886531 1111 2356777776655532 2233456666666
Q ss_pred CCCC-------ccC----CCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 98 GCPS-------LRK----LPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 98 ~L~~-------L~~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
++.+ -.+ .....|||||||+| ..+|..+ |+.+-.|.++...++..+........++++++
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 5532 222 23456999999943 6677776 88999999988888888776642236899999
Q ss_pred CceeeeeecccceEEEEee
Q 036195 158 SYTYEATIRPRYELICIDV 176 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (183)
+|.+ .+++.+|+++++|=
T Consensus 1416 aHRl-sti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1416 AHRI-ASIKRSDKIVVFNN 1433 (1466)
T ss_pred echH-HHHHhCCEEEEEeC
Confidence 9999 55788999999973
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.3e-21 Score=186.05 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=120.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|+++ +|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+.. ...+ +..++++||...+|.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~----~~~l-R~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG----LTDL-RRVLSIIPQSPVLFS 1323 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC----HHHH-HhhcEEECCCCeeeC
Confidence 3689865 58999999999999999999999999999999999999999876421 1111 134666777655553
Q ss_pred c-----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. ..+.+..++++.+++.+.. ......|||||||+ +..+|+.+ |+..-.|
T Consensus 1324 gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD 1403 (1495)
T PLN03232 1324 GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403 (1495)
T ss_pred ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 2 1233566677777664321 22235699999984 35566665 7788899
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++...++..+.... + .+++++++|.++.++. +|+|+++|
T Consensus 1404 ~~Te~~Iq~~L~~~~-~-~~TvI~IAHRl~ti~~-~DrIlVL~ 1443 (1495)
T PLN03232 1404 VRTDSLIQRTIREEF-K-SCTMLVIAHRLNTIID-CDKILVLS 1443 (1495)
T ss_pred HHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEE
Confidence 988888888776543 2 5899999999977665 99999997
No 335
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=9.1e-22 Score=185.81 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=122.5
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++++ +++||++||+|||||||||||++|+|+.+ |++|+|.++|+++... + ...+++++|...
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-----~----~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-----F----QRSIGYVQQQDL 846 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-----h----hcceeeeccccc
Confidence 46888665 89999999999999999999999999997 7899999999876321 0 011222222110
Q ss_pred c----------------------cccccchHHHHHHHHcCCCCccCCCCC----CCChhhhhe------ecCchh-hc--
Q 036195 81 I----------------------CHEALAFPCLERIYVHGCPSLRKLPFS----LESGKRNGV------LIGEEE-WW-- 125 (183)
Q Consensus 81 l----------------------~~~~~~~~~l~vLe~l~L~~L~~~~~~----~LSgGqk~~------i~~~~~-w~-- 125 (183)
. ........+.++++.+++.+.++..+. .|||||||+ +..+|+ .+
T Consensus 847 ~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlL 926 (1394)
T TIGR00956 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFL 926 (1394)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEE
Confidence 0 000011235678999999988888887 799999983 477886 44
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeee-ecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEAT-IRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (183)
||....|..+...+...+..+..+ .++|++++|+++.. .+.+|+++.++
T Consensus 927 DEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~ 977 (1394)
T TIGR00956 927 DEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQ 977 (1394)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEc
Confidence 899999999999999999888654 78999999999975 47899999986
No 336
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=1.6e-21 Score=185.97 Aligned_cols=161 Identities=13% Similarity=0.098 Sum_probs=120.4
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+||+++ +|++||.+||+|++|||||||+++|.|++.|++|+|.++|.++.+. ....++ ..++++||...+|..
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i----~l~~LR-~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF----GLMDLR-KVLGIIPQAPVLFSG 1327 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----CHHHHH-hccEEECCCCccccc
Confidence 689855 5899999999999999999999999999999999999999988652 111121 346667776655432
Q ss_pred -----------ccchHHHHHHHHcCCCCc-------cC----CCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 85 -----------ALAFPCLERIYVHGCPSL-------RK----LPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L-------~~----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
..+.+..++++.+++.+. .+ .....|||||||+ +..+|..+ |+..-.|.
T Consensus 1328 TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130 1328 TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 123345667777666322 12 2234699999984 35566665 77888999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++...++..+.... + .+++++++|.++.++. ||+|+++|
T Consensus 1408 ~Te~~Iq~~I~~~~-~-~~TvI~IAHRL~tI~~-~DrIlVLd 1446 (1622)
T PLN03130 1408 RTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILVLD 1446 (1622)
T ss_pred HHHHHHHHHHHHHC-C-CCEEEEEeCChHHHHh-CCEEEEEE
Confidence 99888888877553 2 5899999999998765 89999998
No 337
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=1.7e-21 Score=183.98 Aligned_cols=171 Identities=15% Similarity=0.054 Sum_probs=121.7
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEEEecCccccc-------cc--------cc
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMF----SDMSHKFAIYAVSLQKKI-------SV--------CS 63 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~~~~~-------~~--------~~ 63 (183)
.+++|++++ +++||+++|+||||||||||||+|+|+. +|++|+|.++|.++.+.. .+ ..
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356888665 8999999999999999999999999996 579999999998764210 00 00
Q ss_pred hheeehhhhcc---CCCCc--cccccccchH-HHHHHHHcCCCCccCCC-----CCCCChhhhhe------ecCchhhc-
Q 036195 64 FILIRRAYFFK---LPNLK--SICHEALAFP-CLERIYVHGCPSLRKLP-----FSLESGKRNGV------LIGEEEWW- 125 (183)
Q Consensus 64 ~~~l~~~~lg~---lp~l~--~l~~~~~~~~-~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~------i~~~~~w~- 125 (183)
.++.+.+.+.. .|... .......... ...+++.+++.+.++.+ +..|||||||+ +..+|+.+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 11111111110 01000 0000000011 24578889998877655 46799999984 36777775
Q ss_pred --ccccccCcccccccccceeecCcccccCCCCCCcee-eeeecccceEEEEe
Q 036195 126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTY-EATIRPRYELICID 175 (183)
Q Consensus 126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 175 (183)
||....|..+...+...+..+..+...++++++|+. ..+.+.+|+|+.|+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~ 285 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY 285 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence 889999999999999999988776688999999996 67889999999996
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.83 E-value=1.4e-21 Score=172.35 Aligned_cols=162 Identities=13% Similarity=0.018 Sum_probs=124.0
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
.+++|++++ +++||+++|+|||||||||||++|+|..+|. +|+|.++|.++.... ....+++++|..
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~--------~~~~i~yv~Q~~ 108 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE--------MRAISAYVQQDD 108 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHH--------Hhhhceeecccc
Confidence 467898665 9999999999999999999999999999885 899999998754210 001122322221
Q ss_pred cccc----------------------cccchHHHHHHHHcCCCCccCCCCC------CCChhhhhe------ecCchhhc
Q 036195 80 SICH----------------------EALAFPCLERIYVHGCPSLRKLPFS------LESGKRNGV------LIGEEEWW 125 (183)
Q Consensus 80 ~l~~----------------------~~~~~~~l~vLe~l~L~~L~~~~~~------~LSgGqk~~------i~~~~~w~ 125 (183)
.++. ......+.++++.+++.+.++.++. .|||||||+ +..+|+.+
T Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 109 LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred ccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 1111 1112246788999999888888876 499999984 36777775
Q ss_pred ---ccccccCcccccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID 175 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 175 (183)
||....|..+...+...+..+..+ .+++++++|+.. .+...+|+++.++
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~ 241 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMA 241 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEee
Confidence 889999999999999998887654 889999999996 6789999999986
No 339
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.83 E-value=1.1e-21 Score=178.67 Aligned_cols=162 Identities=16% Similarity=0.085 Sum_probs=130.1
Q ss_pred cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
++++ +.|++|||+|++|||||||||++++|+|..+|++|++++.|.++..... .......+||-||.-.+.+..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~----~~~~~~~iGyCPQ~d~l~~~l 655 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD----FQQVRKQLGYCPQFDALWEEL 655 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc----hhhhhhhcccCCchhhhhhhc
Confidence 5664 4599999999999999999999999999999999999999988764311 001223466666654333321
Q ss_pred c-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 86 L-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 86 ~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
. ...+...++.+++.+.++.++..+|||+||+ +.+.|..+ ||..+.||.+|.
T Consensus 656 T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr 735 (885)
T KOG0059|consen 656 TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR 735 (885)
T ss_pred cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 1 1235677888999999999999999999983 48888886 889999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.+-..+...+.+.- +++.|||.+++.-+.|+|+-..
T Consensus 736 ~lW~ii~~~~k~g~-aiiLTSHsMeE~EaLCtR~aIm 771 (885)
T KOG0059|consen 736 HLWDIIARLRKNGK-AIILTSHSMEEAEALCTRTAIM 771 (885)
T ss_pred HHHHHHHHHHhcCC-EEEEEcCCHHHHHHHhhhhhee
Confidence 99999999988744 9999999999999999987543
No 340
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.83 E-value=2.4e-21 Score=166.82 Aligned_cols=166 Identities=20% Similarity=0.094 Sum_probs=110.8
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-Cc----cccccccchheeehhhhcc---
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-SL----QKKISVCSFILIRRAYFFK--- 74 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-~~----~~~~~~~~~~~l~~~~lg~--- 74 (183)
.+++|+ +|++.+|+++||||+||||||||||+|+|...|++|+|...+. .+ +........++...+..+.
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 466776 5569999999999999999999999999999999999988652 11 1100000000111000000
Q ss_pred -------------CCC--------Ccc----ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh
Q 036195 75 -------------LPN--------LKS----ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE 123 (183)
Q Consensus 75 -------------lp~--------l~~----l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~ 123 (183)
++. +.. +..+....++..++.-++++.. ++++.+||||||++ +.++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pD 173 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPD 173 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 000 000 0001112345667777888877 99999999999973 488888
Q ss_pred hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+ ||.---|.++..-++.++. .... +++++|||-++--..|.+++=||
T Consensus 174 lLLLDEPTNHLD~~~i~WLe~~L~---~~~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 174 LLLLDEPTNHLDLESIEWLEDYLK---RYPG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred EEEEcCCCcccCHHHHHHHHHHHH---hCCC-cEEEEeCCHHHHHHHhhheEEec
Confidence 86 6666666666666666665 2223 89999999999999999988766
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=1.4e-21 Score=160.19 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=127.6
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCC
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN 77 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~ 77 (183)
...+++ ||++.+||.+||+|+||||||-..+.|++|++. -+|+|.|+|.++-.. +..+...+ +-.+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~------se~~lr~i-RG~~ 94 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA------SERQLRGV-RGNK 94 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC------CHHHHhhh-cccc
Confidence 345666 667999999999999999999999999999854 378999999876431 00000000 1112
Q ss_pred Ccccccccc----------------------------chHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecC
Q 036195 78 LKSICHEAL----------------------------AFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIG 120 (183)
Q Consensus 78 l~~l~~~~~----------------------------~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~ 120 (183)
+.++||+++ ..+.+++++.+++++ ..+.++++|||||+|+ +++
T Consensus 95 I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 95 IGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred eEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 233343322 234678899999964 5677899999999994 488
Q ss_pred chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 121 EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 121 ~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+|+.+ ||..--|...+..+..++..++.+...+++.++|||..|-+++|||++.
T Consensus 175 ~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM 231 (534)
T COG4172 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM 231 (534)
T ss_pred CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence 99997 8899999999999999999999999999999999999999999999976
No 342
>PLN03140 ABC transporter G family member; Provisional
Probab=99.82 E-value=4.2e-21 Score=181.39 Aligned_cols=171 Identities=12% Similarity=0.028 Sum_probs=121.8
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcccc-----ccc--------cchhe
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKK-----ISV--------CSFIL 66 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~-----~~~--------~~~~~ 66 (183)
.+++|++++ +++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++.+. ..+ ...++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 456888665 8999999999999999999999999999998 99999999865321 000 01122
Q ss_pred eehhhhcc-CCCCc-------cccccc--------cc----------------hHHHHHHHHcCCCCcc-----CCCCCC
Q 036195 67 IRRAYFFK-LPNLK-------SICHEA--------LA----------------FPCLERIYVHGCPSLR-----KLPFSL 109 (183)
Q Consensus 67 l~~~~lg~-lp~l~-------~l~~~~--------~~----------------~~~l~vLe~l~L~~L~-----~~~~~~ 109 (183)
.+.+.+.. ..... ...... .. .....+++.+++.+.+ +..+..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 22222110 00000 000000 00 0124578889997654 556789
Q ss_pred CChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCcee-eeeecccceEEEEe
Q 036195 110 ESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTY-EATIRPRYELICID 175 (183)
Q Consensus 110 LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 175 (183)
+||||||++ .++|+.+ |+....|..+...+...+..+..+...++++++|+. .++...+|+|+.|+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 999999843 6777775 889999999999999999888766678999999986 58889999999996
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=2.7e-21 Score=172.42 Aligned_cols=166 Identities=10% Similarity=-0.034 Sum_probs=115.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEEEecCccccc-cc--------cchheeehhh
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF---SDMSHKFAIYAVSLQKKI-SV--------CSFILIRRAY 71 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~~g~~~~~~~-~~--------~~~~~l~~~~ 71 (183)
+++|+ ||+|.+|+++||+||||||||||||+|+|.. .|++|+|.+.++.+.... .. ..........
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 45777 5569999999999999999999999999864 689999987665432110 00 0000000000
Q ss_pred hccCCC-----------------Ccccccc-------------------ccchHHHHHHHHcCCC-CccCCCCCCCChhh
Q 036195 72 FFKLPN-----------------LKSICHE-------------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKR 114 (183)
Q Consensus 72 lg~lp~-----------------l~~l~~~-------------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGq 114 (183)
+++.++ ....... ....++.++++.+++. ...++++.+|||||
T Consensus 270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~ 349 (718)
T PLN03073 270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW 349 (718)
T ss_pred HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence 111111 0000000 0112345567777875 56788999999999
Q ss_pred hhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 115 NGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 115 k~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+++ +..+|+.+ ||....|+..+..+..++... ..+++++|||++.+...||+++.|+
T Consensus 350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d~i~~l~ 415 (718)
T PLN03073 350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVTDILHLH 415 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 983 47788887 899999999999998888764 4689999999999999999999997
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=2.3e-21 Score=140.18 Aligned_cols=155 Identities=14% Similarity=0.042 Sum_probs=113.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCccccc----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH---- 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~---- 83 (183)
+++|.+||++.|+||+|||||||+..+.|.+.++ +|+++++++++.... ... ..+|.+.|...+|.
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-----a~q--Rq~GiLFQD~lLFphlsV 94 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-----AAQ--RQIGILFQDALLFPHLSV 94 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-----hhh--hheeeeeccccccccccc
Confidence 6789999999999999999999999999999774 899999998765320 000 12222222221211
Q ss_pred --------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCcccccccc
Q 036195 84 --------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 84 --------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
+........+++..++..+.++.+.++|||||- .+..+|+.. ||++..|.+.++.|.
T Consensus 95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR 174 (213)
T COG4136 95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174 (213)
T ss_pred ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHH
Confidence 111223567899999999999999999999985 347788775 889999999999888
Q ss_pred cceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIRPRYELIC 173 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (183)
...-.-.-...+-++|++||+.-|-+ --|||=
T Consensus 175 ~wVFs~~r~agiPtv~VTHD~~Dvpa-gsrVie 206 (213)
T COG4136 175 QWVFSEVRAAGIPTVQVTHDLQDVPA-GSRVIE 206 (213)
T ss_pred HHHHHHHHhcCCCeEEEecccccCCC-CCeeee
Confidence 76444444557888899999988763 335553
No 345
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=8.9e-21 Score=180.57 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=119.6
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+++ +|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+. ....++ ..++++||...+|..
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i----~l~~LR-~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY----GLRELR-RQFSMIPQDPVLFDG 1398 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC----CHHHHH-hcceEECCCCccccc
Confidence 488865 5899999999999999999999999999999999999999988653 111222 356777776655542
Q ss_pred -----------ccchHHHHHHHHcCCCCcc-------CCC----CCCCChhhhhe------ecCc-hhhc---ccccccC
Q 036195 85 -----------ALAFPCLERIYVHGCPSLR-------KLP----FSLESGKRNGV------LIGE-EEWW---NQLEWDD 132 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L~-------~~~----~~~LSgGqk~~------i~~~-~~w~---~~l~~~d 132 (183)
..+.++.++++.+++.+.. +.. ...|||||||+ +..+ +..+ |+..-.|
T Consensus 1399 TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD 1478 (1560)
T PTZ00243 1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 (1560)
T ss_pred cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCC
Confidence 2234567778887775421 222 35699999983 2443 4554 7788889
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++...++..+..... .+++++++|.++.+ +.||+|+++|
T Consensus 1479 ~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti-~~~DrIlVLd 1518 (1560)
T PTZ00243 1479 PALDRQIQATVMSAFS--AYTVITIAHRLHTV-AQYDKIIVMD 1518 (1560)
T ss_pred HHHHHHHHHHHHHHCC--CCEEEEEeccHHHH-HhCCEEEEEE
Confidence 9888888877764322 48899999999755 6699999997
No 346
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.81 E-value=4.6e-21 Score=138.14 Aligned_cols=103 Identities=22% Similarity=0.146 Sum_probs=75.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc-----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA----- 85 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~----- 85 (183)
++++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... .......++++++...++...
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-----IEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-----HHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 4679999999999999999999999999999999999999998776410 111123345555543333322
Q ss_pred -cchHHHHHHHHcCCCCccCCCC----CCCChhhhhee
Q 036195 86 -LAFPCLERIYVHGCPSLRKLPF----SLESGKRNGVL 118 (183)
Q Consensus 86 -~~~~~l~vLe~l~L~~L~~~~~----~~LSgGqk~~i 118 (183)
......++++.+++..+.+.++ .+||+||+|++
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl 117 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL 117 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHH
Confidence 1224667888888777666666 99999999843
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-20 Score=144.77 Aligned_cols=163 Identities=11% Similarity=-0.049 Sum_probs=114.4
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCC----
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN---- 77 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~---- 77 (183)
+++|+ +|+|++||+.+|+||||||||||.++|+|.- ++++|+|.|+|+++.... +..+....+.-..|
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~----~~ERAr~GifLafQ~P~e 92 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS----PDERARAGIFLAFQYPVE 92 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC----HhHHHhcCCEEeecCCcc
Confidence 58898 4569999999999999999999999999995 789999999999987531 00000001000000
Q ss_pred Ccccc-------------c--c-cc--chHHHHHHHHcCCCC-ccCCCCCC-CChhhhh--e----ecCchhhc---ccc
Q 036195 78 LKSIC-------------H--E-AL--AFPCLERIYVHGCPS-LRKLPFSL-ESGKRNG--V----LIGEEEWW---NQL 128 (183)
Q Consensus 78 l~~l~-------------~--~-~~--~~~~l~vLe~l~L~~-L~~~~~~~-LSgGqk~--~----i~~~~~w~---~~l 128 (183)
...+. . . .. .....+.++.+++.. +.++.++. +|||||+ + ++.+|++- |+=
T Consensus 93 i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~D 172 (251)
T COG0396 93 IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172 (251)
T ss_pred CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence 00000 0 0 01 123566788899976 78888875 9999997 3 36788884 778
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEE
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELIC 173 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 173 (183)
++.|..+-..+...++.++.. ..++++++|.=+..--. -|+|.+
T Consensus 173 SGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 173 SGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred cCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEE
Confidence 899998888888889888888 88999999975543322 255544
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=7.2e-21 Score=179.81 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=121.3
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+.+|++++ +++|++++|+|||||||||||++|+|..++ .+|+|.++|.+..... + ...+++++|....
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~----~----~~~igyv~Q~d~~ 964 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET----F----ARISGYCEQNDIH 964 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHH----h----hhheEEEcccccc
Confidence 36888664 899999999999999999999999999763 7899999997653210 0 0112222221100
Q ss_pred c------------------cc----ccchHHHHHHHHcCCCCccCCCC-----CCCChhhhhe------ecCchhhc---
Q 036195 82 C------------------HE----ALAFPCLERIYVHGCPSLRKLPF-----SLESGKRNGV------LIGEEEWW--- 125 (183)
Q Consensus 82 ~------------------~~----~~~~~~l~vLe~l~L~~L~~~~~-----~~LSgGqk~~------i~~~~~w~--- 125 (183)
+ .. .....+.++++.+++.+.++..+ ..|||||||+ +..+|+.+
T Consensus 965 ~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD 1044 (1470)
T PLN03140 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1044 (1470)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 0 00 01123567899999988888875 5899999983 47788886
Q ss_pred ccccccCcccccccccceeecCcccccCCCCCCceeee-eecccceEEEEe
Q 036195 126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEA-TIRPRYELICID 175 (183)
Q Consensus 126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 175 (183)
||....|..+...+...+..+..+ .++|++++|+.+. +...+|+++.++
T Consensus 1045 EPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1045 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 899999999999999999887655 7899999999994 678999999985
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=2.1e-20 Score=178.11 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+++ +|++||.+||+|++|||||||+++|.|++.|++|+|.++|.++.+.. ...+ +..++++||...+|..
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~----~~~L-R~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG----LHDL-RFKITIIPQDPVLFSG 1374 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC----HHHH-HhcCeEECCCCcccCc
Confidence 689855 58999999999999999999999999999999999999999887531 1111 1346666776555432
Q ss_pred -----------ccchHHHHHHHHcCCCCc-------cCCC----CCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 85 -----------ALAFPCLERIYVHGCPSL-------RKLP----FSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 -----------~~~~~~l~vLe~l~L~~L-------~~~~----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
..+.+..++++.+++.+. .+.. ...|||||||+ +..++..+ |+..-.|.
T Consensus 1375 TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957 1375 SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 223356667777766322 2223 34699999983 35566665 78889999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++...++..+.... + .+++++++|.++.++ .+|+|+++|
T Consensus 1455 ~Te~~Iq~~l~~~~-~-~~TvI~IAHRl~ti~-~~DrIlVld 1493 (1522)
T TIGR00957 1455 ETDNLIQSTIRTQF-E-DCTVLTIAHRLNTIM-DYTRVIVLD 1493 (1522)
T ss_pred HHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEE
Confidence 98888888776443 2 589999999997755 589999998
No 350
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2e-20 Score=162.45 Aligned_cols=163 Identities=14% Similarity=0.071 Sum_probs=112.2
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
..+||++| +|++||++||+||||+||||+.++|..++.|++|+|.+||.++.+.+ +..-+..++.+.|...+|
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-----~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-----HKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-----HHHHHHHeeeeeccceee
Confidence 45788866 58999999999999999999999999999999999999999987531 111112333333333222
Q ss_pred c------------cccchHHHHHHHHcCC-------CC----ccCCCCCCCChhhhheecC------chhhc---ccccc
Q 036195 83 H------------EALAFPCLERIYVHGC-------PS----LRKLPFSLESGKRNGVLIG------EEEWW---NQLEW 130 (183)
Q Consensus 83 ~------------~~~~~~~l~vLe~l~L-------~~----L~~~~~~~LSgGqk~~i~~------~~~w~---~~l~~ 130 (183)
. +....++.++.+..++ ++ .-..+-.+|||||||+|+- +|.-+ |..+=
T Consensus 555 s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSA 634 (716)
T KOG0058|consen 555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSA 634 (716)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 2 2223344545444443 22 2234455799999996644 44443 55666
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|.+....++.-+..+... ++++++.|-|.. ++.+|++.++|
T Consensus 635 LDaeSE~lVq~aL~~~~~~--rTVlvIAHRLST-V~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 635 LDAESEYLVQEALDRLMQG--RTVLVIAHRLST-VRHADQIVVID 676 (716)
T ss_pred cchhhHHHHHHHHHHhhcC--CeEEEEehhhhH-hhhccEEEEEc
Confidence 7777777777777665555 899999999975 46688888887
No 351
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.80 E-value=5.9e-21 Score=146.25 Aligned_cols=156 Identities=15% Similarity=0.046 Sum_probs=107.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc---------EEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH---------KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G---------~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
++++.+| +++|+||||||||||+++|+|+..|..| ++.+.|.+.... +. ...++++++....
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~v~~vfq~~~~ 87 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP------AN--FAEVTLTFDNSDG 87 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC------Cc--eEEEEEEEEcCCC
Confidence 5568899 9999999999999999999999876633 455555443210 00 1223333332211
Q ss_pred c-ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------c----Cchhhc---ccccccCcccccccccceeecC
Q 036195 82 C-HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------I----GEEEWW---NQLEWDDEATKHVFSSKLIITT 147 (183)
Q Consensus 82 ~-~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~ 147 (183)
+ .........++++. ....+.++.+||+||+|++ + ..++.+ ||...-|+..+..+...+..+.
T Consensus 88 ~~~~~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~ 164 (197)
T cd03278 88 RYSIISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS 164 (197)
T ss_pred ceeEEehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 1 10012234555555 5677889999999999832 1 344655 8899999999999998888775
Q ss_pred cccccCCCCCCceeeeeecccceEEEEeeCCCCC
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICIDVDDTGH 181 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (183)
. ...|+++||++++ ++.||+++-+=-+..|-
T Consensus 165 ~--~~tiIiitH~~~~-~~~~d~v~~~~~~~~~~ 195 (197)
T cd03278 165 K--ETQFIVITHRKGT-MEAADRLYGVTMQESGV 195 (197)
T ss_pred c--CCEEEEEECCHHH-HhhcceEEEEEeccCCC
Confidence 4 3679999999987 57899999887665553
No 352
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=1.1e-20 Score=147.55 Aligned_cols=84 Identities=10% Similarity=-0.122 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
..+.++.+++.. ..+.++.+|||||+|+ ++.+| +.| ||....|+.++..+..++..+..+ ..+++++
T Consensus 117 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~i 195 (226)
T cd03270 117 RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVV 195 (226)
T ss_pred HHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 356788899986 4788999999999983 25565 465 899999999999999999877544 7899999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++ +.||+++.++
T Consensus 196 tH~~~~~-~~~d~i~~l~ 212 (226)
T cd03270 196 EHDEDTI-RAADHVIDIG 212 (226)
T ss_pred EeCHHHH-HhCCEEEEeC
Confidence 9999975 7999999993
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=2.9e-20 Score=176.73 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=119.7
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|+++ +|++||.+||+|++|||||||+++|.|++. ++|+|.++|.++... ....+ +..++++||...+|.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i----~~~~l-R~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV----TLQTW-RKAFGVIPQKVFIFS 1305 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccC----CHHHH-HhceEEEeCCCccCc
Confidence 4688865 589999999999999999999999999996 899999999987642 11111 134667777666654
Q ss_pred c-----------ccchHHHHHHHHcCCCCcc-------CCCC----CCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSLR-------KLPF----SLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L~-------~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. ..+.+..++++.+++.+.. +.++ ..|||||||+ +..++..+ |+..-.|
T Consensus 1306 GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1306 GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 2 1233466778887774322 2222 3599999983 35566665 8899999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++...++..+..... .+++++++|.++.++ .+|+|+++|
T Consensus 1386 ~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~~DrIlvL~ 1425 (1490)
T TIGR01271 1386 PVTLQIIRKTLKQSFS--NCTVILSEHRVEALL-ECQQFLVIE 1425 (1490)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEE
Confidence 9998888888875432 589999999998665 599999997
No 354
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=5.5e-20 Score=144.81 Aligned_cols=157 Identities=9% Similarity=0.032 Sum_probs=101.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh----------------cCCCCCCc--------EEEEEecCccccccccchheeehhhh
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLN----------------DMFSDMSH--------KFAIYAVSLQKKISVCSFILIRRAYF 72 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~----------------gl~~p~~G--------~I~~~g~~~~~~~~~~~~~~l~~~~l 72 (183)
|++++|+||||||||||+++|+ +++.+.+| +|.|++.+.+.... .........+
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~--~~~~~i~r~i 100 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID--KEEVRLRRTI 100 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC--CCEEEEEEEE
Confidence 8899999999999999999998 45556666 55555432111000 0000001124
Q ss_pred ccCCCCcccccc-ccchHHHHHHHHcCCCC--------------------ccCCCCCCCChhhhhe--e----c----Cc
Q 036195 73 FKLPNLKSICHE-ALAFPCLERIYVHGCPS--------------------LRKLPFSLESGKRNGV--L----I----GE 121 (183)
Q Consensus 73 g~lp~l~~l~~~-~~~~~~l~vLe~l~L~~--------------------L~~~~~~~LSgGqk~~--i----~----~~ 121 (183)
++.++...++.. ....+....++.+++.. ..+.++..||+||+|+ + + .+
T Consensus 101 g~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 101 GLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred ECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 555544334331 22334455555555432 3457889999999882 2 1 24
Q ss_pred hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeCC
Q 036195 122 EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDD 178 (183)
Q Consensus 122 ~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (183)
|..+ ||...-|+..+..+...+..+.. ...+++++|+ .++++.||+++.|+++.
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~-~~~~~~~d~i~~l~~~~ 237 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR-PELLEVADKFYGVKFRN 237 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC-HHHHhhCCEEEEEEEEC
Confidence 5665 88999999999999888877643 3556666666 56789999999999986
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=4.9e-20 Score=158.77 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=110.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--- 80 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--- 80 (183)
+++++++ .|.+|+.+||+||||+|||||||+|+|...|.+|+|.+... + .++|++|...
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------------~igyf~Q~~~~l~ 398 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------------KIGYFDQHRDELD 398 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e---------------EEEEEEehhhhcC
Confidence 5678755 58999999999999999999999999999999999987532 1 1222222110
Q ss_pred -----------ccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCccccccc
Q 036195 81 -----------ICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 81 -----------l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
.++......+...+..++++ +....|+..||||||.++ ..+|..+ ||.-=-|.+++..+
T Consensus 399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence 01111134567788888885 456889999999999743 4455553 66666677777777
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+. ++-.+++++|||-+++-+.++++|.+.
T Consensus 479 e~aL~----~f~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 479 EEALL----DFEGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred HHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence 66554 567789999999999999999999886
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=1.2e-19 Score=172.92 Aligned_cols=159 Identities=13% Similarity=-0.001 Sum_probs=105.5
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.- .++. ..+..+..+.+.++.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~-~l~~~Ti~eNI~~g~------ 723 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA-WIQNDSLRENILFGK------ 723 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCc-cccCCcHHHHhhcCC------
Confidence 4688855 589999999999999999999999999999999999998631 0000 000111111111111
Q ss_pred ccccccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 81 ICHEALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
........++++.+++. .........|||||||+ ++.+++.+ |++...|+.+...+.
T Consensus 724 ---~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~ 800 (1522)
T TIGR00957 724 ---ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800 (1522)
T ss_pred ---ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 01111223333333221 13345677899999984 47777776 899999998777776
Q ss_pred cceeec-CcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SKLIIT-TPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+... ......+++++||+++.+.. +|+++++|
T Consensus 801 ~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~ 835 (1522)
T TIGR00957 801 EHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS 835 (1522)
T ss_pred HHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec
Confidence 655432 22235789999999987655 99999997
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=7.1e-20 Score=174.11 Aligned_cols=157 Identities=12% Similarity=0.045 Sum_probs=104.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|+++ ++++||+++|+|||||||||||++|+|+++|++|+|.++|.- .+.. -.+..+..+.+.++. +
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~-~l~~~Ti~eNI~~g~-~---- 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTS-WIMPGTIKDNIIFGL-S---- 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCC-ccCCccHHHHHHhcc-c----
Confidence 4688865 589999999999999999999999999999999999998731 0100 001112222222221 0
Q ss_pred ccccccchHHHHHHHHcCC---------C--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 81 ICHEALAFPCLERIYVHGC---------P--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L---------~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
.......++++.+++ . .....+...|||||||+ ++.+|+.+ ||+...|+.+...+.
T Consensus 513 ----~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~ 588 (1490)
T TIGR01271 513 ----YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588 (1490)
T ss_pred ----cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 001112223332222 1 12334567899999984 36777776 899999998887777
Q ss_pred cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.. +..+. + ..+++++||+++.+- .||++++++
T Consensus 589 ~~~l~~~~-~-~~tvilvtH~~~~~~-~ad~ii~l~ 621 (1490)
T TIGR01271 589 ESCLCKLM-S-NKTRILVTSKLEHLK-KADKILLLH 621 (1490)
T ss_pred HHHHHHHh-c-CCeEEEEeCChHHHH-hCCEEEEEE
Confidence 53 44332 2 688999999999864 599999997
No 358
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.4e-19 Score=163.31 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=111.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.+||+ ||+|++|+.++|+|||||||||++++|.+++.|++|+|.++|.++++... ..++ ..++-+.|...+|.
T Consensus 366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~----~~lr-~~iglV~QePvlF~ 440 (1228)
T KOG0055|consen 366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL----KWLR-SQIGLVSQEPVLFA 440 (1228)
T ss_pred chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch----HHHH-hhcCeeeechhhhc
Confidence 46777 45699999999999999999999999999999999999999998875321 0000 12222222221111
Q ss_pred ------------cccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195 84 ------------EALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ------------~~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
+....++.++.+..+. .......--+|||||||+| ..+|+-+ |+..--
T Consensus 441 ~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL 520 (1228)
T KOG0055|consen 441 TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL 520 (1228)
T ss_pred ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc
Confidence 1222233444333322 2233333445999999954 5566664 778888
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|++.+..++..++..... ++.++++|.|..+. .+|+++.++
T Consensus 521 D~~se~~Vq~ALd~~~~g--rTTivVaHRLStIr-naD~I~v~~ 561 (1228)
T KOG0055|consen 521 DAESERVVQEALDKASKG--RTTIVVAHRLSTIR-NADKIAVME 561 (1228)
T ss_pred CHHHHHHHHHHHHHhhcC--CeEEEEeeehhhhh-ccCEEEEEE
Confidence 998888888888765554 69999999998655 499999886
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.76 E-value=3.8e-19 Score=149.22 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=120.6
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
.+|+++ ||++.+||.+|||||||||||||.|+|.|..+|.+|.|+++|-++.... ... --..+||+||.-.+|
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd----~e~-lG~hiGYLPQdVeLF 422 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD----REQ-LGRHIGYLPQDVELF 422 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC----HHH-hccccCcCcccceec
Confidence 578887 5569999999999999999999999999999999999999998876531 011 114578999876665
Q ss_pred ccc-----c-------chHHHHHHHHc-------CCCCccCCCC----CCCChhhhhe------ecCchhhc---ccccc
Q 036195 83 HEA-----L-------AFPCLERIYVH-------GCPSLRKLPF----SLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 83 ~~~-----~-------~~~~l~vLe~l-------~L~~L~~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
... . ...+.++-... .++.=-+.++ ..|||||||+ ++|+|.+. ||=.-
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 421 1 11233332222 2333333333 4699999995 48999986 77777
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|.+....+..-+...+.+ .+.+.+++|--. ++..+|+|..+.
T Consensus 503 LD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs-~L~~~Dkilvl~ 545 (580)
T COG4618 503 LDSEGEAALAAAILAAKAR-GGTVVVIAHRPS-ALASVDKILVLQ 545 (580)
T ss_pred cchhHHHHHHHHHHHHHHc-CCEEEEEecCHH-HHhhcceeeeec
Confidence 8888888888888888888 888888898754 577888887764
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=1.9e-19 Score=171.63 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=103.5
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++++|++++|+||||||||||+++|+|+++|++|+|.+.+.- .+.. ..+..+..+.+.++. +....
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~-~l~~~Tv~enI~~~~-~~~~~ 750 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQA-WIMNATVRGNILFFD-EEDAA 750 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCC-ccCCCcHHHHHHcCC-hhhHH
Confidence 457875 5699999999999999999999999999999999999874310 0000 000111111111110 00000
Q ss_pred cccccc-chHHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc-cceeecC
Q 036195 81 ICHEAL-AFPCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS-SKLIITT 147 (183)
Q Consensus 81 l~~~~~-~~~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~ 147 (183)
.+.... .....+.++.+ ++....+.+...|||||||+ +..+|+.+ ||+...|+.+...+. .++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 000000 00111223333 45555667789999999983 47778876 899999987655443 3333221
Q ss_pred cccccCCCCCCceeeeeecccceEEEEe
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+++++||+++.+ ..+|++++++
T Consensus 831 --~~~TvIlvTH~~~~~-~~ad~ii~l~ 855 (1560)
T PTZ00243 831 --AGKTRVLATHQVHVV-PRADYVVALG 855 (1560)
T ss_pred --CCCEEEEEeCCHHHH-HhCCEEEEEE
Confidence 267899999999986 6799999997
No 361
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=8.6e-19 Score=128.35 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=114.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--ccccccchheeehhhhccCCCCccccccccc-
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KKISVCSFILIRRAYFFKLPNLKSICHEALA- 87 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~- 87 (183)
.|+-++||.+.++||+|||||||+|.++-+.-|.+|+..+.+.... +.........++ ..+| ++||....
T Consensus 22 ~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr-~~vg------mvfqqy~lw 94 (242)
T COG4161 22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR-RNVG------MVFQQYNLW 94 (242)
T ss_pred eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH-Hhhh------hhhhhhccC
Confidence 4457899999999999999999999999999999999999875332 110000000000 1122 22322222
Q ss_pred -------------------------hHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 88 -------------------------FPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 88 -------------------------~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
.+.++++..+.+..++++.+-.|||||+|+ ++++|.-+ ||..-.||
T Consensus 95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 234667788889999999999999999883 36777765 77888888
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
++-..+-.+|+.+... .+.-.+++|.++..-..+-+|+-.+
T Consensus 175 eitaqvv~iikel~~t-gitqvivthev~va~k~as~vvyme 215 (242)
T COG4161 175 EITAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYME 215 (242)
T ss_pred HHHHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeee
Confidence 8888888888777654 8888889999999999888887654
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9.4e-19 Score=128.96 Aligned_cols=166 Identities=15% Similarity=0.068 Sum_probs=115.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc-ccccccchh--eeehhhhccCCCCc-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ-KKISVCSFI--LIRRAYFFKLPNLK- 79 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-~~~~~~~~~--~l~~~~lg~lp~l~- 79 (183)
-||++ ||+|+.|||+++-||+|||||||||++-|-+.|++|+|.+.-..-+ +.....+.. ..+...+||+.|.-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 36776 5679999999999999999999999999999999999999754321 110000111 11223345544421
Q ss_pred cccc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee-------cCchhhc--cccccc
Q 036195 80 SICH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL-------IGEEEWW--NQLEWD 131 (183)
Q Consensus 80 ~l~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i-------~~~~~w~--~~l~~~ 131 (183)
.+++ +........++..++++ .|..+++.++||||+|++ .-.|-++ ||..-.
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 1111 11112345678888887 478999999999999854 2333333 788888
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI 172 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (183)
|...+...-.+|..-+.+ .+++.=+=||-+.--+.+||++
T Consensus 184 Da~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 184 DATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred cccchHHHHHHHHHHHhc-CceEEEeeccHHHHHHHhhhee
Confidence 888888888888877766 8888888888776668888875
No 363
>PLN03130 ABC transporter C family member; Provisional
Probab=99.72 E-value=3.2e-18 Score=163.59 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=105.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+++|+++ ++++||.++|+||+|||||||+++|+|.++|++ |+|.+.+. ++|++|...++
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~------------------Iayv~Q~p~Lf 691 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT------------------VAYVPQVSWIF 691 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe------------------EEEEcCccccC
Confidence 4678855 589999999999999999999999999999999 99987542 22333332222
Q ss_pred c-----------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 83 H-----------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 83 ~-----------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ........++++.+++.+ ........|||||||+ +..+++.+ |+++-.
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 1 112334566777666532 1122345699999984 36666665 889999
Q ss_pred Ccccc-cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATK-HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.+. +.++..+.... ..+++++++|+++ .++.+|+||.+|
T Consensus 772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~-~l~~aD~Ii~L~ 813 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH-FLSQVDRIILVH 813 (1622)
T ss_pred CHHHHHHHHHHHhhHHh--cCCEEEEEECCHh-HHHhCCEEEEEe
Confidence 97644 45566665432 2578999999996 478899999997
No 364
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.9e-18 Score=126.94 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=111.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc-----
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA----- 85 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~----- 85 (183)
||++.+||+.||+|++|||||||+++|++-+.|++|+|.+.-.+-+....+ ..+..++..+.+ ...+.+.|++
T Consensus 26 sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~-~msEaeRR~L~R-TeWG~VhQnP~DGLR 103 (258)
T COG4107 26 SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY-TMSEAERRRLLR-TEWGFVHQNPRDGLR 103 (258)
T ss_pred ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh-hhchHHHHHHhh-hccceeecCccccce
Confidence 778999999999999999999999999999999999999975432211000 000000000000 0001111110
Q ss_pred -----------------------cchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 86 -----------------------LAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 86 -----------------------~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
........++.+.++. ..+-.+..+||||+|+ +...|.+. ||....|
T Consensus 104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLD 183 (258)
T COG4107 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183 (258)
T ss_pred eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcc
Confidence 0113456788887753 3455568999998873 35556664 7889999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
...+.++..++..+..+...++.|++||+-.+.=.++|..+.
T Consensus 184 VSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvm 225 (258)
T COG4107 184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM 225 (258)
T ss_pred hhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceee
Confidence 999999999999999999999999999998776666666543
No 365
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=4.4e-18 Score=162.13 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=103.4
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||.++|+||+|||||||+++|+|.++|++|.+..-.. .+++++|...++.
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~-----------------~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG-----------------SVAYVPQVSWIFN 692 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecC-----------------cEEEEcCcccccc
Confidence 4688855 58999999999999999999999999999999986632111 2233333332222
Q ss_pred -----------cccchHHHHHHHHcCCCC-cc----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 84 -----------EALAFPCLERIYVHGCPS-LR----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 -----------~~~~~~~l~vLe~l~L~~-L~----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.....+..++++.+++.+ +. ......|||||||+ +..+++.+ |+++-.|
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 112334566777666532 11 12234699999984 36677765 8899999
Q ss_pred ccccc-ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKH-VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.+.. .++..+.... ..+++++++|+++. ++.+|++|.+|
T Consensus 773 ~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~-l~~aD~Ii~L~ 813 (1495)
T PLN03232 773 AHVAHQVFDSCMKDEL--KGKTRVLVTNQLHF-LPLMDRIILVS 813 (1495)
T ss_pred HHHHHHHHHHHhhhhh--cCCEEEEEECChhh-HHhCCEEEEEe
Confidence 76544 4556555432 35788999999975 78899999997
No 366
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.7e-18 Score=140.72 Aligned_cols=151 Identities=17% Similarity=0.063 Sum_probs=96.9
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc--cc-hheeehhhhccCCCCccccccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV--CS-FILIRRAYFFKLPNLKSICHEALA 87 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~--~~-~~~l~~~~lg~lp~l~~l~~~~~~ 87 (183)
++++++||++-|+|.|||||||+++++.|+++|++|+|.++|.++...... .. |+. ......-.+++....+.+.+
T Consensus 343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa-vFsDyhLF~~ll~~e~~as~ 421 (546)
T COG4615 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA-VFSDYHLFDQLLGPEGKASP 421 (546)
T ss_pred eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH-HhhhHhhhHhhhCCccCCCh
Confidence 678999999999999999999999999999999999999999987653210 00 000 00001111222111122333
Q ss_pred hHHHHHHHHcCC---CCccCCCC--CCCChhhhheecCchhhccc------ccc---cCcccccccccceeecCcccccC
Q 036195 88 FPCLERIYVHGC---PSLRKLPF--SLESGKRNGVLIGEEEWWNQ------LEW---DDEATKHVFSSKLIITTPQTVIS 153 (183)
Q Consensus 88 ~~~l~vLe~l~L---~~L~~~~~--~~LSgGqk~~i~~~~~w~~~------l~~---~d~~~~~~~~~~~~~~~~~~~~~ 153 (183)
..+...++.+.+ ..+.+..+ -.||.|||++++.=-.|.|. =|| .||.-+.-||...-+.-++.+.+
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 444455555544 34555544 46899999865433333311 133 36777888887766666666999
Q ss_pred CCCCCceee
Q 036195 154 IPQPSYTYE 162 (183)
Q Consensus 154 ~~~~~~~~~ 162 (183)
|+-+|||=+
T Consensus 502 I~aIsHDd~ 510 (546)
T COG4615 502 IFAISHDDH 510 (546)
T ss_pred EEEEecCch
Confidence 999999954
No 367
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.68 E-value=3.3e-18 Score=132.46 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=96.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEEEe-cC-ccccc----cccchheeeh-hhhccCCCCccccccccc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM-FSDMSHKFAIYA-VS-LQKKI----SVCSFILIRR-AYFFKLPNLKSICHEALA 87 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g-~~-~~~~~----~~~~~~~l~~-~~lg~lp~l~~l~~~~~~ 87 (183)
+|++++|+||||||||||+++|++. +.+..+...... .+ +.... ....|..... ....+.+ .+ ....
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~---gl--~~~~ 101 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSR---GL--DYDQ 101 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEec---CC--CHHH
Confidence 4789999999999999999999964 344444443320 00 00000 0000000000 0000000 00 0001
Q ss_pred hHHHHHHHHcCCCCccCCCCCCCChhhhhee------cC----------chhhc---ccccccCcccccccccceeecCc
Q 036195 88 FPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IG----------EEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 88 ~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~----------~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
+.....++..++..+.+.++.+||+||++++ +. +|+.+ ||+...|+..+..+..++..+..
T Consensus 102 ~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~ 181 (213)
T cd03279 102 FTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT 181 (213)
T ss_pred HHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 1111123445566778899999999999832 22 34554 88999999999999988887765
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+ ..+++++||+++.+...+|++++++
T Consensus 182 ~-~~tii~itH~~~~~~~~~~~i~~~~ 207 (213)
T cd03279 182 E-NRMVGVISHVEELKERIPQRLEVIK 207 (213)
T ss_pred C-CCEEEEEECchHHHHhhCcEEEEEe
Confidence 5 7799999999999999999999987
No 368
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.67 E-value=4.1e-18 Score=131.20 Aligned_cols=159 Identities=13% Similarity=-0.061 Sum_probs=100.0
Q ss_pred ccceecCccEEEEEcCCCCcHHHHHHHHh----cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLN----DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~----gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
..+++.+| +++|+||||||||||+++|. |...|++|.+..+...+.... .. ..+....+... .+..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~------~~--~~v~~~f~~~~-~~~~ 85 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE------VR--AQVKLAFENAN-GKKY 85 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCC------Cc--EEEEEEEEeCC-CCEE
Confidence 35667888 99999999999999999995 998888887652211111100 00 00000000000 0000
Q ss_pred cchHHHHHHHHcC------CCCccCCCCCCCChhhhhe------------ecCchhhc---ccccccCccccc-ccccce
Q 036195 86 LAFPCLERIYVHG------CPSLRKLPFSLESGKRNGV------------LIGEEEWW---NQLEWDDEATKH-VFSSKL 143 (183)
Q Consensus 86 ~~~~~l~vLe~l~------L~~L~~~~~~~LSgGqk~~------------i~~~~~w~---~~l~~~d~~~~~-~~~~~~ 143 (183)
...+..++.+++. +..+.+.++.+||+||+++ +..+|+.+ ||....|+..+. .+..++
T Consensus 86 ~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l 165 (204)
T cd03240 86 TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII 165 (204)
T ss_pred EEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 0000001111110 1123377889999999883 14577775 889999999988 999999
Q ss_pred eecCcccccCCCCCCceeeeeecccceEEEEeeCCC
Q 036195 144 IITTPQTVISIPQPSYTYEATIRPRYELICIDVDDT 179 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (183)
..+..+...+++++||+.+.+ +.+|+++-++=|.-
T Consensus 166 ~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~~~~ 200 (204)
T cd03240 166 EERKSQKNFQLIVITHDEELV-DAADHIYRVEKDGR 200 (204)
T ss_pred HHHHhccCCEEEEEEecHHHH-hhCCEEEEEeeCCC
Confidence 877666578899999998865 67999998876543
No 369
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4.4e-17 Score=136.73 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=107.6
Q ss_pred cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
-+|+|+ ||++.+|+.+||+||+|+||||++|++..++..++|.|.++|+|+.+-. ...+ +..+|-+||...+|
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt----~~SL-Rs~IGVVPQDtvLF 624 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT----QSSL-RSSIGVVPQDTVLF 624 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH----HHHH-HHhcCcccCcceee
Confidence 578887 5569999999999999999999999999999999999999999986521 1111 13566777765555
Q ss_pred ccc------------cchHHHHHHHH-------cCCCCccC----CCCCCCChhhhhee------cCchhhc---ccccc
Q 036195 83 HEA------------LAFPCLERIYV-------HGCPSLRK----LPFSLESGKRNGVL------IGEEEWW---NQLEW 130 (183)
Q Consensus 83 ~~~------------~~~~~l~vLe~-------l~L~~L~~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~ 130 (183)
.+. ...++.++.+. ++.++--+ .+.-.|||||||++ .-.|..+ |..+-
T Consensus 625 NdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSA 704 (790)
T KOG0056|consen 625 NDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSA 704 (790)
T ss_pred cceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhh
Confidence 431 12223333222 33443323 23346999999954 3444443 44555
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|.++...++.-+..+- ..+..+++.|-|..+ -.+|.+.||+
T Consensus 705 LDT~tER~IQaaL~rlc--a~RTtIVvAHRLSTi-vnAD~ILvi~ 746 (790)
T KOG0056|consen 705 LDTNTERAIQAALARLC--ANRTTIVVAHRLSTI-VNADLILVIS 746 (790)
T ss_pred cCCccHHHHHHHHHHHh--cCCceEEEeeeehhe-ecccEEEEEe
Confidence 55555544444433222 257788889998754 5789999997
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.66 E-value=1.4e-17 Score=131.96 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=102.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEec-Ccccc----------cc-cc----------------chhe
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAV-SLQKK----------IS-VC----------------SFIL 66 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~-~~~~~----------~~-~~----------------~~~~ 66 (183)
...+++|+||||||||||+++|++++.|+ .|++.+.+. ++... .. .+ ..+.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 35599999999999999999999999886 457777654 22110 00 00 0001
Q ss_pred eehhhhccCCCCcc-cc-ccccchHHHHHHHHcCCC--------------------CccCCCCCCCChhhhh--eec---
Q 036195 67 IRRAYFFKLPNLKS-IC-HEALAFPCLERIYVHGCP--------------------SLRKLPFSLESGKRNG--VLI--- 119 (183)
Q Consensus 67 l~~~~lg~lp~l~~-l~-~~~~~~~~l~vLe~l~L~--------------------~L~~~~~~~LSgGqk~--~i~--- 119 (183)
.+.+..+. .... +. .......+.++++.+++. ...+.++.+||+||+| .++
T Consensus 104 ~r~I~~~~--~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGG--TNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCC--ceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 11011100 0000 10 111234567788888885 4456788999999998 222
Q ss_pred -----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 120 -----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 120 -----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+.+ ||....|+..+..+..++..+. + ..+++++||+ +++++.||++|-+-
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECC-HHHHHhCCEEEEEE
Confidence 345665 8899999999999988887764 3 5689999999 77777899997654
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.64 E-value=1.6e-16 Score=145.06 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=109.4
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
..+||++| ++++|+.+|||||+||||||.+.+|-+++.|++|.|.++|.++.+.+.. .-+..++-+.|-..+|
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~-----~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK-----WLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH-----HHHHhcceeccCchhh
Confidence 45788865 5899999999999999999999999999999999999999998763210 0011222222222222
Q ss_pred c------------cccchHHHHHHHHc-------CCCCccCCC----CCCCChhhhhee------cCchhhc---ccccc
Q 036195 83 H------------EALAFPCLERIYVH-------GCPSLRKLP----FSLESGKRNGVL------IGEEEWW---NQLEW 130 (183)
Q Consensus 83 ~------------~~~~~~~l~vLe~l-------~L~~L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~~ 130 (183)
. .....++.++.+.. .+|.-.+.+ -.+||||||||| ..+|+.+ |..+=
T Consensus 1077 ~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1077 NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 1 11223344444433 344444444 457999999954 5566654 44565
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|-+....+|.-++.... .++.+++.|-|- ||+.||.++++|
T Consensus 1157 LDseSErvVQeALd~a~~--gRT~IvIAHRLS-TIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAME--GRTTIVIAHRLS-TIQNADVIAVLK 1198 (1228)
T ss_pred hhhhhHHHHHHHHHHhhc--CCcEEEEecchh-hhhcCCEEEEEE
Confidence 666666666665554433 488889999885 689999999987
No 372
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.3e-17 Score=132.74 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=114.7
Q ss_pred ccccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 4 LYRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 4 ~~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
.++|+|. |+++.+|+.++++||+|+||||+++++-.++.+++|.|.++|++++... ....+..++-+||...+
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt-----q~slR~aIg~VPQDtvL 348 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT-----QQSLRRAIGIVPQDTVL 348 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH-----HHHHHHHhCcCccccee
Confidence 4788887 5569999999999999999999999999999999999999999987521 11122456667775555
Q ss_pred cccc------------cchHHHHHHHHcC-------CCCccCCCCC----CCChhhhhee------cCchhhc---cccc
Q 036195 82 CHEA------------LAFPCLERIYVHG-------CPSLRKLPFS----LESGKRNGVL------IGEEEWW---NQLE 129 (183)
Q Consensus 82 ~~~~------------~~~~~l~vLe~l~-------L~~L~~~~~~----~LSgGqk~~i------~~~~~w~---~~l~ 129 (183)
+.+. ...++.++.+... +|+..+..+. .|||||||++ .-+|.-+ |..+
T Consensus 349 FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 349 FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 4321 1223333333332 3444444444 4899999943 3344443 5566
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-.|-.+...++.-++... ..+..+++-|-|..+ ..+|++||+|
T Consensus 429 aldt~te~~iq~~l~~~~--~~rttlviahrlsti-~~adeiivl~ 471 (497)
T COG5265 429 ALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTI-IDADEIIVLD 471 (497)
T ss_pred HhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhc-cCCceEEEee
Confidence 667677777776666544 478899999999754 5689999998
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.63 E-value=5.1e-17 Score=137.32 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=106.5
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc--ccccchheeehhhhccCCCCccccc-cccch
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK--ISVCSFILIRRAYFFKLPNLKSICH-EALAF 88 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~--~~~~~~~~l~~~~lg~lp~l~~l~~-~~~~~ 88 (183)
|-++.++.+++|||||||||||||++.|.+.|+.|.|.-.-...-.. ........+..-.+.+ ....+. .....
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~---~~~~~~~~~~~e 487 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF---MMPKFPDEKELE 487 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH---HHHhccccchHH
Confidence 45899999999999999999999999999999999996543221100 0000000000000000 000111 12233
Q ss_pred HHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195 89 PCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS 158 (183)
Q Consensus 89 ~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
....++..+|+. +....|+.+||.|||++| .-+|..+ ||+...|.+..+.+...++. .-.++..+|
T Consensus 488 ~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe----~~Ggvv~vS 563 (614)
T KOG0927|consen 488 EMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE----FPGGVVLVS 563 (614)
T ss_pred HHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc----cCCceeeee
Confidence 466788999997 678889999999999843 3344443 88999999988888888763 456788899
Q ss_pred ceeeeeecccceEEEE
Q 036195 159 YTYEATIRPRYELICI 174 (183)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (183)
||+..+-..++|++..
T Consensus 564 HDfrlI~qVaeEi~~c 579 (614)
T KOG0927|consen 564 HDFRLISQVAEEIWVC 579 (614)
T ss_pred chhhHHHHHHHHhHhh
Confidence 9999999999988754
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=1.3e-16 Score=127.00 Aligned_cols=84 Identities=8% Similarity=-0.075 Sum_probs=68.9
Q ss_pred HHHHHHHcCCCC-ccCCCCCCCChhhhhee------cCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPS-LRKLPFSLESGKRNGVL------IGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~i------~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..++++.+++.. ..++++.+|||||+|++ ..+ |++| ||...-|+..+..+..++..+..+ ..++++
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIi 227 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVV 227 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 466788899987 47899999999998832 333 5676 899999999999999998877644 789999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
++||++++ +.+|+++.+.
T Consensus 228 itH~~~~i-~~aD~ii~Lg 245 (261)
T cd03271 228 IEHNLDVI-KCADWIIDLG 245 (261)
T ss_pred EeCCHHHH-HhCCEEEEec
Confidence 99999986 5799988883
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=1.2e-16 Score=140.65 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=106.8
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCccccc-------------cccchhe
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQKKI-------------SVCSFIL 66 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~~~~-------------~~~~~~~ 66 (183)
++.+|++++ +++||+.||+||+||||||||++|+|-..+ .+|+|.++|+...... .....++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 688899886 899999999999999999999999999864 7999999995433210 0111222
Q ss_pred eehhhhccCCCCcc-ccccccchHHHHHHHHcCCCCccCCCCC-----CCChhhhhee------cCchhhc---cccccc
Q 036195 67 IRRAYFFKLPNLKS-ICHEALAFPCLERIYVHGCPSLRKLPFS-----LESGKRNGVL------IGEEEWW---NQLEWD 131 (183)
Q Consensus 67 l~~~~lg~lp~l~~-l~~~~~~~~~l~vLe~l~L~~L~~~~~~-----~LSgGqk~~i------~~~~~w~---~~l~~~ 131 (183)
.+.+.....-++.. +........+.++++.+++.+.++..++ .+||||||++ ..+|..+ ||..+-
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 22222111111110 1112223467889999999988888886 5999999843 5556665 888888
Q ss_pred CcccccccccceeecCcccccCCCCCCce
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|...-..+-..++.+..+ ++.|+++=|-
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQ 229 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQ 229 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 876666666677777777 7777766554
No 376
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=2.5e-16 Score=146.29 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=114.3
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
+||+++ +|++||.+||+|..|||||||+.++-++..|.+|+|.+||.|+.+. ....++ ..++-.||...+|..
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i----gL~dLR-srlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI----GLHDLR-SRLSIIPQDPVLFSG 1228 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc----cHHHHH-hcCeeeCCCCceecC
Confidence 567755 5999999999999999999999999999999999999999998753 112222 234555666655542
Q ss_pred c-----------cchHHHHHHHHcCCCCc-------cCCCC----CCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 85 A-----------LAFPCLERIYVHGCPSL-------RKLPF----SLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 85 ~-----------~~~~~l~vLe~l~L~~L-------~~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
. .+.+.=+++|.+++.+. .+.++ ..+|-||||. +..+.+-+ |...-.|+
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 1 12234556666666332 22233 3489999982 23333333 66778888
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
++-..+|.-|..- .. .|+|+-+-|.+|.||+ ||||+++|-
T Consensus 1309 ~TD~lIQ~tIR~~-F~-dcTVltIAHRl~TVmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1309 ETDALIQKTIREE-FK-DCTVLTIAHRLNTVMD-SDRVLVLDA 1348 (1381)
T ss_pred HHHHHHHHHHHHH-hc-CCeEEEEeeccchhhh-cCeEEEeeC
Confidence 7777777655432 22 6899999999999996 799999983
No 377
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=1.8e-16 Score=131.92 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=110.2
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc----cchheeehhhhccCCCCccccccccch
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV----CSFILIRRAYFFKLPNLKSICHEALAF 88 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~----~~~~~l~~~~lg~lp~l~~l~~~~~~~ 88 (183)
++..||++|++||||-||||+.++|+|.++|++|. ..+..+.-+... ..-++... +.. ...+. ....+
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~--l~~--~~~~~--~~~s~ 434 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDL--LRS--AIRSA--FGSSY 434 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHH--HHH--hhhhh--cccch
Confidence 46889999999999999999999999999999996 111111100000 00000000 000 00000 00112
Q ss_pred HHHHHHHHcCCCCccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195 89 PCLERIYVHGCPSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY 159 (183)
Q Consensus 89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
-..++++-+++..+.++++..|||||.|++ ..+.+.. ||-...|.+.+......|.-+....-.+.++++|
T Consensus 435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdH 514 (591)
T COG1245 435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514 (591)
T ss_pred hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEec
Confidence 235677888999999999999999998832 4455553 7888888888888888888888888889999999
Q ss_pred eeeeeecccceEEEEeeCC
Q 036195 160 TYEATIRPRYELICIDVDD 178 (183)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (183)
|+-+.-=.|||+|+.+=..
T Consensus 515 Di~~~dyvsDr~ivF~GeP 533 (591)
T COG1245 515 DIYMIDYVSDRLIVFEGEP 533 (591)
T ss_pred ceehhhhhhceEEEEecCC
Confidence 9999989999999987543
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=1.1e-17 Score=129.61 Aligned_cols=82 Identities=13% Similarity=-0.034 Sum_probs=64.6
Q ss_pred HHHHHcCCCCccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195 92 ERIYVHGCPSLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS 158 (183)
Q Consensus 92 ~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++++.++++...+.++..+|+||+++ + + ..|+.+ ||....|+..+..+...+..+.. ...++++|
T Consensus 110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs 187 (212)
T cd03274 110 EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVIS 187 (212)
T ss_pred cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEE
Confidence 45567777888888899999999882 2 2 135665 88999999999999999998753 36788889
Q ss_pred ceeeeeecccceEEEEee
Q 036195 159 YTYEATIRPRYELICIDV 176 (183)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~ 176 (183)
|+ +++++.||+++.+--
T Consensus 188 ~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 188 LR-NNMFELADRLVGIYK 204 (212)
T ss_pred Cc-HHHHHhCCEEEEEEe
Confidence 98 577899999987743
No 379
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.4e-16 Score=132.92 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=119.9
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc----------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---------- 80 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---------- 80 (183)
||++.+||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++.-.. +...-...++|+|..+.
T Consensus 279 Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s----p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 279 SFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS----PRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC----HHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 6889999999999999999999999999999999999999998765321 00011112333333210
Q ss_pred -----------------ccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 81 -----------------ICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 81 -----------------l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
+............++.+++. .-.+.++.+||||.+|+ +..+|+.+ ||..+.|.
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV 434 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence 00001111234556666653 23558899999997772 35666665 89999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+|..+|.++..+..+ ..+|+|+|-++.+++..||||++.-
T Consensus 435 GAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~ 475 (500)
T COG1129 435 GAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMR 475 (500)
T ss_pred chHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEE
Confidence 9999999999999999 9999999999999999999999864
No 380
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=5.1e-16 Score=122.83 Aligned_cols=157 Identities=13% Similarity=0.030 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c-ccc-----------c-cccchheeehhhhcc-CCC-Ccc--
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L-QKK-----------I-SVCSFILIRRAYFFK-LPN-LKS-- 80 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~-~~~-----------~-~~~~~~~l~~~~lg~-lp~-l~~-- 80 (183)
+++|+||||||||||+.+|++++.+.+|++...+.. + ... . ..+....-....+.. +.. ...
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 999999999999999999999998887877654321 0 000 0 000000000000000 000 000
Q ss_pred ccc-cccchHHHHHHHHcCCCC--------------cc--------CCCCCCCChhhhhee------cC----chhhc--
Q 036195 81 ICH-EALAFPCLERIYVHGCPS--------------LR--------KLPFSLESGKRNGVL------IG----EEEWW-- 125 (183)
Q Consensus 81 l~~-~~~~~~~l~vLe~l~L~~--------------L~--------~~~~~~LSgGqk~~i------~~----~~~w~-- 125 (183)
+.. ........+.++.+++.. +. +.++.+||+||++++ +. .|+.+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 001 111223456777777731 22 234589999998822 22 36665
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD 177 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (183)
||....|+..+..+..++..+..+ ..+++++||+.+ .++.||++|++.-|
T Consensus 184 DEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~-~~~~~d~i~~~~~~ 234 (247)
T cd03275 184 DEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEE-FFSKADALVGVYRD 234 (247)
T ss_pred ecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHH-HHhhCCeEEEEEec
Confidence 889999999999999988887655 788999999955 57899999999765
No 381
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=4.3e-15 Score=113.91 Aligned_cols=156 Identities=12% Similarity=0.012 Sum_probs=94.5
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----ch
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL----AF 88 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~----~~ 88 (183)
++.+| +.+|+||||||||||+.+|......... ....+......... . .. ...+....+....+.+.. ..
T Consensus 18 ~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~-~~--~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 18 EFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-G-ES--SAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred ecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-C-CC--eEEEEEEEEcCCccCCcCCHHHHH
Confidence 34555 8899999999999999999855433321 11112211110000 0 00 000111111111111111 11
Q ss_pred HHHHHHHHcCCCCccCCCCCCCChhhhh--ee--------cCchhhc---ccccccCcccccccccceeecCcc--cccC
Q 036195 89 PCLERIYVHGCPSLRKLPFSLESGKRNG--VL--------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ--TVIS 153 (183)
Q Consensus 89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i--------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~--~~~~ 153 (183)
...++++. ....+.++.+||+||++ .+ ..+|+.+ ||....|+..+..+..++.....+ ....
T Consensus 92 ~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~ 168 (198)
T cd03276 92 MARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQF 168 (198)
T ss_pred HHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEE
Confidence 23344444 67788899999999998 22 2577776 899999999998888888765433 2457
Q ss_pred CCCCCceeeeeecccceEEEEeeCC
Q 036195 154 IPQPSYTYEATIRPRYELICIDVDD 178 (183)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (183)
|++++|+++.+++. |+|-++-+-|
T Consensus 169 iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 169 IFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEECCcccccccc-cceeEEEecC
Confidence 99999999999987 9988776544
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.51 E-value=3.8e-16 Score=119.85 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=87.0
Q ss_pred ccceecCcc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 10 RYIEDDGVK-IIGLYGVRGVGKSTLIKQLN--------DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 10 ~~l~i~~Ge-~~~liGpNGaGKSTLl~~i~--------gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
-++++.+|+ +++|+||||||||||+|+|+ |+.-|....+ .++++.+.
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------------~~~~~~~~-- 75 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------------SLPVFENI-- 75 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------------cCcCccEE--
Confidence 377899995 89999999999999999999 5544432211 11111111
Q ss_pred ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccc
Q 036195 81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTV 151 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~ 151 (183)
+..++.........+++|+|+++ .+ ..+|.|+ |+...-|+..+..+. .++..+.. ..
T Consensus 76 -------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~ 141 (200)
T cd03280 76 -------------FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RG 141 (200)
T ss_pred -------------EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cC
Confidence 11222233456667899999988 33 4578886 889999988877764 45555443 36
Q ss_pred cCCCCCCceeeeeecccceEEEEe
Q 036195 152 ISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+.++++||+ +...+.+|+++.++
T Consensus 142 ~~vi~~tH~-~~l~~~~d~~~~l~ 164 (200)
T cd03280 142 ALVIATTHY-GELKAYAYKREGVE 164 (200)
T ss_pred CEEEEECCH-HHHHHHHhcCCCeE
Confidence 789999998 56678899988774
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.49 E-value=6.5e-15 Score=123.62 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=118.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-cccccccchheeehhhhccCCCCcc---------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-QKKISVCSFILIRRAYFFKLPNLKS--------- 80 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~~~~~~~~~~l~~~~lg~lp~l~~--------- 80 (183)
||+|.+||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|+++ ... ....+....++++|..+.
T Consensus 278 s~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~----~~~~~r~~G~~~VPedR~~~Glv~~~s 353 (501)
T COG3845 278 SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL----SPRERRRLGLAYVPEDRHGHGLVLDLS 353 (501)
T ss_pred eeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC----CHHHHHhcCCccCChhhccCccccCcc
Confidence 678999999999999999999999999999999999999999986 211 111122233334443210
Q ss_pred --------------ccc-cccc-----hHHHHHHHHcCCC-CccCCCCCCCChhhhh------eecCchhhc---ccccc
Q 036195 81 --------------ICH-EALA-----FPCLERIYVHGCP-SLRKLPFSLESGKRNG------VLIGEEEWW---NQLEW 130 (183)
Q Consensus 81 --------------l~~-~~~~-----~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~ 130 (183)
++. .... .-..++++.++.. .-...|..+||||++| ++..+|+.+ .|..+
T Consensus 354 l~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG 433 (501)
T COG3845 354 LAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433 (501)
T ss_pred HHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcc
Confidence 000 0011 1245677777775 4456778999999776 245666665 78889
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.|..+-+.+...+...+.+ ..+|+.+|.||++++..|||+.++
T Consensus 434 LDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 434 LDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeee
Confidence 9998888888888877777 999999999999999999999876
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.46 E-value=2.9e-14 Score=123.53 Aligned_cols=148 Identities=16% Similarity=0.084 Sum_probs=95.8
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-CccccccccchheeehhhhccCCCCccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-SLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+.++ +|++++||.+-|.||||||||||+|+|+|+-+--+|+|.+-.. ++--......++.-.....-.+|+...
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~--- 483 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP--- 483 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC---
Confidence 4565 4568999999999999999999999999999989999876521 110000000001101111112222211
Q ss_pred cccchHHHHHHHHcCCCCccCCC------CCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195 84 EALAFPCLERIYVHGCPSLRKLP------FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~------~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
...+.+..++|..++++++.++- -..||+||||+ +..+|+|. |..+-.|++.+..++..++.--+
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp 563 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP 563 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC
Confidence 13345678899999998765542 24599999984 37899996 66899999999999988775333
Q ss_pred ccccCCCCCCc
Q 036195 149 QTVISIPQPSY 159 (183)
Q Consensus 149 ~~~~~~~~~~~ 159 (183)
+ ++++-++|
T Consensus 564 ~--~tvISV~H 572 (604)
T COG4178 564 D--ATVISVGH 572 (604)
T ss_pred C--CEEEEecc
Confidence 2 33444444
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=7.1e-14 Score=130.18 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=107.3
Q ss_pred cccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195 7 PHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-- 82 (183)
Q Consensus 7 ~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-- 82 (183)
+.|++++ |++|+.+||+||-|||||+||.+|.|-++..+|+|.+.|. ++|.||...++
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------------------iaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------------------VAYVPQQPWIQNG 596 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------------------EEEeccccHhhCC
Confidence 4677554 9999999999999999999999999999999999999885 23334333222
Q ss_pred --------c-cccchHHHHHHHHcCCCC-ccCC----------CCCCCChhhhhee------cCchhhc---ccccccCc
Q 036195 83 --------H-EALAFPCLERIYVHGCPS-LRKL----------PFSLESGKRNGVL------IGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 --------~-~~~~~~~l~vLe~l~L~~-L~~~----------~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~ 133 (183)
. ........++++.+.|.+ +.-. +.-.||||||++| +.+.+-. |||+=.|.
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 1 122345778888877742 2222 3346999999854 6666664 89998886
Q ss_pred -ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 -ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-.++-|+..+. ..-....+++++|.++ .+..+|++|.++
T Consensus 677 hvg~~if~~ci~--~~L~~KT~ILVTHql~-~L~~ad~Iivl~ 716 (1381)
T KOG0054|consen 677 HVGKHIFEECIR--GLLRGKTVILVTHQLQ-FLPHADQIIVLK 716 (1381)
T ss_pred hhhHHHHHHHHH--hhhcCCEEEEEeCchh-hhhhCCEEEEec
Confidence 67777887772 2222467888999655 478899999886
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.44 E-value=5.9e-14 Score=133.64 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=70.7
Q ss_pred HHHHHHcCCCCc-cCCCCCCCChhhhhee------c---Cchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 91 LERIYVHGCPSL-RKLPFSLESGKRNGVL------I---GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 91 l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~---~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.++++.+++..+ .++++.+|||||+|++ . .+|+.+ ||....|+..+..+..++..+..+ ..+|+++
T Consensus 790 l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiI 868 (1809)
T PRK00635 790 IHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVII 868 (1809)
T ss_pred HHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 356788899887 7999999999999832 2 467776 899999999999999999888655 7889999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
||+++++ +.+|+++.++
T Consensus 869 sHdl~~i-~~aDrVi~L~ 885 (1809)
T PRK00635 869 EHNMHVV-KVADYVLELG 885 (1809)
T ss_pred eCCHHHH-HhCCEEEEEc
Confidence 9999988 8999999985
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.38 E-value=3e-13 Score=123.53 Aligned_cols=82 Identities=10% Similarity=-0.054 Sum_probs=67.3
Q ss_pred HHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch---hhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 91 LERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE---EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 91 l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~---~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
++.++.+++.. ..++++.+|||||+|+ +..++ .+| ||....|+..+..+..+|..+..+ ..+|+++
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIii 889 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVI 889 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 45677778876 4688999999999983 35555 565 899999999999999999887654 7899999
Q ss_pred CceeeeeecccceEEEE
Q 036195 158 SYTYEATIRPRYELICI 174 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (183)
+||++.+ +.+|++|.+
T Consensus 890 tH~~~~i-~~aD~ii~L 905 (943)
T PRK00349 890 EHNLDVI-KTADWIIDL 905 (943)
T ss_pred ecCHHHH-HhCCEEEEe
Confidence 9999986 579999887
No 388
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.36 E-value=3.6e-13 Score=104.39 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=60.8
Q ss_pred CccCCCCCCCChhhhhe--e--------cCchhhc---ccccccCcccccccccceeecCccc-ccCCCCCCceeeeeec
Q 036195 101 SLRKLPFSLESGKRNGV--L--------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT-VISIPQPSYTYEATIR 166 (183)
Q Consensus 101 ~L~~~~~~~LSgGqk~~--i--------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (183)
.+.+..+.+||+||+|. + ..+|.++ ||+...|+..+..+...+.....+. ..+++++||+++.+++
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 45677889999999982 2 2467776 8999999999999988887775542 3579999999999999
Q ss_pred ccceEEEEeeCCC
Q 036195 167 PRYELICIDVDDT 179 (183)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (183)
.+|++.++-+.+.
T Consensus 198 ~~~~~~v~~l~~g 210 (213)
T cd03277 198 YHEKMTVLCVYNG 210 (213)
T ss_pred ccCceEEEEEecC
Confidence 8886655555443
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.33 E-value=5.8e-14 Score=117.16 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=102.4
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-ccc-------chh---------eeehhhhccCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SVC-------SFI---------LIRRAYFFKLP 76 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~~-------~~~---------~l~~~~lg~lp 76 (183)
..+|.++||+||||-||||.+|+|+|-++|.=|+- ++.+-+... ..+ .|. ......+.++|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 58999999999999999999999999999987753 221111100 000 010 00111111112
Q ss_pred CCcc-----cccc-ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe--e----cCchhhc---ccccccCccccccccc
Q 036195 77 NLKS-----ICHE-ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--L----IGEEEWW---NQLEWDDEATKHVFSS 141 (183)
Q Consensus 77 ~l~~-----l~~~-~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~~~~~w~---~~l~~~d~~~~~~~~~ 141 (183)
.... +... ...-...++++.+++.++.++.+++|||||.|+ | ..+.+.. |+-+|.|...+.....
T Consensus 175 k~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar 254 (591)
T COG1245 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254 (591)
T ss_pred HHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH
Confidence 1100 0000 000134678999999999999999999998883 2 4455554 8899999999999998
Q ss_pred ceeecCcccccCCCCCCceeeeeecccceE
Q 036195 142 KLIITTPQTVISIPQPSYTYEATIRPRYEL 171 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
.+..+... ...++++.|||-..--.+|-|
T Consensus 255 ~Irel~~~-~k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 255 VIRELAED-GKYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHHHHhcc-CCeEEEEechHHHHHHhhhee
Confidence 88888876 788999999986544445543
No 390
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.4e-13 Score=110.16 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=94.6
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---- 79 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---- 79 (183)
+|.++.++ |.--..+||+||||.||||||+++.|-+.|+.|+.+-+-+ +.+|++.+..
T Consensus 600 kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----------------L~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 600 KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----------------LRIGWFDQHANEAL 663 (807)
T ss_pred CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----------------eeeechhhhhHHhh
Confidence 45666444 7788899999999999999999999999999998753321 1112111100
Q ss_pred --------cccccc-cc-hHHHHHHHHcCCCCccC-CCCCCCChhhhhee------cCchhhc---ccccccCccccccc
Q 036195 80 --------SICHEA-LA-FPCLERIYVHGCPSLRK-LPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 80 --------~l~~~~-~~-~~~l~vLe~l~L~~L~~-~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
.+...+ .+ ......+-.+|+..-++ ..+..|||||+-++ .+.|+.+ +|.--.|.+.-+.+
T Consensus 664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDAL 743 (807)
T KOG0066|consen 664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL 743 (807)
T ss_pred ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHH
Confidence 000000 01 12345566666654443 46789999999632 4566654 44444444333333
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-.-|+ ++...++|+|||-+.+...--.+|++.
T Consensus 744 aEAIn----ey~GgVi~VsHDeRLi~eT~C~LwVvE 775 (807)
T KOG0066|consen 744 AEAIN----EYNGGVIMVSHDERLIVETDCNLWVVE 775 (807)
T ss_pred HHHHH----hccCcEEEEecccceeeecCceEEEEc
Confidence 33222 667889999999999987777788764
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.6e-13 Score=112.52 Aligned_cols=162 Identities=14% Similarity=0.016 Sum_probs=104.5
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-cc-cchheeehhhhccCCCCcccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SV-CSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~-~~~~~l~~~~lg~lp~l~~l~ 82 (183)
..+. +++++.-+.++++|+||+||||+++++.+-..|.+|.+.+.++.--..- .. ..+.......+.+ ....+
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~---~~~~~ 454 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDF---MEKSF 454 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHH---HHHhC
Confidence 4454 4457778889999999999999999999999999999877654210000 00 0000000000010 01112
Q ss_pred ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 83 HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 83 ~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
+.....++...+..+|++ ++...++.+||||||-++ ..+|.++ ||.---|.++...+..-+. ....
T Consensus 455 pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~----~F~G 530 (582)
T KOG0062|consen 455 PGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK----NFNG 530 (582)
T ss_pred CCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH----hcCC
Confidence 222345678889999996 678888999999999733 3345543 5555555544444433332 3357
Q ss_pred CCCCCCceeeeeecccceEEEEe
Q 036195 153 SIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+|.|+|||.+++-..|+|+|+.+
T Consensus 531 GVv~VSHd~~fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 531 GVVLVSHDEEFISSLCKELWVVE 553 (582)
T ss_pred cEEEEECcHHHHhhcCceeEEEc
Confidence 89999999999999999999865
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.4e-12 Score=118.93 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=67.4
Q ss_pred HHHHHHHcCCCCc-cCCCCCCCChhhhhee------cC---chhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPSL-RKLPFSLESGKRNGVL------IG---EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~---~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.+++++.+++..+ .++++.+|||||+|++ .. +|.++ ||....|+..+..+..++..+..+ ..++++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIv 886 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVV 886 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 3556777888763 6889999999998832 22 35665 889999999999999999887654 789999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
++||++.+ +.+|++|.+.
T Consensus 887 i~H~~~~i-~~aD~ii~Lg 904 (924)
T TIGR00630 887 IEHNLDVI-KTADYIIDLG 904 (924)
T ss_pred EeCCHHHH-HhCCEEEEec
Confidence 99999976 6799998873
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.8e-13 Score=112.43 Aligned_cols=140 Identities=18% Similarity=0.097 Sum_probs=83.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-------CccccccccchheeehhhhccCCCCccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-------SLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-------~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++++..|..+||+|+||+|||||||+|+. |.|..... ++...... .-.......+ +.+...+..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~-l~~D~~~~df--l~~e~~l~~ 170 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV-LESDTERLDF--LAEEKELLA 170 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh-hhccHHHHHH--HHhhhhhhc
Confidence 77899999999999999999999999998 33332211 11000000 0000000000 000000000
Q ss_pred cccchHH-HHHHHHcCCC-CccCCCCCCCChhhhh------eecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195 84 EALAFPC-LERIYVHGCP-SLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI 152 (183)
Q Consensus 84 ~~~~~~~-l~vLe~l~L~-~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~ 152 (183)
.....++ ..++.-+|.. +...+|..+||||.|. +++++|+.+ ||.---|..+..-++.+++... +
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~----~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK----I 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC----c
Confidence 0011222 2266677774 6788999999999764 468899886 6666667666666666665443 6
Q ss_pred CCCCCCceeee
Q 036195 153 SIPQPSYTYEA 163 (183)
Q Consensus 153 ~~~~~~~~~~~ 163 (183)
+++++|||=.+
T Consensus 247 T~liVSHDr~F 257 (582)
T KOG0062|consen 247 TSLIVSHDRNF 257 (582)
T ss_pred eEEEEeccHHH
Confidence 78999999654
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=6.7e-13 Score=122.09 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=101.0
Q ss_pred cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecCcccc-----ccc--------cchhee
Q 036195 5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVSLQKK-----ISV--------CSFILI 67 (183)
Q Consensus 5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~~~~-----~~~--------~~~~~l 67 (183)
++.+|++++ ++||-.+||+|+|||||||||++|+|=.. -.+|+|.++|.+..+. .++ ...++.
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 677889997 99999999999999999999999999753 3589999999865521 011 111222
Q ss_pred ehhhhc-cCCCCccccccccchHHHHHHHHcCCCCccCCCCCC----CChhhhh------eecCchhhc----ccccccC
Q 036195 68 RRAYFF-KLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSL----ESGKRNG------VLIGEEEWW----NQLEWDD 132 (183)
Q Consensus 68 ~~~~lg-~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~----LSgGqk~------~i~~~~~w~----~~l~~~d 132 (183)
+.+... ++.+-..+.......-+.++++.++|+++++.-+.. ||..||+ ++..+|..+ ||.++.|
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 222211 111111111111112367899999998777765555 9999998 358888543 8899999
Q ss_pred cccccccccceee---cCcccccCCCCCCcee
Q 036195 133 EATKHVFSSKLII---TTPQTVISIPQPSYTY 161 (183)
Q Consensus 133 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 161 (183)
..+-..+-.+.+. ..+.-+|+|=|||=++
T Consensus 963 sqaA~~i~~~lrkla~tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 963 SQAAAIVMRFLRKLADTGQTILCTIHQPSIDI 994 (1391)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCcHHH
Confidence 7554444444433 3444566666666554
No 395
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.29 E-value=6.5e-13 Score=110.00 Aligned_cols=165 Identities=19% Similarity=0.121 Sum_probs=104.1
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--------CCCCCcEEEEEecCccccccccchheeehhhhc--
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--------FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-- 73 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--------~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-- 73 (183)
++++++ |++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--..+... .+...+ ..++
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~----iPge~E-p~f~~~ 470 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL----IPGEYE-PEFGEV 470 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhc----cCcccc-cccCch
Confidence 455664 45899999999999999999999999997 479999998743322211 000000 0111
Q ss_pred -cCCCCccccccccchHHHHHHHHcCCCC--ccCCCCCCCChhhhh--e----ecCchhhc--cc-ccccCccccccccc
Q 036195 74 -KLPNLKSICHEALAFPCLERIYVHGCPS--LRKLPFSLESGKRNG--V----LIGEEEWW--NQ-LEWDDEATKHVFSS 141 (183)
Q Consensus 74 -~lp~l~~l~~~~~~~~~l~vLe~l~L~~--L~~~~~~~LSgGqk~--~----i~~~~~w~--~~-l~~~d~~~~~~~~~ 141 (183)
.+.++.+...+ .....+++...|+.+ +..+++++||.||+. . ++..|..| |. -.-.|+.+-..+..
T Consensus 471 tilehl~s~tGD--~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 471 TILEHLRSKTGD--LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred hHHHHHhhccCc--hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 00111111111 123577888888864 788899999999986 2 35555655 33 34445555555666
Q ss_pred ceeecCcccccCCCCCCceeeeeecc-cceEEEEeeC
Q 036195 142 KLIITTPQTVISIPQPSYTYEATIRP-RYELICIDVD 177 (183)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 177 (183)
-|..+.-+..+..++++|+-+..-+. -|.++-+-.+
T Consensus 549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence 66666666677777788887776665 5666655433
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=1e-12 Score=100.33 Aligned_cols=169 Identities=12% Similarity=0.045 Sum_probs=113.8
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccc-------------ccc--chh
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKI-------------SVC--SFI 65 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~-------------~~~--~~~ 65 (183)
++++ |+++.+||+-|++|.+|||||-..|+|+|..+- +.-...|++.++-+.. ..+ +.+
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 4555 567999999999999999999999999999863 3445555554432210 000 000
Q ss_pred eee------hhhhccCCCC---cccccccc--chHHHHHHHHcCCCC---ccCCCCCCCChhhhh------eecCchhhc
Q 036195 66 LIR------RAYFFKLPNL---KSICHEAL--AFPCLERIYVHGCPS---LRKLPFSLESGKRNG------VLIGEEEWW 125 (183)
Q Consensus 66 ~l~------~~~lg~lp~l---~~l~~~~~--~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~------~i~~~~~w~ 125 (183)
.+. ...+...|.. +.+.+.+. ..+..+++..+|+.+ ....++.+|.-||-| .++.+|.++
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence 000 0001111110 11111111 124567788888864 455678899988766 358888887
Q ss_pred ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||.--.|+.++..+..++..+.+....+|+.+|||+.++-.-||++-++=
T Consensus 181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 77888889999999999998888889999999999999999999876553
No 397
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.28 E-value=7.7e-13 Score=101.52 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=33.6
Q ss_pred cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+.++++..|++++|+||||||||||+|+|+|..
T Consensus 13 ~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 13 EKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4567789999999999999999999999999999865
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.26 E-value=6.7e-14 Score=107.50 Aligned_cols=137 Identities=9% Similarity=-0.148 Sum_probs=78.5
Q ss_pred cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCC-CCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
++.+.-++++.+|++++|+||||||||||+++|++.. .+..|..... . ...+++..+..
T Consensus 17 ~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~---------------~~~i~~~dqi~---- 76 (202)
T cd03243 17 ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-E---------------SASIPLVDRIF---- 76 (202)
T ss_pred CceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-c---------------ccccCCcCEEE----
Confidence 4456678899999999999999999999999999543 2333321110 0 01111111110
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccccCC
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTVISI 154 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~ 154 (183)
..++.........+.++.++++ .+ ..+|..+ |+...-|+..+..+. .++..+.. ....+
T Consensus 77 -----------~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~v 144 (202)
T cd03243 77 -----------TRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRT 144 (202)
T ss_pred -----------EEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeE
Confidence 0111111223334555666665 22 3455554 778888886665553 33444433 36789
Q ss_pred CCCCceeeeeecccceEEEE
Q 036195 155 PQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (183)
+++||+.+... .++++..+
T Consensus 145 i~~tH~~~~~~-~~~~~~~l 163 (202)
T cd03243 145 LFATHFHELAD-LPEQVPGV 163 (202)
T ss_pred EEECChHHHHH-HhhcCCCe
Confidence 99999976654 55554443
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.24 E-value=1.2e-12 Score=98.83 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=53.2
Q ss_pred CChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 110 ESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 110 LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
||+||+++ + . ..|.++ |+....|+..+..+.+.+..+..+ .+.++++||+.+.+ +.+|++++|-.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 99999882 1 1 467776 889999999999888888877554 67899999998865 68999999976
Q ss_pred C
Q 036195 177 D 177 (183)
Q Consensus 177 ~ 177 (183)
.
T Consensus 173 ~ 173 (178)
T cd03239 173 V 173 (178)
T ss_pred e
Confidence 3
No 400
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.19 E-value=1.4e-11 Score=104.73 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=64.3
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------ 84 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------ 84 (183)
+|.|++|-.+-|+||||||||+|+|+|.|+-+-..|...+--.+ . .+..|.......|-+.. .-++++
T Consensus 502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~---~--mFYIPQRPYms~gtlRD-QIIYPdS~e~~~ 575 (728)
T KOG0064|consen 502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN---N--IFYIPQRPYMSGGTLRD-QIIYPDSSEQMK 575 (728)
T ss_pred eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc---c--eEeccCCCccCcCcccc-eeecCCcHHHHH
Confidence 45689999999999999999999999999998877766542110 0 11111111111111100 011221
Q ss_pred ---ccchHHHHHHHHcCCCCccCCCC---------CCCChhhhheecCchhhc
Q 036195 85 ---ALAFPCLERIYVHGCPSLRKLPF---------SLESGKRNGVLIGEEEWW 125 (183)
Q Consensus 85 ---~~~~~~l~vLe~l~L~~L~~~~~---------~~LSgGqk~~i~~~~~w~ 125 (183)
..+.+...++..+.+..+.++-. +.||||+||++.+.+-+.
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 12234456667776655544432 569999999775555554
No 401
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.19 E-value=2.8e-11 Score=83.51 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=38.8
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
++|+ +|++++|++++|+||||||||||++++. +|++.+.|.++..
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 4565 4568999999999999999999999986 8999999987653
No 402
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.17 E-value=2.7e-11 Score=102.69 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=43.7
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCccc
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQK 57 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~ 57 (183)
.+++|++ +++++||+++|+|||||||||||+ +|+..|++| +|.++|.++..
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 3466764 568999999999999999999999 788888888 79999987653
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=8.4e-12 Score=100.31 Aligned_cols=72 Identities=10% Similarity=-0.086 Sum_probs=57.1
Q ss_pred CCCCChhhhhe--e----cC----chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195 107 FSLESGKRNGV--L----IG----EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELIC 173 (183)
Q Consensus 107 ~~~LSgGqk~~--i----~~----~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (183)
..+||+||+++ + .. .|.++ ||...-|+..+..+...+..... ...++++||+.+ +++.+|++++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~-~~~~~d~~~~ 244 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ-VAAMADNHFL 244 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH-HHHhcCcEEE
Confidence 33599999882 2 12 78887 88999999999999888876643 478999999998 5789999999
Q ss_pred EeeCCCCC
Q 036195 174 IDVDDTGH 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
++-..-|+
T Consensus 245 l~~~~~~~ 252 (276)
T cd03241 245 VEKEVEGG 252 (276)
T ss_pred EEEecCCC
Confidence 99776654
No 404
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.15 E-value=2.1e-11 Score=104.42 Aligned_cols=166 Identities=14% Similarity=0.026 Sum_probs=96.0
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc--
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-- 83 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-- 83 (183)
+++ ||+|.+|+.+-|.||||||||+|+|+++||-+..+|++..-.....+ ..+..|..-...+|-+.+.- +++
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~--~lfflPQrPYmt~GTLRdQv-IYP~~ 526 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPK--DLFFLPQRPYMTLGTLRDQV-IYPLK 526 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCC--ceEEecCCCCccccchhhee-eccCc
Confidence 445 45699999999999999999999999999998899999764432111 01111222222222222111 111
Q ss_pred -------cccchHHHHHHHHcCCCCccCC-----------CCCCCChhhhheecCchhhc---------ccccccCcccc
Q 036195 84 -------EALAFPCLERIYVHGCPSLRKL-----------PFSLESGKRNGVLIGEEEWW---------NQLEWDDEATK 136 (183)
Q Consensus 84 -------~~~~~~~l~vLe~l~L~~L~~~-----------~~~~LSgGqk~~i~~~~~w~---------~~l~~~d~~~~ 136 (183)
...+...++.++++.+.++..+ -.+.||+||+|+++..+-+. |-..-.+++..
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 1224467788888888654332 23569999999664444443 33444555666
Q ss_pred cccccceeecCcccccC-----CCCCCceeeeee--cccceEEEEeeC
Q 036195 137 HVFSSKLIITTPQTVIS-----IPQPSYTYEATI--RPRYELICIDVD 177 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (183)
..++..+...... .++ -+---||+..=| +-+.++==||.+
T Consensus 607 ~~~Yr~~r~~giT-~iSVgHRkSL~kfHd~~L~~~g~g~w~~~~I~~q 653 (659)
T KOG0060|consen 607 GALYRKCREMGIT-FISVGHRKSLWKFHDYVLRMDGRGSWRFHQIDDQ 653 (659)
T ss_pred HHHHHHHHHcCCe-EEEeccHHHHHhhhhEEEEecCCCceEEEEechh
Confidence 6777666554443 111 122246666555 334444444443
No 405
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.14 E-value=1.1e-11 Score=99.16 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
..++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 578999999999999999999999999999999998775
No 406
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.13 E-value=8e-12 Score=106.19 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=101.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE--ecCccccc--c---ccchheeehhhhccCCC-Ccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY--AVSLQKKI--S---VCSFILIRRAYFFKLPN-LKSIC 82 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~--g~~~~~~~--~---~~~~~~l~~~~lg~lp~-l~~l~ 82 (183)
.|++.+|+.+||+|+|||||||+|++|+|-..|..-++-+. .+++.... . ...+..-....+.++.. +...+
T Consensus 95 ~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~ 174 (614)
T KOG0927|consen 95 TLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQAC 174 (614)
T ss_pred eEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhc
Confidence 56789999999999999999999999999998877666442 22211100 0 00000000011111100 00000
Q ss_pred c-----------------cccch--HHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 83 H-----------------EALAF--PCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 83 ~-----------------~~~~~--~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
. +...+ ++..++.-+ ..+.+..++...+|||++++ ++-+|.++ ||.-.-|.
T Consensus 175 d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDl 254 (614)
T KOG0927|consen 175 DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDL 254 (614)
T ss_pred cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCH
Confidence 0 00011 122223322 33578888999999999873 47777775 88888898
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
++..-++.++.... ...+.++||+-.+.=..|-.+||++-
T Consensus 255 eA~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 255 EAIVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecc
Confidence 88888887765322 22677889999888899999999874
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.06 E-value=1.1e-11 Score=92.10 Aligned_cols=129 Identities=11% Similarity=-0.008 Sum_probs=84.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhcc-CCCCccccccccchH
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFK-LPNLKSICHEALAFP 89 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~-lp~l~~l~~~~~~~~ 89 (183)
++.+.++.+..|+|||||||||+++.+....-...|.+..... .+ .+. .+... ..+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-~~---------------~g~~~~~~~------~~~- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-VK---------------AGCIVAAVS------AEL- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-cc---------------CCCcceeeE------EEE-
Confidence 3344556699999999999999999988887666665544211 10 000 00000 000
Q ss_pred HHHHHHHcCCCCccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPSLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
-.....+|+||+++ + . .+|.++ |+...-|+..+..+...+.....+ .+.+++
T Consensus 72 --------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii 136 (162)
T cd03227 72 --------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIV 136 (162)
T ss_pred --------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 00012299998872 1 2 156665 778888988888887777655445 678999
Q ss_pred CCceeeeeecccceEEEEeeCC
Q 036195 157 PSYTYEATIRPRYELICIDVDD 178 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ 178 (183)
+||+.+.+. .+|+++.+..-.
T Consensus 137 ~TH~~~~~~-~~d~~~~l~~~~ 157 (162)
T cd03227 137 ITHLPELAE-LADKLIHIKKVI 157 (162)
T ss_pred EcCCHHHHH-hhhhEEEEEEEe
Confidence 999999875 589999887643
No 408
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.01 E-value=1.5e-10 Score=88.29 Aligned_cols=154 Identities=15% Similarity=0.004 Sum_probs=90.8
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhh---------ccC
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYF---------FKL 75 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~l---------g~l 75 (183)
|++. +++++.|...-++|.||||||||||+++|-.-.-.|.|.+.|.+.-..........+.++.- +.+
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agev 107 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEV 107 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccc
Confidence 5554 44589999999999999999999999999877777999999876432111100011110000 001
Q ss_pred CCCc------cccc--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhee---cCchhh-----ccccccc-Ccccccc
Q 036195 76 PNLK------SICH--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL---IGEEEW-----WNQLEWD-DEATKHV 138 (183)
Q Consensus 76 p~l~------~l~~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i---~~~~~w-----~~~l~~~-d~~~~~~ 138 (183)
|-.. .++. ....++-..+++.+++.- .-+.+.+|-||+|++ +|-..= ++++.-+ |.-++..
T Consensus 108 plq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl--~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARad 185 (291)
T KOG2355|consen 108 PLQGDISAEHMIFGVGGDDPERREKLIDILDIDL--RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185 (291)
T ss_pred cccccccHHHHHhhccCCChhHhhhhhhheeccc--eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHH
Confidence 1000 0110 001123455566666542 345678999999954 221111 2444332 4566777
Q ss_pred cccceeecCcccccCCCCCCceee
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYE 162 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~ 162 (183)
+..+++.--.|..++|.-.+|=+.
T Consensus 186 LLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 186 LLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred HHHHHHHHHhhcCcEEEEEeeecc
Confidence 777777777788888887777654
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.01 E-value=2.7e-10 Score=86.40 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+.+++|+.++|+||||||||||+++|+++++|+.|.|.+.+.
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 348899999999999999999999999999999999998653
No 410
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.00 E-value=4.5e-11 Score=99.45 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=95.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EE-----EEEecCccccccccchheeehhhhccCCCCccccccccchH
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KF-----AIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFP 89 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I-----~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~ 89 (183)
.-|++..+|.||.||||++++++|.++|+.| +| .+.-+.+..+ +....+..+.. ..+.- .....-
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK-----~~~tvR~ll~~--kIr~a--y~~pqF 436 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPK-----REGTVRQLLHT--KIRDA--YMHPQF 436 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCcc-----ccchHHHHHHH--HhHhh--hcCHHH
Confidence 3467889999999999999999999999886 22 2222211110 00000000000 00000 011112
Q ss_pred HHHHHHHcCCCCccCCCCCCCChhhhhee-----cCchhhc----ccccccCcccccccccceeecCcccccCCCCCCce
Q 036195 90 CLERIYVHGCPSLRKLPFSLESGKRNGVL-----IGEEEWW----NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 90 ~l~vLe~l~L~~L~~~~~~~LSgGqk~~i-----~~~~~w~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
.-++++-+.++.+.++.+..||||+.|++ .|.|.=. |+-...|-+.+......+.-.....--+-.++.||
T Consensus 437 ~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhd 516 (592)
T KOG0063|consen 437 VNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD 516 (592)
T ss_pred HHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhH
Confidence 35677888888999999999999998843 5555432 56666666666555555554444555667888999
Q ss_pred eeeeecccceEEEEee
Q 036195 161 YEATIRPRYELICIDV 176 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~~ 176 (183)
+=+.-=.+||||..|-
T Consensus 517 fImaTYladrvivf~G 532 (592)
T KOG0063|consen 517 FIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHhhcceeEEEec
Confidence 8777778999999874
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.99 E-value=1e-11 Score=96.81 Aligned_cols=133 Identities=12% Similarity=-0.084 Sum_probs=77.0
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cCCCCcccc
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KLPNLKSIC 82 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~lp~l~~l~ 82 (183)
+.+..+++ ..+++++.|.||||+||||++++++-. .+ ...++ ++|.....
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~------------------la~~g~~vpa~~~~- 69 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL------------------MAQIGCFVPCDSAD- 69 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH------------------HHHhCCCcCcccEE-
Confidence 34555555 468999999999999999999999821 00 01112 22211100
Q ss_pred ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh-----e-e--cCchhhc---cc---ccccCcccccccccceeecCc
Q 036195 83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-----V-L--IGEEEWW---NQ---LEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-----~-i--~~~~~w~---~~---l~~~d~~~~~~~~~~~~~~~~ 148 (183)
.....+++..+++.+.. ...+|.|+++ . + ..++..+ |+ ....|+...... ++..+..
T Consensus 70 ----~~~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~ 140 (222)
T cd03285 70 ----IPIVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIAT 140 (222)
T ss_pred ----EeccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHh
Confidence 11123344455555333 4556666543 1 2 4567765 56 566776555322 2222222
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+.++++|| ++++.+.||++++++
T Consensus 141 ~~~~~vlisTH-~~el~~~~~~~~~i~ 166 (222)
T cd03285 141 QIKCFCLFATH-FHELTALADEVPNVK 166 (222)
T ss_pred cCCCeEEEEec-hHHHHHHhhcCCCeE
Confidence 33577899999 588889999888764
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.91 E-value=4.7e-11 Score=91.94 Aligned_cols=129 Identities=10% Similarity=-0.112 Sum_probs=73.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccC-CCCcccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKL-PNLKSIC 82 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~l-p~l~~l~ 82 (183)
+.+..++ ++.+|++++|+||||+||||++++++++.-- ..+|.. |...
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------------a~~G~~vpa~~--- 66 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------------AQIGCFVPAEY--- 66 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------------HHcCCCcchhh---
Confidence 4555555 4678899999999999999999999988410 001100 1000
Q ss_pred ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e---ecCchhhc---ccccccCccc-ccccccceeecCcccccC
Q 036195 83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V---LIGEEEWW---NQLEWDDEAT-KHVFSSKLIITTPQTVIS 153 (183)
Q Consensus 83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~---i~~~~~w~---~~l~~~d~~~-~~~~~~~~~~~~~~~~~~ 153 (183)
.. .....+++..++..+-.....+++|.|+++ . .+.++..+ |+...-|+.. .......+..+... ...
T Consensus 67 ~~--l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~ 143 (204)
T cd03282 67 AT--LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-EST 143 (204)
T ss_pred cC--ccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCE
Confidence 00 001123334444444455667788888877 2 24455553 4444444422 22222333333333 778
Q ss_pred CCCCCceeeeeec
Q 036195 154 IPQPSYTYEATIR 166 (183)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (183)
++++||+.+.+-.
T Consensus 144 ~i~~TH~~~l~~~ 156 (204)
T cd03282 144 VFFATHFRDIAAI 156 (204)
T ss_pred EEEECChHHHHHH
Confidence 9999999887654
No 413
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.84 E-value=5.1e-09 Score=81.95 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=32.0
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA 49 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 49 (183)
.+..++||.||||||||||++.|++++++.+|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~ 65 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA 65 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence 56779999999999999999999999999999843
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.83 E-value=2.9e-11 Score=91.71 Aligned_cols=119 Identities=11% Similarity=-0.090 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHHHHHc
Q 036195 19 IIGLYGVRGVGKSTLIKQLN-DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVH 97 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l 97 (183)
++.|.||||+||||++|.++ ..+-+..|....... ..++++ .+++..+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~----------------~~~~~~---------------d~il~~~ 49 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES----------------AELPVF---------------DRIFTRI 49 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh----------------eEeccc---------------ceEEEEe
Confidence 36799999999999999998 333344443221110 111111 1112233
Q ss_pred CCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccc-cccceeecCcccccCCCCCCceeeeeeccc
Q 036195 98 GCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHV-FSSKLIITTPQTVISIPQPSYTYEATIRPR 168 (183)
Q Consensus 98 ~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (183)
++.+....+.+++|+++++ .+ +.+|..| |+...-|+..... +..++..+..+..+.++++||+.+ ..+.+
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~ 128 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLA 128 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHh
Confidence 3445556778889998887 22 2366655 7788888764444 344555444434678999999986 44555
Q ss_pred c
Q 036195 169 Y 169 (183)
Q Consensus 169 ~ 169 (183)
+
T Consensus 129 ~ 129 (185)
T smart00534 129 D 129 (185)
T ss_pred h
Confidence 5
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.5e-09 Score=90.95 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=92.7
Q ss_pred ccceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCcccccc-----ccc-----hheee--hhhhccC
Q 036195 10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKIS-----VCS-----FILIR--RAYFFKL 75 (183)
Q Consensus 10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~-----~~~-----~~~l~--~~~lg~l 75 (183)
.+|.|-.|..+|++||||-||||||+.|+.-- -|..=.|.+-.+.+..... ... ...++ ....+.+
T Consensus 283 A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~ 362 (807)
T KOG0066|consen 283 ASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQI 362 (807)
T ss_pred cceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 37788999999999999999999999998642 2333334443333221000 000 00000 0000000
Q ss_pred ---------------CCCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195 76 ---------------PNLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEW 130 (183)
Q Consensus 76 ---------------p~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~ 130 (183)
..++.+-......+...++.-+|.+ .+.++|...+|||.+.+| +.+|-++ +|.--
T Consensus 363 e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNH 442 (807)
T KOG0066|consen 363 EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNH 442 (807)
T ss_pred HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccc
Confidence 0011111122233455667777765 578899999999988643 4444443 33333
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
.|-++..-+..++... -.+.+|+|||--+.-..|..+|-+|-
T Consensus 443 LDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 443 LDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred cccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh
Confidence 3334443344444433 34578899999999999999998874
No 416
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.75 E-value=8.8e-09 Score=64.02 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=30.2
Q ss_pred ccceecC-ccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195 10 RYIEDDG-VKIIGLYGVRGVGKSTLIKQLNDMFSDMS 45 (183)
Q Consensus 10 ~~l~i~~-Ge~~~liGpNGaGKSTLl~~i~gl~~p~~ 45 (183)
+.+++.+ |+++.|.|||||||||++.+|.-++.|..
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4566765 57999999999999999999988877655
No 417
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.71 E-value=1.3e-08 Score=76.70 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=31.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
+||+++|+|+|||||||++++|++++.+ +.++|.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 6999999999999999999999999887 56777654
No 418
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=1.5e-08 Score=86.06 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=40.5
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
++++.+ .+.+|++++|+||||+|||||+++|+++.+|+.|.|.+.|
T Consensus 154 ~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG 200 (450)
T PRK06002 154 RVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG 200 (450)
T ss_pred EEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence 345544 4999999999999999999999999999999999888865
No 419
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.67 E-value=2.5e-08 Score=75.58 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=30.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
|++++|+||||||||||+++|++...| .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence 789999999999999999999999876 4666555443
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.67 E-value=1.7e-08 Score=77.77 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=27.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
++|+++||+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999876
No 421
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.65 E-value=2e-08 Score=96.72 Aligned_cols=85 Identities=13% Similarity=-0.053 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCCc-cCCCCCCCChhhhhee-----cCc----hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPSL-RKLPFSLESGKRNGVL-----IGE----EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i-----~~~----~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.++.|..+||.-+ ..+|..+|||||.|+| .+. +..+ ||..+-++.-...+...|..+... .-++++
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tviv 1757 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIY 1757 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEE
Confidence 4667888898866 6789999999998843 222 2233 778888887788888888877755 899999
Q ss_pred CCceeeeeecccceEEEEeeCC
Q 036195 157 PSYTYEATIRPRYELICIDVDD 178 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ 178 (183)
++||++.+-+ +|.+| |+-.
T Consensus 1758 ieH~~~~i~~-aD~ii--dlgp 1776 (1809)
T PRK00635 1758 IDHDPALLKQ-ADYLI--EMGP 1776 (1809)
T ss_pred EeCCHHHHHh-CCEEE--EcCC
Confidence 9999986555 99765 5543
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.64 E-value=2.3e-08 Score=76.56 Aligned_cols=28 Identities=39% Similarity=0.391 Sum_probs=26.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
++|++++|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999974
No 423
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.64 E-value=2.4e-08 Score=80.74 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=34.0
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVS 54 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~ 54 (183)
+.-.++||.||||||||||+++|.+++. |++|.|.+-+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 3446999999999999999999999997 788988775544
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.61 E-value=2.2e-09 Score=97.04 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=73.2
Q ss_pred cceecCc-cEEEEEcCCCCcHHHHHHHHhcC-CCCCCc-EEEEEecCccccccccchheeehhhhccCCCCccccccccc
Q 036195 11 YIEDDGV-KIIGLYGVRGVGKSTLIKQLNDM-FSDMSH-KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALA 87 (183)
Q Consensus 11 ~l~i~~G-e~~~liGpNGaGKSTLl~~i~gl-~~p~~G-~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~ 87 (183)
++++.++ ++++|+||||+|||||||+|+|. +.+..| .|..... ..++++.+.. ..
T Consensus 315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~----------------~~~~~~d~i~---~~--- 372 (771)
T TIGR01069 315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH----------------SEIPYFEEIF---AD--- 372 (771)
T ss_pred eeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc----------------ccccchhhee---ee---
Confidence 6667777 89999999999999999999998 556666 2211100 0111111111 00
Q ss_pred hHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCccccccc-ccceeecCcccccCCCCCC
Q 036195 88 FPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVF-SSKLIITTPQTVISIPQPS 158 (183)
Q Consensus 88 ~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (183)
++...-....++++|+++++ .+ +.++..+ |+...-|+.....+ ..++..+.. ..+.++++|
T Consensus 373 ---------i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitT 442 (771)
T TIGR01069 373 ---------IGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITT 442 (771)
T ss_pred ---------cChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEC
Confidence 01011122346778898887 33 2345554 66778887777666 345555443 367889999
Q ss_pred ceeee
Q 036195 159 YTYEA 163 (183)
Q Consensus 159 ~~~~~ 163 (183)
|+.+.
T Consensus 443 H~~eL 447 (771)
T TIGR01069 443 HYKEL 447 (771)
T ss_pred ChHHH
Confidence 98765
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=6.5e-08 Score=82.32 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=42.9
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
++++.+ .+.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|++-
T Consensus 147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 345544 6899999999999999999999999999999999999977654
No 426
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.58 E-value=1.3e-07 Score=72.26 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
++||+||||||||||.+.|++++ ..|.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~ 33 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe
Confidence 58999999999999999999998 3455555444
No 427
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.57 E-value=5.4e-08 Score=79.47 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=37.3
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
+.+..|+.++|+||+|||||||+++|+++++|..|.+.+.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 35788999999999999999999999999999999888864
No 428
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.56 E-value=1.1e-07 Score=77.88 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=40.7
Q ss_pred ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
+++.+ .+.+|++++|+|+||+|||||+++|++...|+.|.+..-|++
T Consensus 59 aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 59 AIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 45444 589999999999999999999999999999999888776643
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.54 E-value=6.5e-08 Score=79.28 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=38.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.+|++++++||||+||||++..|++.+.+..++|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 478999999999999999999999999998899999887764
No 430
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.53 E-value=1.1e-07 Score=80.35 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=40.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++.+.+|+.++|+|+||+|||||+++|++..+|+.|.|...|+.
T Consensus 134 ~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 134 FLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred eccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 56799999999999999999999999999999999988887764
No 431
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=1.2e-07 Score=80.48 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.0
Q ss_pred ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195 8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF 48 (183)
Q Consensus 8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I 48 (183)
+++.+ ++.+|++++|+|+||+|||||+++|+|+.+|+.+.+
T Consensus 145 aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vi 186 (434)
T PRK07196 145 AINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVV 186 (434)
T ss_pred eccceEeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEE
Confidence 44444 689999999999999999999999999998886433
No 432
>PRK08149 ATP synthase SpaL; Validated
Probab=98.48 E-value=1.3e-07 Score=80.01 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=42.2
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCcc
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQ 56 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~ 56 (183)
++++.+ .+.+||+++|+|+||+|||||+++|++...++. |.|...++++.
T Consensus 140 ~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 140 RAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVT 193 (428)
T ss_pred EEEeeeeeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHH
Confidence 345544 589999999999999999999999999998887 77777777654
No 433
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.47 E-value=1.6e-07 Score=79.58 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=41.7
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++.+ ++.+|+.++|+|+||+|||||+++|+++.+++.|.+.+.|+.
T Consensus 144 ~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 455554 589999999999999999999999999999999888776653
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.8e-07 Score=83.43 Aligned_cols=87 Identities=13% Similarity=-0.009 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCCc-cCCCCCCCChhhhheecCchhh----------c--ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPSL-RKLPFSLESGKRNGVLIGEEEW----------W--NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i~~~~~w----------~--~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.++.|..+||.-+ ..+|..+|||||-|+|.=..|+ + ||..+...+-...+...+..+..+ .-++++
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViV 880 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIV 880 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 3555666787754 6789999999998854222222 1 555555444444555555555555 889999
Q ss_pred CCceeeeeecccceEEEEeeCCCC
Q 036195 157 PSYTYEATIRPRYELICIDVDDTG 180 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (183)
+.|||+ |++.+|.+ ||+-..|
T Consensus 881 IEHNLd-VIk~AD~I--IDLGPeG 901 (935)
T COG0178 881 IEHNLD-VIKTADWI--IDLGPEG 901 (935)
T ss_pred Eecccc-eEeecCEE--EEcCCCC
Confidence 999998 56788865 5665444
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.46 E-value=1.8e-07 Score=70.19 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY 51 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~ 51 (183)
|++++|+|||||||||+++.|++.+.+. |.+.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~ 34 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFV 34 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEe
Confidence 6789999999999999999999987654 655553
No 436
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=6.2e-07 Score=83.66 Aligned_cols=113 Identities=16% Similarity=0.066 Sum_probs=70.0
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCcccccc-------------ccchhee
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQKKIS-------------VCSFILI 67 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~~~~~-------------~~~~~~l 67 (183)
..++++++ +++|+.+-++||.|||||||+++++|-..- ..|+|.++|.+...-.. ....++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 46788776 899999999999999999999999998743 35699999987553110 0111222
Q ss_pred ehhhhccCCC-CccccccccchH-----HHHHHHHcCCCCccCCC-----CCCCChhhhhee
Q 036195 68 RRAYFFKLPN-LKSICHEALAFP-----CLERIYVHGCPSLRKLP-----FSLESGKRNGVL 118 (183)
Q Consensus 68 ~~~~lg~lp~-l~~l~~~~~~~~-----~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~i 118 (183)
+.+....--+ .+.-+.+....+ ...+++.+|+..-++.. .+-.|||||+++
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRv 269 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRV 269 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCccccee
Confidence 2222111000 000111111112 34678889997665554 456899999854
No 437
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=1.4e-07 Score=80.06 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred cccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCcc
Q 036195 8 HLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQ 56 (183)
Q Consensus 8 ~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~ 56 (183)
+++. +++.+|++++|+|+||+|||||+++|+++.+|+. |.|.+.|.++.
T Consensus 165 aID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 165 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK 217 (455)
T ss_pred eeeecccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHH
Confidence 3443 4689999999999999999999999999999985 88888887664
No 438
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.45 E-value=1.3e-07 Score=73.76 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAI 50 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~ 50 (183)
++||.||||||||||++.|++++.+ .++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999975 5566665
No 439
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.44 E-value=3.1e-07 Score=78.13 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=41.9
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++.+ .+.+|++++|+|+||+|||||+++|++...++.|.+.+.|+.
T Consensus 152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 345544 589999999999999999999999999999999998888754
No 440
>PRK01889 GTPase RsgA; Reviewed
Probab=98.43 E-value=1.8e-07 Score=77.82 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=37.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+.+|++++|+|+||+|||||++.|+|...+..|+|.+++.
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~ 231 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS 231 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence 6789999999999999999999999999999999998764
No 441
>PRK05922 type III secretion system ATPase; Validated
Probab=98.43 E-value=3.5e-07 Score=77.55 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=39.7
Q ss_pred cccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 8 HLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 8 ~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+++. +.+.+|+.++|+|+||+|||||+++|++..+++.|.+..-|.
T Consensus 147 ~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 147 AIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 4443 469999999999999999999999999999999998866554
No 442
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.42 E-value=3.4e-07 Score=78.04 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=41.1
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++.+ .+.+|+.++|+|+||+|||||+++|++..+|+.|.+...|+.
T Consensus 152 ~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 152 RSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 455544 589999999999999999999999999999999877776654
No 443
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.41 E-value=3.4e-07 Score=77.70 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=41.2
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++.+ .+.+|+.++|+|+||+|||||+++|++..+|+.|.+..-|..
T Consensus 134 ~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 134 RAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred eeehhhccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 345544 589999999999999999999999999999999988876553
No 444
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.41 E-value=2.1e-07 Score=74.79 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY 51 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~ 51 (183)
++||.|+||||||||++.|++++++..|.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEEC
Confidence 589999999999999999999999887765543
No 445
>PLN02796 D-glycerate 3-kinase
Probab=98.41 E-value=2.2e-07 Score=76.53 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=35.6
Q ss_pred cCccE-----EEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcc
Q 036195 15 DGVKI-----IGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQ 56 (183)
Q Consensus 15 ~~Ge~-----~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~ 56 (183)
++|+. +||.|++|||||||++.|.+++++. .|.|.++|..+.
T Consensus 93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 46666 9999999999999999999999875 688888887543
No 446
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.40 E-value=3.1e-07 Score=87.81 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=37.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
.|++.+| +++|+|+|||||||+|++|++++.|..|.+.|++.+
T Consensus 22 ~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 22 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred EEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 3456665 999999999999999999999999999999888654
No 447
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.38 E-value=2e-07 Score=72.67 Aligned_cols=45 Identities=20% Similarity=0.048 Sum_probs=36.6
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEEE
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLND-MFSDMSHKFAIY 51 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~ 51 (183)
.+..++ ++.+|++++|+||||+||||+++++++ .+.++.|.....
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 344444 467899999999999999999999999 667888876543
No 448
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.38 E-value=4.6e-07 Score=78.36 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=40.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
+.+..|+.++|+||||+|||||++.|.|+++|.+|++.++...+.
T Consensus 205 laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 205 ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 457889999999999999999999999999999999998876543
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.38 E-value=1.5e-07 Score=80.88 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=31.3
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK 47 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~ 47 (183)
.+.+|++++++||||+||||++..|++.+.+..|.
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999998777664
No 450
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.36 E-value=6.4e-07 Score=75.81 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
++++.+ .+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus 126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 445544 5899999999999999999999999999999999888877654
No 451
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.35 E-value=7.1e-07 Score=75.47 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++. +.+.+|++++|+|+||+|||||+++|++..+|+.+.+..-|+.
T Consensus 126 ~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 126 RAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred EeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 44544 4699999999999999999999999999999998877666653
No 452
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=6.8e-07 Score=75.85 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=41.4
Q ss_pred ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
+++ .+.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+.
T Consensus 146 aID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 146 SIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred EEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 444 35699999999999999999999999999999999998877654
No 453
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.32 E-value=6.4e-07 Score=66.28 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----EEEEEec
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM----FSDMSH----KFAIYAV 53 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl----~~p~~G----~I~~~g~ 53 (183)
-.++|+|+||||||||++.+.|. ..|+.| .+.+++.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF 58 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence 45899999999999999999997 568888 5655544
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.31 E-value=5.3e-07 Score=67.59 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
|++++|+||||||||||++.|++...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999763
No 455
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.30 E-value=5.7e-07 Score=72.78 Aligned_cols=34 Identities=35% Similarity=0.304 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
+++++++|+||+|||||++.|.|...++.|+|..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 5899999999999999999999999999999875
No 456
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.30 E-value=6e-07 Score=68.68 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=36.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCcc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSLQ 56 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~ 56 (183)
-.+|++++|+|+|||||||+.+.|++.+.+. .|.+.+++.++.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3689999999999999999999999987654 467888876654
No 457
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=7.6e-07 Score=72.42 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
+|.+++++|+||+|||||++.|.|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58999999999999999999999999999999986
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.29 E-value=8.8e-07 Score=68.17 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=29.7
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
.++.+++|.|+||||||||.+.|++.+. .+.+.+-..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~ 40 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQ 40 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeC
Confidence 5788999999999999999999999983 344544333
No 459
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=5.7e-07 Score=76.59 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=33.1
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
++++.+ .+.+|+.++|+|+||+|||||+++|+|+..|+
T Consensus 157 ~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 157 RSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeecceEEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345444 68999999999999999999999999998775
No 460
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=5.3e-07 Score=69.91 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=31.2
Q ss_pred cccceecCc--cEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEE
Q 036195 9 LRYIEDDGV--KIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFAI 50 (183)
Q Consensus 9 l~~l~i~~G--e~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~ 50 (183)
=.++.+.++ .++.|+||||+|||||||.++. ++ +..|....
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~ 63 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP 63 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE
Confidence 346677766 7899999999999999999983 33 55665443
No 461
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.28 E-value=6.1e-07 Score=69.70 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=27.8
Q ss_pred cccccceecCc-cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 7 PHLRYIEDDGV-KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 7 ~~l~~l~i~~G-e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+..++++..+ ++++|+||||+||||++|+++++.
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 35566665433 899999999999999999998753
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=9.7e-07 Score=70.00 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=36.7
Q ss_pred cccccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195 5 YRPHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH 46 (183)
Q Consensus 5 ~~~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G 46 (183)
.++++|.| .+.+|+.++|+||+|+|||||++.|+.......+
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence 45678888 5999999999999999999999999999876543
No 463
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=7.7e-07 Score=85.16 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCcHHHHHHHH----hcCCCCC-CcEEEEEecCc
Q 036195 18 KIIGLYGVRGVGKSTLIKQL----NDMFSDM-SHKFAIYAVSL 55 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i----~gl~~p~-~G~I~~~g~~~ 55 (183)
.+++|+|||||||||++.+| .|..+|. .|.+.+.+..+
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~ 71 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV 71 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence 49999999999999999999 4999885 78888876544
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=6.9e-07 Score=75.63 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=25.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.+|++++++||||+||||+++.|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999985
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=7.5e-07 Score=80.07 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=35.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVS 54 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~ 54 (183)
+.+++|++++++||||+||||++..|++.+....| +|.+-..|
T Consensus 180 ~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 180 ALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred cccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 34678999999999999999999999999876766 56665444
No 466
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=1.5e-06 Score=73.88 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=41.2
Q ss_pred ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
+++.+ ++.+|++++|+|+||+|||||+++|++...++.+.|...|+..
T Consensus 147 aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 147 SIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred HhhhcceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 45544 5899999999999999999999999999988888887777653
No 467
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.24 E-value=8.7e-07 Score=74.62 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSL 55 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~ 55 (183)
=++||.|++|||||||.+.|.+++++. .|.|.++|..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 589999999999999999999999876 78888888654
No 468
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.23 E-value=9.1e-07 Score=67.60 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY 51 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~ 51 (183)
++|+|+||+|||||+++|.|...+++|.+...
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 78999999999999999999988888877665
No 469
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=1.1e-06 Score=74.46 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=32.3
Q ss_pred ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
+++ .+.+.+|+.++|+|+||+|||||+++|++...++
T Consensus 152 aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 152 AINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred eecceEEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 444 3469999999999999999999999999988774
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.23 E-value=1.2e-06 Score=76.67 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
-++||.||||||||||++.|++++ |..|.|.++|..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence 489999999999999999999997 678999998864
No 471
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.21 E-value=1.2e-07 Score=79.39 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=82.4
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc-------chhee--ehh-------hhccCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC-------SFILI--RRA-------YFFKLPN 77 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~-------~~~~l--~~~-------~lg~lp~ 77 (183)
-.+|++.|++|.||-||||-+++++|-.+|.-|.-. .+.+.++....+ .|+.. ..+ .+..+|+
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 479999999999999999999999999999877531 111111100000 00000 000 0000000
Q ss_pred Cc-----c-ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee----cCchhhc---ccccccCcccccccccc
Q 036195 78 LK-----S-ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL----IGEEEWW---NQLEWDDEATKHVFSSK 142 (183)
Q Consensus 78 l~-----~-l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i----~~~~~w~---~~l~~~d~~~~~~~~~~ 142 (183)
.. . +..........++++.+.+..+.++....||||+.| ++ .++.+-. |+-...|...+......
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 00 0 000000112356677788888999999999999766 33 2222221 34444443333333322
Q ss_pred eeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 143 LIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
|..+.. ...-|.++.|||...-=.+|-+-|+
T Consensus 256 IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 256 IRSLIN-PDRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred HHHhhC-CCCeEEEEEeechHHHhhhcceeEE
Confidence 322222 2455666778776544445544443
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.20 E-value=6.8e-07 Score=67.23 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFAI 50 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~ 50 (183)
..+++|+||+||||||+.+.|+ |+..++.|++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4689999999999999999999 888888887643
No 473
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.19 E-value=1.7e-06 Score=65.17 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=33.7
Q ss_pred ccccce--ecCccEEEEEcCCCCcHHHHHHHHhc--------CCCCCCcEEEEEecC
Q 036195 8 HLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLND--------MFSDMSHKFAIYAVS 54 (183)
Q Consensus 8 ~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~g--------l~~p~~G~I~~~g~~ 54 (183)
+|+++. .+++++ +|+|++|||||||++.+.+ ...|+.+++.+++.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence 455554 445544 9999999999999999998 345666777776543
No 474
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.19 E-value=1.8e-06 Score=73.49 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=36.3
Q ss_pred ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEe
Q 036195 8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYA 52 (183)
Q Consensus 8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g 52 (183)
+++ .+.+.+|+.++|+|+||+|||||+++|+++.++ +.|.|.+.|
T Consensus 154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEeccccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 444 346999999999999999999999999999854 446666644
No 475
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.18 E-value=1.4e-06 Score=65.17 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=33.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE-Eec
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI-YAV 53 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~ 53 (183)
++|++++|+|++||||||+.+.|++.+.+..+.+.+ ++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 579999999999999999999999999877667764 443
No 476
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.18 E-value=2e-06 Score=74.53 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=39.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.+..|+.+.|+||||+|||||++.|.++++|.+|++.+....+.
T Consensus 207 aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 207 AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 36788999999999999999999999999999999988876543
No 477
>PRK06820 type III secretion system ATPase; Validated
Probab=98.17 E-value=3.2e-06 Score=71.94 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=38.4
Q ss_pred cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
++++.+ ++.+||.++|+|+||+|||||+++|++...|+.+.+-.-|+
T Consensus 152 ~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 152 RAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred ceecceEEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 455555 59999999999999999999999999999888765434444
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.16 E-value=2.5e-06 Score=71.10 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=26.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.++..+.|+||+||||||++++|++.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58899999999999999999999999843
No 479
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.15 E-value=2.3e-06 Score=68.99 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=35.1
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
.=..+.+++|+|+||||||||++.+.+.+++..+.+.+.|.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 34678999999999999999999999988877777777664
No 480
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.15 E-value=2.2e-06 Score=63.44 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
++++++++|++|+|||||+|.|.+-..-..|+|.-
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~ 68 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE 68 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence 46999999999999999999999987666677653
No 481
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.14 E-value=1.5e-06 Score=62.57 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 036195 20 IGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl 40 (183)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999998
No 482
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.13 E-value=4e-06 Score=58.74 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEec
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAV 53 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~ 53 (183)
.+..+.|+||+|+||||+++.++..+.... +-+.+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 367899999999999999999999987665 45555443
No 483
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.13 E-value=3.2e-06 Score=64.91 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
.++|+||||||||||++.+.+.+++..+ +.+...+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~ 38 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDI 38 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCc
Confidence 5899999999999999999999887655 54444443
No 484
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.11 E-value=1.7e-06 Score=62.99 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHh--cCCCCCCcEE
Q 036195 20 IGLYGVRGVGKSTLIKQLN--DMFSDMSHKF 48 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~--gl~~p~~G~I 48 (183)
++++|++|||||||++.|+ +...+.+|++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 6899999999999999999 6777676663
No 485
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.11 E-value=2.3e-06 Score=64.60 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=23.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++.+| +.+|+||||+||||++.+|.-.+
T Consensus 15 i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 15 IDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 446666 99999999999999999987665
No 486
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.11 E-value=3.7e-06 Score=64.42 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSL 55 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~ 55 (183)
++.|.||+||||||+++.+.+.+.+ ..|.|.....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 7889999999999999998888764 467776655443
No 487
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.10 E-value=4.5e-06 Score=64.35 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCCCC
Q 036195 19 IIGLYGVRGVGKSTLI-KQLNDMFSD 43 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl-~~i~gl~~p 43 (183)
.++|+|+||||||||+ +.+.|...+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 5899999999999999 688888754
No 488
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.10 E-value=3.5e-06 Score=66.09 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=34.3
Q ss_pred ecCccEEEEEcCCCCcHHHH-HHHHhcCCCCCCcEEEEEec
Q 036195 14 DDGVKIIGLYGVRGVGKSTL-IKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTL-l~~i~gl~~p~~G~I~~~g~ 53 (183)
+++|+++.|+|||||||||| +++++++.++....+++...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 78999999999999999999 79999988776666666643
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.09 E-value=2.8e-06 Score=63.74 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEec
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAV 53 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~ 53 (183)
-+++|+|++|||||||++.|...+.+.. |.|...+.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 4899999999999999999999987644 78877554
No 490
>PLN02165 adenylate isopentenyltransferase
Probab=98.09 E-value=3e-06 Score=69.58 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=34.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEE-EEecCcc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFA-IYAVSLQ 56 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~-~~g~~~~ 56 (183)
.+|++++|+||+|||||||...|++.+. .+.+++. +.|.++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 6788999999999999999999999975 4567773 4666654
No 491
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.07 E-value=4.1e-06 Score=69.39 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=35.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
+..+..+.|.||.|||||||+++|++.+++..+.+.+.+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 677889999999999999999999999999888888765
No 492
>PRK07429 phosphoribulokinase; Provisional
Probab=98.05 E-value=4.8e-06 Score=68.54 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA 49 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 49 (183)
++||.|+|||||||+.+.|++++.+..+.+.
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi 40 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVI 40 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence 8999999999999999999999988876544
No 493
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.02 E-value=5.6e-06 Score=70.37 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=33.4
Q ss_pred ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195 8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS 45 (183)
Q Consensus 8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~ 45 (183)
+++.+ ++.+|+.++|+|+||+|||||+++|++...++-
T Consensus 152 vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 152 VIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred eeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 45544 589999999999999999999999999998864
No 494
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.02 E-value=4.3e-06 Score=62.59 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=34.9
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecCc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVSL 55 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~ 55 (183)
..+|.++.+.|++||||||+.+.|+..+. +..|.+.+++..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 46889999999999999999999988774 5567788877554
No 495
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.02 E-value=5e-06 Score=65.57 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAI 50 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~ 50 (183)
.++++|++||||||++++|+|+ .+..+|.++-
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~ 61 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 61 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc
Confidence 5889999999999999999998 5556777753
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.00 E-value=6.5e-06 Score=59.12 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=27.4
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
+.+|.+++|.|+.|||||||.|.++..+..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999999988753
No 497
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=3e-06 Score=63.61 Aligned_cols=82 Identities=7% Similarity=-0.092 Sum_probs=51.3
Q ss_pred cCCCCccCCCCCCCChhhhh-------ee-----cCchhhc--cccc-ccC---cccccccccceeecCcccccCCCCCC
Q 036195 97 HGCPSLRKLPFSLESGKRNG-------VL-----IGEEEWW--NQLE-WDD---EATKHVFSSKLIITTPQTVISIPQPS 158 (183)
Q Consensus 97 l~L~~L~~~~~~~LSgGqk~-------~i-----~~~~~w~--~~l~-~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
.+...+.+.++..+|+|+.+ .+ ..+++.+ |.+. ..| ...+..+..++..++.+ .+.+++++
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~ 137 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTS 137 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 34445566777778887643 11 2334442 3322 223 44455566666666555 77889999
Q ss_pred ceeee---------eecccceEEEEeeCCC
Q 036195 159 YTYEA---------TIRPRYELICIDVDDT 179 (183)
Q Consensus 159 ~~~~~---------~~~~~~~~~~~~~~~~ 179 (183)
|+... +...+|.+|+++.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~aD~ii~l~~~~~ 167 (187)
T cd01124 138 EQSGLEGTGFGGGDVEYLVDGVIRLRLDEE 167 (187)
T ss_pred ccccCCCcccCcCceeEeeeEEEEEEEEcc
Confidence 98875 6789999999997743
No 498
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.00 E-value=3.6e-06 Score=65.45 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFA 49 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~ 49 (183)
+++|.||+||||||+.+.|+ |+..+++|.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~ 37 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY 37 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence 68999999999999999999 66668888774
No 499
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.99 E-value=5e-06 Score=68.96 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVS 54 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~ 54 (183)
.+-..++..+.|.||+||||||+++.+.+.+. +..+.|.....+
T Consensus 116 ~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 116 ELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred HHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 34456788999999999999999999998665 456777665543
No 500
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=4.2e-06 Score=69.88 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+.+++|++++++||||+||||++..|++...
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999998653
Done!