Query 036195
Match_columns 183
No_of_seqs 295 out of 2196
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 3.6E-33 1.2E-37 229.6 1.6 167 6-175 17-213 (359)
2 4g1u_C Hemin import ATP-bindin 100.0 3E-33 1E-37 222.3 0.8 165 6-175 24-222 (266)
3 3tui_C Methionine import ATP-b 100.0 5.2E-33 1.8E-37 228.9 2.2 167 7-175 42-238 (366)
4 3rlf_A Maltose/maltodextrin im 100.0 1.1E-32 3.7E-37 228.2 1.3 163 6-175 16-208 (381)
5 3tif_A Uncharacterized ABC tra 100.0 1.8E-32 6E-37 214.2 2.2 167 7-175 19-219 (235)
6 2it1_A 362AA long hypothetical 100.0 2.7E-32 9.4E-37 224.8 2.2 163 6-175 16-208 (362)
7 1g6h_A High-affinity branched- 100.0 4E-32 1.4E-36 214.8 3.0 165 6-175 20-227 (257)
8 2pcj_A ABC transporter, lipopr 100.0 4.4E-32 1.5E-36 210.6 2.8 167 6-175 17-213 (224)
9 3gfo_A Cobalt import ATP-bindi 100.0 2.2E-32 7.6E-37 218.1 0.6 166 7-175 22-218 (275)
10 2olj_A Amino acid ABC transpor 100.0 3.4E-32 1.2E-36 215.8 1.7 166 6-175 37-233 (263)
11 1z47_A CYSA, putative ABC-tran 100.0 3.8E-32 1.3E-36 223.4 1.4 162 7-175 29-220 (355)
12 2yyz_A Sugar ABC transporter, 100.0 4.9E-32 1.7E-36 223.1 1.7 163 6-175 16-208 (359)
13 2onk_A Molybdate/tungstate ABC 100.0 6.7E-32 2.3E-36 211.5 2.3 161 7-175 13-201 (240)
14 1b0u_A Histidine permease; ABC 100.0 5.8E-32 2E-36 214.4 1.7 168 6-175 19-227 (262)
15 1v43_A Sugar-binding transport 100.0 7.5E-32 2.6E-36 222.9 1.6 162 7-175 25-216 (372)
16 1vpl_A ABC transporter, ATP-bi 100.0 7E-32 2.4E-36 213.3 1.2 163 6-175 28-220 (256)
17 3d31_A Sulfate/molybdate ABC t 100.0 6.5E-32 2.2E-36 221.6 0.9 161 8-175 15-202 (348)
18 2yz2_A Putative ABC transporte 100.0 1.9E-31 6.6E-36 211.9 3.3 161 6-175 20-212 (266)
19 1oxx_K GLCV, glucose, ABC tran 100.0 6.5E-32 2.2E-36 222.2 0.2 166 8-175 20-215 (353)
20 2ihy_A ABC transporter, ATP-bi 100.0 1.8E-31 6.2E-36 213.3 1.9 168 6-175 34-237 (279)
21 1g29_1 MALK, maltose transport 100.0 1.2E-31 4.1E-36 221.9 0.8 169 6-175 16-214 (372)
22 1ji0_A ABC transporter; ATP bi 100.0 9.6E-32 3.3E-36 210.7 0.2 165 6-175 19-213 (240)
23 2qi9_C Vitamin B12 import ATP- 100.0 2.4E-31 8.2E-36 209.4 0.4 162 7-175 14-207 (249)
24 1sgw_A Putative ABC transporte 100.0 3E-31 1E-35 204.6 -0.3 158 7-176 23-208 (214)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-30 3.7E-35 205.8 2.5 165 6-175 16-218 (250)
26 2ixe_A Antigen peptide transpo 100.0 2.2E-30 7.7E-35 206.2 2.7 164 6-175 32-230 (271)
27 2nq2_C Hypothetical ABC transp 100.0 2E-30 6.8E-35 204.7 1.3 170 6-175 18-203 (253)
28 2zu0_C Probable ATP-dependent 100.0 5.2E-30 1.8E-34 203.7 2.9 165 6-175 33-239 (267)
29 1mv5_A LMRA, multidrug resista 100.0 1.1E-29 3.7E-34 199.3 3.6 162 6-175 15-211 (243)
30 2ff7_A Alpha-hemolysin translo 100.0 6.1E-30 2.1E-34 201.2 1.6 162 6-175 22-217 (247)
31 2pjz_A Hypothetical protein ST 99.9 2.6E-29 8.9E-34 199.2 3.7 156 6-175 18-200 (263)
32 2ghi_A Transport protein; mult 99.9 2.1E-28 7.1E-33 193.8 2.8 160 7-175 34-227 (260)
33 3nh6_A ATP-binding cassette SU 99.9 4.7E-29 1.6E-33 201.5 -1.4 162 6-175 67-262 (306)
34 2pze_A Cystic fibrosis transme 99.9 8.1E-28 2.8E-32 187.1 4.2 157 6-175 21-203 (229)
35 3gd7_A Fusion complex of cysti 99.9 4.3E-28 1.5E-32 201.6 2.5 161 6-175 34-227 (390)
36 2cbz_A Multidrug resistance-as 99.9 1.6E-27 5.3E-32 186.4 3.5 159 6-175 18-202 (237)
37 3ozx_A RNAse L inhibitor; ATP 99.9 7.8E-28 2.7E-32 207.5 -2.2 160 11-175 288-460 (538)
38 3b5x_A Lipid A export ATP-bind 99.9 1E-26 3.5E-31 202.5 3.1 162 6-175 356-552 (582)
39 2bbs_A Cystic fibrosis transme 99.9 7.3E-27 2.5E-31 187.5 1.9 157 5-175 50-232 (290)
40 3b60_A Lipid A export ATP-bind 99.9 1.3E-26 4.4E-31 201.9 0.4 162 6-175 356-552 (582)
41 3bk7_A ABC transporter ATP-bin 99.9 1.4E-26 4.7E-31 202.2 0.3 158 11-175 376-546 (607)
42 1yqt_A RNAse L inhibitor; ATP- 99.9 1E-26 3.4E-31 200.8 -0.9 158 11-175 306-476 (538)
43 4a82_A Cystic fibrosis transme 99.9 2.1E-26 7.2E-31 200.4 0.5 162 6-175 354-549 (578)
44 2yl4_A ATP-binding cassette SU 99.9 2.4E-26 8.3E-31 200.6 -0.5 161 7-175 358-555 (595)
45 3qf4_B Uncharacterized ABC tra 99.9 3E-26 1E-30 200.1 -0.5 162 6-175 368-563 (598)
46 3qf4_A ABC transporter, ATP-bi 99.9 8.3E-26 2.8E-30 196.9 1.8 162 6-175 356-551 (587)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 1.8E-26 6E-31 199.3 -2.8 165 7-175 36-232 (538)
48 3bk7_A ABC transporter ATP-bin 99.9 3E-26 1E-30 200.0 -3.0 165 7-175 106-302 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.9 6.5E-26 2.2E-30 195.6 -2.4 160 14-175 22-211 (538)
50 3j16_B RLI1P; ribosome recycli 99.9 1.7E-25 5.9E-30 195.2 -0.9 162 13-175 99-295 (608)
51 3j16_B RLI1P; ribosome recycli 99.9 5E-25 1.7E-29 192.2 1.8 160 7-175 361-542 (608)
52 3g5u_A MCG1178, multidrug resi 99.9 8.5E-24 2.9E-28 197.6 2.6 161 7-175 1047-1243(1284)
53 2iw3_A Elongation factor 3A; a 99.9 3E-24 1E-28 194.5 -0.6 83 89-175 879-972 (986)
54 3g5u_A MCG1178, multidrug resi 99.9 3.2E-23 1.1E-27 193.7 -1.0 162 6-175 403-598 (1284)
55 3ux8_A Excinuclease ABC, A sub 99.8 1.4E-22 5E-27 178.9 1.5 168 6-175 31-277 (670)
56 4f4c_A Multidrug resistance pr 99.8 9.3E-22 3.2E-26 184.3 4.4 163 5-175 430-626 (1321)
57 4f4c_A Multidrug resistance pr 99.8 1.4E-21 4.8E-26 183.1 4.0 162 6-175 1092-1289(1321)
58 2iw3_A Elongation factor 3A; a 99.8 1E-21 3.5E-26 178.0 -0.9 155 6-175 448-619 (986)
59 3ux8_A Excinuclease ABC, A sub 99.8 1.1E-20 3.8E-25 166.8 -1.9 84 90-175 523-619 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.4E-21 4.6E-26 165.8 -8.6 155 11-175 132-323 (460)
61 1znw_A Guanylate kinase, GMP k 99.7 9.4E-22 3.2E-26 150.1 -11.0 156 5-174 8-201 (207)
62 2vf7_A UVRA2, excinuclease ABC 99.7 1.2E-19 4E-24 162.9 -4.8 84 90-175 710-806 (842)
63 2r6f_A Excinuclease ABC subuni 99.7 9.3E-19 3.2E-23 158.0 -0.5 84 90-175 825-921 (972)
64 4gp7_A Metallophosphoesterase; 99.7 1.4E-19 4.9E-24 134.3 -6.8 132 11-166 3-164 (171)
65 1tf7_A KAIC; homohexamer, hexa 99.7 1.3E-20 4.4E-25 162.2 -14.5 164 6-176 25-209 (525)
66 3b85_A Phosphate starvation-in 99.7 9.1E-19 3.1E-23 134.1 -3.5 129 6-166 13-163 (208)
67 2ygr_A Uvrabc system protein A 99.7 4.1E-18 1.4E-22 154.2 0.1 84 90-175 843-939 (993)
68 2v9p_A Replication protein E1; 99.7 7.4E-17 2.5E-21 130.0 5.3 134 6-175 113-251 (305)
69 4aby_A DNA repair protein RECN 99.6 7.2E-18 2.5E-22 140.6 -0.8 62 110-174 296-368 (415)
70 2obl_A ESCN; ATPase, hydrolase 99.6 1.1E-18 3.6E-23 143.2 -6.9 159 7-174 60-239 (347)
71 3pih_A Uvrabc system protein A 99.6 5.8E-17 2E-21 146.6 3.1 85 89-175 784-881 (916)
72 1tq4_A IIGP1, interferon-induc 99.6 2.1E-18 7.1E-23 144.3 -6.3 159 6-171 36-247 (413)
73 1z6g_A Guanylate kinase; struc 99.6 1.5E-18 5.3E-23 133.5 -7.2 42 11-56 17-58 (218)
74 2dpy_A FLII, flagellum-specifi 99.6 1.1E-17 3.7E-22 141.1 -6.8 162 7-174 146-328 (438)
75 1ye8_A Protein THEP1, hypothet 99.6 2.6E-17 9E-22 123.1 -5.4 140 19-180 2-164 (178)
76 2ehv_A Hypothetical protein PH 99.6 1E-17 3.5E-22 130.0 -8.4 43 13-55 26-70 (251)
77 3b9q_A Chloroplast SRP recepto 99.5 2.4E-17 8.1E-22 132.9 -7.4 142 11-159 94-255 (302)
78 1htw_A HI0065; nucleotide-bind 99.5 1.2E-15 4.3E-20 111.9 1.7 45 11-56 27-71 (158)
79 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 6.2E-16 2.1E-20 127.6 -0.6 70 104-175 274-358 (365)
80 1tf7_A KAIC; homohexamer, hexa 99.5 9.6E-16 3.3E-20 131.9 -0.6 141 13-176 277-442 (525)
81 1e69_A Chromosome segregation 99.5 4.2E-15 1.4E-19 120.5 2.9 75 101-178 211-298 (322)
82 3aez_A Pantothenate kinase; tr 99.5 1.4E-14 4.9E-19 117.1 5.2 97 14-118 87-185 (312)
83 2og2_A Putative signal recogni 99.5 1.8E-16 6.2E-21 130.4 -7.2 142 11-159 151-312 (359)
84 3sop_A Neuronal-specific septi 99.5 8.3E-16 2.8E-20 122.0 -4.5 38 19-56 4-41 (270)
85 2eyu_A Twitching motility prot 99.4 5.7E-14 2E-18 110.9 1.6 51 5-55 13-64 (261)
86 4a74_A DNA repair and recombin 99.4 6.5E-15 2.2E-19 112.7 -5.8 42 13-54 21-69 (231)
87 1cr0_A DNA primase/helicase; R 99.3 3.2E-14 1.1E-18 113.6 -3.6 162 7-177 23-235 (296)
88 3euj_A Chromosome partition pr 99.3 2.7E-13 9.3E-18 115.2 1.7 50 6-56 17-68 (483)
89 2rcn_A Probable GTPase ENGC; Y 99.3 9.2E-13 3.1E-17 108.2 3.9 93 14-116 212-320 (358)
90 2w0m_A SSO2452; RECA, SSPF, un 99.3 3.6E-13 1.2E-17 102.9 0.9 159 8-178 11-193 (235)
91 2jeo_A Uridine-cytidine kinase 99.3 4E-13 1.4E-17 104.7 0.5 37 5-41 11-49 (245)
92 3asz_A Uridine kinase; cytidin 99.3 5.4E-14 1.8E-18 106.8 -4.5 142 14-164 3-164 (211)
93 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.3E-12 4.4E-17 106.4 2.3 47 8-54 160-208 (330)
94 2yv5_A YJEQ protein; hydrolase 99.2 1.9E-12 6.5E-17 104.1 2.1 43 13-56 161-206 (302)
95 1rj9_A FTSY, signal recognitio 99.2 4.3E-12 1.5E-16 102.2 3.8 42 16-57 101-142 (304)
96 3qkt_A DNA double-strand break 99.2 3.6E-12 1.2E-16 103.9 3.4 75 102-178 241-330 (339)
97 2gza_A Type IV secretion syste 99.2 3.8E-12 1.3E-16 104.7 3.4 43 11-53 169-211 (361)
98 1nlf_A Regulatory protein REPA 99.2 7.4E-13 2.5E-17 105.0 -1.1 137 13-164 26-184 (279)
99 3e70_C DPA, signal recognition 99.2 7.7E-12 2.6E-16 101.7 3.6 43 15-57 127-169 (328)
100 2yhs_A FTSY, cell division pro 99.2 5.4E-12 1.9E-16 107.2 2.7 46 11-56 287-332 (503)
101 1zp6_A Hypothetical protein AT 99.2 1.4E-11 4.7E-16 91.8 4.1 42 13-56 5-46 (191)
102 1s96_A Guanylate kinase, GMP k 99.2 8.9E-12 3.1E-16 95.8 2.6 43 13-55 12-56 (219)
103 2qm8_A GTPase/ATPase; G protei 99.2 1E-11 3.5E-16 101.3 3.1 51 7-57 43-95 (337)
104 3thx_A DNA mismatch repair pro 99.2 2E-13 6.9E-18 123.9 -7.8 129 7-174 650-797 (934)
105 3tr0_A Guanylate kinase, GMP k 99.2 1.8E-11 6E-16 92.1 4.0 41 11-55 1-41 (205)
106 3lnc_A Guanylate kinase, GMP k 99.2 9.6E-12 3.3E-16 95.8 2.5 31 11-41 21-52 (231)
107 1sq5_A Pantothenate kinase; P- 99.1 5.9E-12 2E-16 101.4 1.2 40 15-54 78-122 (308)
108 1u0l_A Probable GTPase ENGC; p 99.1 1.5E-11 5.2E-16 98.7 3.1 45 13-57 165-212 (301)
109 3szr_A Interferon-induced GTP- 99.1 5.6E-13 1.9E-17 116.5 -6.2 137 20-164 48-199 (608)
110 1qhl_A Protein (cell division 99.1 6.9E-13 2.3E-17 102.6 -5.0 45 11-56 22-66 (227)
111 2ewv_A Twitching motility prot 99.1 1.5E-11 5.2E-16 101.6 1.3 49 7-55 126-175 (372)
112 3thx_B DNA mismatch repair pro 99.1 2.1E-12 7.1E-17 117.1 -4.5 128 6-164 660-799 (918)
113 2o8b_B DNA mismatch repair pro 99.1 9.9E-13 3.4E-17 120.6 -6.8 136 6-175 769-926 (1022)
114 2i3b_A HCR-ntpase, human cance 99.1 1.2E-11 4E-16 93.1 0.1 38 17-56 1-38 (189)
115 3c8u_A Fructokinase; YP_612366 99.1 2.4E-11 8.3E-16 92.2 1.6 43 14-56 19-64 (208)
116 1p9r_A General secretion pathw 99.1 3.3E-11 1.1E-15 100.9 2.5 48 8-55 158-205 (418)
117 2oap_1 GSPE-2, type II secreti 99.0 6.3E-11 2.2E-15 101.6 3.3 43 12-54 255-297 (511)
118 1t9h_A YLOQ, probable GTPase E 99.0 3.4E-11 1.2E-15 97.0 0.9 45 12-56 168-215 (307)
119 1lvg_A Guanylate kinase, GMP k 99.0 5.1E-11 1.7E-15 90.0 1.6 28 15-42 2-29 (198)
120 3a00_A Guanylate kinase, GMP k 99.0 6.7E-11 2.3E-15 88.2 2.2 26 17-42 1-26 (186)
121 1pui_A ENGB, probable GTP-bind 99.0 1.2E-10 4.1E-15 87.7 1.8 44 7-50 16-64 (210)
122 1lw7_A Transcriptional regulat 99.0 9.9E-11 3.4E-15 96.2 0.8 41 11-51 162-208 (365)
123 3jvv_A Twitching mobility prot 98.9 1.2E-10 4E-15 95.7 0.9 48 7-54 113-161 (356)
124 2j41_A Guanylate kinase; GMP, 98.9 4.6E-10 1.6E-14 84.3 4.0 35 12-46 1-35 (207)
125 2bdt_A BH3686; alpha-beta prot 98.9 3.6E-10 1.2E-14 84.1 3.0 37 17-56 2-38 (189)
126 4eun_A Thermoresistant glucoki 98.9 8.1E-10 2.8E-14 83.2 3.4 40 13-56 25-64 (200)
127 2f1r_A Molybdopterin-guanine d 98.9 2.5E-10 8.6E-15 84.5 -0.2 39 18-56 3-44 (171)
128 1nij_A Hypothetical protein YJ 98.8 8.9E-10 3E-14 89.0 2.8 41 17-57 4-52 (318)
129 2vp4_A Deoxynucleoside kinase; 98.8 1.1E-09 3.9E-14 84.2 3.1 42 11-56 14-55 (230)
130 3kta_A Chromosome segregation 98.8 1.5E-09 5.2E-14 80.1 3.7 36 11-47 21-56 (182)
131 3uie_A Adenylyl-sulfate kinase 98.8 3.3E-10 1.1E-14 85.3 -0.1 44 12-56 20-65 (200)
132 2bbw_A Adenylate kinase 4, AK4 98.8 7.9E-10 2.7E-14 85.8 1.5 38 16-53 26-66 (246)
133 1kgd_A CASK, peripheral plasma 98.8 1.3E-09 4.6E-14 80.7 2.7 36 15-50 3-39 (180)
134 1rz3_A Hypothetical protein rb 98.8 1.5E-09 5.1E-14 81.9 2.7 43 13-55 18-60 (201)
135 4e22_A Cytidylate kinase; P-lo 98.8 3E-10 1E-14 88.8 -1.3 41 15-55 25-76 (252)
136 2qag_B Septin-6, protein NEDD5 98.8 1.4E-09 4.9E-14 91.0 2.7 31 11-41 34-66 (427)
137 3ec2_A DNA replication protein 98.8 5.2E-10 1.8E-14 82.7 -0.8 40 8-47 29-68 (180)
138 1n0w_A DNA repair protein RAD5 98.8 6.1E-09 2.1E-13 79.9 5.1 41 14-54 21-68 (243)
139 1sxj_E Activator 1 40 kDa subu 98.8 8.8E-10 3E-14 89.4 0.3 39 18-56 37-76 (354)
140 2kjq_A DNAA-related protein; s 98.8 2.3E-09 7.9E-14 77.4 2.4 40 16-56 35-76 (149)
141 1ewq_A DNA mismatch repair pro 98.8 1.6E-09 5.5E-14 96.8 1.6 42 6-48 566-608 (765)
142 1pzn_A RAD51, DNA repair and r 98.7 5.7E-09 1.9E-13 85.4 3.9 44 12-55 126-176 (349)
143 2x8a_A Nuclear valosin-contain 98.7 7.3E-09 2.5E-13 82.0 4.2 46 7-56 34-81 (274)
144 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 8.6E-09 2.9E-13 85.6 4.2 41 13-53 16-68 (392)
145 1vma_A Cell division protein F 98.7 5.9E-09 2E-13 83.9 3.0 45 12-56 99-143 (306)
146 1in4_A RUVB, holliday junction 98.7 1.6E-10 5.4E-15 93.9 -6.6 37 18-54 52-92 (334)
147 1knq_A Gluconate kinase; ALFA/ 98.7 8.9E-09 3.1E-13 75.5 3.4 38 15-56 6-43 (175)
148 3ney_A 55 kDa erythrocyte memb 98.7 7.2E-09 2.4E-13 78.3 2.8 34 9-42 11-44 (197)
149 3tau_A Guanylate kinase, GMP k 98.7 1.5E-08 5.1E-13 76.8 4.1 29 15-43 6-34 (208)
150 3cr8_A Sulfate adenylyltranfer 98.7 3.7E-09 1.3E-13 91.4 0.8 43 13-55 365-409 (552)
151 1oix_A RAS-related protein RAB 98.6 1E-08 3.6E-13 76.3 3.0 37 19-55 31-78 (191)
152 2qnr_A Septin-2, protein NEDD5 98.6 8.5E-09 2.9E-13 82.7 1.9 46 6-56 11-57 (301)
153 1zu4_A FTSY; GTPase, signal re 98.6 1.3E-08 4.4E-13 82.4 2.8 46 12-57 100-145 (320)
154 1w1w_A Structural maintenance 98.6 2.3E-08 7.8E-13 83.8 3.5 71 105-177 329-412 (430)
155 3tqc_A Pantothenate kinase; bi 98.6 2.8E-08 9.5E-13 80.4 3.8 36 19-54 94-131 (321)
156 2o5v_A DNA replication and rep 98.6 4.6E-08 1.6E-12 80.3 4.8 64 104-175 259-341 (359)
157 2px0_A Flagellar biosynthesis 98.6 2.3E-08 7.8E-13 80.1 2.8 42 15-56 103-145 (296)
158 1wb9_A DNA mismatch repair pro 98.6 2.7E-08 9.3E-13 89.3 3.5 134 6-171 595-739 (800)
159 1udx_A The GTP-binding protein 98.5 1.7E-08 5.9E-13 84.4 1.9 31 11-41 151-181 (416)
160 1ls1_A Signal recognition part 98.5 2.8E-08 9.6E-13 79.5 2.9 48 10-57 91-138 (295)
161 1ixz_A ATP-dependent metallopr 98.5 4E-08 1.4E-12 76.3 3.3 41 11-55 45-85 (254)
162 1iy2_A ATP-dependent metallopr 98.5 4.8E-08 1.7E-12 77.0 3.4 42 11-56 69-110 (278)
163 2www_A Methylmalonic aciduria 98.5 4.5E-08 1.5E-12 80.0 2.9 42 16-57 73-114 (349)
164 2cvh_A DNA repair and recombin 98.5 9.2E-08 3.1E-12 72.2 4.0 38 14-53 17-54 (220)
165 3pih_A Uvrabc system protein A 98.5 3.1E-09 1.1E-13 96.4 -5.1 137 32-175 383-539 (916)
166 2f9l_A RAB11B, member RAS onco 98.5 4.9E-08 1.7E-12 72.8 2.2 37 19-55 7-54 (199)
167 3lda_A DNA repair protein RAD5 98.5 1.3E-07 4.3E-12 78.8 4.7 41 14-54 175-222 (400)
168 1kag_A SKI, shikimate kinase I 98.4 7E-08 2.4E-12 70.3 2.7 33 16-52 3-35 (173)
169 2qag_C Septin-7; cell cycle, c 98.4 1.1E-07 3.8E-12 79.6 4.2 37 6-46 24-60 (418)
170 2p67_A LAO/AO transport system 98.4 7.4E-08 2.5E-12 78.4 2.8 50 7-56 44-95 (341)
171 1svm_A Large T antigen; AAA+ f 98.4 7.7E-08 2.6E-12 79.5 2.4 42 6-50 156-199 (377)
172 2pez_A Bifunctional 3'-phospho 98.4 7.9E-08 2.7E-12 70.7 1.8 40 15-55 3-44 (179)
173 3vaa_A Shikimate kinase, SK; s 98.4 1.8E-07 6.3E-12 70.1 3.5 36 6-41 12-49 (199)
174 2qt1_A Nicotinamide riboside k 98.3 2.8E-07 9.6E-12 69.3 3.6 30 13-42 17-46 (207)
175 1cke_A CK, MSSA, protein (cyti 98.3 6.3E-08 2.2E-12 73.6 -0.5 34 17-50 5-41 (227)
176 1f2t_B RAD50 ABC-ATPase; DNA d 98.3 2.1E-08 7.2E-13 72.4 -3.2 72 103-176 51-137 (148)
177 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 4.9E-07 1.7E-11 65.1 3.5 28 12-40 19-46 (149)
178 1m7g_A Adenylylsulfate kinase; 98.3 1E-07 3.5E-12 72.1 -0.4 45 11-55 19-65 (211)
179 3k1j_A LON protease, ATP-depen 98.2 5.7E-07 2E-11 78.4 3.7 44 13-56 56-100 (604)
180 3nwj_A ATSK2; P loop, shikimat 98.2 2.4E-07 8.3E-12 72.4 1.0 36 6-41 32-72 (250)
181 2ffh_A Protein (FFH); SRP54, s 98.2 7.4E-07 2.5E-11 74.6 3.9 47 11-57 92-138 (425)
182 2dr3_A UPF0273 protein PH0284; 98.2 7.9E-07 2.7E-11 68.0 3.5 40 14-53 20-60 (247)
183 1jjv_A Dephospho-COA kinase; P 98.2 9.5E-07 3.2E-11 66.2 3.8 30 19-53 4-33 (206)
184 1j8m_F SRP54, signal recogniti 98.2 5.3E-07 1.8E-11 72.2 1.9 41 17-57 98-138 (297)
185 2yvu_A Probable adenylyl-sulfa 98.1 7.6E-07 2.6E-11 65.8 2.3 38 13-50 9-46 (186)
186 3m6a_A ATP-dependent protease 98.1 6.8E-07 2.3E-11 77.1 1.6 37 16-52 107-143 (543)
187 4eaq_A DTMP kinase, thymidylat 98.1 2.1E-06 7E-11 66.1 3.9 38 14-52 23-60 (229)
188 1mky_A Probable GTP-binding pr 98.1 1.9E-06 6.6E-11 72.3 3.7 37 19-55 182-230 (439)
189 4ad8_A DNA repair protein RECN 98.1 6.7E-07 2.3E-11 76.6 0.8 69 105-176 392-472 (517)
190 3qks_A DNA double-strand break 98.0 2.5E-06 8.7E-11 64.3 3.5 27 12-39 19-45 (203)
191 2if2_A Dephospho-COA kinase; a 98.0 2.1E-06 7.4E-11 64.1 3.1 22 19-40 3-24 (204)
192 1odf_A YGR205W, hypothetical 3 98.0 1.1E-06 3.7E-11 70.1 1.4 31 14-44 28-58 (290)
193 2qtf_A Protein HFLX, GTP-bindi 98.0 2.2E-06 7.5E-11 70.4 3.2 40 16-55 177-228 (364)
194 2ohf_A Protein OLA1, GTP-bindi 98.0 2.9E-06 9.8E-11 70.4 3.3 41 13-53 18-69 (396)
195 2qor_A Guanylate kinase; phosp 98.0 3.2E-06 1.1E-10 63.4 3.2 29 14-42 9-37 (204)
196 3hr8_A Protein RECA; alpha and 98.0 2.6E-06 9E-11 69.8 2.5 40 14-53 58-98 (356)
197 2gj8_A MNME, tRNA modification 98.0 5.3E-06 1.8E-10 60.4 3.8 27 15-41 2-28 (172)
198 2dhr_A FTSH; AAA+ protein, hex 98.0 5.1E-06 1.7E-10 70.9 4.2 45 8-56 55-101 (499)
199 3t61_A Gluconokinase; PSI-biol 97.9 3.8E-06 1.3E-10 62.7 2.3 35 17-55 18-52 (202)
200 2wjg_A FEOB, ferrous iron tran 97.9 4.4E-06 1.5E-10 61.1 2.4 22 19-40 9-30 (188)
201 2wji_A Ferrous iron transport 97.9 9.3E-06 3.2E-10 58.5 4.1 23 19-41 5-27 (165)
202 1ypw_A Transitional endoplasmi 97.9 7.8E-06 2.7E-10 73.6 4.1 46 6-53 227-272 (806)
203 2vf7_A UVRA2, excinuclease ABC 97.9 1.4E-06 4.8E-11 78.5 -0.8 83 91-175 360-454 (842)
204 2zej_A Dardarin, leucine-rich 97.9 7.2E-06 2.5E-10 60.1 3.1 25 19-43 4-28 (184)
205 1y63_A LMAJ004144AAA protein; 97.9 9E-06 3.1E-10 60.0 3.6 30 11-40 4-33 (184)
206 1ega_A Protein (GTP-binding pr 97.9 6.4E-06 2.2E-10 65.8 2.9 26 16-41 7-32 (301)
207 3cm0_A Adenylate kinase; ATP-b 97.8 9.6E-06 3.3E-10 59.5 3.4 25 15-39 2-26 (186)
208 2r6f_A Excinuclease ABC subuni 97.8 1.3E-06 4.5E-11 79.4 -1.8 81 93-175 487-579 (972)
209 1q3t_A Cytidylate kinase; nucl 97.8 1.1E-05 3.9E-10 61.8 3.5 28 13-40 12-39 (236)
210 3kl4_A SRP54, signal recogniti 97.8 7.9E-06 2.7E-10 68.6 2.4 41 16-56 96-136 (433)
211 2dy1_A Elongation factor G; tr 97.8 8.2E-06 2.8E-10 72.0 2.5 38 11-48 3-42 (665)
212 3t34_A Dynamin-related protein 97.8 1.3E-05 4.5E-10 65.3 3.6 41 8-49 26-68 (360)
213 1sxj_C Activator 1 40 kDa subu 97.8 3.2E-06 1.1E-10 68.3 -0.2 39 14-52 41-81 (340)
214 1np6_A Molybdopterin-guanine d 97.8 8.5E-06 2.9E-10 60.1 2.1 35 18-52 7-44 (174)
215 2p5t_B PEZT; postsegregational 97.8 1.1E-05 3.8E-10 62.6 2.8 41 13-55 28-68 (253)
216 1m2o_B GTP-binding protein SAR 97.7 1.5E-05 5.1E-10 58.8 3.2 35 4-39 9-45 (190)
217 2ygr_A Uvrabc system protein A 97.7 1.2E-06 4E-11 79.9 -3.4 81 93-175 504-596 (993)
218 3auy_A DNA double-strand break 97.7 1.5E-05 5.2E-10 65.4 3.4 69 105-176 276-360 (371)
219 3lxx_A GTPase IMAP family memb 97.7 2.4E-05 8.2E-10 59.9 3.9 28 19-46 31-58 (239)
220 4ag6_A VIRB4 ATPase, type IV s 97.7 1.4E-05 4.8E-10 65.8 2.7 38 16-53 34-71 (392)
221 3r20_A Cytidylate kinase; stru 97.7 5.9E-06 2E-10 63.8 0.4 24 17-40 9-32 (233)
222 3kb2_A SPBC2 prophage-derived 97.7 2.3E-05 7.9E-10 56.5 3.2 23 19-41 3-25 (173)
223 2ius_A DNA translocase FTSK; n 97.7 2.2E-05 7.5E-10 67.1 3.6 46 12-57 162-209 (512)
224 2zr9_A Protein RECA, recombina 97.7 1.7E-05 5.8E-10 64.7 2.7 39 14-52 58-96 (349)
225 1f6b_A SAR1; gtpases, N-termin 97.6 2.4E-05 8.2E-10 58.1 3.0 46 6-52 13-68 (198)
226 1qhx_A CPT, protein (chloramph 97.6 3.9E-05 1.3E-09 55.7 3.6 26 17-42 3-28 (178)
227 1vht_A Dephospho-COA kinase; s 97.6 4E-05 1.4E-09 57.8 3.7 32 16-52 3-34 (218)
228 2ga8_A Hypothetical 39.9 kDa p 97.6 2E-05 6.9E-10 64.4 2.1 36 6-41 9-48 (359)
229 1lv7_A FTSH; alpha/beta domain 97.6 4.7E-05 1.6E-09 58.8 4.0 42 12-55 40-81 (257)
230 1jal_A YCHF protein; nucleotid 97.6 5.3E-05 1.8E-09 62.1 4.3 36 17-52 2-48 (363)
231 2rhm_A Putative kinase; P-loop 97.6 4.4E-05 1.5E-09 56.1 3.5 27 15-41 3-29 (193)
232 1kht_A Adenylate kinase; phosp 97.6 4.5E-05 1.6E-09 55.8 3.5 25 17-41 3-27 (192)
233 3lw7_A Adenylate kinase relate 97.6 4.2E-05 1.4E-09 54.9 3.2 19 19-37 3-21 (179)
234 1uf9_A TT1252 protein; P-loop, 97.6 5.4E-05 1.8E-09 56.0 3.8 33 17-54 8-40 (203)
235 1gtv_A TMK, thymidylate kinase 97.6 9.4E-06 3.2E-10 60.8 -0.4 30 19-48 2-31 (214)
236 2ze6_A Isopentenyl transferase 97.6 4.1E-05 1.4E-09 59.6 3.2 24 18-41 2-25 (253)
237 3cf0_A Transitional endoplasmi 97.5 3E-05 1E-09 61.7 2.4 42 10-53 42-83 (301)
238 3iij_A Coilin-interacting nucl 97.5 3.6E-05 1.2E-09 56.2 2.7 28 13-40 7-34 (180)
239 3ice_A Transcription terminati 97.5 4.9E-05 1.7E-09 62.9 3.4 30 12-41 169-198 (422)
240 2qag_A Septin-2, protein NEDD5 97.5 3.9E-05 1.3E-09 62.8 2.8 28 20-47 40-67 (361)
241 2jaq_A Deoxyguanosine kinase; 97.5 5.4E-05 1.8E-09 56.0 3.4 23 19-41 2-24 (205)
242 1via_A Shikimate kinase; struc 97.5 4.7E-05 1.6E-09 55.4 2.8 23 19-41 6-28 (175)
243 1ex7_A Guanylate kinase; subst 97.5 5.8E-05 2E-09 56.2 3.1 21 20-40 4-24 (186)
244 3k53_A Ferrous iron transport 97.5 5.8E-05 2E-09 59.0 3.2 24 19-42 5-28 (271)
245 4fcw_A Chaperone protein CLPB; 97.5 5.8E-05 2E-09 59.7 3.1 34 17-50 47-80 (311)
246 1ly1_A Polynucleotide kinase; 97.5 7.5E-05 2.5E-09 54.1 3.3 22 18-39 3-24 (181)
247 2v54_A DTMP kinase, thymidylat 97.4 8.6E-05 2.9E-09 55.0 3.7 27 15-41 2-28 (204)
248 3trf_A Shikimate kinase, SK; a 97.4 8.4E-05 2.9E-09 54.3 3.4 26 16-41 4-29 (185)
249 2c95_A Adenylate kinase 1; tra 97.4 9.4E-05 3.2E-09 54.4 3.6 27 15-41 7-33 (196)
250 1xjc_A MOBB protein homolog; s 97.4 5E-05 1.7E-09 55.8 2.0 27 18-44 5-31 (169)
251 1gvn_B Zeta; postsegregational 97.4 8.1E-05 2.8E-09 59.0 3.4 37 14-52 30-66 (287)
252 2r6a_A DNAB helicase, replicat 97.4 5.1E-05 1.8E-09 63.8 2.3 42 14-55 200-242 (454)
253 2plr_A DTMP kinase, probable t 97.4 0.0001 3.4E-09 54.9 3.6 34 16-50 3-36 (213)
254 3ihw_A Centg3; RAS, centaurin, 97.4 0.00012 4.2E-09 53.6 3.9 28 19-46 22-54 (184)
255 2wwf_A Thymidilate kinase, put 97.4 0.00011 3.7E-09 54.8 3.5 26 15-40 8-33 (212)
256 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.8E-09 53.8 3.5 25 16-40 2-26 (196)
257 3ake_A Cytidylate kinase; CMP 97.4 0.0001 3.5E-09 54.7 3.1 23 19-41 4-26 (208)
258 1nn5_A Similar to deoxythymidy 97.3 0.00012 4.3E-09 54.5 3.5 27 14-40 6-32 (215)
259 1nks_A Adenylate kinase; therm 97.3 0.00012 4.3E-09 53.4 3.2 24 19-42 3-26 (194)
260 3llm_A ATP-dependent RNA helic 97.3 8.7E-05 3E-09 56.7 2.3 25 14-38 73-97 (235)
261 2z0h_A DTMP kinase, thymidylat 97.3 0.00014 4.7E-09 53.5 3.3 23 19-41 2-24 (197)
262 1fnn_A CDC6P, cell division co 97.3 0.00018 6E-09 58.4 4.1 37 15-51 40-80 (389)
263 2ged_A SR-beta, signal recogni 97.3 0.00016 5.3E-09 52.9 3.2 25 18-42 49-73 (193)
264 3b1v_A Ferrous iron uptake tra 97.3 0.00016 5.4E-09 56.9 3.4 23 19-41 5-27 (272)
265 1v5w_A DMC1, meiotic recombina 97.3 0.00028 9.7E-09 57.2 4.9 27 14-40 119-145 (343)
266 2qby_A CDC6 homolog 1, cell di 97.3 9.9E-05 3.4E-09 59.6 2.2 38 15-52 43-84 (386)
267 2bwj_A Adenylate kinase 5; pho 97.2 0.00018 6.3E-09 52.9 3.4 28 14-41 9-36 (199)
268 2vli_A Antibiotic resistance p 97.2 0.00012 4.1E-09 53.3 2.3 26 16-41 4-29 (183)
269 1fzq_A ADP-ribosylation factor 97.2 0.00014 4.8E-09 53.0 2.6 30 17-46 16-49 (181)
270 1aky_A Adenylate kinase; ATP:A 97.2 0.00021 7.2E-09 53.9 3.6 27 15-41 2-28 (220)
271 1moz_A ARL1, ADP-ribosylation 97.2 7.2E-05 2.5E-09 54.1 0.9 34 6-39 6-40 (183)
272 2b6h_A ADP-ribosylation factor 97.2 0.00018 6.3E-09 52.9 3.1 37 4-40 16-52 (192)
273 3q72_A GTP-binding protein RAD 97.2 0.00016 5.3E-09 51.4 2.6 23 19-41 4-26 (166)
274 2nzj_A GTP-binding protein REM 97.2 0.00019 6.6E-09 51.3 3.2 23 19-41 6-28 (175)
275 1z2a_A RAS-related protein RAB 97.2 0.00018 6.1E-09 51.0 2.9 23 19-41 7-29 (168)
276 3fb4_A Adenylate kinase; psych 97.2 0.0002 7E-09 53.6 3.3 22 19-40 2-23 (216)
277 2e87_A Hypothetical protein PH 97.2 0.00017 5.7E-09 58.8 3.0 27 15-41 165-191 (357)
278 2erx_A GTP-binding protein DI- 97.2 0.00021 7E-09 50.8 3.2 22 19-40 5-26 (172)
279 1zd8_A GTP:AMP phosphotransfer 97.2 0.00021 7.3E-09 54.1 3.3 27 15-41 5-31 (227)
280 2w58_A DNAI, primosome compone 97.2 0.00017 6E-09 53.4 2.8 32 18-49 55-86 (202)
281 2dyk_A GTP-binding protein; GT 97.2 0.0002 6.8E-09 50.5 3.0 23 19-41 3-25 (161)
282 2ce2_X GTPase HRAS; signaling 97.2 0.00019 6.4E-09 50.6 2.8 23 19-41 5-27 (166)
283 2pbr_A DTMP kinase, thymidylat 97.2 0.00023 7.7E-09 52.1 3.3 23 19-41 2-24 (195)
284 1kao_A RAP2A; GTP-binding prot 97.2 0.00021 7E-09 50.5 3.0 23 19-41 5-27 (167)
285 1zuh_A Shikimate kinase; alpha 97.2 0.00025 8.5E-09 51.1 3.4 23 18-40 8-30 (168)
286 1z0j_A RAB-22, RAS-related pro 97.2 0.00022 7.4E-09 50.7 3.0 23 19-41 8-30 (170)
287 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.8E-09 51.6 2.8 24 18-41 3-26 (173)
288 3q85_A GTP-binding protein REM 97.2 0.00023 8E-09 50.6 3.1 23 19-41 4-26 (169)
289 2pt5_A Shikimate kinase, SK; a 97.2 0.00026 8.9E-09 50.8 3.4 23 19-41 2-24 (168)
290 1u8z_A RAS-related protein RAL 97.2 0.00022 7.4E-09 50.4 2.9 23 19-41 6-28 (168)
291 1ukz_A Uridylate kinase; trans 97.1 0.00028 9.7E-09 52.3 3.6 27 15-41 13-39 (203)
292 1z08_A RAS-related protein RAB 97.1 0.00023 7.8E-09 50.6 3.0 23 19-41 8-30 (170)
293 3dl0_A Adenylate kinase; phosp 97.1 0.00025 8.4E-09 53.2 3.3 23 19-41 2-24 (216)
294 3kta_B Chromosome segregation 97.1 2.1E-05 7.1E-10 58.0 -2.6 74 101-177 56-142 (173)
295 1sky_E F1-ATPase, F1-ATP synth 97.1 6.9E-05 2.3E-09 63.4 0.2 43 8-50 141-184 (473)
296 1qf9_A UMP/CMP kinase, protein 97.1 0.00028 9.5E-09 51.5 3.5 24 17-40 6-29 (194)
297 2cdn_A Adenylate kinase; phosp 97.1 0.0003 1E-08 52.2 3.7 27 15-41 18-44 (201)
298 3tw8_B RAS-related protein RAB 97.1 0.00022 7.4E-09 51.2 2.8 23 19-41 11-33 (181)
299 3lxw_A GTPase IMAP family memb 97.1 0.00023 7.8E-09 55.0 3.1 23 19-41 23-45 (247)
300 1g16_A RAS-related protein SEC 97.1 0.00022 7.4E-09 50.7 2.8 23 19-41 5-27 (170)
301 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00024 8.1E-09 51.0 3.0 23 19-41 9-31 (177)
302 1ky3_A GTP-binding protein YPT 97.1 0.00024 8.2E-09 51.0 3.0 23 19-41 10-32 (182)
303 1svi_A GTP-binding protein YSX 97.1 0.00022 7.6E-09 52.1 2.8 25 17-41 23-47 (195)
304 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8.1E-09 53.6 3.0 26 16-41 4-29 (222)
305 1c1y_A RAS-related protein RAP 97.1 0.00025 8.5E-09 50.2 2.9 22 19-40 5-26 (167)
306 2lkc_A Translation initiation 97.1 0.00035 1.2E-08 50.1 3.8 25 16-40 7-31 (178)
307 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0003 1E-08 54.6 3.6 25 16-40 3-27 (260)
308 1ek0_A Protein (GTP-binding pr 97.1 0.00036 1.2E-08 49.4 3.7 23 19-41 5-27 (170)
309 2ce7_A Cell division protein F 97.1 0.00024 8.2E-09 60.3 3.1 26 14-41 48-73 (476)
310 3pqc_A Probable GTP-binding pr 97.1 0.00024 8.1E-09 51.7 2.8 23 19-41 25-47 (195)
311 3bos_A Putative DNA replicatio 97.1 0.00033 1.1E-08 52.8 3.6 29 16-44 51-79 (242)
312 2fn4_A P23, RAS-related protei 97.1 0.00025 8.5E-09 50.9 2.8 22 19-40 11-32 (181)
313 2grj_A Dephospho-COA kinase; T 97.1 0.0003 1E-08 52.5 3.3 25 16-40 11-35 (192)
314 2z43_A DNA repair and recombin 97.1 0.00043 1.5E-08 55.6 4.5 41 14-54 104-151 (324)
315 1uj2_A Uridine-cytidine kinase 97.1 0.0003 1E-08 54.4 3.3 24 18-41 23-46 (252)
316 2iyv_A Shikimate kinase, SK; t 97.1 0.00024 8.4E-09 51.8 2.6 23 18-40 3-25 (184)
317 1r2q_A RAS-related protein RAB 97.1 0.00029 1E-08 49.9 2.9 22 19-40 8-29 (170)
318 2cxx_A Probable GTP-binding pr 97.1 0.00037 1.3E-08 50.5 3.5 23 19-41 3-25 (190)
319 4dsu_A GTPase KRAS, isoform 2B 97.1 0.0003 1E-08 50.9 3.0 23 19-41 6-28 (189)
320 2oil_A CATX-8, RAS-related pro 97.1 0.00029 9.9E-09 51.5 2.9 23 19-41 27-49 (193)
321 1wf3_A GTP-binding protein; GT 97.1 0.00032 1.1E-08 55.9 3.3 23 19-41 9-31 (301)
322 3clv_A RAB5 protein, putative; 97.1 0.0003 1E-08 51.3 3.0 23 19-41 9-31 (208)
323 3t1o_A Gliding protein MGLA; G 97.1 0.00032 1.1E-08 51.1 3.1 24 19-42 16-39 (198)
324 3b9p_A CG5977-PA, isoform A; A 97.1 0.00035 1.2E-08 54.9 3.5 26 16-41 53-78 (297)
325 1upt_A ARL1, ADP-ribosylation 97.0 0.00031 1.1E-08 50.0 2.9 23 18-40 8-30 (171)
326 2hxs_A RAB-26, RAS-related pro 97.0 0.00035 1.2E-08 50.1 3.2 23 19-41 8-30 (178)
327 3bc1_A RAS-related protein RAB 97.0 0.00032 1.1E-08 50.9 2.9 23 19-41 13-35 (195)
328 2xb4_A Adenylate kinase; ATP-b 97.0 0.00037 1.3E-08 52.8 3.4 23 19-41 2-24 (223)
329 2dby_A GTP-binding protein; GD 97.0 0.00029 1E-08 57.8 2.9 21 20-40 4-24 (368)
330 1r8s_A ADP-ribosylation factor 97.0 0.00035 1.2E-08 49.4 2.9 21 20-40 3-23 (164)
331 1a7j_A Phosphoribulokinase; tr 97.0 0.00019 6.4E-09 57.0 1.6 26 16-41 4-29 (290)
332 2y8e_A RAB-protein 6, GH09086P 97.0 0.00033 1.1E-08 50.1 2.8 22 19-40 16-37 (179)
333 3iev_A GTP-binding protein ERA 97.0 0.00038 1.3E-08 55.6 3.3 24 18-41 11-34 (308)
334 2f6r_A COA synthase, bifunctio 97.0 0.00037 1.3E-08 54.9 3.2 23 17-39 75-97 (281)
335 3iby_A Ferrous iron transport 97.0 0.00037 1.3E-08 54.2 3.2 23 19-41 3-25 (256)
336 3tlx_A Adenylate kinase 2; str 97.0 0.00047 1.6E-08 53.1 3.7 26 15-40 27-52 (243)
337 3con_A GTPase NRAS; structural 97.0 0.00036 1.2E-08 50.8 2.9 23 19-41 23-45 (190)
338 2a9k_A RAS-related protein RAL 97.0 0.00036 1.2E-08 50.3 2.9 23 19-41 20-42 (187)
339 1z0f_A RAB14, member RAS oncog 97.0 0.00038 1.3E-08 49.8 2.9 23 19-41 17-39 (179)
340 2g6b_A RAS-related protein RAB 97.0 0.00038 1.3E-08 50.0 2.9 23 19-41 12-34 (180)
341 3t5d_A Septin-7; GTP-binding p 97.0 0.00033 1.1E-08 54.8 2.7 23 19-41 10-32 (274)
342 3auy_A DNA double-strand break 97.0 4.6E-05 1.6E-09 62.5 -2.3 25 13-38 22-46 (371)
343 2xtp_A GTPase IMAP family memb 97.0 0.00043 1.5E-08 53.5 3.3 23 19-41 24-46 (260)
344 4ad8_A DNA repair protein RECN 97.0 2.7E-05 9.3E-10 66.6 -3.9 28 12-40 56-83 (517)
345 3cbq_A GTP-binding protein REM 97.0 0.0003 1E-08 52.0 2.3 22 19-40 25-46 (195)
346 2efe_B Small GTP-binding prote 97.0 0.00042 1.4E-08 49.8 3.0 23 19-41 14-36 (181)
347 3h4m_A Proteasome-activating n 97.0 0.00032 1.1E-08 54.8 2.5 30 12-41 46-75 (285)
348 2bme_A RAB4A, RAS-related prot 97.0 0.00039 1.3E-08 50.3 2.8 23 19-41 12-34 (186)
349 1vg8_A RAS-related protein RAB 97.0 0.00042 1.4E-08 51.1 3.0 23 19-41 10-32 (207)
350 2bov_A RAla, RAS-related prote 96.9 0.00042 1.4E-08 51.0 2.9 23 19-41 16-38 (206)
351 3cnl_A YLQF, putative uncharac 96.9 0.00053 1.8E-08 53.6 3.6 29 18-46 100-128 (262)
352 1nrj_B SR-beta, signal recogni 96.9 0.00047 1.6E-08 51.4 3.1 23 19-41 14-36 (218)
353 2fg5_A RAB-22B, RAS-related pr 96.9 0.00042 1.4E-08 50.8 2.8 23 19-41 25-47 (192)
354 2gf0_A GTP-binding protein DI- 96.9 0.00042 1.4E-08 50.7 2.8 22 19-40 10-31 (199)
355 2gf9_A RAS-related protein RAB 96.9 0.00044 1.5E-08 50.4 2.9 23 19-41 24-46 (189)
356 1ksh_A ARF-like protein 2; sma 96.9 0.00045 1.5E-08 50.1 2.9 27 15-41 16-42 (186)
357 1m7b_A RND3/RHOE small GTP-bin 96.9 0.0006 2.1E-08 49.5 3.6 23 19-41 9-31 (184)
358 1e4v_A Adenylate kinase; trans 96.9 0.00049 1.7E-08 51.6 3.2 23 19-41 2-24 (214)
359 1jbk_A CLPB protein; beta barr 96.9 0.00065 2.2E-08 48.9 3.7 27 15-41 41-67 (195)
360 3a1s_A Iron(II) transport prot 96.9 0.00053 1.8E-08 53.3 3.4 23 19-41 7-29 (258)
361 1l8q_A Chromosomal replication 96.9 0.00024 8.2E-09 56.7 1.4 33 16-48 36-68 (324)
362 3i8s_A Ferrous iron transport 96.9 0.00051 1.7E-08 53.9 3.3 23 19-41 5-27 (274)
363 2wsm_A Hydrogenase expression/ 96.9 0.00051 1.7E-08 51.4 3.1 25 17-41 30-54 (221)
364 2cjw_A GTP-binding protein GEM 96.9 0.00048 1.7E-08 50.7 2.9 22 19-40 8-29 (192)
365 1ypw_A Transitional endoplasmi 96.9 0.00022 7.6E-09 64.2 1.2 33 10-42 504-536 (806)
366 3tkl_A RAS-related protein RAB 96.9 0.00069 2.4E-08 49.4 3.7 23 19-41 18-40 (196)
367 3kkq_A RAS-related protein M-R 96.9 0.0007 2.4E-08 48.8 3.7 22 19-40 20-41 (183)
368 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00051 1.7E-08 49.5 2.9 22 19-40 7-28 (186)
369 3zvl_A Bifunctional polynucleo 96.9 0.00076 2.6E-08 56.1 4.3 28 13-40 254-281 (416)
370 1zbd_A Rabphilin-3A; G protein 96.9 0.00056 1.9E-08 50.4 3.1 23 19-41 10-32 (203)
371 3be4_A Adenylate kinase; malar 96.9 0.00058 2E-08 51.4 3.2 25 17-41 5-29 (217)
372 4edh_A DTMP kinase, thymidylat 96.9 0.00068 2.3E-08 51.4 3.6 29 15-43 4-32 (213)
373 3oes_A GTPase rhebl1; small GT 96.9 0.0005 1.7E-08 50.7 2.8 28 14-41 21-48 (201)
374 1z06_A RAS-related protein RAB 96.9 0.00055 1.9E-08 49.9 3.0 22 19-40 22-43 (189)
375 2il1_A RAB12; G-protein, GDP, 96.9 0.00051 1.7E-08 50.4 2.8 23 19-41 28-50 (192)
376 2o52_A RAS-related protein RAB 96.9 0.00055 1.9E-08 50.6 3.0 23 19-41 27-49 (200)
377 3t5g_A GTP-binding protein RHE 96.9 0.00053 1.8E-08 49.4 2.8 21 19-39 8-28 (181)
378 1jwy_B Dynamin A GTPase domain 96.9 0.00058 2E-08 54.1 3.2 24 19-42 26-49 (315)
379 2h57_A ADP-ribosylation factor 96.9 0.00042 1.4E-08 50.6 2.2 23 19-41 23-45 (190)
380 2ew1_A RAS-related protein RAB 96.9 0.00052 1.8E-08 51.1 2.8 22 19-40 28-49 (201)
381 4dhe_A Probable GTP-binding pr 96.9 0.00032 1.1E-08 52.5 1.6 25 17-41 29-53 (223)
382 3dz8_A RAS-related protein RAB 96.9 0.00054 1.8E-08 50.1 2.8 23 19-41 25-47 (191)
383 2v3c_C SRP54, signal recogniti 96.9 0.00018 6.3E-09 60.3 0.2 44 12-55 92-137 (432)
384 3v9p_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 52.4 2.9 29 14-42 22-50 (227)
385 2a5j_A RAS-related protein RAB 96.8 0.00057 2E-08 49.9 2.9 23 19-41 23-45 (191)
386 1ltq_A Polynucleotide kinase; 96.8 0.00064 2.2E-08 53.5 3.3 22 18-39 3-24 (301)
387 1zj6_A ADP-ribosylation factor 96.8 0.0006 2E-08 49.6 3.0 25 16-40 15-39 (187)
388 2bcg_Y Protein YP2, GTP-bindin 96.8 0.00056 1.9E-08 50.5 2.8 23 19-41 10-32 (206)
389 2atv_A RERG, RAS-like estrogen 96.8 0.00062 2.1E-08 50.0 3.0 25 16-40 27-51 (196)
390 2qu8_A Putative nucleolar GTP- 96.8 0.0006 2E-08 51.5 2.9 24 18-41 30-53 (228)
391 3bwd_D RAC-like GTP-binding pr 96.8 0.00062 2.1E-08 48.9 2.9 23 19-41 10-32 (182)
392 1zd9_A ADP-ribosylation factor 96.8 0.00061 2.1E-08 49.7 2.9 23 18-40 23-45 (188)
393 3d3q_A TRNA delta(2)-isopenten 96.8 0.00066 2.3E-08 55.1 3.3 25 18-42 8-32 (340)
394 3reg_A RHO-like small GTPase; 96.8 0.00062 2.1E-08 49.8 2.9 23 19-41 25-47 (194)
395 1ak2_A Adenylate kinase isoenz 96.8 0.00085 2.9E-08 51.1 3.7 27 15-41 14-40 (233)
396 4bas_A ADP-ribosylation factor 96.8 0.00062 2.1E-08 49.7 2.9 24 17-40 17-40 (199)
397 3lv8_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 52.0 3.5 29 15-43 25-53 (236)
398 1x3s_A RAS-related protein RAB 96.8 0.00064 2.2E-08 49.4 2.9 23 19-41 17-39 (195)
399 3cph_A RAS-related protein SEC 96.8 0.00065 2.2E-08 50.3 2.9 26 16-41 19-44 (213)
400 2h17_A ADP-ribosylation factor 96.8 0.00056 1.9E-08 49.5 2.5 22 19-40 23-44 (181)
401 3llu_A RAS-related GTP-binding 96.8 0.00073 2.5E-08 49.7 3.2 24 19-42 22-45 (196)
402 3dm5_A SRP54, signal recogniti 96.8 0.00075 2.6E-08 56.7 3.5 40 16-55 99-138 (443)
403 2f7s_A C25KG, RAS-related prot 96.8 0.00076 2.6E-08 50.2 3.2 24 19-42 27-50 (217)
404 2iwr_A Centaurin gamma 1; ANK 96.8 0.00052 1.8E-08 49.3 2.1 22 19-40 9-30 (178)
405 2j1l_A RHO-related GTP-binding 96.8 0.00074 2.5E-08 50.5 3.0 22 19-40 36-57 (214)
406 2fv8_A H6, RHO-related GTP-bin 96.8 0.00069 2.4E-08 50.3 2.8 23 19-41 27-49 (207)
407 4tmk_A Protein (thymidylate ki 96.8 0.00092 3.1E-08 50.7 3.5 28 16-43 2-29 (213)
408 2p5s_A RAS and EF-hand domain 96.8 0.00084 2.9E-08 49.4 3.3 33 9-41 20-52 (199)
409 2q3h_A RAS homolog gene family 96.8 0.00082 2.8E-08 49.4 3.1 25 17-41 20-44 (201)
410 1gwn_A RHO-related GTP-binding 96.7 0.00099 3.4E-08 49.6 3.6 23 19-41 30-52 (205)
411 3c5c_A RAS-like protein 12; GD 96.7 0.0008 2.7E-08 49.2 3.0 22 19-40 23-44 (187)
412 3umf_A Adenylate kinase; rossm 96.7 0.00097 3.3E-08 50.7 3.4 29 13-41 25-53 (217)
413 2h92_A Cytidylate kinase; ross 96.7 0.0008 2.7E-08 50.4 2.9 25 17-41 3-27 (219)
414 3def_A T7I23.11 protein; chlor 96.7 0.0009 3.1E-08 51.9 3.3 23 19-41 38-60 (262)
415 2fh5_B SR-beta, signal recogni 96.7 0.0011 3.9E-08 49.1 3.7 23 19-41 9-31 (214)
416 2p65_A Hypothetical protein PF 96.7 0.00084 2.9E-08 48.3 2.9 28 15-42 41-68 (187)
417 2aka_B Dynamin-1; fusion prote 96.7 0.00075 2.6E-08 52.9 2.8 24 19-42 28-51 (299)
418 2qmh_A HPR kinase/phosphorylas 96.7 0.001 3.4E-08 50.1 3.3 26 15-40 32-57 (205)
419 2gco_A H9, RHO-related GTP-bin 96.7 0.00082 2.8E-08 49.6 2.8 23 19-41 27-49 (201)
420 3p32_A Probable GTPase RV1496/ 96.7 0.0009 3.1E-08 54.4 3.2 39 16-54 78-116 (355)
421 1njg_A DNA polymerase III subu 96.7 0.001 3.5E-08 49.6 3.3 24 19-42 47-70 (250)
422 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0012 4E-08 50.7 3.7 28 14-41 36-63 (262)
423 2ocp_A DGK, deoxyguanosine kin 96.7 0.0011 3.7E-08 50.7 3.5 27 16-42 1-27 (241)
424 3n70_A Transport activator; si 96.7 0.0018 6.2E-08 45.6 4.4 41 15-55 22-62 (145)
425 3tmk_A Thymidylate kinase; pho 96.7 0.0011 3.9E-08 50.3 3.5 29 15-43 3-31 (216)
426 2fu5_C RAS-related protein RAB 96.7 0.00053 1.8E-08 49.5 1.6 23 19-41 10-32 (183)
427 1h65_A Chloroplast outer envel 96.7 0.00098 3.4E-08 51.9 3.2 23 19-41 41-63 (270)
428 3ld9_A DTMP kinase, thymidylat 96.7 0.0013 4.3E-08 50.3 3.7 29 15-43 19-47 (223)
429 2atx_A Small GTP binding prote 96.7 0.00092 3.1E-08 48.8 2.8 22 19-40 20-41 (194)
430 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.7E-08 53.5 3.4 24 18-41 6-29 (323)
431 3exa_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 53.1 3.6 25 17-41 3-27 (322)
432 2g3y_A GTP-binding protein GEM 96.7 0.0011 3.7E-08 50.0 3.2 22 19-40 39-60 (211)
433 2hf9_A Probable hydrogenase ni 96.6 0.001 3.5E-08 49.9 3.0 26 17-42 38-63 (226)
434 3a8t_A Adenylate isopentenyltr 96.6 0.0013 4.3E-08 53.4 3.7 26 16-41 39-64 (339)
435 4dcu_A GTP-binding protein ENG 96.6 0.00095 3.3E-08 56.1 2.8 22 19-40 25-46 (456)
436 2z4s_A Chromosomal replication 96.6 0.0009 3.1E-08 56.1 2.7 25 17-41 130-154 (440)
437 2i1q_A DNA repair and recombin 96.6 0.0013 4.4E-08 52.6 3.4 26 14-39 95-120 (322)
438 2hup_A RAS-related protein RAB 96.6 0.0011 3.8E-08 49.0 2.8 23 19-41 31-53 (201)
439 1w1w_A Structural maintenance 96.6 0.00017 5.9E-09 60.1 -1.9 35 11-45 20-54 (430)
440 1sxj_D Activator 1 41 kDa subu 96.6 0.001 3.5E-08 53.2 2.7 25 18-42 59-83 (353)
441 4djt_A GTP-binding nuclear pro 96.6 0.00048 1.6E-08 51.4 0.6 23 19-41 13-35 (218)
442 3cpj_B GTP-binding protein YPT 96.6 0.0013 4.3E-08 49.5 3.0 23 19-41 15-37 (223)
443 2x77_A ADP-ribosylation factor 96.5 0.00079 2.7E-08 49.0 1.7 25 16-40 21-45 (189)
444 4gzl_A RAS-related C3 botulinu 96.5 0.0013 4.3E-08 48.8 2.8 23 18-40 31-53 (204)
445 1p5z_B DCK, deoxycytidine kina 96.5 0.00089 3E-08 51.9 2.0 29 14-42 21-49 (263)
446 1ko7_A HPR kinase/phosphatase; 96.5 0.0012 4.2E-08 53.0 2.8 24 16-39 143-166 (314)
447 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 49.0 3.3 23 19-41 2-24 (206)
448 1u94_A RECA protein, recombina 96.5 0.001 3.4E-08 54.4 2.2 39 14-52 60-99 (356)
449 3bh0_A DNAB-like replicative h 96.5 0.0019 6.3E-08 51.7 3.8 27 14-40 65-91 (315)
450 3q3j_B RHO-related GTP-binding 96.5 0.0015 5E-08 48.9 2.9 22 19-40 29-50 (214)
451 2yc2_C IFT27, small RAB-relate 96.5 0.00052 1.8E-08 50.5 0.4 22 19-40 22-43 (208)
452 2orw_A Thymidine kinase; TMTK, 96.5 0.002 6.8E-08 47.5 3.4 24 16-39 2-26 (184)
453 2xau_A PRE-mRNA-splicing facto 96.5 0.00072 2.5E-08 60.6 1.2 31 14-44 106-136 (773)
454 3foz_A TRNA delta(2)-isopenten 96.4 0.0018 6.1E-08 52.0 3.4 25 17-41 10-34 (316)
455 3tqf_A HPR(Ser) kinase; transf 96.4 0.002 6.7E-08 47.5 3.2 26 14-39 13-38 (181)
456 3l0o_A Transcription terminati 96.4 0.0012 4.2E-08 54.6 2.3 34 8-41 165-199 (427)
457 2j0v_A RAC-like GTP-binding pr 96.4 0.0022 7.7E-08 47.4 3.6 23 19-41 11-33 (212)
458 4a1f_A DNAB helicase, replicat 96.4 0.0015 5.1E-08 53.0 2.6 39 14-52 43-81 (338)
459 3t15_A Ribulose bisphosphate c 96.4 0.0012 4E-08 52.3 2.0 28 14-41 33-60 (293)
460 2r62_A Cell division protease 96.4 0.0005 1.7E-08 53.2 -0.2 23 18-40 45-67 (268)
461 1puj_A YLQF, conserved hypothe 96.4 0.003 1E-07 49.8 4.1 26 17-42 120-145 (282)
462 2v1u_A Cell division control p 96.3 0.0016 5.4E-08 52.5 2.6 28 15-42 42-69 (387)
463 4hlc_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 47.9 3.5 33 17-50 2-34 (205)
464 2zts_A Putative uncharacterize 96.3 0.0028 9.5E-08 48.0 3.6 24 14-37 27-50 (251)
465 1wxq_A GTP-binding protein; st 96.3 0.002 6.9E-08 53.3 3.0 23 19-41 2-24 (397)
466 2ck3_D ATP synthase subunit be 96.3 0.0024 8.1E-08 54.1 3.3 34 8-41 143-177 (482)
467 2chg_A Replication factor C sm 96.2 0.0026 8.8E-08 46.8 3.1 23 19-41 40-62 (226)
468 3syl_A Protein CBBX; photosynt 96.2 0.0031 1.1E-07 49.5 3.6 27 15-41 65-91 (309)
469 3eph_A TRNA isopentenyltransfe 96.2 0.0029 9.9E-08 52.5 3.4 24 18-41 3-26 (409)
470 2hjg_A GTP-binding protein ENG 96.2 0.0023 8E-08 53.4 2.9 23 19-41 5-27 (436)
471 3gmt_A Adenylate kinase; ssgci 96.2 0.0029 9.9E-08 48.6 3.1 23 18-40 9-31 (230)
472 3uk6_A RUVB-like 2; hexameric 96.2 0.0036 1.2E-07 50.4 3.7 38 16-53 69-106 (368)
473 1yrb_A ATP(GTP)binding protein 96.1 0.004 1.4E-07 47.7 3.8 40 16-56 13-52 (262)
474 3gj0_A GTP-binding nuclear pro 96.1 0.0019 6.3E-08 48.3 1.8 22 19-40 17-39 (221)
475 3th5_A RAS-related C3 botulinu 95.1 0.00091 3.1E-08 49.4 0.0 23 18-40 31-53 (204)
476 3geh_A MNME, tRNA modification 96.1 0.0029 1E-07 53.4 2.8 26 15-40 222-247 (462)
477 2qby_B CDC6 homolog 3, cell di 96.1 0.004 1.4E-07 50.3 3.6 26 16-41 44-69 (384)
478 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.004 1.4E-07 49.9 3.5 27 15-41 43-69 (322)
479 2qgz_A Helicase loader, putati 96.0 0.0042 1.4E-07 49.5 3.5 26 17-42 152-177 (308)
480 2q6t_A DNAB replication FORK h 96.0 0.004 1.4E-07 52.1 3.6 29 14-42 197-225 (444)
481 2x2e_A Dynamin-1; nitration, h 96.0 0.002 6.9E-08 52.2 1.7 23 19-41 33-55 (353)
482 1d2n_A N-ethylmaleimide-sensit 96.0 0.0041 1.4E-07 48.2 3.4 28 14-41 61-88 (272)
483 3ec1_A YQEH GTPase; atnos1, at 96.0 0.0034 1.2E-07 51.4 2.9 25 16-40 161-185 (369)
484 2qpt_A EH domain-containing pr 96.0 0.0035 1.2E-07 54.0 3.0 26 16-41 64-89 (550)
485 3r7w_A Gtpase1, GTP-binding pr 96.0 0.0059 2E-07 48.5 4.1 24 17-40 3-26 (307)
486 3l0i_B RAS-related protein RAB 96.0 0.00061 2.1E-08 50.2 -1.6 23 19-41 35-57 (199)
487 1fx0_B ATP synthase beta chain 95.9 0.0031 1E-07 53.6 2.4 35 7-41 154-189 (498)
488 2bjv_A PSP operon transcriptio 95.9 0.0069 2.4E-07 46.7 4.3 39 15-53 27-66 (265)
489 1ofh_A ATP-dependent HSL prote 95.9 0.0043 1.5E-07 48.5 3.2 26 16-41 49-74 (310)
490 1f5n_A Interferon-induced guan 95.9 0.0037 1.2E-07 54.4 2.8 25 17-41 38-62 (592)
491 3hws_A ATP-dependent CLP prote 95.9 0.0042 1.4E-07 50.3 3.1 26 16-41 50-75 (363)
492 3d8b_A Fidgetin-like protein 1 95.9 0.0055 1.9E-07 49.7 3.7 27 15-41 115-141 (357)
493 3pvs_A Replication-associated 95.9 0.0041 1.4E-07 52.2 2.9 25 19-43 52-76 (447)
494 2j37_W Signal recognition part 95.9 0.005 1.7E-07 52.5 3.4 26 15-40 99-124 (504)
495 3sjy_A Translation initiation 95.9 0.005 1.7E-07 50.8 3.3 23 19-41 10-32 (403)
496 3eie_A Vacuolar protein sortin 95.8 0.006 2.1E-07 48.6 3.6 27 15-41 49-75 (322)
497 2qen_A Walker-type ATPase; unk 95.8 0.0057 1.9E-07 48.5 3.5 34 16-53 30-63 (350)
498 1lnz_A SPO0B-associated GTP-bi 95.8 0.0032 1.1E-07 51.1 1.9 22 19-40 160-181 (342)
499 3h2y_A GTPase family protein; 95.8 0.0039 1.3E-07 51.0 2.5 25 16-40 159-183 (368)
500 1x6v_B Bifunctional 3'-phospho 95.8 0.0056 1.9E-07 53.6 3.6 26 16-41 51-76 (630)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=3.6e-33 Score=229.58 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=131.7
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....... +. ....+++++|...++.
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~--~~-~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL--PV-RERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBC--CG-GGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccccc--ch-hhCCEEEEeCCCcCCC
Confidence 46787 4569999999999999999999999999999999999999998773210000 00 0123444444333332
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+..-|+..
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11 11246788999999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||||++++
T Consensus 174 r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 174 RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 9999887776666668999999999999999999999986
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=3e-33 Score=222.29 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=129.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++..... .. ....++++++...++
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~----~~-~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP----KA-LARTRAVMRQYSELAF 98 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH----HH-HHHHEEEECSCCCCCS
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH----HH-HhheEEEEecCCccCC
Confidence 46787 45699999999999999999999999999999999999999987653210 00 001123333321111
Q ss_pred ----------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecC------chhhc---cccccc
Q 036195 83 ----------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIG------EEEWW---NQLEWD 131 (183)
Q Consensus 83 ----------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~------~~~w~---~~l~~~ 131 (183)
.........++++.+++..+.++++.+|||||+|+ ++. +|+++ ||...-
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~L 178 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSAL 178 (266)
T ss_dssp CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSC
T ss_pred CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccC
Confidence 01112346788999999999999999999999983 355 88887 999999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+...+++++|||++++.+.||||++++
T Consensus 179 D~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~ 222 (266)
T 4g1u_C 179 DLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA 222 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence 99999999999988877666899999999999999999999996
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=5.2e-33 Score=228.86 Aligned_cols=167 Identities=16% Similarity=0.045 Sum_probs=135.1
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...... .... ....+++++|...++..
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~-~~~~-~r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES-ELTK-ARRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH-HHHH-HHTTEEEECSSCCCCTT
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH-HHHH-HhCcEEEEeCCCccCCC
Confidence 5787 456999999999999999999999999999999999999999987542100 0000 01245666665443332
Q ss_pred cc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 AL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 ~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.. ...+.++++.+++..+.++++.+|||||||+ ++.+|+.+ ||....|+.++
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 11 1135678999999999999999999999983 47889987 89999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+...+|+++|||++++.+.||||++++
T Consensus 200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~ 238 (366)
T 3tui_C 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS 238 (366)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999998887778999999999999999999999997
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=1.1e-32 Score=228.20 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=134.2
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... + ....+++++|...++.
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-----~--~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-----P--AERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-----G--GGSCEEEECTTCCCCT
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-----H--HHCCEEEEecCCcCCC
Confidence 457774 568999999999999999999999999999999999999998875321 0 0123455555444433
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~ 168 (381)
T 3rlf_A 89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (381)
T ss_dssp TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 211 1235678999999999999999999999983 47788886 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||||++++
T Consensus 169 ~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~ 208 (381)
T 3rlf_A 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208 (381)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999999999888879999999999999999999999986
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.8e-32 Score=214.24 Aligned_cols=167 Identities=13% Similarity=0.011 Sum_probs=127.9
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... .........+++++|...++..
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~-~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD-ELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH-HHHHHHHHHEEEECTTCCCCTT
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-HHHHHhhccEEEEecCCccCCC
Confidence 57884 56999999999999999999999999999999999999999876432100 0000011224444443322211
Q ss_pred ----------------------ccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 ----------------------ALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 ----------------------~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.....+.++++.+++.+. .++++.+|||||+|+ ++.+|+.+ ||...-|
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 011235678889999875 599999999999983 47788887 9999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+..+...+++++|||++. .+.||++++++
T Consensus 178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~ 219 (235)
T 3tif_A 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK 219 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEE
Confidence 9999999999988876668999999999995 58999999996
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.7e-32 Score=224.84 Aligned_cols=163 Identities=14% Similarity=0.028 Sum_probs=133.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... + ....+++++|...++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-----P--KDRNVGLVFQNWALYP 88 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----G--GGTTEEEECTTCCCCT
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-----H--hHCcEEEEecCcccCC
Confidence 35777 4568999999999999999999999999999999999999998775320 0 0123555555443332
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++..+.++++.+|||||+|+ +..+|+.+ ||+...|+..
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (362)
T 2it1_A 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168 (362)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 211 1235678999999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||++++++
T Consensus 169 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 208 (362)
T 2it1_A 169 RLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIR 208 (362)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 9999999998877778899999999999999999999986
No 7
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=4e-32 Score=214.79 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=127.9
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC- 82 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~- 82 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++..... .......+++++|...++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~l~~ 95 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP----AELYHYGIVRTFQTPQPLK 95 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH----HHHHHHTEEECCCCCGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHhCCEEEEccCCccCC
Confidence 35787 55699999999999999999999999999999999999999987642100 000001122222211110
Q ss_pred -------------------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc
Q 036195 83 -------------------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW 125 (183)
Q Consensus 83 -------------------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~ 125 (183)
.......+.++++.+++..+.++++.+|||||+|+ ++.+|+.+
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll 175 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI 175 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 00011245678999999999999999999999983 37888887
Q ss_pred ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+..-|+..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 176 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 176 VMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999888655 8899999999999999999999986
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=4.4e-32 Score=210.59 Aligned_cols=167 Identities=14% Similarity=-0.003 Sum_probs=129.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK-ELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH-HHHHHHHHHEEEECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH-HHHHHHhCcEEEEecCcccCC
Confidence 467874 56899999999999999999999999999999999999999876431000 000001123555555433322
Q ss_pred cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
.. ....+.++++.+++..+.++++.+|||||+|+ +..+|+.+ ||+..-|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 10 01234678899999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+++++|||++.+ +.||++++++
T Consensus 176 ~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~ 213 (224)
T 2pcj_A 176 TKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMK 213 (224)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEE
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEE
Confidence 99999999888666 88999999999987 8999999986
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=2.2e-32 Score=218.13 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=129.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC 82 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~ 82 (183)
++|++ |+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..... .... ....+++++|.. .++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~--~~~~-~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK--GIMK-LRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH--HHHH-HHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc--cHHH-HhCcEEEEEcCcccccc
Confidence 47884 5699999999999999999999999999999999999999987731100 0000 012344444432 111
Q ss_pred c------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 83 H------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 83 ~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. ......+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+..
T Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~ 178 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 0 0011235678999999999999999999999983 48889887 8999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+|+++|||++++.+.||||++++
T Consensus 179 ~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999988863338899999999999999999999996
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=3.4e-32 Score=215.81 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=129.7
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ...... ...+++++|...++.
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~-~~~~~~-~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK-D-TNLNKV-REEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSST-T-CCHHHH-HHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCc-c-ccHHHH-hCcEEEEeCCCcCCC
Confidence 45787 456899999999999999999999999999999999999999876300 0 000000 122444444322221
Q ss_pred c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
. .....+.++++.+++..+.++++.+|||||+|+ +..+|+.+ ||+..-|+.
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~ 193 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 1 001235678999999999999999999999983 47888887 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 194 ~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~ 233 (263)
T 2olj_A 194 MVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMD 233 (263)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999999999888666 8899999999999999999999996
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=3.8e-32 Score=223.37 Aligned_cols=162 Identities=10% Similarity=0.036 Sum_probs=131.7
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... + ....+++++|...++..
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~~ 101 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-----P--QKRNVGLVFQNYALFQH 101 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-----G--GGSSEEEECGGGCCCTT
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-----h--hhCcEEEEecCcccCCC
Confidence 5787 5568999999999999999999999999999999999999998764310 0 01234444443333221
Q ss_pred c-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 A-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 ~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
. ....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+
T Consensus 102 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 0 01235678999999999999999999999983 47888887 99999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+...+++++|||++++++.||++++++
T Consensus 182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 220 (355)
T 1z47_A 182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH 220 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999999998877778899999999999999999999986
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=4.9e-32 Score=223.13 Aligned_cols=163 Identities=11% Similarity=0.039 Sum_probs=132.4
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... + ....+++++|...++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~ 88 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-----P--KYREVGMVFQNYALYP 88 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----G--GGTTEEEECSSCCCCT
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-----h--hhCcEEEEecCcccCC
Confidence 35777 4568999999999999999999999999999999999999998764320 0 0123444444332222
Q ss_pred c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+..-|+..
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (359)
T 2yyz_A 89 HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168 (359)
T ss_dssp TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1 112246788999999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+...+..+..+...+++++|||++++++.||++++++
T Consensus 169 r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~ 208 (359)
T 2yyz_A 169 RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN 208 (359)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 9999999988877778899999999999999999999986
No 13
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=6.7e-32 Score=211.54 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=128.6
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
.+|+ ||++++ |++||+||||||||||+|+|+|+++|++|+|.++|.++.... .. ...++++++...++..
T Consensus 13 ~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~-~~~i~~v~q~~~l~~~ 84 (240)
T 2onk_A 13 NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP------PE-RRGIGFVPQDYALFPH 84 (240)
T ss_dssp TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC------TT-TSCCBCCCSSCCCCTT
T ss_pred CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc------hh-hCcEEEEcCCCccCCC
Confidence 3576 456899 999999999999999999999999999999999998764210 00 1234444443322211
Q ss_pred c-----------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 85 A-----------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 85 ~-----------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
. ....+.++++.+++.++.++++.+|||||+|+ ++.+|+.+ ||+..-|+..+..
T Consensus 85 ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~ 164 (240)
T 2onk_A 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp SCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred CcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 01235678999999999999999999999983 48888887 9999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..++..+..+...+|+++|||++++.+.||++++++
T Consensus 165 ~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~ 201 (240)
T 2onk_A 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVML 201 (240)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999988766568899999999999999999999997
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=5.8e-32 Score=214.44 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=130.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---------cccccchheeehhhhcc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---------KISVCSFILIRRAYFFK 74 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------~~~~~~~~~l~~~~lg~ 74 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. ......... ....+++
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 97 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRL-LRTRLTM 97 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHH-HHHHEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHH-HhcceEE
Confidence 46787 45689999999999999999999999999999999999999987641 000000000 0123445
Q ss_pred CCCCccccccc--------------------cchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc--
Q 036195 75 LPNLKSICHEA--------------------LAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 75 lp~l~~l~~~~--------------------~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~-- 125 (183)
++|...++... ....+.++++.+++..+ .++++.+|||||+|+ ++.+|+.+
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55433222110 01235678999999998 999999999999983 47888887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
||+..-|+..+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus 178 DEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 178 DEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999888666 8899999999999999999999986
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=7.5e-32 Score=222.93 Aligned_cols=162 Identities=7% Similarity=-0.013 Sum_probs=129.4
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... +. ...+++++|...++..
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~~--~r~ig~v~Q~~~l~~~ 97 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-----PK--DRNISMVFQSYAVWPH 97 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----GG--GGTEEEEEC------C
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-----hh--hCcEEEEecCcccCCC
Confidence 5777 4568999999999999999999999999999999999999998764310 00 1223333333222211
Q ss_pred -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195 85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK 136 (183)
Q Consensus 85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~ 136 (183)
.....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+
T Consensus 98 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 011246788999999999999999999999983 47888887 99999999999
Q ss_pred cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..++..+..+...+++++|||++++++.||++++++
T Consensus 178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 216 (372)
T 1v43_A 178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 216 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999998877778899999999999999999999986
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=7e-32 Score=213.29 Aligned_cols=163 Identities=15% Similarity=0.054 Sum_probs=129.4
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... .. ....++++++...++.
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~-----~~-~~~~i~~v~q~~~l~~ 101 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-----HE-VRKLISYLPEEAGAYR 101 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----HH-HHTTEEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-----HH-HhhcEEEEcCCCCCCC
Confidence 45787 4568999999999999999999999999999999999999998764310 00 0123445554332222
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 102 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 181 (256)
T 1vpl_A 102 NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181 (256)
T ss_dssp TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHH
Confidence 100 1134678899999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus 182 ~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~ 220 (256)
T 1vpl_A 182 AREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIH 220 (256)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEE
Confidence 99999999887644 7899999999999999999999986
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=6.5e-32 Score=221.64 Aligned_cols=161 Identities=10% Similarity=0.013 Sum_probs=132.3
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
+|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++... +. ....+++++|...++...
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~------~~-~~r~ig~v~Q~~~l~~~l 87 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL------SP-EKHDIAFVYQNYSLFPHM 87 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS------CH-HHHTCEEECTTCCCCTTS
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC------ch-hhCcEEEEecCcccCCCC
Confidence 777 456899999999999999999999999999999999999999876531 00 012355555544333221
Q ss_pred c----------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 86 L----------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 86 ~----------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
. ...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+.
T Consensus 88 tv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~ 167 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167 (348)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 1 1345678999999999999999999999983 47888887 999999999999999
Q ss_pred cceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.++..+..+...+++++|||++++++.||++++++
T Consensus 168 ~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~ 202 (348)
T 3d31_A 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202 (348)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEES
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99998877778899999999999999999999985
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=1.9e-31 Score=211.87 Aligned_cols=161 Identities=13% Similarity=0.009 Sum_probs=127.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--c-
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--S- 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~- 80 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... . ....++++++.. .
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-------~-~~~~i~~v~q~~~~~~ 91 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-------E-IRRNIGIAFQYPEDQF 91 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-------H-HGGGEEEECSSGGGGC
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-------H-hhhhEEEEeccchhhc
Confidence 457874 56899999999999999999999999999999999999999765321 0 001122222210 0
Q ss_pred ----------------ccccccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195 81 ----------------ICHEALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE 133 (183)
Q Consensus 81 ----------------l~~~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~ 133 (183)
.........+.++++.+++. ++.++++.+|||||+|+ ++.+|+.+ ||+...|+
T Consensus 92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 171 (266)
T 2yz2_A 92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171 (266)
T ss_dssp CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCH
Confidence 11111123467889999999 99999999999999983 47888887 99999999
Q ss_pred ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus 172 ~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~ 212 (266)
T 2yz2_A 172 EGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLE 212 (266)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999887666 7899999999999999999999996
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=6.5e-32 Score=222.18 Aligned_cols=166 Identities=8% Similarity=-0.014 Sum_probs=130.9
Q ss_pred ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195 8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE- 84 (183)
Q Consensus 8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~- 84 (183)
+|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....... .+. ....+++++|...++..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~-~~~-~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI-VPP-EDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES-SCG-GGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc-CCh-hhCCEEEEeCCCccCCCC
Confidence 787 4568999999999999999999999999999999999999998764310000 000 01223444443222221
Q ss_pred ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
.....+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+.
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~ 177 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 011245788999999999999999999999983 47888887 999999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+...+..+..+...+++++|||++++++.|||+++++
T Consensus 178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~ 215 (353)
T 1oxx_K 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999998877778999999999999999999999986
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=1.8e-31 Score=213.34 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=126.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--cc--------cccc-c-----h---
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KK--------ISVC-S-----F--- 64 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~--------~~~~-~-----~--- 64 (183)
+++|++ |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++. .. ..+. + +
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG 113 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence 467875 458999999999999999999999999999999999999998764 21 0000 0 0
Q ss_pred -heeehhhhccCCCCccccc---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 65 -ILIRRAYFFKLPNLKSICH---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 65 -~~l~~~~lg~lp~l~~l~~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
++.+.+.++..+.. .++. ......+.++++.+++..+.++++.+|||||+|+ +..+|+.+ ||+...
T Consensus 114 ltv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 114 ERVIDVVISGAFKSI-GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp SBHHHHHHTTC----------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCHHHHHHhhhhhcc-ccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 11111111110000 0000 0111245678999999999999999999999983 47888887 999999
Q ss_pred CcccccccccceeecCcccccCC--CCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISI--PQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+..+ ..+| +++|||++++.+.||++++++
T Consensus 193 D~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 193 DFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp CHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999887666 7889 999999999999999999996
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=1.2e-31 Score=221.89 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=133.7
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.........+. ....+++++|...++.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-~~r~ig~v~Q~~~l~~ 94 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-KDRDIAMVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-GGSSEEEECSCCCCCT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-hHCCEEEEeCCCccCC
Confidence 35787 45689999999999999999999999999999999999999987653100000010 1134556565444433
Q ss_pred ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
... ...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 211 1235678999999999999999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+..+...+++++|||++++++.||++++++
T Consensus 175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 214 (372)
T 1g29_1 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe
Confidence 9999999988877778899999999999999999999986
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=9.6e-32 Score=210.67 Aligned_cols=165 Identities=12% Similarity=0.020 Sum_probs=126.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ........++++++...++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP----AHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHHHHHTTEEEECSSCCCCT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----HHHHHhCCEEEEecCCccCC
Confidence 45787 4568999999999999999999999999999999999999998764310 00000112344443322211
Q ss_pred c------------------ccchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195 84 E------------------ALAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT 135 (183)
Q Consensus 84 ~------------------~~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~ 135 (183)
. .......++++.+ ++..+.++++.+|||||+|+ ++.+|+.+ ||+...|+..
T Consensus 95 ~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 1 0012345677888 48888899999999999983 47888887 9999999999
Q ss_pred ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..++..+.. ...+++++|||++.+.+.||++++++
T Consensus 175 ~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 175 VSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999988755 47899999999999999999999986
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=2.4e-31 Score=209.44 Aligned_cols=162 Identities=15% Similarity=0.020 Sum_probs=128.0
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ ||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.... ... ....++++++...++..
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~~~~~ 87 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----ATK-LALHRAYLSQQQTPPFA 87 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC----HHH-HHHHEEEECSCCCCCTT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC----HHH-HhceEEEECCCCccCCC
Confidence 6777 4568999999999999999999999999999999 99999998764210 000 01123444443222111
Q ss_pred --------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh-------hc---ccccccCcc
Q 036195 85 --------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE-------WW---NQLEWDDEA 134 (183)
Q Consensus 85 --------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~-------w~---~~l~~~d~~ 134 (183)
.......++++.+++..+.++++.+|||||+|+ ++.+|+ ++ ||....|+.
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~ 167 (249)
T 2qi9_C 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167 (249)
T ss_dssp CBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred CcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence 012346788999999999999999999999983 377888 76 999999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus 168 ~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~ 207 (249)
T 2qi9_C 168 QQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLK 207 (249)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999887655 7899999999999999999999986
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=3e-31 Score=204.55 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=126.1
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++++...++..
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~----------~~~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----------VKGKIFFLPEEIIVPRK 92 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG----------GGGGEEEECSSCCCCTT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhh----------hcCcEEEEeCCCcCCCC
Confidence 57874 5689999999999999999999999999999999999999976530 01123333332211110
Q ss_pred -----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195 85 -----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV 138 (183)
Q Consensus 85 -----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~ 138 (183)
.......++++.+++..+ ++++.+|||||+|+ ++.+|+.+ ||+...|+..+..
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~ 171 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171 (214)
T ss_dssp SBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHH
T ss_pred CCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence 112345778999999988 99999999999983 47888887 9999999999999
Q ss_pred cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195 139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV 176 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (183)
+..++..+..+ ..+|+++|||++.+...+|++++++-
T Consensus 172 l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~ 208 (214)
T 1sgw_A 172 VLKSILEILKE-KGIVIISSREELSYCDVNENLHKYST 208 (214)
T ss_dssp HHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCC
Confidence 99999877654 78999999999999999999998763
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=1.1e-30 Score=205.80 Aligned_cols=165 Identities=12% Similarity=-0.051 Sum_probs=121.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|+ ||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.... ........+++++|...+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~ 91 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS----PDERARKGLFLAFQYPVE 91 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC----HHHHHHTTBCCCCCCCC-
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC----HHHHHhCcEEEeccCCcc
Confidence 46787 456899999999999999999999999999 7899999999998764310 000001123344443222
Q ss_pred cccc----------------------cchHHHHHHHHcCC-CCccCCCCCC-CChhhhhe------ecCchhhc---ccc
Q 036195 82 CHEA----------------------LAFPCLERIYVHGC-PSLRKLPFSL-ESGKRNGV------LIGEEEWW---NQL 128 (183)
Q Consensus 82 ~~~~----------------------~~~~~l~vLe~l~L-~~L~~~~~~~-LSgGqk~~------i~~~~~w~---~~l 128 (183)
+... ......++++.+++ ..+.++++.+ |||||+|+ +..+|+.+ ||.
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 92 VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1110 01234567888999 5888999999 99999983 37788887 999
Q ss_pred cccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195 129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID 175 (183)
Q Consensus 129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (183)
..-|+..+..+..++..+..+ ..+|+++|||++.+... ||++++++
T Consensus 172 s~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 172 SGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMM 218 (250)
T ss_dssp GTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGTSCCSEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCCEEEEEE
Confidence 999999999999999887654 78999999999999888 69999986
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=2.2e-30 Score=206.22 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=123.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ... ....+++++|...++.
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~----~~~-~~~~i~~v~Q~~~l~~ 106 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD----HHY-LHTQVAAVGQEPLLFG 106 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC----HHH-HHHHEEEECSSCCCCS
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC----HHH-HhccEEEEecCCcccc
Confidence 468875 568999999999999999999999999999999999999998764310 000 0122444444332221
Q ss_pred c------------ccc-h---------HHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 E------------ALA-F---------PCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 ~------------~~~-~---------~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
. ... . ...+.++.+ ++....++++.+|||||+|+ ++.+|+.+ ||+..
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 186 (271)
T 2ixe_A 107 RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186 (271)
T ss_dssp SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 0 000 1 112345555 67777888999999999983 47888887 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+..+..+..++..+..+...+++++|||++.+.. ||++++++
T Consensus 187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~ 230 (271)
T 2ixe_A 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLK 230 (271)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence 999999999999988866558899999999998765 99999986
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=2e-30 Score=204.65 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=125.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.+... -.+....+...+..+.+.++..+....
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 97 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT 97 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCT
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccc
Confidence 357874 568999999999999999999999999999999999974210 011111111122233332221111000
Q ss_pred --ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcc
Q 036195 81 --ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ 149 (183)
Q Consensus 81 --l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~ 149 (183)
...........++++.+++.++.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+..++..+..+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 98 FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0011112346788999999999999999999999983 47888887 999999999999999999887666
Q ss_pred cccCCCCCCceeeeeecccceEEEEe
Q 036195 150 TVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+|+++|||++.+.+.||++++++
T Consensus 178 ~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 178 QNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 57899999999999999999999986
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=5.2e-30 Score=203.72 Aligned_cols=165 Identities=14% Similarity=-0.042 Sum_probs=124.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.... ........++++++...+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~----~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS----PEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC----HHHHHHHTEEEECSSCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC----HHHHhhCCEEEEccCccc
Confidence 467874 56899999999999999999999999999 4789999999998764310 000001123333332211
Q ss_pred ccc--------------------------ccchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195 82 CHE--------------------------ALAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW-- 125 (183)
Q Consensus 82 ~~~--------------------------~~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~-- 125 (183)
+.. .....+.++++.+++. .+.++++. +|||||+|+ ++.+|+.+
T Consensus 109 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlL 188 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL 188 (267)
T ss_dssp CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 110 0012356788999996 57888887 599999983 37788887
Q ss_pred -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195 126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID 175 (183)
Q Consensus 126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 175 (183)
||+...|+..+..+..++..+..+ ..+|+++|||++++... ||++++++
T Consensus 189 DEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 189 DESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLY 239 (267)
T ss_dssp ESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEE
Confidence 999999999999999999888655 78999999999999886 99999986
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=1.1e-29 Score=199.28 Aligned_cols=162 Identities=13% Similarity=0.048 Sum_probs=121.6
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .. ....++++++...++.
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~-~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL----EN-WRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC----SC-CTTTCCEECCSSCCCC
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HH-HHhhEEEEcCCCcccc
Confidence 457874 5689999999999999999999999999999999999999987643110 00 0122444444322221
Q ss_pred -------------cccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 -------------EALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 -------------~~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
........++++.+++.++.+ .++.+|||||+|+ ++.+|+.+ ||+..
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~ 169 (243)
T 1mv5_A 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169 (243)
T ss_dssp EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 111223567778888766554 3467999999983 37788886 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+..+..+..++..+. + ..+++++|||++.+. .||++++++
T Consensus 170 LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~ 211 (243)
T 1mv5_A 170 LDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIE 211 (243)
T ss_dssp SCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEE
Confidence 99999999999988775 4 789999999999775 599999997
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=6.1e-30 Score=201.20 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=120.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+ ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.... ...+ ...++++++...++.
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~ 96 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWL-RRQVGVVLQDNVLLN 96 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHHH-HHHEEEECSSCCCTT
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----HHHH-HhcEEEEeCCCcccc
Confidence 45787 4568999999999999999999999999999999999999998764310 0000 123445444332221
Q ss_pred c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. .......++++.+++..+ .+.++.+|||||+|+ ++.+|+.+ ||....
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~L 176 (247)
T 2ff7_A 97 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176 (247)
T ss_dssp SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0 111234556666666543 344568999999983 47888887 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+..+..+..++..+. + ..+++++|||++.+. .||++++++
T Consensus 177 D~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~ 217 (247)
T 2ff7_A 177 DYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVME 217 (247)
T ss_dssp CHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 9999999999998773 4 789999999999875 499999986
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.6e-29 Score=199.23 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=124.2
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cCCCCccc-
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KLPNLKSI- 81 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~lp~l~~l- 81 (183)
+++|+ ||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++... .. ...++ ++++...+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~------~~--~~~i~~~v~Q~~~l~ 87 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI------RN--YIRYSTNLPEAYEIG 87 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC------SC--CTTEEECCGGGSCTT
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch------HH--hhheEEEeCCCCccC
Confidence 46787 45699 9999999999999999999999999 9999999999776421 00 12344 44443222
Q ss_pred ---cc---------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 82 ---CH---------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 82 ---~~---------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
.. ........++++.+++. .+.++++.+|||||+|+ ++.+|+.+ ||+...|+..+..+
T Consensus 88 ~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 167 (263)
T 2pjz_A 88 VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167 (263)
T ss_dssp SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHH
T ss_pred CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHH
Confidence 00 11122456789999998 99999999999999983 47888887 99999999999999
Q ss_pred ccceeecCcccccCCCCCCceeeeeecccc-eEEEEe
Q 036195 140 SSKLIITTPQTVISIPQPSYTYEATIRPRY-ELICID 175 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 175 (183)
..++..+.. +++++|||++.+.+.|| ++++++
T Consensus 168 ~~~L~~~~~----tviivtHd~~~~~~~~d~~i~~l~ 200 (263)
T 2pjz_A 168 SRYIKEYGK----EGILVTHELDMLNLYKEYKAYFLV 200 (263)
T ss_dssp HHHHHHSCS----EEEEEESCGGGGGGCTTSEEEEEE
T ss_pred HHHHHHhcC----cEEEEEcCHHHHHHhcCceEEEEE
Confidence 998887654 89999999999999999 999986
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=2.1e-28 Score=193.81 Aligned_cols=160 Identities=14% Similarity=0.032 Sum_probs=117.6
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|+ ||++++||+++|+||||||||||+|+|+|+++| +|+|.++|.++.... ... ....+++++|...++..
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~----~~~-~~~~i~~v~Q~~~l~~~ 107 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN----RNS-IRSIIGIVPQDTILFNE 107 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC----HHH-HHTTEEEECSSCCCCSE
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC----HHH-HhccEEEEcCCCccccc
Confidence 5887 456999999999999999999999999999987 899999998764310 000 01234455544332210
Q ss_pred ------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195 85 ------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 85 ------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
.......++++.+++..+ .+.++.+|||||+|+ ++.+|+.+ ||+...|
T Consensus 108 tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 187 (260)
T 2ghi_A 108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187 (260)
T ss_dssp EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC
T ss_pred CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 011234455666665332 245678999999983 37788886 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+..++..+.. ..+++++|||++.+. .||++++++
T Consensus 188 ~~~~~~i~~~l~~l~~--~~tviivtH~~~~~~-~~d~i~~l~ 227 (260)
T 2ghi_A 188 SKTEYLFQKAVEDLRK--NRTLIIIAHRLSTIS-SAESIILLN 227 (260)
T ss_dssp HHHHHHHHHHHHHHTT--TSEEEEECSSGGGST-TCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHH-hCCEEEEEE
Confidence 9999999999887753 578999999999875 599999986
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=4.7e-29 Score=201.51 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=120.8
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+ ...+++++|...++.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~----~~~~-r~~i~~v~Q~~~lf~ 141 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT----QASL-RSHIGVVPQDTVLFN 141 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC----HHHH-HHTEEEECSSCCCCS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC----HHHH-hcceEEEecCCccCc
Confidence 467875 468999999999999999999999999999999999999999876421 1111 134566666554442
Q ss_pred c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. .......++++.+++ ......+...|||||+|+ +..+|+.+ ||....
T Consensus 142 ~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L 221 (306)
T 3nh6_A 142 DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221 (306)
T ss_dssp EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 1 111233445555444 334456678999999984 36677776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+..+.. .+++++++|++..+.. ||+|+++|
T Consensus 222 D~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~ 262 (306)
T 3nh6_A 222 DTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIK 262 (306)
T ss_dssp CHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEE
Confidence 99999999888876643 4789999999999876 99999997
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=8.1e-28 Score=187.09 Aligned_cols=157 Identities=10% Similarity=0.030 Sum_probs=107.9
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.- .+.. ..+..+..+.+.++. .
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~-~~~~~tv~enl~~~~--~--- 94 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFS-WIMPGTIKENIIFGV--S--- 94 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSC-CCCSBCHHHHHHTTS--C---
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCC-cccCCCHHHHhhccC--C---
Confidence 468874 5689999999999999999999999999999999999998731 0110 001112222221110 0
Q ss_pred ccccccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 81 ICHEALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
.......++++.+++.. ..+.++.+|||||+|+ +..+|+.+ ||+...|+..+..+.
T Consensus 95 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 170 (229)
T 2pze_A 95 ----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170 (229)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHH
T ss_pred ----cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHH
Confidence 00111223344444322 2234568999999983 47788887 899999999999988
Q ss_pred cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.. +.... + ..+++++|||++.+. .||++++++
T Consensus 171 ~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~ 203 (229)
T 2pze_A 171 ESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILH 203 (229)
T ss_dssp HHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEE
T ss_pred HHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEE
Confidence 75 44443 3 578999999999865 599999986
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.3e-28 Score=201.57 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=125.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.... ... ....+++++|...++.
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~----~~~-~rr~ig~v~Q~~~lf~ 107 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT----LEQ-WRKAFGVIPQKVFIFS 107 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC----HHH-HHHTEEEESCCCCCCS
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC----hHH-HhCCEEEEcCCcccCc
Confidence 467875 5699999999999999999999999999998 9999999999875421 111 1123555555443332
Q ss_pred c-----------ccchHHHHHHHHcCCCCccCCCCCC-----------CChhhhhe------ecCchhhc---ccccccC
Q 036195 84 E-----------ALAFPCLERIYVHGCPSLRKLPFSL-----------ESGKRNGV------LIGEEEWW---NQLEWDD 132 (183)
Q Consensus 84 ~-----------~~~~~~l~vLe~l~L~~L~~~~~~~-----------LSgGqk~~------i~~~~~w~---~~l~~~d 132 (183)
. .....+.++++.+++..+.++++.+ |||||+|+ +..+|+++ ||+...|
T Consensus 108 ~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD 187 (390)
T 3gd7_A 108 GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187 (390)
T ss_dssp EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSC
T ss_pred cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 1 1123467889999999999998888 99999983 47788887 8999999
Q ss_pred cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
+..+..+...+..+. ...++++++||++ .+..|||+++++
T Consensus 188 ~~~~~~l~~~l~~~~--~~~tvi~vtHd~e-~~~~aDri~vl~ 227 (390)
T 3gd7_A 188 PVTYQIIRRTLKQAF--ADCTVILCEARIE-AMLECDQFLVIE 227 (390)
T ss_dssp HHHHHHHHHHHHTTT--TTSCEEEECSSSG-GGTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEEEcCHH-HHHhCCEEEEEE
Confidence 999999998887653 3588999999986 556699999986
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=1.6e-27 Score=186.41 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=108.8
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
+++|+ ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.- .+.. .....+..+.+.++. .
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~--~--- 91 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGC--Q--- 91 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTS--C---
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCcc--c---
Confidence 46787 45699999999999999999999999999999999999998731 1110 011111222221111 0
Q ss_pred ccccccchHHHHHHHHcCC------C-----CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195 81 ICHEALAFPCLERIYVHGC------P-----SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS 140 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L------~-----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~ 140 (183)
.. .....++++.+++ . ...+.++.+|||||+|+ +..+|+.+ ||+...|+..+..+.
T Consensus 92 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 167 (237)
T 2cbz_A 92 LE----EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167 (237)
T ss_dssp CC----TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred cC----HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 00 1112233333322 1 13467889999999983 37788886 899999999998888
Q ss_pred cceeec-CcccccCCCCCCceeeeeecccceEEEEe
Q 036195 141 SKLIIT-TPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 141 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+... ......+++++|||++.+ +.||++++++
T Consensus 168 ~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~ 202 (237)
T 2cbz_A 168 ENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMS 202 (237)
T ss_dssp HHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEE
T ss_pred HHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEe
Confidence 877421 112267899999999986 5799999986
No 37
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=7.8e-28 Score=207.55 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=123.8
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc----ccchheeehhhhccCCCCcccccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS----VCSFILIRRAYFFKLPNLKSICHEAL 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~----~~~~~~l~~~~lg~lp~l~~l~~~~~ 86 (183)
++++++||++||+||||||||||+|+|+|+++|++|+|.+.+..+.-... ....+..+.+.... . ......
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~----~~~~~~ 362 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENAS-K----DALSTS 362 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHC-S----STTCTT
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhh-h----hccchh
Confidence 66789999999999999999999999999999999999987654431100 00011111111110 0 000112
Q ss_pred chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.....++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.++..+..++..+..+...+|+++
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~v 442 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2345778889999999999999999999983 37788886 99999999999999999998877778899999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++.+.||||++++
T Consensus 443 sHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 443 DHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp CSCHHHHHHHCSEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEe
Confidence 999999999999999997
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=1e-26 Score=202.52 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=121.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~ 430 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK----LTNL-RRHFALVSQNVHLFN 430 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC----HHHH-hcCeEEEcCCCcccc
Confidence 4688855 58999999999999999999999999999999999999998775321 0000 123444454332221
Q ss_pred -------------cccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 -------------EALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 -------------~~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
.....+..++++.+++.++.+ .+..+|||||||+ +..+|+.+ ||...
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~ 510 (582)
T 3b5x_A 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510 (582)
T ss_pred ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 111234566777777654433 3457899999984 37788876 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|+.++..+...+..+.. .++++++||+++.+. .||+++++|
T Consensus 511 LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b5x_A 511 LDTESERAIQAALDELQK--NKTVLVIAHRLSTIE-QADEILVVD 552 (582)
T ss_pred CCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEE
Confidence 999999999998887643 788999999999765 799999997
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=7.3e-27 Score=187.52 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=106.2
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCc
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLK 79 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~ 79 (183)
++++|++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.- .+.. ..+..+..+.+. +. .
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~l~~~tv~enl~-~~-~--- 123 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS-WIMPGTIKENII-GV-S--- 123 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSC-CCCSSBHHHHHH-TT-C---
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCC-ccCcccHHHHhh-Cc-c---
Confidence 3567874 5689999999999999999999999999999999999998731 0110 001111122111 10 0
Q ss_pred cccccccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195 80 SICHEALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF 139 (183)
Q Consensus 80 ~l~~~~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~ 139 (183)
. ......++++.+++... .+.++.+|||||+|+ ++.+|+.+ ||+...|+..+..+
T Consensus 124 --~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 124 --Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp --C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred --c---chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 0 01112334444444321 233468999999983 47888887 89999999999999
Q ss_pred ccc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 140 SSK-LIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 140 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+ +..+. + ..+|+++|||++.+ ..||++++++
T Consensus 199 ~~~ll~~~~-~-~~tviivtHd~~~~-~~~d~i~~l~ 232 (290)
T 2bbs_A 199 FESCVCKLM-A-NKTRILVTSKMEHL-KKADKILILH 232 (290)
T ss_dssp HHHCCCCCT-T-TSEEEEECCCHHHH-HHSSEEEEEE
T ss_pred HHHHHHHhh-C-CCEEEEEecCHHHH-HcCCEEEEEE
Confidence 875 44443 3 67899999999887 4699999986
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=1.3e-26 Score=201.89 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=120.7
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~ 430 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT----LASL-RNQVALVSQNVHLFN 430 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC----HHHH-HHTEEEECSSCCCCS
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC----HHHH-HhhCeEEccCCcCCC
Confidence 468885 458999999999999999999999999999999999999998775321 0011 123455555433322
Q ss_pred -------------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 84 -------------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 84 -------------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
.....+..++++.+++.+ ....+..+|||||||+ +..+|+.+ ||...
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~ 510 (582)
T 3b60_A 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_dssp SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 111234556666666643 3344668999999984 36778776 89999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-|+.++..+...+..+.. .++++++||+++.+ +.||+++++|
T Consensus 511 LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~d~i~~l~ 552 (582)
T 3b60_A 511 LDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVE 552 (582)
T ss_dssp CCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH-HhCCEEEEEE
Confidence 999999999988877643 68899999999876 5799999997
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=1.4e-26 Score=202.18 Aligned_cols=158 Identities=15% Similarity=0.045 Sum_probs=118.3
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc----cccccccchheeehhhhccCCCCcccccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL----QKKISVCSFILIRRAYFFKLPNLKSICHEAL 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~ 86 (183)
+|++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..+ +........++.+.+.... . .....
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~----~--~~~~~ 448 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKID----S--SKLNS 448 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHH----H--HHHHC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhh----c--cCCCH
Confidence 45679999999999999999999999999999999999762 111 0000000011111000000 0 00001
Q ss_pred chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+..+..+..++..+..+...+++++
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 528 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1235678899999999999999999999983 47788887 99999999999999999988766668899999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++.+.|||+++++
T Consensus 529 sHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 529 EHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp CSCHHHHHHHCSEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEc
Confidence 999999999999999997
No 42
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=1e-26 Score=200.80 Aligned_cols=158 Identities=15% Similarity=0.062 Sum_probs=117.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc----cccccccchheeehhhhccCCCCcccccccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL----QKKISVCSFILIRRAYFFKLPNLKSICHEAL 86 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~ 86 (183)
+|++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..+ +........++.+.+. ... . .....
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~--~~~--~--~~~~~ 378 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLS--KID--A--SKLNS 378 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHH--HHH--H--HHHTC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHH--hhh--c--cCCCH
Confidence 45578999999999999999999999999999999999762 111 0000000001100000 000 0 00001
Q ss_pred chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
...+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.++..+..++..+..+...+++++
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v 458 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 458 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1235667888899889999999999999983 47788886 99999999999999999988765668899999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++.+.|||+++++
T Consensus 459 sHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 459 EHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp CSCHHHHHHHCSEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEe
Confidence 999999999999999997
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.91 E-value=2.1e-26 Score=200.37 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=120.3
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ... ....+++++|...++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~-~r~~i~~v~Q~~~l~~ 428 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL----TGS-LRNQIGLVQQDNILFS 428 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC----HHH-HHHTEEEECSSCCCCS
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----HHH-HhhheEEEeCCCccCc
Confidence 468885 469999999999999999999999999999999999999998876421 011 1124566666544432
Q ss_pred c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++.+. ...+..+|||||||+ +..+|+.+ ||....
T Consensus 429 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~L 508 (578)
T 4a82_A 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 508 (578)
T ss_dssp SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 1 112234556666655332 233446899999984 36677776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+..+.. .+++++++|+++.+. .||+++++|
T Consensus 509 D~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~ 549 (578)
T 4a82_A 509 DLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-HADKIVVIE 549 (578)
T ss_dssp CHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-TCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-cCCEEEEEE
Confidence 99999999888876644 478999999999874 599999997
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=2.4e-26 Score=200.58 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=119.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++..
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~-~~~i~~v~Q~~~l~~~ 432 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN----PVWL-RSKIGTVSQEPILFSC 432 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC----HHHH-HHSEEEECSSCCCCSS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC----HHHH-HhceEEEccCCcccCC
Confidence 58885 468999999999999999999999999999999999999998775321 0000 1234444443322210
Q ss_pred ---------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195 85 ---------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLE 129 (183)
Q Consensus 85 ---------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~ 129 (183)
....+..++++.+++.++ ...+..+|||||||+ +..+|+.+ ||..
T Consensus 433 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts 512 (595)
T 2yl4_A 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 512 (595)
T ss_dssp BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCS
T ss_pred CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 122345677777776432 223358999999984 36777776 8999
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..|+.++..+...+..+.. .++++++||+++.+ +.||+++++|
T Consensus 513 ~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~d~i~~l~ 555 (595)
T 2yl4_A 513 ALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTI-KNANMVAVLD 555 (595)
T ss_dssp SCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHH-HHSSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HcCCEEEEEE
Confidence 9999999999988877644 57899999999876 4699999997
No 45
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=3e-26 Score=200.07 Aligned_cols=162 Identities=12% Similarity=0.038 Sum_probs=120.6
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|+++ ++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+ ...+++++|...++.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~ 442 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK----RSSL-RSSIGIVLQDTILFS 442 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC----HHHH-HHHEEEECTTCCCCS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC----HHHH-HhceEEEeCCCcccc
Confidence 4688865 58999999999999999999999999999999999999998876421 0111 134566666544432
Q ss_pred c------------ccchHHHHHHHHcCCCCccCCCC-----------CCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCPSLRKLPF-----------SLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~~L~~~~~-----------~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++.+++.+..+..+ .+|||||||+ +..+|+.+ ||...-
T Consensus 443 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~L 522 (598)
T 3qf4_B 443 TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522 (598)
T ss_dssp SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 1 11223455555555544333322 6899999984 36777776 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+..+. ..+++++++|+++.+. .||+++++|
T Consensus 523 D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~ 563 (598)
T 3qf4_B 523 DTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIK-NADLIIVLR 563 (598)
T ss_dssp CHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHH-HCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEE
Confidence 9999999988887664 2689999999999865 499999997
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=8.3e-26 Score=196.95 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=122.4
Q ss_pred cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+ ...++++||...++.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~ 430 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK----LKDL-RGHISAVPQETVLFS 430 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC----HHHH-HHHEEEECSSCCCCS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC----HHHH-HhheEEECCCCcCcC
Confidence 468885 469999999999999999999999999999999999999999876421 1111 134666666554442
Q ss_pred c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++ ....+.+..+|||||||+ +..+|+.+ ||....
T Consensus 431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~L 510 (587)
T 3qf4_A 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510 (587)
T ss_dssp EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTS
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 1 111233444444433 345567788999999984 36778876 899999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+.++..+...+..+. ..+++++++|+++.+ +.|||++++|
T Consensus 511 D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~-~~~d~i~vl~ 551 (587)
T 3qf4_A 511 DPITEKRILDGLKRYT--KGCTTFIITQKIPTA-LLADKILVLH 551 (587)
T ss_dssp CHHHHHHHHHHHHHHS--TTCEEEEEESCHHHH-TTSSEEEEEE
T ss_pred CHHHHHHHHHHHHHhC--CCCEEEEEecChHHH-HhCCEEEEEE
Confidence 9999999998887664 268999999999986 5899999997
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=1.8e-26 Score=199.28 Aligned_cols=165 Identities=12% Similarity=-0.009 Sum_probs=121.5
Q ss_pred cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE---------EEEecCccccccccchheeehhhhccCC
Q 036195 7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF---------AIYAVSLQKKISVCSFILIRRAYFFKLP 76 (183)
Q Consensus 7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~~~~~~~~~~~~l~~~~lg~lp 76 (183)
.++++++ |++||++||+||||||||||+|+|+|+++|++|++ .+.|.+++... .........+++.+
T Consensus 36 ~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF---EKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH---HHHHTTSCCCEEEC
T ss_pred ccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH---HHHHHHhhhhhhhh
Confidence 3678774 89999999999999999999999999999999985 23343332100 00000001111112
Q ss_pred CCccccc-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 77 NLKSICH-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 77 ~l~~l~~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+...... ......+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||...-|+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~ 192 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 1110000 0011246788999999999999999999999983 47888887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus 193 ~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 193 QRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 999999998887654 8899999999999999999999986
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=3e-26 Score=200.02 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=122.1
Q ss_pred cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE---------EEEecCccccccccchheeehhhhccCC
Q 036195 7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF---------AIYAVSLQKKISVCSFILIRRAYFFKLP 76 (183)
Q Consensus 7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~~~~~~~~~~~~l~~~~lg~lp 76 (183)
.+|++++ +++||++||+||||||||||+|+|+|+++|++|++ .+.|.+++.... ... .....+++.+
T Consensus 106 ~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~--~~~-~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE--RLK-NGEIRPVVKP 182 (607)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHH--HHH-HTSCCCEEEC
T ss_pred eeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhh--hhh-hhhcceEEee
Confidence 3678775 89999999999999999999999999999999995 233443321000 000 0001111111
Q ss_pred CCcc---------ccc----cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195 77 NLKS---------ICH----EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA 134 (183)
Q Consensus 77 ~l~~---------l~~----~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~ 134 (183)
+... +.. ......+.++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred chhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 1100 000 0111246788999999999999999999999983 47888887 899999999
Q ss_pred cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+..++..+..+ ..+|+++|||++++.+.||+|++++
T Consensus 263 ~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 263 QRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEEC
Confidence 999999999887654 8899999999999999999999997
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=6.5e-26 Score=195.59 Aligned_cols=160 Identities=11% Similarity=-0.038 Sum_probs=116.4
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-----------EEEecCccccccccchheee-hhhhccCCCCccc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF-----------AIYAVSLQKKISVCSFILIR-RAYFFKLPNLKSI 81 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~~~~~~~~~~~~l~-~~~lg~lp~l~~l 81 (183)
+++||++||+||||||||||+|+|+|+++|++|+| .+.|.++............. .....++.+....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 57999999999999999999999999999999998 44554442110000000000 0001111111100
Q ss_pred c---------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195 82 C---------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL 143 (183)
Q Consensus 82 ~---------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~ 143 (183)
+ .........++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||...-|+..+..+..++
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0 00111245788999999999999999999999983 47888886 899999999999999888
Q ss_pred eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 144 IITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+.. ..+|+++|||++++...||+|++++
T Consensus 182 ~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 182 RELLK--NKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp HHHCT--TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHhC--CCEEEEEEeChHHHHhhCCEEEEec
Confidence 87753 6899999999999999999999986
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-25 Score=195.17 Aligned_cols=162 Identities=14% Similarity=0.021 Sum_probs=116.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeeh-hhhccCCCCc-
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRR-AYFFKLPNLK- 79 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~-~~lg~lp~l~- 79 (183)
.+++||++||+||||||||||+|+|+|+++|++|+|. +.|.+++............. ....++.+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 4789999999999999999999999999999999982 22222211000000000000 0000000000
Q ss_pred -------cc------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195 80 -------SI------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH 137 (183)
Q Consensus 80 -------~l------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~ 137 (183)
.+ ..........++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+..+.
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 00 001112356788999999999999999999999983 37788886 899999999999
Q ss_pred ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..++..+..+ ..+|+++|||++++...||+|++++
T Consensus 259 ~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 259 NAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp HHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999888766 7789999999999999999999996
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-25 Score=192.23 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=117.2
Q ss_pred cccc--cceecCc-----cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE------EEEecCccccccccchheeehhhhc
Q 036195 7 PHLR--YIEDDGV-----KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF------AIYAVSLQKKISVCSFILIRRAYFF 73 (183)
Q Consensus 7 ~~l~--~l~i~~G-----e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I------~~~g~~~~~~~~~~~~~~l~~~~lg 73 (183)
++++ +|++.+| |++||+||||||||||+++|+|+++|++|+. .+..++.. ..+..++.+.+..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~---~~~~~tv~e~~~~- 436 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIA---PKFPGTVRQLFFK- 436 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCC---CCCCSBHHHHHHH-
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccccc---ccCCccHHHHHHH-
Confidence 3455 4556777 8899999999999999999999999999973 11111110 0000011111100
Q ss_pred cCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195 74 KLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI 144 (183)
Q Consensus 74 ~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~ 144 (183)
... . .........++++.+++..+.++++.+|||||+|+ ++.+|+.+ ||....|+.++..+..++.
T Consensus 437 ~~~---~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~ 511 (608)
T 3j16_B 437 KIR---G--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511 (608)
T ss_dssp HCS---S--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHH
T ss_pred Hhh---c--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 000 0 00112235678899999999999999999999983 47788886 8999999999999999998
Q ss_pred ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 145 ITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.+..+...+++++|||++++.+.||||++++
T Consensus 512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 512 RFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 8766668899999999999999999999987
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=8.5e-24 Score=197.62 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=118.4
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
++|++ |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+ ...++++||...++..
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN----VQWL-RAQLGIVSQEPILFDC 1121 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC----HHHH-TTSCEEEESSCCCCSS
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC----HHHH-HhceEEECCCCccccc
Confidence 58885 569999999999999999999999999999999999999999886421 1111 1235566655433321
Q ss_pred --------------ccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195 85 --------------ALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW 130 (183)
Q Consensus 85 --------------~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~ 130 (183)
.......++++..++.+... .....|||||||+ +..+|+.+ ||...
T Consensus 1122 ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~ 1201 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201 (1284)
T ss_dssp BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSS
T ss_pred cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11223445555555533222 2346899999984 35677776 88999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|+.++..++..+.... ..++++++|||++++ +.|||++++|
T Consensus 1202 lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1202 LDTESEKVVQEALDKAR--EGRTCIVIAHRLSTI-QNADLIVVIQ 1243 (1284)
T ss_dssp CCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGG-GSCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHH-HcCCEEEEEE
Confidence 99999999998887543 378999999999986 5599999997
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=3e-24 Score=194.46 Aligned_cols=83 Identities=12% Similarity=-0.033 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCC-c-cCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195 89 PCLERIYVHGCPS-L-RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 89 ~~l~vLe~l~L~~-L-~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+.++++.+++.. + .++++.+|||||+|+ +..+|+.+ ||....|+..+..+...+... ..+|+|+
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiI 954 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIII 954 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEE
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEE
Confidence 4577889999975 4 688999999999983 36778776 899999998888887777544 3589999
Q ss_pred CceeeeeecccceEEEEe
Q 036195 158 SYTYEATIRPRYELICID 175 (183)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (183)
|||++++.+.|||+|+++
T Consensus 955 SHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp CSCHHHHTTTCCEEECCB
T ss_pred ECCHHHHHHhCCEEEEEE
Confidence 999999999999999986
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=3.2e-23 Score=193.70 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=118.3
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|+++ ++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+ ...+++++|...++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~l~~ 477 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN----VRYL-REIIGVVSQEPVLFA 477 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC----HHHH-HHHEEEECSSCCCCS
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC----HHHH-HhheEEEcCCCccCC
Confidence 3688855 58999999999999999999999999999999999999999876421 1111 134666666554443
Q ss_pred c------------ccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195 84 E------------ALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD 131 (183)
Q Consensus 84 ~------------~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~ 131 (183)
. ....+..++++..++. .....+...|||||||+ +..+|+.+ |+..-.
T Consensus 478 ~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~L 557 (1284)
T 3g5u_A 478 TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557 (1284)
T ss_dssp SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSS
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 2 1112334444444332 22344567899999984 35677775 889999
Q ss_pred CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
|+++...++..+.... ..+++++++|+++.+.. ||+++++|
T Consensus 558 D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~ 598 (1284)
T 3g5u_A 558 DTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFD 598 (1284)
T ss_dssp CHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECS
T ss_pred CHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEE
Confidence 9998888888776543 36899999999998755 99999996
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=1.4e-22 Score=178.88 Aligned_cols=168 Identities=15% Similarity=0.021 Sum_probs=102.9
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCc-------EEEEEecCc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLI---------------------KQLNDMFSDMSH-------KFAIYAVSL 55 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl---------------------~~i~gl~~p~~G-------~I~~~g~~~ 55 (183)
..+|+++ +|++||++||+||||||||||+ ++++|+.+|+.| .|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4578754 5899999999999999999998 999999999854 445554433
Q ss_pred cccc----cc-cchhee-e--hhhhccCCC--------------Ccccc------c---c------ccchHHHHHHHHcC
Q 036195 56 QKKI----SV-CSFILI-R--RAYFFKLPN--------------LKSIC------H---E------ALAFPCLERIYVHG 98 (183)
Q Consensus 56 ~~~~----~~-~~~~~l-~--~~~lg~lp~--------------l~~l~------~---~------~~~~~~l~vLe~l~ 98 (183)
.... .. ...... . ...++++++ ...++ . . .........++.++
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 2110 00 000000 0 000000000 00000 0 0 00112234578889
Q ss_pred CCCc-cCCCCCCCChhhhhe------ecCchh--hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeec
Q 036195 99 CPSL-RKLPFSLESGKRNGV------LIGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 99 L~~L-~~~~~~~LSgGqk~~------i~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (183)
+..+ .++++.+|||||+|+ ++.+|+ .+ ||....|+..+..+..++..+..+ ..+|+++|||++++ .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~-~ 268 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTM-L 268 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH-h
Confidence 8875 689999999999983 366776 65 899999999999999999988654 88999999999964 5
Q ss_pred ccceEEEEe
Q 036195 167 PRYELICID 175 (183)
Q Consensus 167 ~~~~~~~~~ 175 (183)
.||++++++
T Consensus 269 ~~d~ii~l~ 277 (670)
T 3ux8_A 269 AADYLIDIG 277 (670)
T ss_dssp HCSEEEEEC
T ss_pred hCCEEEEec
Confidence 699999993
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=9.3e-22 Score=184.30 Aligned_cols=163 Identities=15% Similarity=0.094 Sum_probs=122.0
Q ss_pred cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
.+++|+++ ++++|+.+||+||+|||||||+++|.|+++|++|+|.++|.++.+.. ... -+..+++++|...++
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~----~~~-lr~~i~~v~Q~~~Lf 504 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN----LEF-LRKNVAVVSQEPALF 504 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHH-HHHHEEEECSSCCCC
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc----HHH-HhhcccccCCcceee
Confidence 35789855 58999999999999999999999999999999999999999876531 111 113466777766554
Q ss_pred cc------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195 83 HE------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEW 130 (183)
Q Consensus 83 ~~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~ 130 (183)
.. ....++.++++..++.+ ........|||||||+| ..+|+.+ |+++-
T Consensus 505 ~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSa 584 (1321)
T 4f4c_A 505 NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 584 (1321)
T ss_dssp SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccccc
Confidence 32 22335666666665522 22234467999999943 6666665 88999
Q ss_pred cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
.|..++..++..+..+. ..+++++++|.+. +++.+|++|++|
T Consensus 585 LD~~te~~i~~~l~~~~--~~~T~iiiaHrls-~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 585 LDAESEGIVQQALDKAA--KGRTTIIIAHRLS-TIRNADLIISCK 626 (1321)
T ss_dssp SCTTTHHHHHHHHHHHH--TTSEEEEECSCTT-TTTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHh--CCCEEEEEcccHH-HHHhCCEEEEee
Confidence 99998888888876543 3688999999998 678999999997
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=1.4e-21 Score=183.12 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=119.1
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.+||+++ +|++||.+||+||||||||||+++|.|++.|++|+|.++|.++.+.. ...+ +..++++||...+|.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~----~~~l-R~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN----PEHT-RSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC----HHHH-HTTEEEECSSCCCCS
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC----HHHH-HhheEEECCCCEeeC
Confidence 3689855 59999999999999999999999999999999999999999887531 1111 134566676554443
Q ss_pred c--------------ccchHHHHHHHHcCCCC-------ccCCC----CCCCChhhhhee------cCchhhc---cccc
Q 036195 84 E--------------ALAFPCLERIYVHGCPS-------LRKLP----FSLESGKRNGVL------IGEEEWW---NQLE 129 (183)
Q Consensus 84 ~--------------~~~~~~l~vLe~l~L~~-------L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~ 129 (183)
. ..+.++.++++..++.+ -.+.+ ...|||||||+| ..+|..+ |+.+
T Consensus 1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 1 12345667777776632 22222 356999999843 5566665 7788
Q ss_pred ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
-.|+++...++..+.... ..+++++++|.++. ++.||+|+++|
T Consensus 1247 aLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT-i~~aD~I~Vld 1289 (1321)
T 4f4c_A 1247 ALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT-VMNADCIAVVS 1289 (1321)
T ss_dssp STTSHHHHHHHHHHTTTS--SSSEEEEECSSSST-TTTCSEEEEES
T ss_pred cCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH-HHhCCEEEEEE
Confidence 889888888777765443 26899999999975 56799999997
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=1e-21 Score=177.98 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=108.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhc-CCC--C--CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLND-MFS--D--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL 78 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~g-l~~--p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l 78 (183)
+++|+ ||++++||+++|+||||||||||+|+|+| .+. + ....+.+..++... .....+..+.+.. ..
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~--~~~~ltv~e~l~~----~~ 521 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG--THSDTSVLDFVFE----SG 521 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC--CCTTSBHHHHHHT----TC
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc--cccCCcHHHHHHH----hh
Confidence 45777 55689999999999999999999999995 110 0 00011110000000 0000011111110 00
Q ss_pred ccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195 79 KSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP 148 (183)
Q Consensus 79 ~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~ 148 (183)
. .. ...+.++++.+++. .+.++++.+|||||+|+ +..+|+.+ ||....|+..+..+..++..
T Consensus 522 ---~-~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--- 593 (986)
T 2iw3_A 522 ---V-GT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--- 593 (986)
T ss_dssp ---S-SC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---
T ss_pred ---c-CH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---
Confidence 0 01 34567889999995 68899999999999983 47788887 89999999999999988876
Q ss_pred ccccCCCCCCceeeeeecccceEEEEe
Q 036195 149 QTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+++++|||++++.+.||+++.|+
T Consensus 594 -~g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 594 -CGITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp -SCSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred -CCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 37899999999999999999999986
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.77 E-value=1.1e-20 Score=166.82 Aligned_cols=84 Identities=12% Similarity=-0.023 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch---hhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE---EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~---~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..+.++.+++.. ..++++.+|||||+|+ ++.+| +.+ ||....|+..+..+..++..+..+ ..+|++
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~ 601 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLV 601 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 456677788864 4688999999999983 24444 354 899999999999999999888655 889999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+|||++++ +.||||++++
T Consensus 602 vtHd~~~~-~~~d~i~~l~ 619 (670)
T 3ux8_A 602 IEHNLDVI-KTADYIIDLG 619 (670)
T ss_dssp ECCCHHHH-TTCSEEEEEE
T ss_pred EeCCHHHH-HhCCEEEEec
Confidence 99999976 6699999994
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-21 Score=165.76 Aligned_cols=155 Identities=11% Similarity=-0.037 Sum_probs=100.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-E-EEEEecCcccccccc-ch----h---eeehhhhccCCCCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-K-FAIYAVSLQKKISVC-SF----I---LIRRAYFFKLPNLKS 80 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~-I~~~g~~~~~~~~~~-~~----~---~l~~~~lg~lp~l~~ 80 (183)
+|++++|++++|+||||||||||+|+|+|+.+|++| + |.++|. ........ .. + ........+....
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~-- 208 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-PQQPIFTVPGCISATPISDILDAQLPTWGQSL-- 208 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC--
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-ccCCeeeeccchhhcccccccchhhhhccccc--
Confidence 566899999999999999999999999999999999 9 999983 22211110 00 0 0000000000000
Q ss_pred ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe--------ecCchhh----c---c-cccccCccccccccccee
Q 036195 81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--------LIGEEEW----W---N-QLEWDDEATKHVFSSKLI 144 (183)
Q Consensus 81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~--------i~~~~~w----~---~-~l~~~d~~~~~~~~~~~~ 144 (183)
...........++++.+++....+ +.+|||||+|+ +..+|+. + | |+...|+. +..+..++.
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~ 285 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE 285 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH
Confidence 000001112344567778877666 78999999983 3455666 4 6 78877877 444443333
Q ss_pred ecCcccccCCCCCCceee------eeecccce-----EEEEe
Q 036195 145 ITTPQTVISIPQPSYTYE------ATIRPRYE-----LICID 175 (183)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~ 175 (183)
+...++++++||.+ ++.+.||+ |+.++
T Consensus 286 ----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 286 ----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp ----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred ----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 33567899999988 77899999 99997
No 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=9.4e-22 Score=150.13 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc----
Q 036195 5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---- 80 (183)
Q Consensus 5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---- 80 (183)
.++++.+.++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+.... ....++++++...
T Consensus 8 ~~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~---------~~~~i~~~~q~~~~~~~ 78 (207)
T 1znw_A 8 TKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPG---------EVDGVDYHFIDPTRFQQ 78 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTT---------CCBTTTBEECCHHHHHH
T ss_pred CCcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCccc---------ccCCCeeEecCHHHHHH
Confidence 567888889999999999999999999999999999863222221111111000 0011111111100
Q ss_pred ------------ccc-----cccchHH----HHH------HHHcCCCCccCCCCCCCChhhhheecCchhhc---ccccc
Q 036195 81 ------------ICH-----EALAFPC----LER------IYVHGCPSLRKLPFSLESGKRNGVLIGEEEWW---NQLEW 130 (183)
Q Consensus 81 ------------l~~-----~~~~~~~----l~v------Le~l~L~~L~~~~~~~LSgGqk~~i~~~~~w~---~~l~~ 130 (183)
++. ....... .+. ++.+++..++++++..|| .+..+|... +++..
T Consensus 79 ~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 79 LIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp HHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----EEEECSCHHHHHHHHHT
T ss_pred HHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----EEEECCCHHHHHHHHHh
Confidence 000 0000111 111 333444455566666666 455566553 45555
Q ss_pred c----CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 131 D----DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 131 ~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
. |+..+..+..++..+..+...++++++||++++.+.||+++++
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 3 5567778888877776666889999999999999999999886
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.71 E-value=1.2e-19 Score=162.87 Aligned_cols=84 Identities=12% Similarity=0.004 Sum_probs=71.1
Q ss_pred HHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..++++.+++..+ .++++.+|||||+|+ +..+ |+.+ ||....|+..+..+..++..+..+ ..+|++
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIv 788 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIA 788 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 4678889999874 689999999999983 2443 5665 899999999999999999888655 889999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+|||++++ +.||++|.++
T Consensus 789 isHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 789 VEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp ECCCHHHH-TTCSEEEEEC
T ss_pred EcCCHHHH-HhCCEEEEEC
Confidence 99999998 8899999884
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.70 E-value=9.3e-19 Score=157.99 Aligned_cols=84 Identities=12% Similarity=-0.022 Sum_probs=70.3
Q ss_pred HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..++++.+++.. ..++++.+|||||+|+ +..+ |+.+ ||....|+..+..+..++..+..+ ..+|++
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIv 903 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLV 903 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 457788999987 7889999999999983 2433 3665 899999999999999999887654 889999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+|||++++ +.||+||.++
T Consensus 904 isHdl~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLG 921 (972)
T ss_dssp ECCCHHHH-TTCSEEEEEC
T ss_pred EcCCHHHH-HhCCEEEEEc
Confidence 99999985 7899999984
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.68 E-value=1.4e-19 Score=134.28 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=77.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-cccccccch-
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-SICHEALAF- 88 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-~l~~~~~~~- 88 (183)
||++++||+++|+||||||||||++++.+ |...+....+. +++++.. ...-....+
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~~~----------------g~~~~~~~~~~~~~~~~~ 60 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDFCR----------------GLMSDDENDQTVTGAAFD 60 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHHHH----------------HHHCSSTTCGGGHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHHHH----------------HHhcCcccchhhHHHHHH
Confidence 67899999999999999999999996432 11111111000 1111100 000000000
Q ss_pred ---HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc----------------cccccc
Q 036195 89 ---PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA----------------TKHVFS 140 (183)
Q Consensus 89 ---~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~----------------~~~~~~ 140 (183)
.........+.....+.. ...|+||+|+ +..+|+.+ ||++.-|+. .+..+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~ 139 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK 139 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh
Confidence 111122233444333433 4459998872 36677775 888888887 445566
Q ss_pred cceeecCcccccCCCCCCceeeeeec
Q 036195 141 SKLIITTPQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (183)
..+..+..+ ..+++++|||++++.+
T Consensus 140 ~~l~~l~~~-g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 140 KSIKGLQRE-GFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred hhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence 666666555 8899999999998764
No 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=1.3e-20 Score=162.24 Aligned_cols=164 Identities=9% Similarity=-0.142 Sum_probs=105.0
Q ss_pred ccccc--cc-eecCccEEEEEcCCCCcHHHHHHH--HhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195 6 RPHLR--YI-EDDGVKIIGLYGVRGVGKSTLIKQ--LNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS 80 (183)
Q Consensus 6 ~~~l~--~l-~i~~Ge~~~liGpNGaGKSTLl~~--i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~ 80 (183)
.++|+ ++ .+++||+++|+||||||||||+++ ++|+.+|++|.|++.|.+..... .. ....+++.++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~-----~~-~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDI-----IK-NARSFGWDLAKLV 98 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-----HH-HHGGGTCCHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH-----HH-HHHHcCCChHHhh
Confidence 35676 45 679999999999999999999999 78999999999999998742210 00 0011222211100
Q ss_pred ----ccc-c-ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe-ecCchhhcccccccCcccccccccceeecCcccccC
Q 036195 81 ----ICH-E-ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV-LIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVIS 153 (183)
Q Consensus 81 ----l~~-~-~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~-i~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 153 (183)
++. . .......++++.+++..+.++.+.+||+||+++ +..++.=..+....|+..+..+..++..++. ..++
T Consensus 99 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~t 177 (525)
T 1tf7_A 99 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGAT 177 (525)
T ss_dssp HTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCE
T ss_pred ccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCE
Confidence 000 0 000001112233444456667788899999884 3333322222234567778888888888866 4899
Q ss_pred CCCCCceeeee--------e-cccceEEEEee
Q 036195 154 IPQPSYTYEAT--------I-RPRYELICIDV 176 (183)
Q Consensus 154 ~~~~~~~~~~~--------~-~~~~~~~~~~~ 176 (183)
+++++|+++++ . ..||+|++++-
T Consensus 178 vl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 178 TVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 99999999986 3 34999999964
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=9.1e-19 Score=134.13 Aligned_cols=129 Identities=12% Similarity=-0.083 Sum_probs=74.3
Q ss_pred ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc--
Q 036195 6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI-- 81 (183)
Q Consensus 6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l-- 81 (183)
+++|+++ ++||+++|+||||||||||+++|+|+ +|++|+|... ++... .......++++++.. .+
T Consensus 13 ~~~l~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~~~------~~~~~~~ig~v~q~~~enl~~ 81 (208)
T 3b85_A 13 KHYVDAI--DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILTRP------AVEAGEKLGFLPGTLNEKIDP 81 (208)
T ss_dssp HHHHHHH--HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEEEC------SCCTTCCCCSSCC------CT
T ss_pred HHHHHhc--cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--EecCC------chhhhcceEEecCCHHHHHHH
Confidence 3566764 89999999999999999999999999 9999999532 11110 000012344554432 00
Q ss_pred c---------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195 82 C---------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL 143 (183)
Q Consensus 82 ~---------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~ 143 (183)
+ .........++++. +.||+|+ +..+|+.+ ||... .+..+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~--------------glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l 143 (208)
T 3b85_A 82 YLRPLHDALRDMVEPEVIPKLMEA--------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL 143 (208)
T ss_dssp TTHHHHHHHTTTSCTTHHHHHHHT--------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHh--------------CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH
Confidence 0 00000112222322 1298873 36778776 66765 666666666
Q ss_pred eecCcccccCCCCCCceeeeeec
Q 036195 144 IITTPQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (183)
..+ .+ ..+++ +|||++.+..
T Consensus 144 ~~l-~~-g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 144 TRL-GF-GSKMV-VTGDITQVDL 163 (208)
T ss_dssp TTB-CT-TCEEE-EEEC------
T ss_pred HHh-cC-CCEEE-EECCHHHHhC
Confidence 666 33 67788 9999987764
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.67 E-value=4.1e-18 Score=154.21 Aligned_cols=84 Identities=8% Similarity=-0.086 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195 90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ 156 (183)
Q Consensus 90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
..++++.+++.. ..++++.+|||||+|+ +..+ |+.+ ||....|+..+..+..++..+..+ ..+|++
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIv 921 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIV 921 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 356788889887 6789999999999983 2433 3665 899999999999999999887654 889999
Q ss_pred CCceeeeeecccceEEEEe
Q 036195 157 PSYTYEATIRPRYELICID 175 (183)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (183)
+|||++++ +.||++|.++
T Consensus 922 isHdl~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDLG 939 (993)
T ss_dssp ECCCHHHH-TTCSEEEEEE
T ss_pred EcCCHHHH-HhCCEEEEEC
Confidence 99999985 7899999984
No 68
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.65 E-value=7.4e-17 Score=129.95 Aligned_cols=134 Identities=12% Similarity=-0.010 Sum_probs=83.0
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
.++|+ +|+|++|++++|+||||||||||+++|+|++ +|+|......... .+..+..+ ..+.+ . .
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~---lf~~ti~~-~ni~~------~-~ 178 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSH---FWLASLAD-TRAAL------V-D 178 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSG---GGGGGGTT-CSCEE------E-E
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccc---cccccHHH-Hhhcc------C-c
Confidence 35677 4569999999999999999999999999998 8999654321100 00001100 01111 1 1
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe---ecCchhhcccccccCcccccccccceeecCcccccCCCCCCce
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV---LIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~---i~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
.. .....+.++.+ ++...+ ...|||||||+ +..+|..+= ....|+.++..+.. .+|+
T Consensus 179 ~~-~~~~~~~i~~~-L~~gld--g~~LSgGqkQRARAll~~p~iLl-Ts~LD~~~~~~i~~---------------ltH~ 238 (305)
T 2v9p_A 179 DA-THACWRYFDTY-LRNALD--GYPVSIDRKHKAAVQIKAPPLLV-TSNIDVQAEDRYLY---------------LHSR 238 (305)
T ss_dssp EE-CHHHHHHHHHT-TTGGGG--TCCEECCCSSCCCCEECCCCEEE-EESSCSTTCGGGGG---------------GTTT
T ss_pred cc-cHHHHHHHHHH-hHccCC--ccCcCHHHHHHHHHHhCCCCEEE-ECCCCHHHHHHHHH---------------HhCC
Confidence 11 11344555553 444334 67899999983 455555433 66667666666541 2899
Q ss_pred eeeeecccceEEEEe
Q 036195 161 YEATIRPRYELICID 175 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (183)
+.. ++.+|++ +++
T Consensus 239 ~~~-~~~aD~i-vl~ 251 (305)
T 2v9p_A 239 VQT-FRFEQPC-TDE 251 (305)
T ss_dssp EEE-EECCCCC-CCC
T ss_pred HHH-HHhCCEE-EEe
Confidence 876 5789999 664
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.65 E-value=7.2e-18 Score=140.65 Aligned_cols=62 Identities=6% Similarity=-0.164 Sum_probs=51.4
Q ss_pred CChhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195 110 ESGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 110 LSgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
+||||+|+ ++.+| ..+ |+....|+..+..+..++..+. + ..+++++||+.++ ++.||+++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~-~~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQI-AARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHH-HTTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHH-HhhcCeEEEE
Confidence 59999983 24555 554 8899999999999999998876 4 7899999999965 5789999999
No 70
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.64 E-value=1.1e-18 Score=143.23 Aligned_cols=159 Identities=13% Similarity=0.004 Sum_probs=93.8
Q ss_pred ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195 7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA 85 (183)
Q Consensus 7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~ 85 (183)
+++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.|.+.|++.......... .....+.+ ......+..
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~--~~~~~~~~--~v~~~~~~~ 135 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL--LPQSTLSK--CVLVVTTSD 135 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--SCHHHHTT--EEEEEECTT
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--hhhhhhhc--eEEEEECCC
Confidence 45654 57899999999999999999999999999999999999988753211000000 00000000 000011110
Q ss_pred c--chHHHHHHHHcCCCCc-cC---------CCCCCCChhhhh-ee-cCchhhcccccccCcccccccccceeecCc-cc
Q 036195 86 L--AFPCLERIYVHGCPSL-RK---------LPFSLESGKRNG-VL-IGEEEWWNQLEWDDEATKHVFSSKLIITTP-QT 150 (183)
Q Consensus 86 ~--~~~~l~vLe~l~L~~L-~~---------~~~~~LSgGqk~-~i-~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~-~~ 150 (183)
. .......+..+.+.+. ++ ..+..+|+||++ .+ .++|.. ...-|+.....+..++..... +.
T Consensus 136 ~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~---t~Gldp~~~~~l~~ller~~~~~~ 212 (347)
T 2obl_A 136 RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDV---RGGFPPSVFSSLPKLLERAGPAPK 212 (347)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCC---BTTBCHHHHHHHHHHHTTCEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCc---ccCCCHHHHHHHHHHHHHHhCCCC
Confidence 0 1111111111111111 11 456788999955 33 444443 567788887777777766653 33
Q ss_pred cc-----CCCCCCceeeeeecccceEEEE
Q 036195 151 VI-----SIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 151 ~~-----~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.. +|++++||+. ...||+++.|
T Consensus 213 GsiT~~~tVl~~thdl~--~~i~d~v~~i 239 (347)
T 2obl_A 213 GSITAIYTVLLESDNVN--DPIGDEVRSI 239 (347)
T ss_dssp SEEEEEEEEECCSSCCC--CHHHHHHHHH
T ss_pred CCeeeEEEEEEeCCCCC--ChhhhheEEe
Confidence 44 8999999998 6778887665
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=5.8e-17 Score=146.59 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCCc-cCCCCCCCChhhhhee------cCc---hhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195 89 PCLERIYVHGCPSL-RKLPFSLESGKRNGVL------IGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP 155 (183)
Q Consensus 89 ~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..+++++.+++..+ .++++.+|||||+|+| ..+ |..+ ||....|+..+..+...+..+..+ ..+|+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence 34677888888754 5789999999999843 333 3454 899999999999999999887654 88999
Q ss_pred CCCceeeeeecccceEEEEe
Q 036195 156 QPSYTYEATIRPRYELICID 175 (183)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ 175 (183)
++|||++++ +.||+||.+.
T Consensus 863 vI~HdL~~i-~~ADrIivLg 881 (916)
T 3pih_A 863 VIEHNLDVI-KNADHIIDLG 881 (916)
T ss_dssp EECCCHHHH-TTCSEEEEEE
T ss_pred EEeCCHHHH-HhCCEEEEec
Confidence 999999875 5699999984
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.63 E-value=2.1e-18 Score=144.27 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=99.7
Q ss_pred cccccc--ceecCcc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccc
Q 036195 6 RPHLRY--IEDDGVK--------------------IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCS 63 (183)
Q Consensus 6 ~~~l~~--l~i~~Ge--------------------~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~ 63 (183)
+.++++ +++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+.........
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 345664 4589999 999999999999999999999999999999998876532100000
Q ss_pred hheeehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChh--hhhe------ecC----------chhhc
Q 036195 64 FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGK--RNGV------LIG----------EEEWW 125 (183)
Q Consensus 64 ~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgG--qk~~------i~~----------~~~w~ 125 (183)
.+......+...+... . ......++++.+++......+. +|+| |+++ +.. +|+.+
T Consensus 116 ~~~~~~ltv~D~~g~~---~--~~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIG---S--TNFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CSSCTTEEEEECCCGG---G--SSCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ccccCCeeehHhhccc---c--hHHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 0000000000011110 0 1234677888888876544443 9999 8762 233 66665
Q ss_pred ---ccccccCcccccccccceeecCc--------ccccCCCCCCceeee--eecccceE
Q 036195 126 ---NQLEWDDEATKHVFSSKLIITTP--------QTVISIPQPSYTYEA--TIRPRYEL 171 (183)
Q Consensus 126 ---~~l~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~ 171 (183)
||....|+..+..+...+..+.. .....+++.||+++. +-..+|++
T Consensus 189 lLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred ccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 78899999888888877776631 112447788998876 54555544
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.62 E-value=1.5e-18 Score=133.52 Aligned_cols=42 Identities=33% Similarity=0.408 Sum_probs=34.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT 58 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc
Confidence 5569999999999999999999999999998 6 99999 76553
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.58 E-value=1.1e-17 Score=141.12 Aligned_cols=162 Identities=10% Similarity=-0.079 Sum_probs=95.5
Q ss_pred ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCC-ccc
Q 036195 7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNL-KSI 81 (183)
Q Consensus 7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l-~~l 81 (183)
++|++ |++.+|++++|+||||||||||+++|+|+.+|++|.|.+.|+ ++................++++++. ...
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence 46665 578999999999999999999999999999999999999997 3332100000000000112232221 111
Q ss_pred ccccc-chHHHHHHHHcCC-----CCccCCCCCCCChhhhh-ee-cCchhhcccccccCcccccccccceeecCc---cc
Q 036195 82 CHEAL-AFPCLERIYVHGC-----PSLRKLPFSLESGKRNG-VL-IGEEEWWNQLEWDDEATKHVFSSKLIITTP---QT 150 (183)
Q Consensus 82 ~~~~~-~~~~l~vLe~l~L-----~~L~~~~~~~LSgGqk~-~i-~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~---~~ 150 (183)
+.+.. ........+.+.- ..+.+ .+..+|+||++ .+ .++|.. .+.-|+..+..+..++..... +.
T Consensus 226 ~~~~~v~~~~~~~ae~~~~~~~~v~~~ld-~l~~lS~g~qrvslAl~~p~~---t~glD~~~~~~l~~ll~r~~~~~~~~ 301 (438)
T 2dpy_A 226 LLRMQGAAYATRIAEDFRDRGQHVLLIMD-SLTRYAMAQREIALAIGEPPA---TKGYPPSVFAKLPALVERAGNGIHGG 301 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEE-CHHHHHHHHHHHHHHTTCCCC---SSSCCTTHHHHHHHHHTTCSCCSTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHH-hHHHHHHHHHHHHHHhCCCcc---cccCCHHHHHHHHHHHHHHHhccCCC
Confidence 11000 0011111121110 11122 25668999966 33 555554 677788888888887776655 22
Q ss_pred c-----cCCCCCCceeeeeecccceEEEE
Q 036195 151 V-----ISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 151 ~-----~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
. .++++++||+. ...+|+++.|
T Consensus 302 GsiT~~~tVlv~tHdl~--~~iad~v~~l 328 (438)
T 2dpy_A 302 GSITAFYTVLTEGDDQQ--DPIADSARAI 328 (438)
T ss_dssp CEEEEEEEEECSSSCSC--CHHHHHHHHH
T ss_pred CcccceeEEEEeCCCcc--chhhceEEEE
Confidence 3 38999999997 5666766554
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.56 E-value=2.6e-17 Score=123.06 Aligned_cols=140 Identities=9% Similarity=-0.087 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHHHHHcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHG 98 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~ 98 (183)
.++|+||||||||||+++|+|++. |.+.|.+.+.... + .....+++.++........ +..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~----~-~~~~~ig~~~~~~~~~~~~--------~~~~~ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD----P-ETKKRTGFRIITTEGKKKI--------FSSKF 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-----------CCEEEEEETTCCEEE--------EEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhcc----c-cccceeEEEeecCcHHHHH--------HHhhc
Confidence 689999999999999999999985 4555543321100 0 0001122222111000000 00001
Q ss_pred C--CCccCCCCCCCChhhhhe-----------ecCchhhc---c--cccccCcccccccccceeecCcccccCCCCCC--
Q 036195 99 C--PSLRKLPFSLESGKRNGV-----------LIGEEEWW---N--QLEWDDEATKHVFSSKLIITTPQTVISIPQPS-- 158 (183)
Q Consensus 99 L--~~L~~~~~~~LSgGqk~~-----------i~~~~~w~---~--~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (183)
. ....+.++.+||+||+|+ +..+|+.+ | |.+..|+..+..+...+.. ...++++++
T Consensus 64 ~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~ 139 (178)
T 1ye8_A 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPI 139 (178)
T ss_dssp CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCS
T ss_pred CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEcc
Confidence 1 135677788999999872 34567775 6 8999998888887777654 233355555
Q ss_pred -ceeeeeecccce--EEEEeeCCCC
Q 036195 159 -YTYEATIRPRYE--LICIDVDDTG 180 (183)
Q Consensus 159 -~~~~~~~~~~~~--~~~~~~~~~~ 180 (183)
||.+++.+.|++ .-+++++...
T Consensus 140 ~h~~~~~~~i~~r~~~~i~~~~~~~ 164 (178)
T 1ye8_A 140 RDVHPLVKEIRRLPGAVLIELTPEN 164 (178)
T ss_dssp SCCSHHHHHHHTCTTCEEEECCTTT
T ss_pred CCCchHHHHHHhcCCcEEEEecCcC
Confidence 699999888888 5566766543
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=1e-17 Score=129.99 Aligned_cols=43 Identities=16% Similarity=-0.015 Sum_probs=37.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHh--cCCCCCCcEEEEEecCc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLN--DMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~~~ 55 (183)
.+++|++++|+||||||||||+++|+ |+..+.+|.+++.+...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 58999999999999999999999999 77567788888877643
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.54 E-value=2.4e-17 Score=132.87 Aligned_cols=142 Identities=10% Similarity=-0.061 Sum_probs=81.7
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchhee-ehhhhccCCCCcc-ccccccch
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILI-RRAYFFKLPNLKS-ICHEALAF 88 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l-~~~~lg~lp~l~~-l~~~~~~~ 88 (183)
+|++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...........+ ....++++++... .+.....+
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~ 173 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 173 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHH
Confidence 456789999999999999999999999999999999999999876431000000011 1123444443322 21111111
Q ss_pred HHHH----------HHHHcCCCCccCCCCCCCChhhhhe----ecCchh--hc--ccccccCcccccccccceeecCccc
Q 036195 89 PCLE----------RIYVHGCPSLRKLPFSLESGKRNGV----LIGEEE--WW--NQLEWDDEATKHVFSSKLIITTPQT 150 (183)
Q Consensus 89 ~~l~----------vLe~l~L~~L~~~~~~~LSgGqk~~----i~~~~~--w~--~~l~~~d~~~~~~~~~~~~~~~~~~ 150 (183)
+... +++.+++....+.++.+|| -|+.. +..+|+ ++ |+....|+..+. ..+..+.
T Consensus 174 e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDptsglD~~~~~------~~~~~~~ 246 (302)
T 3b9q_A 174 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA------REFNEVV 246 (302)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH-HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH------HHHHHHT
T ss_pred HHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH-HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH------HHHHHhc
Confidence 1111 1222334444445556778 23322 356777 64 888777765432 1122234
Q ss_pred ccCCCCCCc
Q 036195 151 VISIPQPSY 159 (183)
Q Consensus 151 ~~~~~~~~~ 159 (183)
..+++++||
T Consensus 247 g~t~iiiTh 255 (302)
T 3b9q_A 247 GITGLILTK 255 (302)
T ss_dssp CCCEEEEEC
T ss_pred CCCEEEEeC
Confidence 677888899
No 78
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.53 E-value=1.2e-15 Score=111.87 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=42.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
||++++|++++|+||||||||||+|+|+|++ |++|+|.+.|.++.
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 5678999999999999999999999999999 99999999988764
No 79
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.53 E-value=6.2e-16 Score=127.60 Aligned_cols=70 Identities=16% Similarity=0.010 Sum_probs=59.9
Q ss_pred CCCCCCCChhhhheec------------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeeccc
Q 036195 104 KLPFSLESGKRNGVLI------------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPR 168 (183)
Q Consensus 104 ~~~~~~LSgGqk~~i~------------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (183)
++++.+|||||+|++. .+|+.+ ||....|+..+..+..++..+..+ ..+|+++|||++. ++.+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHH-HHhC
Confidence 4678899999998432 577776 899999999999999999888655 8899999999998 7889
Q ss_pred ceEEEEe
Q 036195 169 YELICID 175 (183)
Q Consensus 169 ~~~~~~~ 175 (183)
|++++++
T Consensus 352 d~~~~l~ 358 (365)
T 3qf7_A 352 DRKLRIT 358 (365)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=9.6e-16 Score=131.88 Aligned_cols=141 Identities=9% Similarity=-0.072 Sum_probs=103.5
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE--EEEEecCccccccccchheeehhhhccCCCCccccccccchHH
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK--FAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPC 90 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~--I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~ 90 (183)
.+.+|++++|+||||||||||++.++|+..|. |. +++..++.... + .. .... .. + ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~-----l--~~--~~~~---~g-~-------~~ 335 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQ-----L--LR--NAYS---WG-M-------DF 335 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHH-----H--HH--HHHT---TS-C-------CH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHH-----H--HH--HHHH---cC-C-------CH
Confidence 78999999999999999999999999999885 54 46655543210 0 00 0000 00 0 01
Q ss_pred HHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc--ccccccCcc-----cccccccceeecCcccccCCCCC
Q 036195 91 LERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW--NQLEWDDEA-----TKHVFSSKLIITTPQTVISIPQP 157 (183)
Q Consensus 91 l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~--~~l~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+ +...++..+.+.++.+||+||+++ +..+|+.+ |+++.-|.. .+..+..++..++.+ .++++++
T Consensus 336 ~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilv 413 (525)
T 1tf7_A 336 EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFT 413 (525)
T ss_dssp HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 12 334566677888899999999882 25667764 999999988 888888888877654 8999999
Q ss_pred Ccee----------eeeecccceEEEEee
Q 036195 158 SYTY----------EATIRPRYELICIDV 176 (183)
Q Consensus 158 ~~~~----------~~~~~~~~~~~~~~~ 176 (183)
+|+. +.+...||+|+.++-
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEEEEE
Confidence 9999 778889999998864
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=4.2e-15 Score=120.55 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=57.0
Q ss_pred CccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195 101 SLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP 167 (183)
Q Consensus 101 ~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (183)
...+.++..||+||+|+ | + .+|..+ ||....|+..+..+..++..+. + ..+++++||+. .++..
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~-~~~~~ 287 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK-IVMEA 287 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT-TGGGG
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCH-HHHhh
Confidence 34566788999999982 2 2 355654 8899999999999988887764 2 57899999995 57889
Q ss_pred cceEEEEeeCC
Q 036195 168 RYELICIDVDD 178 (183)
Q Consensus 168 ~~~~~~~~~~~ 178 (183)
||++..+-+.+
T Consensus 288 ~d~~~~v~~~~ 298 (322)
T 1e69_A 288 ADLLHGVTMVN 298 (322)
T ss_dssp CSEEEEEEESS
T ss_pred CceEEEEEEeC
Confidence 99986555554
No 82
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.49 E-value=1.4e-14 Score=117.09 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=59.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE--EEEEecCccccccccchheeehhhhccCCCCccccccccchHHH
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK--FAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCL 91 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~--I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l 91 (183)
+++|+++||+||||||||||+++|+|+++|+.|. |.+-.++.. ....+..+.. .... ..............
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~----~~~~t~~e~~--~~~~-~~g~~~~~d~~~~~ 159 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF----LYPNAELQRR--NLMH-RKGFPESYNRRALM 159 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG----BCCHHHHHHT--TCTT-CTTSGGGBCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc----CCcccHHHHH--HHHH-hcCCChHHHHHHHH
Confidence 7899999999999999999999999999998773 333222211 0011111111 1111 01111111223456
Q ss_pred HHHHHcCCCCccCCCCCCCChhhhhee
Q 036195 92 ERIYVHGCPSLRKLPFSLESGKRNGVL 118 (183)
Q Consensus 92 ~vLe~l~L~~L~~~~~~~LSgGqk~~i 118 (183)
+.++.++ ....+.++..||+||++++
T Consensus 160 ~~L~~l~-~~~~~~~~~~lS~G~~qRv 185 (312)
T 3aez_A 160 RFVTSVK-SGSDYACAPVYSHLHYDII 185 (312)
T ss_dssp HHHHHHH-TTCSCEEEEEEETTTTEEE
T ss_pred HHHHHhC-CCcccCCcccCChhhhhhh
Confidence 6777776 4455567789999999843
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=1.8e-16 Score=130.38 Aligned_cols=142 Identities=10% Similarity=-0.061 Sum_probs=82.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchhee-ehhhhccCCCCcc-ccccccch
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILI-RRAYFFKLPNLKS-ICHEALAF 88 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l-~~~~lg~lp~l~~-l~~~~~~~ 88 (183)
+|++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...........+ ....++++++... .+.....+
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~ 230 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 230 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHH
Confidence 456789999999999999999999999999999999999999876431000000011 1123344443322 11111111
Q ss_pred HHHH----------HHHHcCCCCccCCCCCCCChhhhhe----ecCchh--hc--ccccccCcccccccccceeecCccc
Q 036195 89 PCLE----------RIYVHGCPSLRKLPFSLESGKRNGV----LIGEEE--WW--NQLEWDDEATKHVFSSKLIITTPQT 150 (183)
Q Consensus 89 ~~l~----------vLe~l~L~~L~~~~~~~LSgGqk~~----i~~~~~--w~--~~l~~~d~~~~~~~~~~~~~~~~~~ 150 (183)
+... +++.+++....+.++.+|| -|+.. +..+|+ ++ |+....|+..+. ..+..+.
T Consensus 231 e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDpttglD~~~~~------~~~~~~~ 303 (359)
T 2og2_A 231 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA------REFNEVV 303 (359)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH------HHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH------HHHHHhc
Confidence 1111 1222344444445566778 23322 356777 64 888777765432 1122234
Q ss_pred ccCCCCCCc
Q 036195 151 VISIPQPSY 159 (183)
Q Consensus 151 ~~~~~~~~~ 159 (183)
..+++++||
T Consensus 304 g~t~iiiTh 312 (359)
T 2og2_A 304 GITGLILTK 312 (359)
T ss_dssp CCCEEEEES
T ss_pred CCeEEEEec
Confidence 677888899
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.46 E-value=8.3e-16 Score=122.01 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence 58999999999999999999999999999999998664
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.39 E-value=5.7e-14 Score=110.86 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=46.9
Q ss_pred cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCc
Q 036195 5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSL 55 (183)
Q Consensus 5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~ 55 (183)
+.++|+++++++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++
T Consensus 13 ~~~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 13 LPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp CCTHHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CHHHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 3468888889999999999999999999999999999998 99999999765
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.35 E-value=6.5e-15 Score=112.74 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=35.6
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-------CCcEEEEEecC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-------MSHKFAIYAVS 54 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-------~~G~I~~~g~~ 54 (183)
.+++|++++|+||||||||||+++|+|+..| ..|.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3899999999999999999999999996655 44577887765
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.32 E-value=3.2e-14 Score=113.64 Aligned_cols=162 Identities=12% Similarity=-0.006 Sum_probs=90.1
Q ss_pred cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCccccccccchheeehhhhccCCCCc-ccc
Q 036195 7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-SIC 82 (183)
Q Consensus 7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-~l~ 82 (183)
++|+++ .+.+|++++|+||||||||||++.|+|...|++| .|.+.+.+.... .+............ ..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~-------~~~~r~~~~~~~~~~~~~ 95 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVE-------ETAEDLIGLHNRVRLRQS 95 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHH-------HHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHH-------HHHHHHHHHHcCCChhhc
Confidence 456644 5899999999999999999999999999999988 786655443211 00000000000000 000
Q ss_pred c-----cccchHH----HHHHHHcCCCCccCCCCCCCChhhhh-e-----ecCchhhc--ccccc-------cCc-cccc
Q 036195 83 H-----EALAFPC----LERIYVHGCPSLRKLPFSLESGKRNG-V-----LIGEEEWW--NQLEW-------DDE-ATKH 137 (183)
Q Consensus 83 ~-----~~~~~~~----l~vLe~l~L~~L~~~~~~~LSgGqk~-~-----i~~~~~w~--~~l~~-------~d~-~~~~ 137 (183)
. ....... .++++...+. +.+ .+..+|.++.+ + +..+|+.+ |.+.- .|. ....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~~l~-i~~-~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~ 173 (296)
T 1cr0_A 96 DSLKREIIENGKFDQWFDELFGNDTFH-LYD-SFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMID 173 (296)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSSCEE-EEC-CCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhccCCEE-EEC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHH
Confidence 0 0000011 1122211211 222 23567787743 2 34566664 54443 232 3334
Q ss_pred ccccceeecCcccccCCCCCCcee--e--------------------eeecccceEEEEeeC
Q 036195 138 VFSSKLIITTPQTVISIPQPSYTY--E--------------------ATIRPRYELICIDVD 177 (183)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~~~~~ 177 (183)
.+...+..+..+..+.|+++||+. + .+...||+|+.|+-.
T Consensus 174 ~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 174 NLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 455556666667789999999996 4 556789999999743
No 88
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.32 E-value=2.7e-13 Score=115.19 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=44.5
Q ss_pred ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.++|+ +|++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 34565 456889 999999999999999999999999999999999998765
No 89
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.30 E-value=9.2e-13 Score=108.17 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=56.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEE-ecCccccccccchheeehhhhccCCCCccccc--------
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIY-AVSLQKKISVCSFILIRRAYFFKLPNLKSICH-------- 83 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~-g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-------- 83 (183)
..+|++++|+||||||||||+++|+|+.. |++|+|.+. |....... ...++++++...++.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~---------~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT---------AARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C---------CCEEEECTTSCEEEECHHHHTCC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE---------EEEEEEECCCCEecCcccHHHhh
Confidence 45899999999999999999999999999 999999986 54321100 011122222111110
Q ss_pred --ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhh
Q 036195 84 --EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNG 116 (183)
Q Consensus 84 --~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~ 116 (183)
... .....++++.+++..+.+.+..++| ||++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~ 320 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAI 320 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHH
Confidence 000 1112456778888899999999999 8877
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.29 E-value=3.6e-13 Score=102.91 Aligned_cols=159 Identities=9% Similarity=-0.120 Sum_probs=87.7
Q ss_pred ccccc---eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195 8 HLRYI---EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE 84 (183)
Q Consensus 8 ~l~~l---~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~ 84 (183)
.|+.+ .+.+|++++|+||||||||||++.+++...+.+|.|.+.+.+..... ... ....++..++.......
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~ 85 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS----IIR-QAKQFNWDFEEYIEKKL 85 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH----HHH-HHHHTTCCCGGGBTTTE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH----HHH-HHHHhcchHHHHhhCCE
Confidence 45544 38899999999999999999999999998888899988776543210 000 00011111110000000
Q ss_pred ccchHHHHHHHHcCCCCccCCCCCCCChhhhh-ee-----cCchh--hc--cccc---ccCcccccccccceeecCcccc
Q 036195 85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-VL-----IGEEE--WW--NQLE---WDDEATKHVFSSKLIITTPQTV 151 (183)
Q Consensus 85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-~i-----~~~~~--w~--~~l~---~~d~~~~~~~~~~~~~~~~~~~ 151 (183)
.......... + ... .....|.++.+ .+ ..+|+ .+ |.+. ..|+.....+...+..+..+..
T Consensus 86 ~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 86 IIIDALMKEK---E-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp EEEECCC--------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred EEEecccccc---C-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 0000000000 0 000 11233666654 21 23566 43 4433 3366555556556665555668
Q ss_pred cCCCCCCcee--------eeeecccceEEEEeeCC
Q 036195 152 ISIPQPSYTY--------EATIRPRYELICIDVDD 178 (183)
Q Consensus 152 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 178 (183)
+.+++++|+. ..+...||+|+.++-+.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8999999999 45778899999998653
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.28 E-value=4e-13 Score=104.69 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.1
Q ss_pred ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+++|++ |++++|+++||+||||||||||+++|+|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567875 568999999999999999999999999976
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.28 E-value=5.4e-14 Score=106.78 Aligned_cols=142 Identities=16% Similarity=0.041 Sum_probs=75.7
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHH
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLER 93 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~v 93 (183)
.++|+++||+||||||||||+++|+|++.| .+.+-.++..-... ...+......+.+ ............++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL-GHLPLEERLRVNY-----DHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC-TTSCHHHHHHSCT-----TSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc-ccccHHHhcCCCC-----CChhhhhHHHHHHH
Confidence 578999999999999999999999999876 34443332110000 0001101111100 00111112235567
Q ss_pred HHHcCCCCccCCCCCCCChhhhh----ee------cCchhh--c-ccccc-------cCcccccccccceeecCcccccC
Q 036195 94 IYVHGCPSLRKLPFSLESGKRNG----VL------IGEEEW--W-NQLEW-------DDEATKHVFSSKLIITTPQTVIS 153 (183)
Q Consensus 94 Le~l~L~~L~~~~~~~LSgGqk~----~i------~~~~~w--~-~~l~~-------~d~~~~~~~~~~~~~~~~~~~~~ 153 (183)
++.+++.+..+.|...+|+|+++ ++ ..++.. + +++.. .|......+...+.....+...+
T Consensus 74 l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t 153 (211)
T 3asz_A 74 AQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRS 153 (211)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCC
Confidence 77777777777788999999752 22 222222 1 23332 45544455555444322223567
Q ss_pred CCCCCceeeee
Q 036195 154 IPQPSYTYEAT 164 (183)
Q Consensus 154 ~~~~~~~~~~~ 164 (183)
+.+++|++...
T Consensus 154 ~~~~~~~~~~~ 164 (211)
T 3asz_A 154 LEGVVAQYLEQ 164 (211)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 77788886544
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.25 E-value=1.3e-12 Score=106.36 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=42.4
Q ss_pred cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
++++ +.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 4554 4589999999999999999999999999999999999999864
No 94
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.23 E-value=1.9e-12 Score=104.12 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=34.1
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCcc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQ 56 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~ 56 (183)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence 35789999999999999999999999 99999999999 887654
No 95
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.22 E-value=4.3e-12 Score=102.17 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=39.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
+|++++|+||||||||||++.|+|+++|++|+|.+.|.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 699999999999999999999999999999999999988653
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.22 E-value=3.6e-12 Score=103.93 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=60.7
Q ss_pred ccCCCCCCCChhhhhe------e------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeec
Q 036195 102 LRKLPFSLESGKRNGV------L------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR 166 (183)
Q Consensus 102 L~~~~~~~LSgGqk~~------i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (183)
..++++.+|||||+|+ + .++|..+ ||....|+..+..+..++..+..+ ..+++++|||. .++.
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~-~~~~ 318 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKD 318 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChH-HHHH
Confidence 3467889999999872 2 3467775 889999999999998888776555 56899999995 5789
Q ss_pred ccceEEEEeeCC
Q 036195 167 PRYELICIDVDD 178 (183)
Q Consensus 167 ~~~~~~~~~~~~ 178 (183)
.||+++++++.+
T Consensus 319 ~~d~~~~l~~~~ 330 (339)
T 3qkt_A 319 AADHVIRISLEN 330 (339)
T ss_dssp GCSEEEEEEEET
T ss_pred hCCEEEEEEecC
Confidence 999999999865
No 97
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.22 E-value=3.8e-12 Score=104.74 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=40.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 4568999999999999999999999999999999999999974
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.21 E-value=7.4e-13 Score=104.96 Aligned_cols=137 Identities=12% Similarity=-0.064 Sum_probs=81.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC----------CcEE-EEEecCccccccccchheeehhhhccCCCCccc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----------SHKF-AIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI 81 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----------~G~I-~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l 81 (183)
.+.+|++++|+||||||||||++.+++....- .|.+ ++..++... .+. .....++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~-----~~~-~r~~~~g-------- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT-----AIH-HRLHALG-------- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHH-----HHH-HHHHHHH--------
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHH-----HHH-HHHHHHH--------
Confidence 37899999999999999999999999866431 2333 222221100 000 0000011
Q ss_pred cccccchHHHHHHHHcCCCCccCCCCCCCChhhhh---eecCchhhc--cccc---ccCcccc---cccccceeecCccc
Q 036195 82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG---VLIGEEEWW--NQLE---WDDEATK---HVFSSKLIITTPQT 150 (183)
Q Consensus 82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~---~i~~~~~w~--~~l~---~~d~~~~---~~~~~~~~~~~~~~ 150 (183)
.........++++.+.+..+.+.++..+|+|+.+ .+..+++.+ |++. ..|++.. ..+...+..+..+.
T Consensus 92 -~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 92 -AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp -TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred -hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 0111223455678888888888899999999876 234456664 4433 3455443 44444555554566
Q ss_pred ccCCCCCCceeeee
Q 036195 151 VISIPQPSYTYEAT 164 (183)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (183)
.+.|++++|+.+..
T Consensus 171 g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 171 GCSIVFLHHASKGA 184 (279)
T ss_dssp CCEEEEEEEC----
T ss_pred CCEEEEEecCCCcc
Confidence 89999999998775
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.19 E-value=7.7e-12 Score=101.68 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=40.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 6899999999999999999999999999999999999988753
No 100
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.18 E-value=5.4e-12 Score=107.23 Aligned_cols=46 Identities=28% Similarity=0.358 Sum_probs=42.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
+|++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 4568999999999999999999999999999999999999877653
No 101
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.17 E-value=1.4e-11 Score=91.79 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=37.5
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.+++|++++|+||||||||||+++|+|. |..|.|.+++.++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLW 46 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchh
Confidence 4789999999999999999999999998 78999999887653
No 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.16 E-value=8.9e-12 Score=95.84 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=36.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSL 55 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~ 55 (183)
..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+++.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 3689999999999999999999999999986 688888877643
No 103
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.16 E-value=1e-11 Score=101.30 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=45.7
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
.++++ +++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.++..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 46664 4589999999999999999999999999999999999999987754
No 104
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.16 E-value=2e-13 Score=123.93 Aligned_cols=129 Identities=10% Similarity=-0.105 Sum_probs=75.5
Q ss_pred cccccce--ecCccEEEEEcCCCCcHHHHHHHH--------hcCCCCCCcEEEEEecCccccccccchheeehhhhccCC
Q 036195 7 PHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQL--------NDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLP 76 (183)
Q Consensus 7 ~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i--------~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp 76 (183)
.|+++++ +++|++++|+|||||||||+||++ .|..-|..+.. + +.+.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~----------------------~~~d 706 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V----------------------SIVD 706 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E----------------------ECCS
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c----------------------hHHH
Confidence 4555554 678999999999999999999999 56555543221 0 0000
Q ss_pred CCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCccccccc-ccceeecC
Q 036195 77 NLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVF-SSKLIITT 147 (183)
Q Consensus 77 ~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~-~~~~~~~~ 147 (183)
.+ +..+++.+......+.+|+++++ .+ +.+|..+ |+...-|+.....+ ..++..+.
T Consensus 707 ---~i------------~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~ 771 (934)
T 3thx_A 707 ---CI------------LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA 771 (934)
T ss_dssp ---EE------------EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH
T ss_pred ---HH------------HHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 11112222222333444455554 22 5677775 77888887655555 55556555
Q ss_pred cccccCCCCCCceeeeeecccceEEEE
Q 036195 148 PQTVISIPQPSYTYEATIRPRYELICI 174 (183)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (183)
.+..+.++++||+.+. ...+|+++.+
T Consensus 772 ~~~g~~vl~aTH~~el-~~lad~~~~v 797 (934)
T 3thx_A 772 TKIGAFCMFATHFHEL-TALANQIPTV 797 (934)
T ss_dssp HTTCCEEEEEESCGGG-GGGGGTCTTE
T ss_pred hcCCCEEEEEcCcHHH-HHHhccccee
Confidence 5457899999999554 4678876543
No 105
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.15 E-value=1.8e-11 Score=92.12 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=31.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceec
Confidence 5678899999999999999999999999996 4 466665443
No 106
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.15 E-value=9.6e-12 Score=95.79 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=22.4
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHh-cCC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLN-DMF 41 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~-gl~ 41 (183)
||++++|++++|+||||||||||+++|+ |++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6779999999999999999999999999 998
No 107
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.15 E-value=5.9e-12 Score=101.41 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=37.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEE---EecC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAI---YAVS 54 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~---~g~~ 54 (183)
.+|+++||+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 8999999999999999999999999988 99999999 6654
No 108
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.5e-11 Score=98.72 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=32.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCccc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQK 57 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~~ 57 (183)
++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|++++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence 46789999999999999999999999999999999999 8877653
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.13 E-value=5.6e-13 Score=116.55 Aligned_cols=137 Identities=12% Similarity=-0.063 Sum_probs=67.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchH-HHHHHHHc
Q 036195 20 IGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFP-CLERIYVH 97 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~-~l~vLe~l 97 (183)
+||+||||||||||+++|+|+..| ++|.|+++|.++...... .... ....++++++...++......+ .......+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~-~~~~-~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV-NEDK-WRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS-SSSC-CEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC-cccc-ceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999989 799999999875321100 0001 1123444444332222111111 11111111
Q ss_pred CCCCccCCCCCCCChhhhh-ee--cCchhhc---cc------ccccCcccccccccceee-cCcccccCCCCCCceeeee
Q 036195 98 GCPSLRKLPFSLESGKRNG-VL--IGEEEWW---NQ------LEWDDEATKHVFSSKLII-TTPQTVISIPQPSYTYEAT 164 (183)
Q Consensus 98 ~L~~L~~~~~~~LSgGqk~-~i--~~~~~w~---~~------l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 164 (183)
+... ...|.-... .+ ...|++. +| ....|+..+..+..++.. +.....+.+.+++||+..+
T Consensus 126 ~~~~------~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 126 AGEG------MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HCSS------SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred cCCc------cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 1110 111110000 11 2234443 44 677788777777777766 4455567777889998754
No 110
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.13 E-value=6.9e-13 Score=102.63 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=34.6
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
++++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA 66 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence 566776 899999999999999999999999999999999998763
No 111
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.09 E-value=1.5e-11 Score=101.55 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=43.3
Q ss_pred cccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCc
Q 036195 7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSL 55 (183)
Q Consensus 7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~ 55 (183)
++|+++.+++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 175 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence 45667778999999999999999999999999999998 89998777543
No 112
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.08 E-value=2.1e-12 Score=117.10 Aligned_cols=128 Identities=9% Similarity=-0.120 Sum_probs=75.7
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC 82 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~ 82 (183)
+.|+++++ +++|++++|+||||||||||||+++++... ..|. .+. ... ..++...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vp--------a~~--~~i~~~d------ 717 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVP--------AEE--ATIGIVD------ 717 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBS--------SSE--EEEECCS------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------ccc--------chh--hhhhHHH------
Confidence 46777666 568999999999999999999999865211 0010 000 000 0000000
Q ss_pred ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccccC
Q 036195 83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTVIS 153 (183)
Q Consensus 83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~~~ 153 (183)
.++..+++.+......+++|+|+++ .+ +.+|..+ |+..+-|+.....+. .++..+..+..+.
T Consensus 718 ---------~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t 788 (918)
T 3thx_B 718 ---------GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL 788 (918)
T ss_dssp ---------EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ---------HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe
Confidence 0112233334445567889999887 23 5677776 889999987666664 5666554445789
Q ss_pred CCCCCceeeee
Q 036195 154 IPQPSYTYEAT 164 (183)
Q Consensus 154 ~~~~~~~~~~~ 164 (183)
++++||+.+.+
T Consensus 789 vl~vTH~~el~ 799 (918)
T 3thx_B 789 TLFVTHYPPVC 799 (918)
T ss_dssp EEEECSCGGGG
T ss_pred EEEEeCcHHHH
Confidence 99999998766
No 113
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.08 E-value=9.9e-13 Score=120.56 Aligned_cols=136 Identities=9% Similarity=-0.143 Sum_probs=82.4
Q ss_pred cccccccee--cC-------ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cC
Q 036195 6 RPHLRYIED--DG-------VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KL 75 (183)
Q Consensus 6 ~~~l~~l~i--~~-------Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~l 75 (183)
+.|+.++++ ++ |++++|+||||||||||||++ |++.+-. .++ ++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a-------------------------qiG~~V 822 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA-------------------------QMGCYV 822 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH-------------------------TTTCCE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh-------------------------heeEEe
Confidence 457777664 44 899999999999999999999 9876411 011 11
Q ss_pred CCCcc---ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh-----eecCchhhc---ccccccCccc-ccccccce
Q 036195 76 PNLKS---ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-----VLIGEEEWW---NQLEWDDEAT-KHVFSSKL 143 (183)
Q Consensus 76 p~l~~---l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-----~i~~~~~w~---~~l~~~d~~~-~~~~~~~~ 143 (183)
|+... ++.. ++..++..+......+++|+++++ ..+.++.++ |+..+-|+.. ...+..++
T Consensus 823 pq~~~~l~v~d~--------I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il 894 (1022)
T 2o8b_B 823 PAEVCRLTPIDR--------VFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVV 894 (1022)
T ss_dssp ESSEEEECCCSB--------EEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHH
T ss_pred ccCcCCCCHHHH--------HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHH
Confidence 11100 0000 011223333333445677788776 236677775 6777777644 34455566
Q ss_pred eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195 144 IITTPQTVISIPQPSYTYEATIRPRYELICID 175 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (183)
..+..+..+.++++||+++.+...+|++++.+
T Consensus 895 ~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 895 KELAETIKCRTLFSTHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp HHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred HHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence 65554447889999999999998898877654
No 114
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.08 E-value=1.2e-11 Score=93.13 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~ 38 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE 38 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc
Confidence 78999999999999999999999999 999 999887653
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.07 E-value=2.4e-11 Score=92.21 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=37.7
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCcc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQ 56 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~ 56 (183)
.++|++++|+||||||||||+++|+|+++| +.|.|.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 578999999999999999999999999985 5788888776553
No 116
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.07 E-value=3.3e-11 Score=100.91 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=42.4
Q ss_pred ccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
+|+++-..+|++++|+|||||||||||++|+|++.|++|+|.+.+.++
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 455553478999999999999999999999999999999999998765
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.05 E-value=6.3e-11 Score=101.57 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=40.0
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
+.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 3478999999999999999999999999999999999999864
No 118
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=3.4e-11 Score=97.01 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=26.9
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCcc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQ 56 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~ 56 (183)
+++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+ .|+.++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccc
Confidence 457899999999999999999999999999999999998 776554
No 119
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.03 E-value=5.1e-11 Score=89.96 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=23.9
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999875
No 120
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.02 E-value=6.7e-11 Score=88.24 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.97 E-value=1.2e-10 Score=87.67 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred cccccceecCccEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEE
Q 036195 7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-----SDMSHKFAI 50 (183)
Q Consensus 7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~ 50 (183)
+++++|.+.+|+.++|+|+||||||||++.++|.. .|+.|.+.+
T Consensus 16 ~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 16 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 57888999999999999999999999999999998 888888765
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.95 E-value=9.9e-11 Score=96.22 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=37.2
Q ss_pred cceecC--ccEEEEEcCCCCcHHHHHHHHhcCCCCCC----cEEEEE
Q 036195 11 YIEDDG--VKIIGLYGVRGVGKSTLIKQLNDMFSDMS----HKFAIY 51 (183)
Q Consensus 11 ~l~i~~--Ge~~~liGpNGaGKSTLl~~i~gl~~p~~----G~I~~~ 51 (183)
+++|.+ |+.++|+||||||||||+++|+|+++|++ |+++++
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 446888 99999999999999999999999999999 888764
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.95 E-value=1.2e-10 Score=95.73 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=39.2
Q ss_pred cccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecC
Q 036195 7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVS 54 (183)
Q Consensus 7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~ 54 (183)
++++++.+.+|++++|+||||||||||+++|+|++.|+ +|.|...+.+
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 34556667899999999999999999999999999987 5776555443
No 124
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.94 E-value=4.6e-10 Score=84.28 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=30.0
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH 46 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G 46 (183)
+++.+|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.93 E-value=3.6e-10 Score=84.13 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
|++++|+||||||||||+++|++ |.+|.+.+++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence 78999999999999999999997 67899999987653
No 126
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.88 E-value=8.1e-10 Score=83.15 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=34.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
+..+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence 45789999999999999999999999987 88999987654
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.85 E-value=2.5e-10 Score=84.51 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQ 56 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~ 56 (183)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 589999999999999999999999998 899999988743
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.85 E-value=8.9e-10 Score=89.03 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC--------CCCCcEEEEEecCccc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF--------SDMSHKFAIYAVSLQK 57 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~ 57 (183)
=++++|+|+||||||||++.|.|+. .|+.|+|.++|.++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 3689999999999999999999997 7899999999987653
No 129
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.84 E-value=1.1e-09 Score=84.25 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=37.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
..+.++|++++|.|+|||||||++++|+++ .|+|.+.+++..
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 445689999999999999999999999998 788999887653
No 130
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.84 E-value=1.5e-09 Score=80.13 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK 47 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~ 47 (183)
++++.+| +.+|+||||||||||+++|.+++.+.+|.
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 3556788 99999999999999999999998877664
No 131
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.84 E-value=3.3e-10 Score=85.33 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=38.4
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE--EEEecCcc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF--AIYAVSLQ 56 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I--~~~g~~~~ 56 (183)
+..++|++++|+|||||||||++++|++.+. ..|.+ ++++.++.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 3468899999999999999999999999987 78988 88887653
No 132
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.82 E-value=7.9e-10 Score=85.82 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEEEec
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFAIYAV 53 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~~g~ 53 (183)
++++++|+||||||||||+++|+ |+..|++|+|.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 57999999999999999999999 999999999988764
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.82 E-value=1.3e-09 Score=80.73 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEE
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAI 50 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~ 50 (183)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36899999999999999999999999864 4566544
No 134
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.81 E-value=1.5e-09 Score=81.88 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=39.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
...+|++++|+|+|||||||++++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4678999999999999999999999999998999998887654
No 135
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.80 E-value=3e-10 Score=88.83 Aligned_cols=41 Identities=27% Similarity=0.193 Sum_probs=37.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------EEecCc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFA--------IYAVSL 55 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~--------~~g~~~ 55 (183)
.+|++++|+|||||||||++++|+ |+..|++|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 689999999999999999999999 99999999998 666655
No 136
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=1.4e-09 Score=91.00 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=28.0
Q ss_pred cceecCccE--EEEEcCCCCcHHHHHHHHhcCC
Q 036195 11 YIEDDGVKI--IGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 11 ~l~i~~Ge~--~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+|++++|++ +||+||||||||||+++|+|+.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 567999999 9999999999999999999984
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.77 E-value=5.2e-10 Score=82.68 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=35.6
Q ss_pred ccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195 8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK 47 (183)
Q Consensus 8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~ 47 (183)
.++++++.+|+.++|+||||+|||||+++|++.+.|.+|.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3568888999999999999999999999999999877773
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.77 E-value=6.1e-09 Score=79.91 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=36.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCcEEEEEecC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLND--MFSD-----MSHKFAIYAVS 54 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p-----~~G~I~~~g~~ 54 (183)
+++|++++|+||||||||||++.+++ +.+| ..|.+++++.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 89999999999999999999999999 5655 67888888875
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=8.8e-10 Score=89.44 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEEEecCcc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLND-MFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~~ 56 (183)
..+.|.||||+||||+++++++ ++.|+.|.+.++|.+..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 3489999999999999999999 89999999999887543
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=2.3e-09 Score=77.44 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCcc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSLQ 56 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~~ 56 (183)
+|+.++|+||||+|||||++++++...+ +| .+++.+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 8999999999999999999999999877 58 7777776553
No 141
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.75 E-value=1.6e-09 Score=96.77 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=37.0
Q ss_pred ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEE
Q 036195 6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKF 48 (183)
Q Consensus 6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I 48 (183)
+.+++++++. |++++|+||||||||||||+|+|+.. |+.|.+
T Consensus 566 ~~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 566 EFVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp CCCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 4677888888 99999999999999999999999974 677764
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.73 E-value=5.7e-09 Score=85.41 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=38.7
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCC----cE-EEEEecCc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMS----HK-FAIYAVSL 55 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~----G~-I~~~g~~~ 55 (183)
..+++|++++|+||||||||||++.+++.. +|++ |. |++++.+.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 468999999999999999999999999998 6666 68 88888754
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.72 E-value=7.3e-09 Score=81.97 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=38.3
Q ss_pred cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.+++ ++.+.+| ++|+||||||||||+++|+|...+ |.|.++|.++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 3455 4456777 999999999999999999999876 78999987764
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=8.6e-09 Score=85.55 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=37.5
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhc------------CCCCCCcEEEEEec
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLND------------MFSDMSHKFAIYAV 53 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~g------------l~~p~~G~I~~~g~ 53 (183)
.+.+|+.+||+|+||||||||+++|+| .+.|++|.+.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 578999999999999999999999999 66799999999874
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.69 E-value=5.9e-09 Score=83.88 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=40.5
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
++..+|++++|+|||||||||+++.|++.+.+..|+|.+.+.+..
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 346789999999999999999999999999999999999887754
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.68 E-value=1.6e-10 Score=93.92 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEEEecC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF----SDMSHKFAIYAVS 54 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~ 54 (183)
+.++|+||||+|||||+++|++.+ .+++|.+...+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 789999999999999999999998 6667766554443
No 147
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.68 E-value=8.9e-09 Score=75.47 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=33.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 579999999999999999999999875 78888876653
No 148
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.68 E-value=7.2e-09 Score=78.32 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=27.3
Q ss_pred cccceecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 9 LRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 9 l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.+++...+|++++|+||||||||||++.|++..+
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567778999999999999999999999999875
No 149
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.5e-08 Score=76.76 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=27.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999876
No 150
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.66 E-value=3.7e-09 Score=91.36 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=38.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEE-EEecCc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFA-IYAVSL 55 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~-~~g~~~ 55 (183)
.+.+|++++|+|+||||||||+++|++.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4789999999999999999999999999999987 785 676554
No 151
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.65 E-value=1e-08 Score=76.29 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCcEEEEEecCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSD-----------MSHKFAIYAVSL 55 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p-----------~~G~I~~~g~~~ 55 (183)
.++|+|+||||||||++.++|...+ ++|+|.++|.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999999865 478888877644
No 152
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.62 E-value=8.5e-09 Score=82.70 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=20.4
Q ss_pred ccccccceecCccEEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEEEecCcc
Q 036195 6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDM-FSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~~ 56 (183)
+.+++++++. ++|+||||||||||++.|.|. ..|++| +.+.|.++.
T Consensus 11 ~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 11 KSVKKGFEFT----LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE 57 (301)
T ss_dssp -------CEE----EEEEEETTSSHHHHHHHHHC------------------
T ss_pred EEEEcCCCEE----EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence 4567765542 399999999999999999998 889999 877776543
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.61 E-value=1.3e-08 Score=82.37 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=41.6
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.++..
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 3468899999999999999999999999999999999999887753
No 154
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.58 E-value=2.3e-08 Score=83.77 Aligned_cols=71 Identities=10% Similarity=-0.001 Sum_probs=54.2
Q ss_pred CCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195 105 LPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL 171 (183)
Q Consensus 105 ~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
.++..|||||+++ + + .+|..+ |+....|+..+..+..++.....+ ...++++||+. .++..||++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~-~~~~~~d~~ 406 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKN-TMFEKSDAL 406 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCH-HHHTTCSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCH-HHHHhCCEE
Confidence 3445699999982 1 2 345554 889999999999998888766543 56789999995 457889999
Q ss_pred EEEeeC
Q 036195 172 ICIDVD 177 (183)
Q Consensus 172 ~~~~~~ 177 (183)
|.|..+
T Consensus 407 ~~~~~~ 412 (430)
T 1w1w_A 407 VGVYRQ 412 (430)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999876
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.58 E-value=2.8e-08 Score=80.45 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVS 54 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~ 54 (183)
++||+||||||||||+++|++++. |++|.+.+-+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 999999999999999999999987 578887766554
No 156
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.56 E-value=4.6e-08 Score=80.33 Aligned_cols=64 Identities=11% Similarity=-0.009 Sum_probs=49.4
Q ss_pred CCCCC-CCChhhhhe------ec---------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeee
Q 036195 104 KLPFS-LESGKRNGV------LI---------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEAT 164 (183)
Q Consensus 104 ~~~~~-~LSgGqk~~------i~---------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (183)
++++. .+|+||+|+ ++ ++|..+ |++..-|+..+..+..++..+. ..+++++| .+.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc-
Confidence 56777 799999982 24 677775 8899999999999988887664 35666788 444
Q ss_pred ecccceEEEEe
Q 036195 165 IRPRYELICID 175 (183)
Q Consensus 165 ~~~~~~~~~~~ 175 (183)
.+|++++++
T Consensus 333 --~~~~i~~l~ 341 (359)
T 2o5v_A 333 --GAALTLRAQ 341 (359)
T ss_dssp --TCSEEEEEE
T ss_pred --cCCEEEEEE
Confidence 899999986
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.56 E-value=2.3e-08 Score=80.06 Aligned_cols=42 Identities=29% Similarity=0.330 Sum_probs=37.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCcc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQ 56 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~ 56 (183)
.+|++++++|||||||||+++.|++.+.+++| +|.+-+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 57999999999999999999999999998888 7888777654
No 158
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.55 E-value=2.7e-08 Score=89.31 Aligned_cols=134 Identities=9% Similarity=-0.147 Sum_probs=73.1
Q ss_pred cccccccee-cCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195 6 RPHLRYIED-DGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH 83 (183)
Q Consensus 6 ~~~l~~l~i-~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~ 83 (183)
+.+++++++ ++|++++|+||||||||||||+|+|+..+ ..|. .+.. . ...++.+.+ ++.
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa--------~--~~~i~~~~~---i~~ 655 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA--------Q--KVEIGPIDR---IFT 655 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS--------S--EEEECCCCE---EEE
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch--------h--cccceeHHH---HHh
Confidence 456777766 58999999999999999999999997422 2231 0100 0 011222111 111
Q ss_pred cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e---ecCchhhc---ccccccCcccccc-cccceeecCcccccCC
Q 036195 84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V---LIGEEEWW---NQLEWDDEATKHV-FSSKLIITTPQTVISI 154 (183)
Q Consensus 84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~---i~~~~~w~---~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~ 154 (183)
.. +..+......+.+|+++++ . .+.+|..+ |+..+-|+..... +..++..+..+..+.+
T Consensus 656 ~~------------~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v 723 (800)
T 1wb9_A 656 RV------------GAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT 723 (800)
T ss_dssp EE------------C-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE
T ss_pred hC------------CHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE
Confidence 11 1111112233456777665 2 25677775 6666666543333 2445555544347889
Q ss_pred CCCCceeeeeecccceE
Q 036195 155 PQPSYTYEATIRPRYEL 171 (183)
Q Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (183)
+++||+.+.+ ..+|++
T Consensus 724 l~~TH~~el~-~l~d~~ 739 (800)
T 1wb9_A 724 LFATHYFELT-QLPEKM 739 (800)
T ss_dssp EEECSCGGGG-GHHHHS
T ss_pred EEEeCCHHHH-HHhhhh
Confidence 9999998765 466654
No 159
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.55 E-value=1.7e-08 Score=84.37 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=29.0
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+|+++.|+.++|+|+|||||||||++|++..
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 5679999999999999999999999999983
No 160
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.54 E-value=2.8e-08 Score=79.46 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=42.1
Q ss_pred ccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
+++++.+|++++++|+||+||||+++.|++++.+..|+|.+.+.+++.
T Consensus 91 ~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 91 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 344444899999999999999999999999999999999999988764
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.53 E-value=4e-08 Score=76.29 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=35.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
++++.+| +.|+||||+|||||+++|++... .|.+.+++.++
T Consensus 45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 45 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 3456777 89999999999999999999985 88999988654
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.51 E-value=4.8e-08 Score=76.97 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=35.5
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
++++.+| ++|+||||+|||||+++|++... .|.|.+++.++.
T Consensus 69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~ 110 (278)
T 1iy2_A 69 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 110 (278)
T ss_dssp TCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred CCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHH
Confidence 3456777 89999999999999999999985 889999886543
No 163
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.49 E-value=4.5e-08 Score=80.02 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
++.+++|+|++|||||||++.|+|...+.+|+|.+.+.++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 478999999999999999999999999999999998877653
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.47 E-value=9.2e-08 Score=72.15 Aligned_cols=38 Identities=18% Similarity=0.029 Sum_probs=31.3
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+.+|++++|+||||||||||++.+++ .+..+.+++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 89999999999999999999999999 444445555543
No 165
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.46 E-value=3.1e-09 Score=96.37 Aligned_cols=137 Identities=11% Similarity=-0.088 Sum_probs=93.2
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc-ccccc-------cchHHHHHHHHcCCCCc-
Q 036195 32 TLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS-ICHEA-------LAFPCLERIYVHGCPSL- 102 (183)
Q Consensus 32 TLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~-l~~~~-------~~~~~l~vLe~l~L~~L- 102 (183)
|...+..+.++|.+++|.++|+++..... .+..+.+ .++.+... ..... ......+.+..+++..+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~---~~v~~~l--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTE---LSISEEL--EFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHH---SBHHHHH--HHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred cchhcccccCChHhcCcEECCccHHHhhh---CCHHHHH--HHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 34456667789999999999988753211 0111111 11111110 00000 01234567888999876
Q ss_pred cCCCCCCCChhhhhe------ecCchh--hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195 103 RKLPFSLESGKRNGV------LIGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL 171 (183)
Q Consensus 103 ~~~~~~~LSgGqk~~------i~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
.++++.+|||||+|+ +..+|+ .+ ||....|+.....+..++..+..+ ..+|+++|||++++. .||++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~-~aD~i 535 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIR-NADHI 535 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHH-TCSEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEE
Confidence 689999999999983 244454 54 899999999999999999988766 899999999998764 59999
Q ss_pred EEEe
Q 036195 172 ICID 175 (183)
Q Consensus 172 ~~~~ 175 (183)
+.|.
T Consensus 536 i~lg 539 (916)
T 3pih_A 536 IDIG 539 (916)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9983
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.46 E-value=4.9e-08 Score=72.84 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----CC------CcEEEEEecCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS-----DM------SHKFAIYAVSL 55 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~-----p~------~G~I~~~g~~~ 55 (183)
.++|+|+||||||||++.++|... |+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 579999999999999999999853 43 56777776543
No 167
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.45 E-value=1.3e-07 Score=78.77 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=34.0
Q ss_pred ecCccEEEEEcCCCCcHHHHHH--HHhcCCCCCCc-----EEEEEecC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIK--QLNDMFSDMSH-----KFAIYAVS 54 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~--~i~gl~~p~~G-----~I~~~g~~ 54 (183)
+++|++++|+||||||||||++ +++++.+++.| .++|++..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 8999999999999999999999 44577766444 78888775
No 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.45 E-value=7e-08 Score=70.34 Aligned_cols=33 Identities=30% Similarity=0.224 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
.|++++|+|||||||||++++|++.+.+ +.+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4688999999999999999999998754 55554
No 169
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=79.56 Aligned_cols=37 Identities=30% Similarity=0.205 Sum_probs=28.8
Q ss_pred ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195 6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH 46 (183)
Q Consensus 6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G 46 (183)
+++++++++. ++|+||||||||||+++|+|+..|..|
T Consensus 24 ~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 24 KSVKRGFEFT----LMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp TTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEecCCCEE----EEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 4566666543 499999999999999999999875544
No 170
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.44 E-value=7.4e-08 Score=78.44 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=42.6
Q ss_pred ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
.++++ +.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 45553 457899999999999999999999999999888999988776654
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.41 E-value=7.7e-08 Score=79.47 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=35.0
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
.++++++ .+++|++++|+||||||||||+++|+|. .+|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 4556644 6999999999999999999999999985 4677665
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.39 E-value=7.9e-08 Score=70.72 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=32.9
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSL 55 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~ 55 (183)
.+|++++|+|++||||||+.+.|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47899999999999999999999998866 56 666676544
No 173
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.8e-07 Score=70.07 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=24.8
Q ss_pred ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
...++++ ++.+|++++|+||+||||||+.+.|+..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456644 57899999999999999999999999765
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.33 E-value=2.8e-07 Score=69.28 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=27.6
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
++.+|++++|+|++||||||+.+.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 378899999999999999999999999874
No 175
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.31 E-value=6.3e-08 Score=73.65 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF---SDMSHKFAI 50 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~ 50 (183)
+.+++|+||+||||||+.++|++.+ .+++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 667777765
No 176
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.30 E-value=2.1e-08 Score=72.38 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCCCCCCChhhhhee--c----------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195 103 RKLPFSLESGKRNGVL--I----------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP 167 (183)
Q Consensus 103 ~~~~~~~LSgGqk~~i--~----------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (183)
.++++.+|||||+|++ + .+|+.+ ||....|+..+..+...+..+..+ ..+++++|||. ...+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH-HHHHh
Confidence 5678999999999843 2 567876 899999999999999998877655 67899999999 56799
Q ss_pred cceEEEEee
Q 036195 168 RYELICIDV 176 (183)
Q Consensus 168 ~~~~~~~~~ 176 (183)
||+++.++-
T Consensus 129 ~d~ii~l~~ 137 (148)
T 1f2t_B 129 ADHVIRISL 137 (148)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEc
Confidence 999999973
No 177
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.27 E-value=4.9e-07 Score=65.05 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=22.9
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+++.+| +.+|+|||||||||++.+|.-.
T Consensus 19 i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 19 VEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 344544 9999999999999999999743
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.25 E-value=1e-07 Score=72.14 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=38.7
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSL 55 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~ 55 (183)
.+.+.+|.++.|+|++||||||+.+.|++.+.|..| .+.+++..+
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456789999999999999999999999999987888 777776543
No 179
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.22 E-value=5.7e-07 Score=78.45 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=38.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEecCcc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAVSLQ 56 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~ 56 (183)
.+.+|+.+.|+||||+|||||+++|+++..+.. |.+.+.+.+..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 478999999999999999999999999999887 77777776543
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.21 E-value=2.4e-07 Score=72.37 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=30.8
Q ss_pred ccccccc--eecC---ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 6 RPHLRYI--EDDG---VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 6 ~~~l~~l--~i~~---Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|+++ ++.+ |++++|+|++||||||+.++|++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567644 5788 9999999999999999999999865
No 181
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.21 E-value=7.4e-07 Score=74.63 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=41.2
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
++++.++++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus 92 ~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 92 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 34444899999999999999999999999999999999998887654
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=7.9e-07 Score=68.04 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=29.8
Q ss_pred ecCccEEEEEcCCCCcHHHHHH-HHhcCCCCCCcEEEEEec
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIK-QLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~-~i~gl~~p~~G~I~~~g~ 53 (183)
+.+|+++.|+||||||||||+. ++.+..+...+.+++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 8999999999999999999954 545555444455555543
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.19 E-value=9.5e-07 Score=66.24 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+++|+|||||||||+.++|+++ |...++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence 6899999999999999999994 55566543
No 184
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.16 E-value=5.3e-07 Score=72.15 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ 57 (183)
|++++++|+||+||||++..|++.+.+..++|.+.+.+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 89999999999999999999999999999999998887654
No 185
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.14 E-value=7.6e-07 Score=65.76 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=33.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
...+|.++.|+|++||||||+.+.|+..+.+..+.+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 35689999999999999999999999998877777754
No 186
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.10 E-value=6.8e-07 Score=77.10 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=34.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
+|++++|+||||+|||||+++|++...+..|.|.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 7999999999999999999999999988888887655
No 187
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.09 E-value=2.1e-06 Score=66.06 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.9
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
..+|.+++|.|++||||||+++.|+..+.+ .+.+....
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 348999999999999999999999999988 77776543
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.07 E-value=1.9e-06 Score=72.25 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------------CCCcEEEEEecCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS------------DMSHKFAIYAVSL 55 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~------------p~~G~I~~~g~~~ 55 (183)
.++|+|+||+|||||++.++|... |.+|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999854 6778888887643
No 189
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.07 E-value=6.7e-07 Score=76.61 Aligned_cols=69 Identities=9% Similarity=-0.136 Sum_probs=56.3
Q ss_pred CCCCCC-Chhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195 105 LPFSLE-SGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI 172 (183)
Q Consensus 105 ~~~~~L-SgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (183)
+|+..| ||||+|+ +..+| ..+ ||....|+.++..+..++..+.. ..+|+++||+++.+ +.||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~-~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIA-ARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHH-HHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-HhCCEEE
Confidence 567788 9999983 35666 665 88999999999999998887753 68899999999855 5699999
Q ss_pred EEee
Q 036195 173 CIDV 176 (183)
Q Consensus 173 ~~~~ 176 (183)
+++-
T Consensus 469 ~~~~ 472 (517)
T 4ad8_A 469 KVEK 472 (517)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9953
No 190
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.04 E-value=2.5e-06 Score=64.32 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=22.2
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
+++.+| +.+|+|||||||||++.+|.-
T Consensus 19 i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 19 VEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 345554 999999999999999998863
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.04 E-value=2.1e-06 Score=64.10 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.04 E-value=1.1e-06 Score=70.12 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=27.9
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
-.++.++||.||+|||||||.+.|++++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3578899999999999999999999998763
No 193
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.03 E-value=2.2e-06 Score=70.42 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=30.4
Q ss_pred CccE-EEEEcCCCCcHHHHHHHHhcCCC-----------CCCcEEEEEecCc
Q 036195 16 GVKI-IGLYGVRGVGKSTLIKQLNDMFS-----------DMSHKFAIYAVSL 55 (183)
Q Consensus 16 ~Ge~-~~liGpNGaGKSTLl~~i~gl~~-----------p~~G~I~~~g~~~ 55 (183)
.|-. ++|+|++|||||||++.++|... |+.|.|.++|.++
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 3444 99999999999999999999875 5678888876543
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.99 E-value=2.9e-06 Score=70.42 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=34.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCcEEEEEec
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM-----------FSDMSHKFAIYAV 53 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl-----------~~p~~G~I~~~g~ 53 (183)
.+..|..++|+|+||+|||||++.|+|. +.|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3678889999999999999999999998 6678888877653
No 195
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.99 E-value=3.2e-06 Score=63.42 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=26.2
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..+|.+++|+||+||||||+.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 57899999999999999999999988763
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.97 E-value=2.6e-06 Score=69.76 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=34.8
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-EEEec
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF-AIYAV 53 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I-~~~g~ 53 (183)
+.+|+++.|.||||+|||||+..++....+..|.+ ++++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 67999999999999999999999999988888876 45544
No 197
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.96 E-value=5.3e-06 Score=60.38 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+|..++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 198
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.96 E-value=5.1e-06 Score=70.94 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred ccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 8 HLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 8 ~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
+++++ .+.+| +.|+||||+|||||+++|++... .+.+.+++.++.
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~ 101 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 101 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence 44444 46667 89999999999999999999874 788999887654
No 199
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.90 E-value=3.8e-06 Score=62.74 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4589999999999999999998875 4556655443
No 200
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.89 E-value=4.4e-06 Score=61.07 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 201
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.89 E-value=9.3e-06 Score=58.45 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 202
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.87 E-value=7.8e-06 Score=73.61 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=38.0
Q ss_pred ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
..+++++.+.+++.+.|+||||+|||||+++|++.+.+. .+.+++.
T Consensus 227 ~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~ 272 (806)
T 1ypw_A 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGP 272 (806)
T ss_dssp GGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHH
T ss_pred HHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEch
Confidence 345678899999999999999999999999999997543 3556654
No 203
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.87 E-value=1.4e-06 Score=78.55 Aligned_cols=83 Identities=14% Similarity=-0.064 Sum_probs=69.1
Q ss_pred HHHHHHcCCCCc-cCCCCCCCChhhhhee------cCchh--hc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195 91 LERIYVHGCPSL-RKLPFSLESGKRNGVL------IGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS 158 (183)
Q Consensus 91 l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++.+..+++..+ .++++.+|||||+|+| ..++. ++ ||...-|+.....+...+..++.+ ..+|+++|
T Consensus 360 l~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVe 438 (842)
T 2vf7_A 360 LDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVE 438 (842)
T ss_dssp HHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEEC
T ss_pred HHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEc
Confidence 345778899876 7999999999999843 45653 44 889999999999999999888665 89999999
Q ss_pred ceeeeeecccceEEEEe
Q 036195 159 YTYEATIRPRYELICID 175 (183)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (183)
||++ +++.+|+|+.++
T Consensus 439 Hdl~-~l~~aD~ii~lg 454 (842)
T 2vf7_A 439 HDLD-VIRRADWLVDVG 454 (842)
T ss_dssp CCHH-HHTTCSEEEEEC
T ss_pred CCHH-HHHhCCEEEEeC
Confidence 9998 567899999985
No 204
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.86 E-value=7.2e-06 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4789999999999999999997433
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.86 E-value=9e-06 Score=60.01 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.7
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
|++..+|.+++|+|++||||||+.+.|+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456678899999999999999999999876
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=6.4e-06 Score=65.79 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.+++|+|++|||||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
No 207
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.84 E-value=9.6e-06 Score=59.47 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 208
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.82 E-value=1.3e-06 Score=79.39 Aligned_cols=81 Identities=10% Similarity=-0.094 Sum_probs=66.3
Q ss_pred HHHHcCCCCc-cCCCCCCCChhhhhee------cCc--hhhc---ccccccCcccccccccceeecCcccccCCCCCCce
Q 036195 93 RIYVHGCPSL-RKLPFSLESGKRNGVL------IGE--EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 93 vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~--~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
.++.+|+..+ .++++.+|||||+|+| ..+ +..+ ||....|+.....+...+..++. ...+|++++||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 4677888866 7999999999999832 333 3554 89999999999999999888865 48999999999
Q ss_pred eeeeecccceEEEEe
Q 036195 161 YEATIRPRYELICID 175 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (183)
+++ ++.||+|+.++
T Consensus 566 l~~-i~~ADrIi~Lg 579 (972)
T 2r6f_A 566 EDT-MLAADYLIDIG 579 (972)
T ss_dssp HHH-HHSCSEEEEEC
T ss_pred HHH-HHhCCEEEEeC
Confidence 986 56799999885
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.81 E-value=1.1e-05 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.2
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999963
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.78 E-value=7.9e-06 Score=68.56 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
++.+++++||||+||||++..|+..+.+..++|.+-+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999988776643
No 211
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.78 E-value=8.2e-06 Score=71.97 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.8
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEE
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKF 48 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I 48 (183)
+++++++..++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 567889999999999999999999999977654 56766
No 212
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.77 E-value=1.3e-05 Score=65.33 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=28.8
Q ss_pred ccccceecCccEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEE
Q 036195 8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFA 49 (183)
Q Consensus 8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~ 49 (183)
+|+++.+.-- .++|+|++|||||||++.|+| ++++.+|.++
T Consensus 26 ~l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 26 ALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CC----CCCC-EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccCC-EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 4554433222 899999999999999999999 5566666553
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=3.2e-06 Score=68.34 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=32.2
Q ss_pred ecCccE--EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKI--IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~--~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 678887 999999999999999999998877666544433
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.76 E-value=8.5e-06 Score=60.13 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEe
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYA 52 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g 52 (183)
.+++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999886543 35555544
No 215
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.76 E-value=1.1e-05 Score=62.63 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.3
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 467788999999999999999999998764 35567776554
No 216
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.74 E-value=1.5e-05 Score=58.83 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=20.4
Q ss_pred cccccccccee--cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 4 LYRPHLRYIED--DGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 4 ~~~~~l~~l~i--~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
....+++++++ ++. .++++|++|+|||||++.+.+
T Consensus 9 ~~~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 9 WFRDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 34567776664 333 779999999999999999998
No 217
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.74 E-value=1.2e-06 Score=79.93 Aligned_cols=81 Identities=10% Similarity=-0.093 Sum_probs=66.2
Q ss_pred HHHHcCCCCc-cCCCCCCCChhhhhe--e----cCc--hhhc---ccccccCcccccccccceeecCcccccCCCCCCce
Q 036195 93 RIYVHGCPSL-RKLPFSLESGKRNGV--L----IGE--EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT 160 (183)
Q Consensus 93 vLe~l~L~~L-~~~~~~~LSgGqk~~--i----~~~--~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
.++.+|+..+ .++++.+|||||+|+ | ..+ +..+ ||....|+.....+...+..++. ...+|+++|||
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHd 582 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHD 582 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCC
Confidence 4677788866 789999999999983 2 344 3454 89999999999999999888865 48999999999
Q ss_pred eeeeecccceEEEEe
Q 036195 161 YEATIRPRYELICID 175 (183)
Q Consensus 161 ~~~~~~~~~~~~~~~ 175 (183)
+++ ++.||+|+.|+
T Consensus 583 l~~-i~~ADrIi~Lg 596 (993)
T 2ygr_A 583 EDT-IEHADWIVDIG 596 (993)
T ss_dssp HHH-HHTCSEEEEEC
T ss_pred HHH-HHhCCEEEEec
Confidence 986 56899999885
No 218
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.74 E-value=1.5e-05 Score=65.37 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=55.0
Q ss_pred CCCCCCChhhhhee------------cCc-hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeeccc
Q 036195 105 LPFSLESGKRNGVL------------IGE-EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPR 168 (183)
Q Consensus 105 ~~~~~LSgGqk~~i------------~~~-~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (183)
.++..+||||++++ .++ |..+ |+....|+..+..+...+..+... ..++++||+.+ +.+.+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI--PQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC--SEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC--CeEEEEEChHH-HHhhC
Confidence 56678999999843 345 6665 889999999999998888776432 46889999986 67999
Q ss_pred ceEEEEee
Q 036195 169 YELICIDV 176 (183)
Q Consensus 169 ~~~~~~~~ 176 (183)
|+++.++-
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999974
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.71 E-value=2.4e-05 Score=59.90 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSH 46 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G 46 (183)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998766555
No 220
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.70 E-value=1.4e-05 Score=65.84 Aligned_cols=38 Identities=18% Similarity=-0.021 Sum_probs=33.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
.+..+.|+||+||||||+++.+++...+..+.|.+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 57789999999999999999999988888888888653
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.70 E-value=5.9e-06 Score=63.83 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999843
No 222
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.68 E-value=2.3e-05 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 223
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.68 E-value=2.2e-05 Score=67.15 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=38.8
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEEEecCccc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFAIYAVSLQK 57 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~~~ 57 (183)
+++.++..+.|.|++||||||+++.|.. +.+++.|++.+...|...
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 5567889999999999999999999876 667788889888777653
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.67 E-value=1.7e-05 Score=64.74 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
+.+|+++.|.||||+|||||+..++.......|.+.+-+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 679999999999999999998777765544556655543
No 225
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.64 E-value=2.4e-05 Score=58.12 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=32.6
Q ss_pred ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcC--------CCCCCcEEEEEe
Q 036195 6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDM--------FSDMSHKFAIYA 52 (183)
Q Consensus 6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl--------~~p~~G~I~~~g 52 (183)
++++++++ .++. .++++|++|+|||||++.+.+- ..++.+.+.+++
T Consensus 13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 45666554 4555 4789999999999999999872 233456666654
No 226
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.61 E-value=3.9e-05 Score=55.75 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998763
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.60 E-value=4e-05 Score=57.79 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
.+-+++|.|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 4445543
No 228
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.59 E-value=2e-05 Score=64.39 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=29.6
Q ss_pred ccccccc--eecCccE--EEEEcCCCCcHHHHHHHHhcCC
Q 036195 6 RPHLRYI--EDDGVKI--IGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 6 ~~~l~~l--~i~~Ge~--~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+++.+ .+++|++ ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455544 4788988 9999999999999999999865
No 229
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=4.7e-05 Score=58.82 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=28.6
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
+......-+.|+||+|+|||||+++|++..... -+.+++.++
T Consensus 40 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 333333448899999999999999999976422 356665544
No 230
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.57 E-value=5.3e-05 Score=62.13 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCcEEEEEe
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLND-----------MFSDMSHKFAIYA 52 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~g-----------l~~p~~G~I~~~g 52 (183)
|-.++|+|.+|+|||||++.+++ -+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3467788887765
No 231
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=4.4e-05 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997643
No 232
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.56 E-value=4.5e-05 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998744
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.56 E-value=4.2e-05 Score=54.90 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 036195 19 IIGLYGVRGVGKSTLIKQL 37 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i 37 (183)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 234
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.56 E-value=5.4e-05 Score=56.04 Aligned_cols=33 Identities=30% Similarity=0.267 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
..+++|+|++||||||+.+.|+.. |...++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 458999999999999999999985 666666543
No 235
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.55 E-value=9.4e-06 Score=60.82 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKF 48 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I 48 (183)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999988775433333
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.55 E-value=4.1e-05 Score=59.56 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++.|+||+|||||||.+.|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 237
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.54 E-value=3e-05 Score=61.66 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.7
Q ss_pred ccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
.++.+.++..+.|.||+|+|||||++++++... .+.+.+++.
T Consensus 42 ~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~ 83 (301)
T 3cf0_A 42 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP 83 (301)
T ss_dssp HHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred HHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence 345578899999999999999999999999763 455666543
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.54 E-value=3.6e-05 Score=56.20 Aligned_cols=28 Identities=43% Similarity=0.341 Sum_probs=24.0
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.+..+.++.|+|++||||||+.+.++..
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999999844
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.52 E-value=4.9e-05 Score=62.90 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=27.7
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 458999999999999999999999999875
No 240
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.52 E-value=3.9e-05 Score=62.79 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHK 47 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl~~p~~G~ 47 (183)
++|+|++|+|||||++.|.+...+..+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 5899999999999999998875544443
No 241
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.51 E-value=5.4e-05 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.50 E-value=4.7e-05 Score=55.38 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.48 E-value=5.8e-05 Score=56.24 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 036195 20 IGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl 40 (183)
+.|+||+|||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988644
No 244
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.48 E-value=5.8e-05 Score=59.03 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999853
No 245
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.46 E-value=5.8e-05 Score=59.66 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
...+.|+||+|+||||+.+.|++...+..+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~ 80 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 80 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence 3689999999999999999999998877776544
No 246
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.45 E-value=7.5e-05 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~g 39 (183)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 247
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.45 E-value=8.6e-05 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.43 E-value=8.4e-05 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997643
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.42 E-value=9.4e-05 Score=54.40 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 250
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.42 E-value=5e-05 Score=55.75 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
.+++|+|++|||||||+..|+..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 378999999999999999999876543
No 251
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.41 E-value=8.1e-05 Score=58.98 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
...+.++.|.||+||||||+.+.|+.-+. .|.+.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 45678999999999999999999986542 35566654
No 252
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.41 E-value=5.1e-05 Score=63.85 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=35.0
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSL 55 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~ 55 (183)
+.+|+++.|.|++|+|||||+..+++...+..| .|.+.+.+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 899999999999999999999999988766555 676665543
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.0001 Score=54.85 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
+|-+++|.|+.||||||+.+.|+.-+.. .|.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~ 36 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL-KRDVYL 36 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh-cCCEEE
Confidence 4678999999999999999999876543 234433
No 254
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.39 E-value=0.00012 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-C----CCCCCc
Q 036195 19 IIGLYGVRGVGKSTLIKQLND-M----FSDMSH 46 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~g-l----~~p~~G 46 (183)
.++|+|++|+|||||++.+.+ . ..|+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 578999999999999965554 3 456655
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.38 E-value=0.00011 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=23.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 256
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.37 E-value=0.00011 Score=53.82 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.35 E-value=0.0001 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998854
No 258
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.35 E-value=0.00012 Score=54.52 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
..+|-+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999854
No 259
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
++.|.|+.||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987653
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.31 E-value=8.7e-05 Score=56.75 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLN 38 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~ 38 (183)
+.+|+.+.+.||+||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999999999887664
No 261
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.30 E-value=0.00014 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 262
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.29 E-value=0.00018 Score=58.38 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=29.4
Q ss_pred cCcc--EEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEEE
Q 036195 15 DGVK--IIGLYGVRGVGKSTLIKQLNDMFSDMS--HKFAIY 51 (183)
Q Consensus 15 ~~Ge--~~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~ 51 (183)
..+. .+.|.||+|+|||||++.+++...+.. ..++++
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 4556 899999999999999999999887653 344444
No 263
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00016 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
=.++|+|+.|+|||||++.+.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998753
No 264
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.26 E-value=0.00016 Score=56.92 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.00028 Score=57.20 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=25.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+++|+++.|.||+|+|||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999988874
No 266
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.25 E-value=9.9e-05 Score=59.59 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=30.0
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEEEe
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----SHKFAIYA 52 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g 52 (183)
..+..+.|.||+|+|||||++.+++...+. ...++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 457899999999999999999999887553 33455554
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00018 Score=52.92 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+..+-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998754
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00012 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=18.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
No 269
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.23 E-value=0.00014 Score=52.99 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC----CCCCc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF----SDMSH 46 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~----~p~~G 46 (183)
.-.++|+|++|+|||||++.+.+-. .|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 3468999999999999999999863 45555
No 270
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.22 E-value=0.00021 Score=53.85 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=22.9
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998654
No 271
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.22 E-value=7.2e-05 Score=54.14 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=25.0
Q ss_pred cccccccee-cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 6 RPHLRYIED-DGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 6 ~~~l~~l~i-~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
+.+++++-- ++.-.++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 334444322 4555899999999999999999874
No 272
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.21 E-value=0.00018 Score=52.94 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=28.5
Q ss_pred ccccccccceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 4 LYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 4 ~~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+...+++.+.-.+.=.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 4556666665555667999999999999999999754
No 273
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.21 E-value=0.00016 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998764
No 274
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998864
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.21 E-value=0.00018 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.0002 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 277
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.00017 Score=58.77 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
...-.++++|+||+|||||++.++|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345589999999999999999999875
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00021 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 279
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00021 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++-++.|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
No 280
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.19 E-value=0.00017 Score=53.43 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA 49 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 49 (183)
..+.|.||+|+|||||++.++.........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 68899999999999999999987755444444
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.19 E-value=0.0002 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.18 E-value=0.00019 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 283
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.18 E-value=0.00023 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.18 E-value=0.00021 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987643
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.17 E-value=0.00025 Score=51.06 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 286
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.16 E-value=0.00022 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998865
No 287
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.16 E-value=0.0002 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 288
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.15 E-value=0.00023 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 289
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.15 E-value=0.00026 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.268 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998743
No 290
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.15 E-value=0.00022 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 291
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00028 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
....+++|.|+.||||||+.+.|+.-+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988543
No 292
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.15 E-value=0.00023 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998653
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.15 E-value=0.00025 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+||.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 294
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.15 E-value=2.1e-05 Score=58.00 Aligned_cols=74 Identities=8% Similarity=0.021 Sum_probs=55.6
Q ss_pred CccCCCCCCCChhhhhe--e----cC----chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195 101 SLRKLPFSLESGKRNGV--L----IG----EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP 167 (183)
Q Consensus 101 ~L~~~~~~~LSgGqk~~--i----~~----~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (183)
.....++..|||||+++ + +. .+.++ |+....|+..+..+..++.....+ ..++++||+.. +++.
T Consensus 56 ~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~--~~~ivith~~~-~~~~ 132 (173)
T 3kta_B 56 GKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE--SQFIVITLRDV-MMAN 132 (173)
T ss_dssp SSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSCHH-HHTT
T ss_pred CccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC--CEEEEEEecHH-HHHh
Confidence 34567788999999982 2 22 23554 889999999999999888776544 45778888864 6799
Q ss_pred cceEEEEeeC
Q 036195 168 RYELICIDVD 177 (183)
Q Consensus 168 ~~~~~~~~~~ 177 (183)
+|++|++...
T Consensus 133 ad~i~~v~~~ 142 (173)
T 3kta_B 133 ADKIIGVSMR 142 (173)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEEEEEec
Confidence 9999999864
No 295
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.15 E-value=6.9e-05 Score=63.37 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=32.6
Q ss_pred ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
+++.|. +-+|+..+|+||+|+|||||++.|+.-.....+.+.+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 344443 7889999999999999999999988765544444544
No 296
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=0.00028 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.14 E-value=0.0003 Score=52.23 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.0
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+-+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999998643
No 298
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.00022 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 299
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.14 E-value=0.00023 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|++|+|||||++.|.|-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999865
No 300
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.14 E-value=0.00022 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998764
No 301
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.13 E-value=0.00024 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 302
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.13 E-value=0.00024 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999988754
No 303
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.12 E-value=0.00022 Score=52.11 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
--.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998763
No 304
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00024 Score=53.65 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998544
No 305
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.12 E-value=0.00025 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.12 E-value=0.00035 Score=50.10 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.11 E-value=0.0003 Score=54.65 Aligned_cols=25 Identities=44% Similarity=0.654 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999865
No 308
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.11 E-value=0.00036 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.11 E-value=0.00024 Score=60.27 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.3
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+.+| +.|+||+|+|||||++++++..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4455 7899999999999999999864
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.11 E-value=0.00024 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998874
No 311
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.10 E-value=0.00033 Score=52.76 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
.+..+.|.||+|+|||||++.++......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999998776443
No 312
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.10 E-value=0.00025 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999876
No 313
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.10 E-value=0.0003 Score=52.52 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
..-++||+|+.||||||+.+.++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 314
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.00043 Score=55.60 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=31.2
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcC-CCC------CCcEEEEEecC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDM-FSD------MSHKFAIYAVS 54 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl-~~p------~~G~I~~~g~~ 54 (183)
+++|+++.|.||+|+|||||+..++.- ..| ..+.+++....
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 789999999999999999998887764 344 33445565543
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.09 E-value=0.0003 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998743
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.08 E-value=0.00024 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.07 E-value=0.00029 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 318
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.07 E-value=0.00037 Score=50.54 Aligned_cols=23 Identities=43% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998864
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.06 E-value=0.0003 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 320
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998853
No 321
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.06 E-value=0.00032 Score=55.88 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|.+|+|||||++.+.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.06 E-value=0.0003 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999999863
No 323
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.06 E-value=0.00032 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|+.|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998754
No 324
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.05 E-value=0.00035 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++..+.|.||+|+||||+++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999865
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.05 E-value=0.00031 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
=.++++|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.05 E-value=0.00035 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.04 E-value=0.00032 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.03 E-value=0.00037 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 329
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.03 E-value=0.00029 Score=57.82 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 036195 20 IGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl 40 (183)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 330
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.02 E-value=0.00035 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 036195 20 IGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 20 ~~liGpNGaGKSTLl~~i~gl 40 (183)
++++|+.|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
No 331
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.02 E-value=0.00019 Score=56.99 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++-++||.||+||||||+.+.++..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999988744
No 332
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.01 E-value=0.00033 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 333
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.01 E-value=0.00038 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
-.++|+|+.|+|||||++.+.|-.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999999863
No 334
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.00037 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhc
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 335
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.01 E-value=0.00037 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|||||||++.++|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00047 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++-+++|+||.||||||+.+.|+--
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999999743
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.00 E-value=0.00036 Score=50.83 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.00 E-value=0.00036 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58899999999999999998753
No 339
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.99 E-value=0.00038 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998764
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=0.00038 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
No 341
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.99 E-value=0.00033 Score=54.82 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987653
No 342
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.98 E-value=4.6e-05 Score=62.46 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.6
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHh
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLN 38 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~ 38 (183)
++.+| +..|+|||||||||++.+|.
T Consensus 22 ~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 22 KFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp ECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34554 99999999999999999987
No 343
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.98 E-value=0.00043 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
No 344
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.97 E-value=2.7e-05 Score=66.58 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.6
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
|++.+| +.+|+|+||||||||+.+|..+
T Consensus 56 l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 346777 9999999999999999999666
No 345
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.97 E-value=0.0003 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999999764
No 346
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.97 E-value=0.00042 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 347
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.00032 Score=54.76 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=26.1
Q ss_pred ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+.+.++..+.|.||+|+|||||++.++...
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345677889999999999999999999876
No 348
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.96 E-value=0.00039 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998653
No 349
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.96 E-value=0.00042 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998764
No 350
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.95 E-value=0.00042 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998653
No 351
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.95 E-value=0.00053 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSH 46 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G 46 (183)
-.++++|.+|+|||||++.+.|-.....|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48899999999999999999987654444
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.94 E-value=0.00047 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999865
No 353
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00042 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 354
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00042 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 355
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.94 E-value=0.00044 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998764
No 356
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.94 E-value=0.00045 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.=.++++|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445578999999999999999998753
No 357
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.93 E-value=0.0006 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.93 E-value=0.00049 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|.|+.||||||+.+.|+--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.00065 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.2
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+..+.|.||.|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999988765
No 360
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.92 E-value=0.00053 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 361
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.00024 Score=56.73 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF 48 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I 48 (183)
.+..+.|.||+|+|||||++.++....+....+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~ 68 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV 68 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 346788999999999999999998775443333
No 362
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.92 E-value=0.00051 Score=53.86 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999864
No 363
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.00051 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
--.++|+|+.|+|||||++.+++-.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999988764
No 364
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.90 E-value=0.00048 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999863
No 365
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.90 E-value=0.00022 Score=64.15 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=29.3
Q ss_pred ccceecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++.+.+++.+.|+||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678999999999999999999999999864
No 366
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.90 E-value=0.00069 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 367
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.90 E-value=0.0007 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999865
No 368
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.90 E-value=0.00051 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998754
No 369
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.89 E-value=0.00076 Score=56.09 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.8
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.-....++.|+|++||||||+.+.++.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998754
No 370
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.88 E-value=0.00056 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.88 E-value=0.00058 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.334 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
|-.+.|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997644
No 372
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.87 E-value=0.00068 Score=51.37 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=24.9
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.+|-++.|.|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876654
No 373
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.87 E-value=0.0005 Score=50.74 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+.=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3344468999999999999999999864
No 374
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.87 E-value=0.00055 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 375
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.00051 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 376
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.87 E-value=0.00055 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58899999999999999998653
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.86 E-value=0.00053 Score=49.43 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 036195 19 IIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~g 39 (183)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 378
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.86 E-value=0.00058 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|+.|||||||++.|.|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 379
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.86 E-value=0.00042 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998764
No 380
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00052 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999988764
No 381
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.86 E-value=0.00032 Score=52.46 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 382
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.00054 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.311 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999998765
No 383
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.85 E-value=0.00018 Score=60.26 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=33.0
Q ss_pred ceecCc--cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 12 IEDDGV--KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 12 l~i~~G--e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
+.+.++ .+++++|++|+||||+...|++.+.....+|.+-+.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 444434 59999999999999999999998765555666655443
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.85 E-value=0.00056 Score=52.43 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=22.0
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..+|-++.|.|+.||||||+.+.|+.-+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999987664
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.85 E-value=0.00057 Score=49.94 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.85 E-value=0.00064 Score=53.55 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 036195 18 KIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~g 39 (183)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 387
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.0006 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.=.++++|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3347899999999999999999854
No 388
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.83 E-value=0.00056 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.00062 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.=.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3346899999999999999999875
No 390
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.83 E-value=0.0006 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998763
No 391
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.83 E-value=0.00062 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998654
No 392
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.83 E-value=0.00061 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
=.++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 36889999999999999999864
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.82 E-value=0.00066 Score=55.10 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988664
No 394
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.82 E-value=0.00062 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999998764
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.82 E-value=0.00085 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=23.1
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+-.+.|+|+.||||||+.+.|+.-+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998654
No 396
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.81 E-value=0.00062 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.81 E-value=0.00076 Score=51.97 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.7
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.+|.++.|.|++||||||+++.|+..+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999876643
No 398
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00064 Score=49.43 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 399
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.80 E-value=0.00065 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998653
No 400
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.80 E-value=0.00056 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 401
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.80 E-value=0.00073 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988543
No 402
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.80 E-value=0.00075 Score=56.67 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=31.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
++.++.++|++|+||||++..|+..+....-+|.+-..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4679999999999999999999988776555666655443
No 403
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.78 E-value=0.00076 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987643
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.78 E-value=0.00052 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998875
No 405
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.77 E-value=0.00074 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00069 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.76 E-value=0.00092 Score=50.68 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
+|-++.+-|+.||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999877643
No 408
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.76 E-value=0.00084 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=22.0
Q ss_pred cccceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 9 LRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 9 l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++++.-++-=.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --------CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred cCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444455578999999999999999998754
No 409
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.75 E-value=0.00082 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3368899999999999999998653
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.75 E-value=0.00099 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999864
No 411
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.74 E-value=0.0008 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5889999999999999888764
No 412
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.72 E-value=0.00097 Score=50.75 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.4
Q ss_pred eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+.+..++.|+||.||||+|..+.|+--+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777899999999999999999887543
No 413
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.72 E-value=0.0008 Score=50.41 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 414
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.72 E-value=0.0009 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 415
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.72 E-value=0.0011 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 416
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.71 E-value=0.00084 Score=48.31 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..+..+.|.||.|+||||+++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4466788999999999999999987653
No 417
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.71 E-value=0.00075 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.++|+|..|+|||||++.+.|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999998753
No 418
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.70 E-value=0.001 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.077 Sum_probs=22.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
-.|..+.|+||+|+|||||...++.-
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46778999999999999998888754
No 419
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.70 E-value=0.00082 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998753
No 420
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.70 E-value=0.0009 Score=54.40 Aligned_cols=39 Identities=38% Similarity=0.590 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS 54 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 54 (183)
..-+++|+|+.|+|||||++.+++.+....-+|.+-+.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 445899999999999999999987754434444444333
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.69 E-value=0.001 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
.+.|.||+|+|||||++.++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999987653
No 422
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=50.67 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=23.7
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+.....+.|.||.|+||||+.+.++...
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555668899999999999999998854
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=50.71 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+|-+++|.|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987663
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.69 E-value=0.0018 Score=45.58 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=30.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL 55 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 55 (183)
..+.-+-|.||.|+|||++.+.|........+.+.++....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~ 62 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence 45667889999999999999999987654444433555433
No 425
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.68 E-value=0.0011 Score=50.28 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=26.1
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.+|.++.+-|+.||||||+.+.|.-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999988765
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.68 E-value=0.00053 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999987653
No 427
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.68 E-value=0.00098 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
No 428
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.67 E-value=0.0013 Score=50.33 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=25.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.+|-++.+.|+.||||||+.+.+...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999876643
No 429
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.67 E-value=0.00092 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999865
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.66 E-value=0.0011 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.66 E-value=0.0012 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+.++.|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998665
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0011 Score=50.03 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 433
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.65 E-value=0.001 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
--.++|+|+.|+|||||++.++.-..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999988886543
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.64 E-value=0.0013 Score=53.40 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.++.|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45699999999999999999998765
No 435
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.60 E-value=0.00095 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
No 436
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.60 E-value=0.0009 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+..+.|.||+|+|||||+++|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 437
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.59 E-value=0.0013 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.8
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
+++|+++.|.||+|+|||||...++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999887774
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58899999999999999998654
No 439
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.58 E-value=0.00017 Score=60.11 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=30.1
Q ss_pred cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195 11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS 45 (183)
Q Consensus 11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~ 45 (183)
.+++.+|++++|+||||||||||+++|+++..|.+
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 36677899999999999999999999999987754
No 440
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.001 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..+.|.||+|+||||+++.+++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999998753
No 441
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.56 E-value=0.00048 Score=51.40 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988643
No 442
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0013 Score=49.47 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 443
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.53 E-value=0.00079 Score=48.97 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.=.++++|+.|+|||||++.+.+-
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4447899999999999999998643
No 444
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.52 E-value=0.0013 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 37889999999999999888753
No 445
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.52 E-value=0.00089 Score=51.90 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=24.4
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..++-+++|.|+.||||||+.+.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999999887763
No 446
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.51 E-value=0.0012 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.147 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
.|.-+.|.|++|+||||+...+.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 688899999999999999988877
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0016 Score=49.02 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999988654
No 448
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.50 E-value=0.001 Score=54.37 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=28.8
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE-EEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK-FAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~-I~~~g 52 (183)
+.+|+++.|.|++|+|||||...++.-.....+. ++++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6799999999999999999987776543323333 44544
No 449
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.49 E-value=0.0019 Score=51.70 Aligned_cols=27 Identities=7% Similarity=0.056 Sum_probs=24.1
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+.+|+++.|.|++|+|||||+..++.-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777643
No 450
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.48 E-value=0.0015 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998875
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.48 E-value=0.00052 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999988876
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.45 E-value=0.002 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHhc
Q 036195 16 GVKIIGLYGVRGVGKSTLI-KQLND 39 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl-~~i~g 39 (183)
+|.++.+.||.|+||||++ +++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997 55543
No 453
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.45 E-value=0.00072 Score=60.59 Aligned_cols=31 Identities=26% Similarity=0.195 Sum_probs=25.8
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM 44 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~ 44 (183)
+..|+.+.|+||+||||||++.++.+...+.
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~ 136 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP 136 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5678999999999999999999887654443
No 454
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.45 E-value=0.0018 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..++.|+||+|||||||...++.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4588999999999999999998664
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.43 E-value=0.002 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=21.5
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLND 39 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~g 39 (183)
.-.|.-+.|.|++|+|||||...+..
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34677899999999999999777654
No 456
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.43 E-value=0.0012 Score=54.59 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=28.2
Q ss_pred ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++|.|. +.+|+..+|+|+.|+|||||+..|+...
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 344443 8999999999999999999998887753
No 457
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.41 E-value=0.0022 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 458
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.39 E-value=0.0015 Score=53.00 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=31.3
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 52 (183)
+.+|+++.|.|++|+|||||+..++.......+.|.|..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 899999999999999999998887766544555665544
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.39 E-value=0.0012 Score=52.29 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.2
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++....+.|.||.|+|||+|.+.|+.-.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444567788999999999999999765
No 460
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.39 E-value=0.0005 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
.-+.|.||+|+|||||++.++..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 33779999999999999999874
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.35 E-value=0.003 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+-.++++|.+|+|||||++.+.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998754
No 462
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.35 E-value=0.0016 Score=52.49 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999987763
No 463
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.34 E-value=0.0025 Score=47.91 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI 50 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 50 (183)
|.+++|=|+-||||||+++.|.-.+.. ...+.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence 568899999999999999999887642 334444
No 464
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0028 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.7
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHH
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQL 37 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i 37 (183)
+.+|+++-|.|+.|+|||||.--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999996544
No 465
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.30 E-value=0.002 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|.+++|||||++.++|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
No 466
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.27 E-value=0.0024 Score=54.05 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=28.1
Q ss_pred ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++|.| .+.+|+..+|+|+.|+|||||+..|+.-.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 44444 38999999999999999999998887654
No 467
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.0026 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998754
No 468
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.22 E-value=0.0031 Score=49.54 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.6
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++..+.|.||.|+||||+.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999887765
No 469
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.20 E-value=0.0029 Score=52.51 Aligned_cols=24 Identities=50% Similarity=0.681 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+++|.||+|||||||...|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999887654
No 470
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.20 E-value=0.0023 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|++|+|||||++.++|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 471
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.18 E-value=0.0029 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
-.+||+|+.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 472
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.16 E-value=0.0036 Score=50.44 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=29.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
+|..+-|.||.|+||||+.+.++..+......+.+.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 45689999999999999999999887644444555543
No 473
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.15 E-value=0.004 Score=47.74 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ 56 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~ 56 (183)
+.-++.++|+.|+||||++..++..+. ..-++.+-+.+.+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 445888999999999999999986665 4335655554443
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.13 E-value=0.0019 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHH-HhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQ-LNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~-i~gl 40 (183)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 588999999999999998 5554
No 475
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.11 E-value=0.00091 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 036195 18 KIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 18 e~~~liGpNGaGKSTLl~~i~gl 40 (183)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35889999999999999887653
No 476
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.06 E-value=0.0029 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.+|=.++|+|+.|+|||||++.+++-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999885
No 477
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.004 Score=50.26 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+..+.|.||.|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998764
No 478
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.004 Score=49.86 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=23.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999765
No 479
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.04 E-value=0.0042 Score=49.53 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+..+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.04 E-value=0.004 Score=52.07 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=25.6
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS 42 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~ 42 (183)
+.+|+++.|.|++|+|||||...++.-..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999887776543
No 481
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.04 E-value=0.002 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 482
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.03 E-value=0.0041 Score=48.17 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.3
Q ss_pred ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
..+...+-|.||.|+||||+.+.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455678899999999999999998863
No 483
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.99 E-value=0.0034 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
++..++++|+.|+|||||++.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 484
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.98 E-value=0.0035 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.--.++|+|..|+|||||++.|.|-.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 33489999999999999999999864
No 485
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.97 E-value=0.0059 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999997765
No 486
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.95 E-value=0.00061 Score=50.19 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988754
No 487
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.95 E-value=0.0031 Score=53.57 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+++|.|. +.+|+..+|+|+.|+|||||+..|+.-.
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHH
Confidence 3444443 8999999999999999999998877654
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.94 E-value=0.0069 Score=46.65 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=28.9
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEec
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAV 53 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~ 53 (183)
..+..+-|.||.|+|||++.+.|+.......+ -+.++..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 34567889999999999999999988754433 3445543
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.94 E-value=0.0043 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+..+.|.||.|+||||+.+.++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999876
No 490
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.91 E-value=0.0037 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 17 VKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 17 Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
--+++|+|+.++|||||++.|.|-.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999864
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.91 E-value=0.0042 Score=50.35 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
++..+.|.||+|+||||+.+.|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578899999999999999999876
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.89 E-value=0.0055 Score=49.70 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.4
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+...+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678899999999999999998865
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.88 E-value=0.0041 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMFSD 43 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~~p 43 (183)
.+.|.||+|+|||||.+.|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4889999999999999999988754
No 494
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.87 E-value=0.005 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
.+..+++|+|++|+||||++..|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999943
No 495
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.86 E-value=0.005 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.++++|+.|+|||||++.++|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999854
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.83 E-value=0.006 Score=48.63 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=22.8
Q ss_pred cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 15 DGVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
.+..-+-|.||.|+|||+|.+.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568899999999999999998764
No 497
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.83 E-value=0.0057 Score=48.49 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 53 (183)
.|.++.|.||.|+|||||++.++.-. |.++++..
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~ 63 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR 63 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence 46899999999999999999987654 35666543
No 498
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.82 E-value=0.0032 Score=51.10 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 036195 19 IIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 19 ~~~liGpNGaGKSTLl~~i~gl 40 (183)
-++|+|..+||||||++.+++-
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 499
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.82 E-value=0.0039 Score=51.04 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDM 40 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl 40 (183)
++..++++|..|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999986
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.81 E-value=0.0056 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195 16 GVKIIGLYGVRGVGKSTLIKQLNDMF 41 (183)
Q Consensus 16 ~Ge~~~liGpNGaGKSTLl~~i~gl~ 41 (183)
+|.++.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998754
Done!