Query 036196
Match_columns 271
No_of_seqs 218 out of 531
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.2 2.6E-11 5.7E-16 83.9 5.9 47 148-194 3-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.2 2E-11 4.3E-16 85.7 4.8 48 147-194 10-60 (60)
3 PF00010 HLH: Helix-loop-helix 99.0 5.6E-10 1.2E-14 78.7 4.5 44 147-190 7-55 (55)
4 KOG1319 bHLHZip transcription 98.2 9.9E-07 2.1E-11 79.7 3.0 48 148-195 69-123 (229)
5 KOG1318 Helix loop helix trans 98.0 5.6E-06 1.2E-10 81.1 4.9 52 142-194 235-290 (411)
6 KOG4304 Transcriptional repres 97.5 6.1E-05 1.3E-09 69.4 2.7 49 146-195 38-94 (250)
7 PLN03217 transcription factor 97.2 0.00087 1.9E-08 54.2 5.5 48 153-200 19-72 (93)
8 KOG3561 Aryl-hydrocarbon recep 96.8 0.0014 2.9E-08 69.2 4.3 45 148-192 27-75 (803)
9 KOG2483 Upstream transcription 96.6 0.0041 8.9E-08 57.2 6.1 55 142-196 60-117 (232)
10 KOG3960 Myogenic helix-loop-he 96.3 0.0061 1.3E-07 57.4 5.3 52 147-198 124-177 (284)
11 KOG2588 Predicted DNA-binding 95.6 0.02 4.4E-07 61.4 5.8 55 143-198 279-334 (953)
12 KOG4029 Transcription factor H 94.5 0.037 8.1E-07 49.4 3.6 53 148-200 116-172 (228)
13 KOG0561 bHLH transcription fac 94.5 0.018 3.8E-07 55.8 1.7 46 149-194 68-115 (373)
14 KOG3560 Aryl-hydrocarbon recep 83.7 1 2.2E-05 47.0 3.3 43 144-187 29-75 (712)
15 KOG3558 Hypoxia-inducible fact 76.8 1.8 4E-05 46.0 2.6 41 148-188 53-97 (768)
16 KOG4447 Transcription factor T 75.2 1.6 3.4E-05 39.1 1.4 43 149-191 86-130 (173)
17 KOG3898 Transcription factor N 61.5 9.7 0.00021 35.4 3.7 45 147-191 78-125 (254)
18 KOG3910 Helix loop helix trans 60.9 6.8 0.00015 40.7 2.7 53 146-198 531-587 (632)
19 KOG3559 Transcriptional regula 60.4 8.7 0.00019 39.3 3.3 40 149-188 9-52 (598)
20 TIGR00986 3a0801s05tom22 mitoc 43.1 10 0.00022 33.3 0.6 38 154-191 49-86 (145)
21 PF04281 Tom22: Mitochondrial 33.3 18 0.00038 31.3 0.6 40 152-191 49-88 (137)
22 KOG4447 Transcription factor T 26.3 38 0.00082 30.6 1.4 22 149-170 30-51 (173)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.21 E-value=2.6e-11 Score=83.95 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhHHHhhhcCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 036196 148 HAKAKKEKLGDRITALQQLVSP---FGKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~---~~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
.||.||++|++.|..|+.+||. ..|+|+++||.+||+||+.|+.+++
T Consensus 3 ~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 3 RERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999994 6689999999999999999999986
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.20 E-value=2e-11 Score=85.66 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 036196 147 AHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
..||.||++|++.|..|+.+||+. .|+|+++||+.||+||++|+.+++
T Consensus 10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999 789999999999999999999863
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=98.99 E-value=5.6e-10 Score=78.67 Aligned_cols=44 Identities=25% Similarity=0.538 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhhhHHHhhhcCCCC-----CCCCchhhHHHHHHHHHHHH
Q 036196 147 AHAKAKKEKLGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFLH 190 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~LVP~~-----~KtDtASVLdEAI~YIKfLQ 190 (271)
..||+||++|++.|..|+.+||.. .|+|+++||..||+||+.||
T Consensus 7 ~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 7 ERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 458999999999999999999987 67999999999999999997
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.18 E-value=9.9e-07 Score=79.69 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCC-------CCCCchhhHHHHHHHHHHHHHHHHH
Q 036196 148 HAKAKKEKLGDRITALQQLVSPF-------GKTDTASVLHEAMGYIRFLHDQVQV 195 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~~-------~KtDtASVLdEAI~YIKfLQ~QVq~ 195 (271)
.||+||+-|+.-..-||.|||.+ .|+.+|-||..+|+||.+|+.++..
T Consensus 69 aEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k 123 (229)
T KOG1319|consen 69 AEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK 123 (229)
T ss_pred HHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999955 3778999999999999999876643
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.02 E-value=5.6e-06 Score=81.10 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=45.0
Q ss_pred CCCCchHHHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHHHHH
Q 036196 142 NPSSTAHAKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 142 ~p~s~~seR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
+-|.. -||+||++||+||..|..|||.+ .|..|..||.-+.+||+.||.--+
T Consensus 235 d~HNe-VERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 235 DNHNE-VERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 33444 48999999999999999999988 367799999999999999987665
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.49 E-value=6.1e-05 Score=69.37 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=43.4
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC--------CCCCchhhHHHHHHHHHHHHHHHHH
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF--------GKTDTASVLHEAMGYIRFLHDQVQV 195 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~--------~KtDtASVLdEAI~YIKfLQ~QVq~ 195 (271)
+. ||+||.|||+=|..|+.|||-. .|++||.||+=|++|+|.||.+.+.
T Consensus 38 l~-EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 38 LL-EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 45 8999999999999999999933 6788999999999999999987643
No 7
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.17 E-value=0.00087 Score=54.19 Aligned_cols=48 Identities=35% Similarity=0.548 Sum_probs=42.0
Q ss_pred HHHhhhhHHHhhhcCCCC------CCCCchhhHHHHHHHHHHHHHHHHHhcCcc
Q 036196 153 KEKLGDRITALQQLVSPF------GKTDTASVLHEAMGYIRFLHDQVQVLCSPY 200 (271)
Q Consensus 153 ReKI~ERi~aLQ~LVP~~------~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~ 200 (271)
-+.|+|-+..||+|+|.. .|...+-||.|+..||+.||.+|..|+...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL 72 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999954 456778899999999999999999998643
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=96.76 E-value=0.0014 Score=69.21 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCCC----CCCchhhHHHHHHHHHHHHHH
Q 036196 148 HAKAKKEKLGDRITALQQLVSPFG----KTDTASVLHEAMGYIRFLHDQ 192 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~~~----KtDtASVLdEAI~YIKfLQ~Q 192 (271)
.||+||+|+|.=|..|-.|||.+. |+||-.||..||.+||.++++
T Consensus 27 ~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 27 IEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 389999999999999999999886 899999999999999999986
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=96.64 E-value=0.0041 Score=57.21 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=44.8
Q ss_pred CCCCchHHHHHHHHhhhhHHHhhhcCCCCCC---CCchhhHHHHHHHHHHHHHHHHHh
Q 036196 142 NPSSTAHAKAKKEKLGDRITALQQLVSPFGK---TDTASVLHEAMGYIRFLHDQVQVL 196 (271)
Q Consensus 142 ~p~s~~seR~RReKI~ERi~aLQ~LVP~~~K---tDtASVLdEAI~YIKfLQ~QVq~L 196 (271)
..++.+-||+||..|.+.+..|+.+||...- -++++||+.|+.||+.|+.+....
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 3455566899999999999999999997732 237999999999999988766443
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.33 E-value=0.0061 Score=57.43 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhhhHHHhhh-cCCCCC-CCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 147 AHAKAKKEKLGDRITALQQ-LVSPFG-KTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~-LVP~~~-KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
+-||+|=.|+||-|.+|.+ -+++-+ .+-|..||-.||+||..||+-++.+..
T Consensus 124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578888999999999965 455554 489999999999999999999888875
No 11
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=95.58 E-value=0.02 Score=61.44 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCCchHHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 143 PSSTAHAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 143 p~s~~seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
.|.+- ||+=|--||+||..|+.+||+- -|+.+..+|.-||+||++|+..-+.+..
T Consensus 279 AHN~I-EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 279 AHNII-EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred hhhHH-HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence 45554 8999999999999999999988 6899999999999999999988766654
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=94.54 E-value=0.037 Score=49.42 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhhHHHhhhcCCC----CCCCCchhhHHHHHHHHHHHHHHHHHhcCcc
Q 036196 148 HAKAKKEKLGDRITALQQLVSP----FGKTDTASVLHEAMGYIRFLHDQVQVLCSPY 200 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~----~~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~ 200 (271)
.||.|=+-+|..+..||.+||. -.|+-|...|-.||.||++|+.-++.-...+
T Consensus 116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 3788888999999999999994 4578999999999999999999887766654
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=94.54 E-value=0.018 Score=55.78 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhHHHhhhcCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 036196 149 AKAKKEKLGDRITALQQLVSP--FGKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP~--~~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
||+|=.-||--|..|+.|+|. +.|+.||-||+.+.+||..|..+-.
T Consensus 68 ERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 68 ERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999995 4789999999999999998876543
No 14
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=83.70 E-value=1 Score=47.00 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=37.5
Q ss_pred CCchHHHHHHHHhhhhHHHhhhcCC----CCCCCCchhhHHHHHHHHH
Q 036196 144 SSTAHAKAKKEKLGDRITALQQLVS----PFGKTDTASVLHEAMGYIR 187 (271)
Q Consensus 144 ~s~~seR~RReKI~ERi~aLQ~LVP----~~~KtDtASVLdEAI~YIK 187 (271)
.|.++ |+-|+|||--+..|-.|+| .+.|+|+-|||.-++-|++
T Consensus 29 kSNPS-KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 29 KSNPS-KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cCCcc-hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34554 7788999999999999999 4589999999999999985
No 15
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=76.75 E-value=1.8 Score=45.96 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHH
Q 036196 148 HAKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRF 188 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKf 188 (271)
++|.||-|=++-|..|..++|-- ..+|||||+--||-|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 47999999999999999999943 458999999999999974
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=75.22 E-value=1.6 Score=39.08 Aligned_cols=43 Identities=26% Similarity=0.477 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhHHHhhhcCC--CCCCCCchhhHHHHHHHHHHHHH
Q 036196 149 AKAKKEKLGDRITALQQLVS--PFGKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP--~~~KtDtASVLdEAI~YIKfLQ~ 191 (271)
||+|-.-|++-|.+||.++| +..|..+.--|.-|..||-||-.
T Consensus 86 erqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 86 ERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 67888899999999999999 55888999999999999999853
No 17
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=61.53 E-value=9.7 Score=35.37 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHH
Q 036196 147 AHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~ 191 (271)
+-||.|-..+|+-+.+|++++|.+ .|+-|..-|.-|-+||..|++
T Consensus 78 aRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred chhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 348888899999999999999954 567788888777778877764
No 18
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=60.89 E-value=6.8 Score=40.73 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=42.4
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCCCC----CCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPFGK----TDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~~K----tDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
.+-||.|=..|||-|+.|-++.=---| --|--||+.|+.-|-.|++||++--.
T Consensus 531 NARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNL 587 (632)
T KOG3910|consen 531 NARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNL 587 (632)
T ss_pred hhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccC
Confidence 456788888999999999887654333 34678999999999999999976543
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=60.39 E-value=8.7 Score=39.35 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHH
Q 036196 149 AKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRF 188 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKf 188 (271)
+|.||||=|-.|..|-.|+|-. +..|||+|+.-+--|||-
T Consensus 9 A~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 9 ARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 6999999999999999999944 569999999999999985
No 20
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=43.13 E-value=10 Score=33.34 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=31.6
Q ss_pred HHhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHH
Q 036196 154 EKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 154 eKI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~ 191 (271)
|-|.|||.+|..+||+....--.+...-+..++|.+=.
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~s 86 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTLS 86 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998877777777778777776643
No 21
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=33.30 E-value=18 Score=31.31 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHH
Q 036196 152 KKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 152 RReKI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~ 191 (271)
.-|-|.|||.+|..+||+....-..+.+.-+..++|.+=.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~ 88 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFS 88 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999988776666777777766666543
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=26.28 E-value=38 Score=30.55 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHHHhhhcCCCC
Q 036196 149 AKAKKEKLGDRITALQQLVSPF 170 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP~~ 170 (271)
|+.|..+++++..-|+.|+|+.
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCC
Confidence 6888999999999999999965
Done!