Query 036196
Match_columns 271
No_of_seqs 218 out of 531
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.4 9.5E-14 3.3E-18 105.9 5.0 53 147-199 12-65 (82)
2 4ati_A MITF, microphthalmia-as 99.4 2E-13 7E-18 110.7 5.5 64 134-198 21-88 (118)
3 4h10_B Circadian locomoter out 99.3 3.1E-12 1E-16 96.7 6.3 51 148-198 15-66 (71)
4 1a0a_A BHLH, protein (phosphat 99.3 5.3E-13 1.8E-17 98.0 0.0 51 143-194 5-62 (63)
5 1an4_A Protein (upstream stimu 99.2 2.1E-12 7.3E-17 93.8 2.9 48 146-193 10-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.2 9.6E-13 3.3E-17 99.5 -1.5 47 144-191 13-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.1 2.9E-11 9.8E-16 91.5 4.8 53 146-198 7-61 (83)
8 1hlo_A Protein (transcription 99.1 3E-11 1E-15 91.1 4.6 53 146-198 17-71 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.1 5.5E-11 1.9E-15 92.0 5.0 53 146-198 11-66 (88)
10 3u5v_A Protein MAX, transcript 99.0 1.5E-10 5.1E-15 88.0 3.1 56 146-201 10-69 (76)
11 1nlw_A MAD protein, MAX dimeri 98.8 4.8E-09 1.6E-13 80.1 5.5 53 146-198 6-61 (80)
12 4f3l_A Mclock, circadian locom 98.7 1.6E-08 5.4E-13 91.5 5.5 49 144-193 16-65 (361)
13 2ql2_B Neurod1, neurogenic dif 98.5 1.4E-07 4.9E-12 68.6 5.0 48 147-194 8-58 (60)
14 1mdy_A Protein (MYOD BHLH doma 98.5 1.1E-07 3.6E-12 71.0 4.2 48 146-193 17-66 (68)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 3.1E-08 1.1E-12 90.9 0.8 49 143-192 16-68 (387)
16 2lfh_A DNA-binding protein inh 97.9 2.4E-06 8.3E-11 64.4 1.6 43 149-191 22-67 (68)
17 4ath_A MITF, microphthalmia-as 97.9 1.2E-05 4.2E-10 62.6 5.0 46 153-198 4-53 (83)
18 4aya_A DNA-binding protein inh 97.1 0.00066 2.3E-08 54.1 5.8 49 149-197 33-84 (97)
19 3fx7_A Putative uncharacterize 53.6 5.8 0.0002 31.3 1.9 45 152-204 46-90 (94)
20 2fhx_A SPM-1; metallo-beta-lac 44.5 10 0.00035 30.9 2.1 31 164-194 215-245 (246)
21 1f1f_A Cytochrome C6; heme, pr 36.6 55 0.0019 22.3 4.6 40 153-192 48-87 (89)
22 1m2x_A Class B carbapenemase B 36.5 15 0.00051 29.7 1.8 32 164-195 190-221 (223)
23 1a7t_A Metallo-beta-lactamase; 29.1 39 0.0013 27.4 3.2 31 164-194 200-230 (232)
24 1gdv_A Cytochrome C6; RED ALGA 27.9 96 0.0033 20.7 4.6 37 155-191 46-82 (85)
25 3ph2_B Cytochrome C6; photosyn 25.6 1.1E+02 0.0038 20.4 4.6 38 154-192 46-84 (86)
26 1cyi_A Cytochrome C6, cytochro 24.4 1.2E+02 0.004 20.7 4.6 37 154-191 47-84 (90)
27 1c6r_A Cytochrome C6; electron 23.4 1.2E+02 0.004 20.6 4.4 37 154-191 48-85 (89)
28 3dmi_A Cytochrome C6; electron 22.5 1.1E+02 0.0037 20.7 4.1 38 154-191 47-84 (88)
29 1xkm_B Distinctin chain B; por 22.4 84 0.0029 19.4 3.0 20 176-195 3-22 (26)
30 2y8b_A Metallo-B-lactamase; hy 21.9 25 0.00086 29.6 0.8 32 164-195 233-264 (265)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.43 E-value=9.5e-14 Score=105.91 Aligned_cols=53 Identities=34% Similarity=0.484 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcCc
Q 036196 147 AHAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCSP 199 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~ 199 (271)
..||+||++|+++|.+|+.|||++ .|+|+|+||.+||+||++||.+++.|...
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998 89999999999999999999999998863
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.40 E-value=2e-13 Score=110.65 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=49.6
Q ss_pred cccccCCCCCCCchHHHHHHHHhhhhHHHhhhcCCCCC----CCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 134 SKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFG----KTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 134 ~kK~~~a~~p~s~~seR~RReKI~ERi~aLQ~LVP~~~----KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
..|.+....+|++. ||+||++|+++|..|+.|||++. |+|+|+||..||+||++||.+++.|..
T Consensus 21 ~~k~~~kr~~Hn~~-ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 21 LAKERQKKDNHNLI-ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445567665 89999999999999999999874 678999999999999999999999985
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=96.73 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 148 HAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 148 seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
.||+||++||++|..|+.|||+. .|+|+++||..||+||+.||.++..|+-
T Consensus 15 iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 15 SEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 48999999999999999999975 5999999999999999999999988864
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.26 E-value=5.3e-13 Score=98.00 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=44.6
Q ss_pred CCCchHHHHHHHHhhhhHHHhhhcCCCC-------CCCCchhhHHHHHHHHHHHHHHHH
Q 036196 143 PSSTAHAKAKKEKLGDRITALQQLVSPF-------GKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 143 p~s~~seR~RReKI~ERi~aLQ~LVP~~-------~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
.|.++ ||.||++|++.|..|+.|||++ +|..+|+||+.||+||+.||.+|+
T Consensus 5 ~H~~a-Er~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 5 SHKHA-EQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp GGGGG-THHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred chhHH-HHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 34555 8999999999999999999965 566799999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.25 E-value=2.1e-12 Score=93.76 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=44.2
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCCC------CCCchhhHHHHHHHHHHHHHHH
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPFG------KTDTASVLHEAMGYIRFLHDQV 193 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~~------KtDtASVLdEAI~YIKfLQ~QV 193 (271)
...||+||++|++.|..|+.|||++. |+|+|+||.+||+||+.||.+.
T Consensus 10 ~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 10 NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 44599999999999999999999886 7899999999999999999875
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.19 E-value=9.6e-13 Score=99.52 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.7
Q ss_pred CCchHHHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHH
Q 036196 144 SSTAHAKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 144 ~s~~seR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~ 191 (271)
|+.+ ||+||++||+.|..|+.|||.+ .|+|+|+||+.||+|||.||.
T Consensus 13 H~~~-ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 13 HSQI-EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred cchH-HHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4444 8999999999999999999976 799999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.14 E-value=2.9e-11 Score=91.50 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=48.8
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
+..||+||++|++.|..|+.+||.+ .|+++++||..||+||+.|+.+++.|..
T Consensus 7 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999974 7899999999999999999999988875
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.14 E-value=3e-11 Score=91.13 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=49.3
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
...||+||.+|++.|..|+.+||.+ .|+++++||..||+||+.||.+++.|..
T Consensus 17 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 17 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999976 6899999999999999999999999875
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.11 E-value=5.5e-11 Score=92.04 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=48.4
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
+..||+||++|++.|..|+.+||.. .|+++++||..||+||++|+.+.+.|..
T Consensus 11 n~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999975 5999999999999999999999987764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.00 E-value=1.5e-10 Score=88.00 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=48.5
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC---CCC-CchhhHHHHHHHHHHHHHHHHHhcCccc
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF---GKT-DTASVLHEAMGYIRFLHDQVQVLCSPYL 201 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~---~Kt-DtASVLdEAI~YIKfLQ~QVq~Ls~~~~ 201 (271)
.+.||+||++|++.|..|+.+||.+ .|. .|..||..||+||++||.++++++..-+
T Consensus 10 N~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~ 69 (76)
T 3u5v_A 10 NALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL 69 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4569999999999999999999953 444 5778999999999999999999987544
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.81 E-value=4.8e-09 Score=80.12 Aligned_cols=53 Identities=23% Similarity=0.188 Sum_probs=48.0
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
...||.||..|++.|.+|+.+||.. .|+.+++||..||+||+.|+.+.+.|..
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999965 6789999999999999999999988765
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.67 E-value=1.6e-08 Score=91.54 Aligned_cols=49 Identities=16% Similarity=0.368 Sum_probs=42.7
Q ss_pred CCchHHHHHHHHhhhhHHHhhhcCC-CCCCCCchhhHHHHHHHHHHHHHHH
Q 036196 144 SSTAHAKAKKEKLGDRITALQQLVS-PFGKTDTASVLHEAMGYIRFLHDQV 193 (271)
Q Consensus 144 ~s~~seR~RReKI~ERi~aLQ~LVP-~~~KtDtASVLdEAI~YIKfLQ~QV 193 (271)
|+.. ||+||+|||+.|..|+.||| +..|+||++||..||.|||.|+..-
T Consensus 16 ~~~~-e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 16 RNKS-EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---C-HHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4444 89999999999999999999 5679999999999999999998764
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.48 E-value=1.4e-07 Score=68.62 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=43.5
Q ss_pred hHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 036196 147 AHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 147 ~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
+-||.|+..|++-|..|+.+||.. .|+.|..+|..||+||++||+.++
T Consensus 8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999965 479999999999999999998763
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.47 E-value=1.1e-07 Score=71.03 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=43.4
Q ss_pred chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHH
Q 036196 146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQV 193 (271)
Q Consensus 146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QV 193 (271)
.+-||.|+..||+.|..|+.+||.. .|+.++.+|..||+||++||..+
T Consensus 17 N~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 17 TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999964 67999999999999999999865
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.44 E-value=3.1e-08 Score=90.94 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=43.9
Q ss_pred CCCchHHHHHHHHhhhhHHHhhhcCC----CCCCCCchhhHHHHHHHHHHHHHH
Q 036196 143 PSSTAHAKAKKEKLGDRITALQQLVS----PFGKTDTASVLHEAMGYIRFLHDQ 192 (271)
Q Consensus 143 p~s~~seR~RReKI~ERi~aLQ~LVP----~~~KtDtASVLdEAI~YIKfLQ~Q 192 (271)
+|+.+ ||+||+|||+.|..|..||| ...|+||++||..||.|||.|+.+
T Consensus 16 ~~~~~-ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 16 AHSQI-EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccch-hhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34444 89999999999999999999 678999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.93 E-value=2.4e-06 Score=64.43 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHH
Q 036196 149 AKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~ 191 (271)
||.|...||+-|..||++||.. .|+.|..+|.-||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 6888999999999999999965 579999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.90 E-value=1.2e-05 Score=62.63 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196 153 KEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHDQVQVLCS 198 (271)
Q Consensus 153 ReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~QVq~Ls~ 198 (271)
|..|+++|..|..|||.. .|.++++||..|++||+.||..++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999965 4689999999999999999988776654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.00066 Score=54.14 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhc
Q 036196 149 AKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLC 197 (271)
Q Consensus 149 eR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls 197 (271)
+|.|=..||+-|..||++||.. .|+.|..+|.-||+||+.||.-++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5777788999999999999964 579999999999999999999886544
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=53.57 E-value=5.8 Score=31.34 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=29.8
Q ss_pred HHHHhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCcccccc
Q 036196 152 KKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHH 204 (271)
Q Consensus 152 RReKI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~~~~~ 204 (271)
.|.|..+-+..|.+-+ .-.-+.|=+||.+|.++|++|+..|++.+
T Consensus 46 kr~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~~~~~ 90 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDYLEHH 90 (94)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHHHHhc
Confidence 3445555555554322 12235677899999999999999999864
No 20
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=44.50 E-value=10 Score=30.89 Aligned_cols=31 Identities=3% Similarity=0.128 Sum_probs=25.4
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 036196 164 QQLVSPFGKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 164 Q~LVP~~~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
..++|+=+..-....|.++++|++.|+++|+
T Consensus 215 ~~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 215 KIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp SEEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 4678876665557899999999999999985
No 21
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=36.59 E-value=55 Score=22.26 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=26.4
Q ss_pred HHHhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 036196 153 KEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQ 192 (271)
Q Consensus 153 ReKI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~Q 192 (271)
++.|.+.+..-...+|++...=+..=+.+.+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHHHHHHHHHHHHHhhc
Confidence 4455555555556788886533344468899999998754
No 22
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=36.48 E-value=15 Score=29.74 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=23.9
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 036196 164 QQLVSPFGKTDTASVLHEAMGYIRFLHDQVQV 195 (271)
Q Consensus 164 Q~LVP~~~KtDtASVLdEAI~YIKfLQ~QVq~ 195 (271)
..++|+=+..-....|..+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 45677665533578999999999999999864
No 23
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=29.11 E-value=39 Score=27.44 Aligned_cols=31 Identities=6% Similarity=0.148 Sum_probs=25.0
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 036196 164 QQLVSPFGKTDTASVLHEAMGYIRFLHDQVQ 194 (271)
Q Consensus 164 Q~LVP~~~KtDtASVLdEAI~YIKfLQ~QVq 194 (271)
..++|+=+..-...++..+++|++.|.+++.
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 4678877665557899999999999998874
No 24
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=27.90 E-value=96 Score=20.72 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=23.4
Q ss_pred HhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHH
Q 036196 155 KLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 155 KI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~ 191 (271)
.|.+.|+.-...+|.+...=+..=+.+.+.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 3444444434678887643344446889999999875
No 25
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=25.56 E-value=1.1e+02 Score=20.43 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHhhhhHHHhhhcCCCCC-CCCchhhHHHHHHHHHHHHHH
Q 036196 154 EKLGDRITALQQLVSPFG-KTDTASVLHEAMGYIRFLHDQ 192 (271)
Q Consensus 154 eKI~ERi~aLQ~LVP~~~-KtDtASVLdEAI~YIKfLQ~Q 192 (271)
+.|...|+.-+..+|++. .++.+. +.+.+.||+.|..+
T Consensus 46 ~~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 46 VAITTVVTNGKAGMPAFKGRLTDDQ-IAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCCCHHH-HHHHHHHHHHhhhc
Confidence 344445555556788885 455444 57889999988653
No 26
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=24.41 E-value=1.2e+02 Score=20.73 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=25.1
Q ss_pred HHhhhhHHHhhhcCCCCCC-CCchhhHHHHHHHHHHHHH
Q 036196 154 EKLGDRITALQQLVSPFGK-TDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 154 eKI~ERi~aLQ~LVP~~~K-tDtASVLdEAI~YIKfLQ~ 191 (271)
+.|-+.|+.-...+|.+.. ++.+ =+.+.+.||+.|..
T Consensus 47 ~~l~~~i~~g~~~Mp~~~~~ls~~-ei~~l~~yl~~~~~ 84 (90)
T 1cyi_A 47 ESIIYQVENGKGAMPAWADRLSEE-EIQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCHH-HHHHHHHHHHhccc
Confidence 4444555555567888864 5444 47889999999876
No 27
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=23.42 E-value=1.2e+02 Score=20.60 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=24.8
Q ss_pred HHhhhhHHHhhhcCCCCCC-CCchhhHHHHHHHHHHHHH
Q 036196 154 EKLGDRITALQQLVSPFGK-TDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 154 eKI~ERi~aLQ~LVP~~~K-tDtASVLdEAI~YIKfLQ~ 191 (271)
+.|-+.|+.-...+|++.. ++.+. +.+.+.||+.|..
T Consensus 48 ~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 48 EAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 4444555555567888864 54444 6888999998875
No 28
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=22.51 E-value=1.1e+02 Score=20.65 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=25.0
Q ss_pred HHhhhhHHHhhhcCCCCCCCCchhhHHHHHHHHHHHHH
Q 036196 154 EKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHD 191 (271)
Q Consensus 154 eKI~ERi~aLQ~LVP~~~KtDtASVLdEAI~YIKfLQ~ 191 (271)
+.|.+.++.-+..+|.+.+.=+..=+.+.+.||+.|..
T Consensus 47 ~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 84 (88)
T 3dmi_A 47 KSIISQVTGGKNAMPAFGGRLSDEEIANVAAYVLASAE 84 (88)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCcCCCCCHHHHHHHHHHHHHHhc
Confidence 44555555555688988753334445788899998764
No 29
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.45 E-value=84 Score=19.40 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 036196 176 ASVLHEAMGYIRFLHDQVQV 195 (271)
Q Consensus 176 ASVLdEAI~YIKfLQ~QVq~ 195 (271)
.|-|-||-.|+..|+..++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999998764
No 30
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=21.90 E-value=25 Score=29.63 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=19.3
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 036196 164 QQLVSPFGKTDTASVLHEAMGYIRFLHDQVQV 195 (271)
Q Consensus 164 Q~LVP~~~KtDtASVLdEAI~YIKfLQ~QVq~ 195 (271)
..++|+=+..-....+.++++|++.++++|++
T Consensus 233 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~v~~ 264 (265)
T 2y8b_A 233 EVVIPGHGLPGGLELLQHTTNVVKTHKVRPVA 264 (265)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHC--------
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 46788776655578999999999999999864
Done!