BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036197
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L6H|A Chain A, Solution Structure Of Plant Nsltp2 Purified From Rice
           (Oryza Sativa)
          Length = 69

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%)

Query: 36  VTCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVT 95
             CN  QLT C  A    A P+  CC+SLR Q+ C C + ++P Y +Y +SPN R+   +
Sbjct: 1   AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSS 60

Query: 96  CGVPFPRC 103
           CG+  P C
Sbjct: 61  CGIALPTC 68


>pdb|1N89|A Chain A, Solution Structure Of A Liganded Type 2 Wheat Non-Specific
           Lipid Transfer Protein
 pdb|1TUK|A Chain A, Crystal Stucture Of Liganted Type 2 Non Specific Lipid
           Transfer Protein From Wheat
          Length = 67

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 35/67 (52%)

Query: 37  TCNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTC 96
            C  SQL  C  A    A PS  CC +LR Q+ C C Y ++P Y QY  SP+ R    +C
Sbjct: 1   ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSC 60

Query: 97  GVPFPRC 103
           G+  P C
Sbjct: 61  GLAVPHC 67


>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
           Complexes From Oryza Sativa
 pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
 pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
          Length = 91

 Score = 28.5 bits (62), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 36  VTCNP--SQLTPCLPAFTWTAPPSTVCCNSLRQ---------QRPCLCTYLRNPLYK-QY 83
           +TC    S + PCL      A PS  CC+ +R           R   C  L+N     + 
Sbjct: 1   ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60

Query: 84  YDSPNYRRIAVTCGVPFP 101
            ++ N   I   CGV  P
Sbjct: 61  LNAGNAASIPSKCGVSVP 78


>pdb|3S6P|A Chain A, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|B Chain B, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|C Chain C, Crystal Structure Of Helicoverpa Armigera Stunt Virus
 pdb|3S6P|D Chain D, Crystal Structure Of Helicoverpa Armigera Stunt Virus
          Length = 575

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 9   SGAFIFMASALLLATVVFSRELPVPEAVTCNPSQLTPCLPAFTWTAPPS-----TVCCNS 63
            G++   ASA    TV F R++ V E V  N        P FT   PPS     TV  N+
Sbjct: 360 DGSWTDFASAG--DTVTF-RQVAVDEVVVTNNPAGGGSAPTFTVRVPPSNAYTNTVFRNT 416

Query: 64  LRQQRPC 70
           L + RP 
Sbjct: 417 LLETRPS 423


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,058,150
Number of Sequences: 62578
Number of extensions: 102904
Number of successful extensions: 224
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)