Query 036197
Match_columns 103
No_of_seqs 116 out of 501
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01959 nsLTP2 nsLTP2: Non-spe 99.9 2.5E-23 5.5E-28 130.0 3.9 66 38-103 1-66 (66)
2 cd04660 nsLTP_like nsLTP_like: 99.6 7.2E-16 1.6E-20 97.2 3.6 60 42-102 7-70 (73)
3 PF14368 LTP_2: Probable lipid 99.5 6.3E-15 1.4E-19 95.4 1.5 67 34-101 18-92 (96)
4 cd01960 nsLTP1 nsLTP1: Non-spe 99.4 2.2E-13 4.8E-18 88.4 1.9 65 37-101 2-79 (89)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.3 6.6E-13 1.4E-17 80.6 2.5 56 43-98 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.0 3.8E-10 8.2E-15 69.2 3.4 60 42-101 7-75 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.6 9.5E-10 2.1E-14 70.6 -5.2 61 42-102 14-87 (90)
8 PF14547 Hydrophob_seed: Hydro 94.9 0.013 2.8E-07 38.2 1.3 61 42-102 8-80 (85)
9 cd01958 HPS_like HPS_like: Hyd 94.8 0.033 7.2E-07 36.4 2.9 66 37-102 3-81 (85)
10 PF07172 GRP: Glycine rich pro 68.1 3.9 8.5E-05 27.0 1.8 16 12-27 4-19 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 49.0 7.2 0.00016 25.4 0.5 62 42-103 14-108 (110)
12 COG4068 Uncharacterized protei 41.0 14 0.0003 22.8 0.8 21 1-21 33-53 (64)
13 PF11714 Inhibitor_I53: Thromb 34.3 49 0.0011 21.0 2.6 18 11-28 3-20 (78)
14 COG4856 Uncharacterized protei 33.7 34 0.00073 28.2 2.2 22 1-23 1-24 (403)
15 COG4218 MtrF Tetrahydromethano 33.0 57 0.0012 20.6 2.7 25 3-27 46-70 (73)
16 PHA03164 hypothetical protein; 32.3 33 0.00072 22.2 1.6 12 4-15 52-63 (88)
17 PF15284 PAGK: Phage-encoded v 29.2 39 0.00084 20.8 1.4 20 11-30 5-24 (61)
18 PF11027 DUF2615: Protein of u 25.5 70 0.0015 21.5 2.3 9 14-22 62-70 (103)
19 PRK08541 flagellin; Validated 23.6 80 0.0017 23.8 2.6 16 12-27 14-29 (211)
20 PF03100 CcmE: CcmE; InterPro 21.8 34 0.00074 23.3 0.3 11 1-11 1-11 (131)
21 PRK14740 kdbF potassium-transp 20.9 1.5E+02 0.0032 15.6 2.6 15 9-23 8-22 (29)
22 PF12555 TPPK_C: Thiamine pyro 20.9 1.5E+02 0.0033 17.1 2.9 11 5-15 8-18 (53)
23 PRK11086 sensory histidine kin 20.6 1.4E+02 0.003 23.7 3.5 21 1-21 9-29 (542)
No 1
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.88 E-value=2.5e-23 Score=129.98 Aligned_cols=66 Identities=55% Similarity=1.264 Sum_probs=62.9
Q ss_pred cCcccccCChhhhcCCCCCChhhHHhhhhcCccccccccCcCccCCCChHHHHHhhcccCCCCCCC
Q 036197 38 CNPSQLTPCLPAFTWTAPPSTVCCNSLRQQRPCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPRC 103 (103)
Q Consensus 38 C~~~~L~pC~~yv~~~~~Ps~~CC~~lk~~~~ClC~~lk~~~~~~~i~~~~a~~lp~~Cgv~~p~C 103 (103)
|+..+|++|++|++++.+||++||+.||++++|+|+|+++|++.+|||+++|++|+++||+++|+|
T Consensus 1 c~~~~L~~C~~ai~~~~~Ps~~CC~~Lk~~~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~C 66 (66)
T cd01959 1 CNPTQLSPCLPAILGGSPPSAACCAKLKEQQSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPNC 66 (66)
T ss_pred CChhhcccCHHHHhCCCCCCHHHHHHHhcCCCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCCC
Confidence 677789999999998889999999999999999999999999988999999999999999999998
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.60 E-value=7.2e-16 Score=97.24 Aligned_cols=60 Identities=35% Similarity=0.800 Sum_probs=51.8
Q ss_pred cccCChhhhcCCC---CCChhhHHhhhhcC-ccccccccCcCccCCCChHHHHHhhcccCCCCCC
Q 036197 42 QLTPCLPAFTWTA---PPSTVCCNSLRQQR-PCLCTYLRNPLYKQYYDSPNYRRIAVTCGVPFPR 102 (103)
Q Consensus 42 ~L~pC~~yv~~~~---~Ps~~CC~~lk~~~-~ClC~~lk~~~~~~~i~~~~a~~lp~~Cgv~~p~ 102 (103)
.|+||++|++++. +||+.||++||+.+ +|+|.+++.+.+. +||.++|.+||++||+++|+
T Consensus 7 ~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~-~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 7 LLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQ-IIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCccc-ccCHHHHHHHHHHcCCCCCC
Confidence 4899999999865 58899999999876 8999998755444 69999999999999999884
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.49 E-value=6.3e-15 Score=95.39 Aligned_cols=67 Identities=33% Similarity=0.701 Sum_probs=48.1
Q ss_pred CCcccCcccccCC---hhhhcCCCCCChhhHHhhhh----cCccccccccCcC-ccCCCChHHHHHhhcccCCCCC
Q 036197 34 EAVTCNPSQLTPC---LPAFTWTAPPSTVCCNSLRQ----QRPCLCTYLRNPL-YKQYYDSPNYRRIAVTCGVPFP 101 (103)
Q Consensus 34 ~~~~C~~~~L~pC---~~yv~~~~~Ps~~CC~~lk~----~~~ClC~~lk~~~-~~~~i~~~~a~~lp~~Cgv~~p 101 (103)
...+|. .+|.|| ..|++++.+||+.||+++|+ +..|+|++++++. ...+||.+++..||++||+++|
T Consensus 18 ~~~~c~-~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~ 92 (96)
T PF14368_consen 18 CCCSCA-NSLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVP 92 (96)
T ss_dssp BTTB-H-CCCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S
T ss_pred CcchhH-HHHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCC
Confidence 345663 357776 78888777999999999998 3499999999876 3346999999999999999987
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.36 E-value=2.2e-13 Score=88.36 Aligned_cols=65 Identities=25% Similarity=0.553 Sum_probs=52.3
Q ss_pred ccCcc--cccCChhhhcCCC-CCChhhHHhhhhc--------C-ccccccccCcCccC-CCChHHHHHhhcccCCCCC
Q 036197 37 TCNPS--QLTPCLPAFTWTA-PPSTVCCNSLRQQ--------R-PCLCTYLRNPLYKQ-YYDSPNYRRIAVTCGVPFP 101 (103)
Q Consensus 37 ~C~~~--~L~pC~~yv~~~~-~Ps~~CC~~lk~~--------~-~ClC~~lk~~~~~~-~i~~~~a~~lp~~Cgv~~p 101 (103)
+|..+ .|.||++|++++. +|+++||+++++. + .|+|.++++..... .||.++|..||++||+++|
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence 56655 4899999999865 8999999999971 2 58888888643332 3899999999999999865
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.33 E-value=6.6e-13 Score=80.63 Aligned_cols=56 Identities=29% Similarity=0.649 Sum_probs=47.2
Q ss_pred ccCChhhhcCC-CCCChhhHHhhhhc----CccccccccCcCccC-CC-ChHHHHHhhcccCC
Q 036197 43 LTPCLPAFTWT-APPSTVCCNSLRQQ----RPCLCTYLRNPLYKQ-YY-DSPNYRRIAVTCGV 98 (103)
Q Consensus 43 L~pC~~yv~~~-~~Ps~~CC~~lk~~----~~ClC~~lk~~~~~~-~i-~~~~a~~lp~~Cgv 98 (103)
|.||++|++++ .+||+.||+++++. ..|+|++++++.... ++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 67999999987 48999999999984 389999999865442 34 78999999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.99 E-value=3.8e-10 Score=69.21 Aligned_cols=60 Identities=40% Similarity=0.774 Sum_probs=49.9
Q ss_pred cccCChhhhcCC---CCCChhhHHhhhhc-C-ccccccccCcCccCC----CChHHHHHhhcccCCCCC
Q 036197 42 QLTPCLPAFTWT---APPSTVCCNSLRQQ-R-PCLCTYLRNPLYKQY----YDSPNYRRIAVTCGVPFP 101 (103)
Q Consensus 42 ~L~pC~~yv~~~---~~Ps~~CC~~lk~~-~-~ClC~~lk~~~~~~~----i~~~~a~~lp~~Cgv~~p 101 (103)
.+.+|.+|++++ .+|+++||+.++.. + .|+|..++......+ ++..+|..||+.||++++
T Consensus 7 ~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 7 QLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPP 75 (79)
T ss_pred hHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCC
Confidence 356999999886 37889999999998 6 899999876444333 589999999999999987
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.56 E-value=9.5e-10 Score=70.61 Aligned_cols=61 Identities=30% Similarity=0.621 Sum_probs=50.8
Q ss_pred cccCChhhhcCCC-CCChhhHHhhhhcC-ccccccccCcCcc-----------CCCChHHHHHhhcccCCCCCC
Q 036197 42 QLTPCLPAFTWTA-PPSTVCCNSLRQQR-PCLCTYLRNPLYK-----------QYYDSPNYRRIAVTCGVPFPR 102 (103)
Q Consensus 42 ~L~pC~~yv~~~~-~Ps~~CC~~lk~~~-~ClC~~lk~~~~~-----------~~i~~~~a~~lp~~Cgv~~p~ 102 (103)
.+.+|.+|++++. .|+..||+.|++.+ .|.|..++..... ..++..+|..||+.||+++|.
T Consensus 14 ~l~~c~~~~~~~~~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~ 87 (90)
T PF00234_consen 14 RLSPCLPYLQGGCQQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY 87 (90)
T ss_dssp HHHGGHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred cccccHHHHhcccccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 4799999999865 68999999999976 8999999753222 147888999999999999986
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=94.94 E-value=0.013 Score=38.19 Aligned_cols=61 Identities=23% Similarity=0.553 Sum_probs=42.9
Q ss_pred cccCChhhhc-----CCCCCChhhHHhhhh-----cCccccccccCcCcc-CCCChH-HHHHhhcccCCCCCC
Q 036197 42 QLTPCLPAFT-----WTAPPSTVCCNSLRQ-----QRPCLCTYLRNPLYK-QYYDSP-NYRRIAVTCGVPFPR 102 (103)
Q Consensus 42 ~L~pC~~yv~-----~~~~Ps~~CC~~lk~-----~~~ClC~~lk~~~~~-~~i~~~-~a~~lp~~Cgv~~p~ 102 (103)
+|.-|...+. .+.++.+.||.-++. ...|+|.-+|...+. ..+|.+ ....+...||..+|+
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcC
Confidence 4788888771 234678899999996 227999988854443 334333 467788889998874
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.77 E-value=0.033 Score=36.36 Aligned_cols=66 Identities=23% Similarity=0.530 Sum_probs=45.1
Q ss_pred ccCcc--cccCChhhhcC-----CCCCChhhHHhhhh-----cCccccccccCcCccCCCChH-HHHHhhcccCCCCCC
Q 036197 37 TCNPS--QLTPCLPAFTW-----TAPPSTVCCNSLRQ-----QRPCLCTYLRNPLYKQYYDSP-NYRRIAVTCGVPFPR 102 (103)
Q Consensus 37 ~C~~~--~L~pC~~yv~~-----~~~Ps~~CC~~lk~-----~~~ClC~~lk~~~~~~~i~~~-~a~~lp~~Cgv~~p~ 102 (103)
+|-.+ +|.-|..-+.. +.+|.++||.-++. ...|+|.-+|...+...+|.+ +..-+...||...|.
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCCC
Confidence 46544 46778877632 34778899999996 238999999864454334444 455666789998874
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.06 E-value=3.9 Score=26.96 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 036197 12 FIFMASALLLATVVFS 27 (103)
Q Consensus 12 ~~~~~~a~~~~~~~~~ 27 (103)
+++++++++++++|+.
T Consensus 4 K~~llL~l~LA~lLli 19 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLI 19 (95)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555555444333
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=49.03 E-value=7.2 Score=25.40 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=40.5
Q ss_pred cccCChhhhcCC----CC-----------CChhhHHhhhhcC-ccccccccCc------Cc-------c-C--CCChHHH
Q 036197 42 QLTPCLPAFTWT----AP-----------PSTVCCNSLRQQR-PCLCTYLRNP------LY-------K-Q--YYDSPNY 89 (103)
Q Consensus 42 ~L~pC~~yv~~~----~~-----------Ps~~CC~~lk~~~-~ClC~~lk~~------~~-------~-~--~i~~~~a 89 (103)
.|.+|..|+.-. .. ....||.-++..+ .|.|+-|..- .. . . ..-...|
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQAA 93 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHHH
Confidence 478888888421 10 1246999999976 8999888631 00 0 0 0123469
Q ss_pred HHhhcccCCCC-CCC
Q 036197 90 RRIAVTCGVPF-PRC 103 (103)
Q Consensus 90 ~~lp~~Cgv~~-p~C 103 (103)
..||..||+.. +.|
T Consensus 94 ~~Lp~~C~~~~~~~C 108 (110)
T cd00261 94 QNLPSMCNLYPPPYC 108 (110)
T ss_pred HhhchhcCCCCCCCC
Confidence 99999999987 555
No 12
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.99 E-value=14 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=12.2
Q ss_pred CCCCCccchHHHHHHHHHHHH
Q 036197 1 MKKNNNNVSGAFIFMASALLL 21 (103)
Q Consensus 1 ~~~~~~~~~~~~~~~~~a~~~ 21 (103)
|.||.+|.+...+.|.+++++
T Consensus 33 l~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 33 LNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777666665444444
No 13
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=34.29 E-value=49 Score=21.00 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 036197 11 AFIFMASALLLATVVFSR 28 (103)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~ 28 (103)
+|+.+++++++++++++.
T Consensus 3 hFaiLilavVaSAvVMAy 20 (78)
T PF11714_consen 3 HFAILILAVVASAVVMAY 20 (78)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 477778888888777763
No 14
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.70 E-value=34 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.166 Sum_probs=15.5
Q ss_pred CCC--CCccchHHHHHHHHHHHHHH
Q 036197 1 MKK--NNNNVSGAFIFMASALLLAT 23 (103)
Q Consensus 1 ~~~--~~~~~~~~~~~~~~a~~~~~ 23 (103)
|+| |+ ++.++++.++||+++++
T Consensus 1 MdK~lns-~W~irIiaff~A~~Lfl 24 (403)
T COG4856 1 MDKFLNS-PWLIRIIAFFFAILLFL 24 (403)
T ss_pred CcchhcC-cHhHHHHHHHHHHHhhe
Confidence 777 55 77888877777766654
No 15
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=32.97 E-value=57 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHh
Q 036197 3 KNNNNVSGAFIFMASALLLATVVFS 27 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~a~~~~~~~~~ 27 (103)
-|-+|+.|--+-+++|.+++.++++
T Consensus 46 l~st~i~GlaiGfvfA~vLv~illl 70 (73)
T COG4218 46 LNSTRIAGLAIGFVFAGVLVGILLL 70 (73)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887765543
No 16
>PHA03164 hypothetical protein; Provisional
Probab=32.34 E-value=33 Score=22.19 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.9
Q ss_pred CCccchHHHHHH
Q 036197 4 NNNNVSGAFIFM 15 (103)
Q Consensus 4 ~~~~~~~~~~~~ 15 (103)
||+|-+|.|+++
T Consensus 52 nnrRktftFlvL 63 (88)
T PHA03164 52 NNRRKTFTFLVL 63 (88)
T ss_pred HhhhheeehHHH
Confidence 677878877764
No 17
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.22 E-value=39 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 036197 11 AFIFMASALLLATVVFSREL 30 (103)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~ 30 (103)
+++|+++++++++..+++..
T Consensus 5 ksifL~l~~~LsA~~FSasa 24 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSASA 24 (61)
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 45666666666666666543
No 18
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=25.55 E-value=70 Score=21.49 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 036197 14 FMASALLLA 22 (103)
Q Consensus 14 ~~~~a~~~~ 22 (103)
+|++|++++
T Consensus 62 w~~~A~~ly 70 (103)
T PF11027_consen 62 WMVLAMALY 70 (103)
T ss_pred HHHHHHHHH
Confidence 333444433
No 19
>PRK08541 flagellin; Validated
Probab=23.64 E-value=80 Score=23.79 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 036197 12 FIFMASALLLATVVFS 27 (103)
Q Consensus 12 ~~~~~~a~~~~~~~~~ 27 (103)
||+|++++++.+-++.
T Consensus 14 FIAmVLVAAVAA~VLI 29 (211)
T PRK08541 14 FIAMVLVAAVAAAVLI 29 (211)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4556655555554444
No 20
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=21.84 E-value=34 Score=23.33 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCCccchHH
Q 036197 1 MKKNNNNVSGA 11 (103)
Q Consensus 1 ~~~~~~~~~~~ 11 (103)
|++.++|..--
T Consensus 1 ~~~~~~rl~~~ 11 (131)
T PF03100_consen 1 MKRRKKRLILV 11 (131)
T ss_dssp -----------
T ss_pred CCcceeehhhH
Confidence 78888887633
No 21
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=20.92 E-value=1.5e+02 Score=15.56 Aligned_cols=15 Identities=27% Similarity=0.013 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHH
Q 036197 9 SGAFIFMASALLLAT 23 (103)
Q Consensus 9 ~~~~~~~~~a~~~~~ 23 (103)
+|+.++..++-++++
T Consensus 8 s~a~a~~Lf~YLv~A 22 (29)
T PRK14740 8 SLALATGLFVYLLVA 22 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556665444444443
No 22
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=20.87 E-value=1.5e+02 Score=17.14 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.5
Q ss_pred CccchHHHHHH
Q 036197 5 NNNVSGAFIFM 15 (103)
Q Consensus 5 ~~~~~~~~~~~ 15 (103)
..|++++..++
T Consensus 8 rsris~~~~~~ 18 (53)
T PF12555_consen 8 RSRISGWALAL 18 (53)
T ss_pred cCCCchHHHHH
Confidence 35788886664
No 23
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=20.55 E-value=1.4e+02 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=12.2
Q ss_pred CCCCCccchHHHHHHHHHHHH
Q 036197 1 MKKNNNNVSGAFIFMASALLL 21 (103)
Q Consensus 1 ~~~~~~~~~~~~~~~~~a~~~ 21 (103)
|.|+|.+++.+.+.+++.+++
T Consensus 9 ~~~~~~~l~~kl~~~~~~~~~ 29 (542)
T PRK11086 9 KRKRPMKLSTTVTLMVSAVVF 29 (542)
T ss_pred cCCCCccHHHHHHHHHHHHHH
Confidence 345566777777765544333
Done!